Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06191.t1 | XP_003630623.2 | 96.7 | 788 | 23 | 1 | 3 | 787 | 1 | 788 | 0.00E+00 | 1610.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06191.t1 | O04196 | 79.0 | 724 | 150 | 1 | 62 | 783 | 56 | 779 | 0.0e+00 | 1252.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06191.t1 | G7LIX1 | 96.7 | 788 | 23 | 1 | 3 | 787 | 1 | 788 | 0.0e+00 | 1610.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050520 | MS.gene06191 | 0.805503 | 1.29E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene06191 | 0.813306 | 2.74E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene06191 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene053318 | MS.gene06191 | 0.842096 | 3.19E-58 | -1.69E-46 |
| MS.gene055894 | MS.gene06191 | 0.82385 | 1.11E-53 | -1.69E-46 |
| MS.gene05601 | MS.gene06191 | 0.83403 | 3.79E-56 | -1.69E-46 |
| MS.gene058120 | MS.gene06191 | 0.81003 | 1.41E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene06191 | 0.823715 | 1.19E-53 | -1.69E-46 |
| MS.gene059680 | MS.gene06191 | 0.803822 | 2.90E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene06191 | 0.819309 | 1.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38584 | MS.gene06191 | PPI |
| MS.gene013128 | MS.gene06191 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06191.t1 | MTR_8g101490 | 96.701 | 788 | 23 | 1 | 3 | 787 | 1 | 788 | 0.0 | 1596 |
| MS.gene06191.t1 | MTR_8g101490 | 96.530 | 634 | 19 | 1 | 3 | 633 | 1 | 634 | 0.0 | 1281 |
| MS.gene06191.t1 | MTR_3g099500 | 44.565 | 736 | 352 | 16 | 57 | 779 | 81 | 773 | 0.0 | 598 |
| MS.gene06191.t1 | MTR_3g099500 | 43.559 | 753 | 352 | 17 | 57 | 779 | 81 | 790 | 0.0 | 588 |
| MS.gene06191.t1 | MTR_7g094560 | 33.190 | 696 | 366 | 24 | 75 | 747 | 202 | 821 | 1.44e-97 | 323 |
| MS.gene06191.t1 | MTR_1g090693 | 23.230 | 551 | 284 | 22 | 171 | 635 | 281 | 778 | 1.49e-16 | 84.7 |
| MS.gene06191.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 306 | 504 | 1.14e-11 | 68.9 |
| MS.gene06191.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 306 | 504 | 1.58e-11 | 68.6 |
| MS.gene06191.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 303 | 501 | 1.71e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06191.t1 | AT2G39930 | 77.808 | 739 | 161 | 2 | 48 | 783 | 41 | 779 | 0.0 | 1235 |
| MS.gene06191.t1 | AT2G39930 | 78.768 | 617 | 128 | 2 | 48 | 661 | 41 | 657 | 0.0 | 1047 |
| MS.gene06191.t1 | AT2G39930 | 77.758 | 562 | 122 | 2 | 48 | 606 | 41 | 602 | 0.0 | 939 |
| MS.gene06191.t1 | AT4G09020 | 44.823 | 763 | 360 | 18 | 34 | 779 | 43 | 761 | 0.0 | 612 |
| MS.gene06191.t1 | AT1G03310 | 30.150 | 733 | 400 | 21 | 74 | 779 | 228 | 875 | 5.19e-95 | 316 |
| MS.gene06191.t1 | AT1G03310 | 30.150 | 733 | 400 | 21 | 74 | 779 | 228 | 875 | 5.19e-95 | 316 |
| MS.gene06191.t1 | AT5G04360 | 23.138 | 631 | 365 | 24 | 77 | 635 | 204 | 786 | 2.36e-16 | 84.3 |
| MS.gene06191.t1 | AT5G04360 | 23.138 | 631 | 365 | 24 | 77 | 635 | 204 | 786 | 2.36e-16 | 84.3 |
| MS.gene06191.t1 | AT5G03650 | 30.603 | 232 | 121 | 11 | 195 | 419 | 258 | 456 | 3.48e-14 | 77.0 |
| MS.gene06191.t1 | AT2G36390 | 26.407 | 231 | 132 | 10 | 195 | 419 | 293 | 491 | 1.25e-11 | 68.9 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTCACTGGGGTATT+TGG | 0.181610 | 4.2:+3505555 | MS.gene06191:CDS |
| CTACAGTTACAATGCTATTC+AGG | 0.204436 | 4.2:+3501734 | MS.gene06191:CDS |
| ATCAATGGCGGACTGCTTAA+AGG | 0.214386 | 4.2:-3504418 | None:intergenic |
| TGGAACAGAGTTAATGTATT+TGG | 0.249081 | 4.2:+3504358 | MS.gene06191:CDS |
| AACTCCTCTAAAAGAAATAA+TGG | 0.265535 | 4.2:-3502581 | None:intergenic |
| GTTATAAGCAGAGGAGAGTT+TGG | 0.280859 | 4.2:+3500659 | MS.gene06191:CDS |
| CTTCTTTGACCTTGAATTTG+AGG | 0.284584 | 4.2:-3499928 | None:intergenic |
| CTCTATGCTTATAAATTTGA+TGG | 0.295492 | 4.2:+3500328 | MS.gene06191:CDS |
| TGGCTTCACTCTAGCTGATT+TGG | 0.301346 | 4.2:+3506949 | MS.gene06191:CDS |
| GGGGAATTCTACAACTATTC+AGG | 0.301916 | 4.2:+3503425 | MS.gene06191:CDS |
| GGAGAAGCTTGATCACTTAA+AGG | 0.307380 | 4.2:+3500975 | MS.gene06191:CDS |
| GGGAGTTCCGATGATATATA+TGG | 0.316369 | 4.2:+3508490 | MS.gene06191:intron |
| TGGGAGTCCTAATTTGTATC+AGG | 0.317614 | 4.2:+3506595 | MS.gene06191:CDS |
| ATCATTGTTGTCTTCTCCAT+TGG | 0.320037 | 4.2:-3506999 | None:intergenic |
| GTCAGCAAGTCACCTTCTAT+TGG | 0.323135 | 4.2:-3504385 | None:intergenic |
| AGGTACCATACCAGCCATTT+GGG | 0.325178 | 4.2:-3500711 | None:intergenic |
| ATATATATGGGAGATGAATA+TGG | 0.330449 | 4.2:+3508503 | MS.gene06191:CDS |
| AGATAAACCTGATACAAATT+AGG | 0.337665 | 4.2:-3506602 | None:intergenic |
| ATCATATGGTGCTTTCTTGC+TGG | 0.344939 | 4.2:-3510006 | None:intergenic |
| TCTGTTGTGAATCTCGAAAT+TGG | 0.346786 | 4.2:-3499889 | None:intergenic |
| GTTTGGCATGTGTTTCTAAA+AGG | 0.352602 | 4.2:+3500289 | MS.gene06191:CDS |
| AAGGGTACAGATGGCTTTGC+TGG | 0.353599 | 4.2:+3506551 | MS.gene06191:CDS |
| TCAGACCAGTCTGGTGTTAC+AGG | 0.355192 | 4.2:-3508875 | None:intergenic |
| TTATAAGCAGAGGAGAGTTT+GGG | 0.364589 | 4.2:+3500660 | MS.gene06191:CDS |
| AATTTATAGTGGACTGCTTA+AGG | 0.368791 | 4.2:+3503489 | MS.gene06191:CDS |
| TCTCTCGTGCAACAGATATT+GGG | 0.369152 | 4.2:+3504177 | MS.gene06191:intron |
| CATCTGTACCCTTGATAAAC+TGG | 0.375594 | 4.2:-3506541 | None:intergenic |
| AGTCTGGTGTTACAGGAAAA+TGG | 0.377654 | 4.2:-3508868 | None:intergenic |
| AAGTTGGCACTTTCCCTCAC+TGG | 0.385401 | 4.2:+3505546 | MS.gene06191:CDS |
| TCGAGTAAGGCCGAGTTTCC+TGG | 0.387372 | 4.2:+3500934 | MS.gene06191:CDS |
| AAGGTACCATACCAGCCATT+TGG | 0.387541 | 4.2:-3500712 | None:intergenic |
| TTATTTCCGATGGGACAAAA+AGG | 0.389436 | 4.2:+3508661 | MS.gene06191:CDS |
| GAAGGTGACTTGCTGACAAT+TGG | 0.397727 | 4.2:+3504391 | MS.gene06191:CDS |
| TCATTGTTGTCTTCTCCATT+GGG | 0.398138 | 4.2:-3506998 | None:intergenic |
| GATCCATTGGTGAATAAAAC+AGG | 0.399169 | 4.2:+3500262 | MS.gene06191:CDS |
| TGACCTTGAATTTGAGGAAA+TGG | 0.399301 | 4.2:-3499922 | None:intergenic |
| ACTATAAATTTCCTTACAAC+GGG | 0.399791 | 4.2:-3503476 | None:intergenic |
| TAGGACCTGATGGCAATTGC+TGG | 0.400428 | 4.2:+3500687 | MS.gene06191:CDS |
| TCAATGGCGGACTGCTTAAA+GGG | 0.403047 | 4.2:-3504417 | None:intergenic |
| TAATTTCTTTCTTTCTCTCA+TGG | 0.403152 | 4.2:+3507808 | MS.gene06191:CDS |
| ACTAAGCATGGGATACATAT+TGG | 0.404759 | 4.2:-3510093 | None:intergenic |
| ATTGCAACCATCCCGTTGTA+AGG | 0.408121 | 4.2:+3503465 | MS.gene06191:CDS |
| TGCAATGTGTTTAGTTTGAC+TGG | 0.408898 | 4.2:+3500830 | MS.gene06191:intron |
| GAGTTTCCTGGTACATATCT+TGG | 0.413063 | 4.2:+3500946 | MS.gene06191:CDS |
| GGCACACAAGCGAGGAATAG+AGG | 0.424028 | 4.2:+3502411 | MS.gene06191:CDS |
| GAGAGGTTCCCATCTGTATC+CGG | 0.425817 | 4.2:-3509976 | None:intergenic |
| TCTTTCTCTCATGGTTTCCC+AGG | 0.430118 | 4.2:+3507817 | MS.gene06191:CDS |
| ACTCCTCTAAAAGAAATAAT+GGG | 0.435507 | 4.2:-3502580 | None:intergenic |
| ATATCTCTTCCGCGAAGATC+AGG | 0.436192 | 4.2:-3510038 | None:intergenic |
| AGCCTTTGGAAACTTGCAAT+TGG | 0.436280 | 4.2:-3500019 | None:intergenic |
| GTATTTGGTGCTCCAATAGA+AGG | 0.437044 | 4.2:+3504373 | MS.gene06191:CDS |
| TCACCATTTCCTCAAATTCA+AGG | 0.439664 | 4.2:+3499919 | MS.gene06191:CDS |
| ATAGCTGAAGCCTGGGATGC+TGG | 0.441423 | 4.2:+3505512 | MS.gene06191:CDS |
| AGAAGAAAACCTTCGCCGTT+GGG | 0.443010 | 4.2:+3499946 | MS.gene06191:CDS |
| CGTTGTAAGGAAATTTATAG+TGG | 0.443119 | 4.2:+3503478 | MS.gene06191:CDS |
| CTGATGTCGGGAAGTCATCT+AGG | 0.444177 | 4.2:-3508826 | None:intergenic |
| CTATTATGACCAGGAGTAGC+AGG | 0.449828 | 4.2:+3504242 | MS.gene06191:CDS |
| TATAGCTTATAGCTGAAGCC+TGG | 0.452561 | 4.2:+3505504 | MS.gene06191:intron |
| GAGAAAATCACAATAGTAGC+TGG | 0.454266 | 4.2:+3507023 | MS.gene06191:CDS |
| CCCTCACTGGGGTATTTGGT+CGG | 0.455085 | 4.2:+3505559 | MS.gene06191:CDS |
| AGTGTTGTAGAGTGAGAAAG+AGG | 0.455306 | 4.2:-3499846 | None:intergenic |
| TGCAGCTTAATTATTTCCGA+TGG | 0.457344 | 4.2:+3508651 | MS.gene06191:intron |
| GAGTGAATTGAGTGAGTAAA+TGG | 0.458844 | 4.2:-3500090 | None:intergenic |
| GCCTTTGAAATATCCACAAA+AGG | 0.460159 | 4.2:+3500864 | MS.gene06191:CDS |
| GTATTTGGTCGGAATGGAAT+GGG | 0.462316 | 4.2:+3505570 | MS.gene06191:CDS |
| CATTGGTGAAAAGTAATTGA+TGG | 0.464554 | 4.2:-3502314 | None:intergenic |
| CATCTGTATCCGGGACGCTC+TGG | 0.465289 | 4.2:-3509966 | None:intergenic |
| GTAGGGTGAAGGGTAGCCTT+TGG | 0.465735 | 4.2:-3500033 | None:intergenic |
| ACAAGCTAAGCATTTACATC+GGG | 0.468285 | 4.2:-3510143 | None:intergenic |
| TGAATAAAACAGGATGTGTT+TGG | 0.471312 | 4.2:+3500272 | MS.gene06191:CDS |
| TGGGGCCAGCAATTGCCATC+AGG | 0.472089 | 4.2:-3500692 | None:intergenic |
| TGGCAATTGCTGGCCCCAAA+TGG | 0.474386 | 4.2:+3500697 | MS.gene06191:CDS |
| GCTGATGAGTATCTTATCAT+TGG | 0.475818 | 4.2:-3502331 | None:intergenic |
| ATTACTGGAGCAGGTTATCA+TGG | 0.476022 | 4.2:+3502516 | MS.gene06191:intron |
| ACCTTCACTCCACGAAGTAT+TGG | 0.476206 | 4.2:-3504460 | None:intergenic |
| GTACAGGCCTCCAGCATCCC+AGG | 0.477191 | 4.2:-3505522 | None:intergenic |
| CACTGTACGCCAGTTTATCA+AGG | 0.477869 | 4.2:+3506532 | MS.gene06191:CDS |
| GTACATTACTCTTGATCCAT+TGG | 0.478751 | 4.2:+3500249 | MS.gene06191:CDS |
| AGAGGAGAGTTTGGGGAAGT+AGG | 0.483861 | 4.2:+3500668 | MS.gene06191:CDS |
| TTCTACAACTATTCAGGATG+TGG | 0.486104 | 4.2:+3503431 | MS.gene06191:CDS |
| AGTTGGCACTTTCCCTCACT+GGG | 0.493678 | 4.2:+3505547 | MS.gene06191:CDS |
| AGTACCTCCTCATGATCAAA+AGG | 0.494764 | 4.2:-3500731 | None:intergenic |
| ACTGAAGCCTCTCTGATGTC+GGG | 0.499110 | 4.2:-3508838 | None:intergenic |
| GGTATTTGGTCGGAATGGAA+TGG | 0.501264 | 4.2:+3505569 | MS.gene06191:CDS |
| ACTGGCGGAACTTGGTCAAA+AGG | 0.502084 | 4.2:-3508718 | None:intergenic |
| TACAAAGCATGAGTCGAGTA+AGG | 0.506814 | 4.2:+3500921 | MS.gene06191:CDS |
| TACAAAACTGTGGCCGTGAT+GGG | 0.507138 | 4.2:+3502359 | MS.gene06191:CDS |
| CACTGAAGCCTCTCTGATGT+CGG | 0.508243 | 4.2:-3508839 | None:intergenic |
| GCATTTGCTGAATGTATTTG+TGG | 0.508395 | 4.2:+3506575 | MS.gene06191:CDS |
| TACAGTTACAATGCTATTCA+GGG | 0.511531 | 4.2:+3501735 | MS.gene06191:CDS |
| GATGAATATGGACATACAAA+AGG | 0.512112 | 4.2:+3508515 | MS.gene06191:CDS |
| GGAAAGTGCCAACTTGGTAC+AGG | 0.512943 | 4.2:-3505538 | None:intergenic |
| GGAGTTCCGATGATATATAT+GGG | 0.517870 | 4.2:+3508491 | MS.gene06191:CDS |
| TGCAGGGAATGTGAGTCGCT+TGG | 0.523500 | 4.2:+3508803 | MS.gene06191:intron |
| AGTGAGGGAAAGTGCCAACT+TGG | 0.524104 | 4.2:-3505544 | None:intergenic |
| CGGCTAGATTCAGACCAGTC+TGG | 0.526153 | 4.2:-3508884 | None:intergenic |
| ATCTTGCTTCTATTATGACC+AGG | 0.526714 | 4.2:+3504233 | MS.gene06191:CDS |
| CTGGCCCCAAATGGCTGGTA+TGG | 0.529820 | 4.2:+3500706 | MS.gene06191:CDS |
| CACTATAAATTTCCTTACAA+CGG | 0.530840 | 4.2:-3503477 | None:intergenic |
| AACCTTGTATGTGCTCATGA+TGG | 0.532079 | 4.2:+3506929 | MS.gene06191:CDS |
| GAGTACTTACTGGCGGAACT+TGG | 0.533315 | 4.2:-3508726 | None:intergenic |
| GTGCCTCAGTAAAGAAATTG+AGG | 0.534102 | 4.2:+3507771 | MS.gene06191:CDS |
| TTCTTGAGGAGTGGCACCGT+AGG | 0.535813 | 4.2:-3500051 | None:intergenic |
| AAGAAGAAAACCTTCGCCGT+TGG | 0.535917 | 4.2:+3499945 | MS.gene06191:CDS |
| ATGATAAGATACTCATCAGC+TGG | 0.536295 | 4.2:+3502334 | MS.gene06191:CDS |
| AGTATATAACCTGCTACTCC+TGG | 0.536428 | 4.2:-3504251 | None:intergenic |
| AATTGCTGGCCCCAAATGGC+TGG | 0.539506 | 4.2:+3500701 | MS.gene06191:CDS |
| GATTGAAGAGTAACTAAGCA+TGG | 0.540141 | 4.2:-3510105 | None:intergenic |
| ACTCAGATGGACTCGGTGAA+GGG | 0.540328 | 4.2:+3509891 | MS.gene06191:intron |
| TCAGGTGTGAGAAAATCATA+TGG | 0.541452 | 4.2:-3510020 | None:intergenic |
| CATTTGCTGAATGTATTTGT+GGG | 0.541483 | 4.2:+3506576 | MS.gene06191:CDS |
| CACAATAGTAGCTGGAACTG+TGG | 0.542471 | 4.2:+3507031 | MS.gene06191:CDS |
| AACTCAGATGGACTCGGTGA+AGG | 0.542854 | 4.2:+3509890 | MS.gene06191:intron |
| ATACTGATCATATCAATCAA+TGG | 0.544584 | 4.2:-3504433 | None:intergenic |
| GTGCCACTCCTCAAGAAGAC+GGG | 0.548138 | 4.2:+3500057 | MS.gene06191:CDS |
| CAGTTTATCAAGGGTACAGA+TGG | 0.549849 | 4.2:+3506542 | MS.gene06191:CDS |
| CAGAGCGTCCCGGATACAGA+TGG | 0.550274 | 4.2:+3509967 | MS.gene06191:CDS |
| TCCAATACTTCGTGGAGTGA+AGG | 0.550686 | 4.2:+3504459 | MS.gene06191:CDS |
| TTTCTCACACCTGATCTTCG+CGG | 0.551398 | 4.2:+3510029 | MS.gene06191:CDS |
| AATGGAGAAGACAACAATGA+TGG | 0.552146 | 4.2:+3507001 | MS.gene06191:CDS |
| GTATTACATGGTGGCACCCA+AGG | 0.555302 | 4.2:+3502615 | MS.gene06191:CDS |
| ATGTCATGAGTTCAATGAGC+TGG | 0.556145 | 4.2:+3501707 | MS.gene06191:CDS |
| TAAATTTCCTTACAACGGGA+TGG | 0.557866 | 4.2:-3503472 | None:intergenic |
| GCTTTGATCAACAATGGCAA+TGG | 0.558374 | 4.2:+3499800 | None:intergenic |
| GGAGTGGCACCGTAGGGTGA+AGG | 0.558934 | 4.2:-3500044 | None:intergenic |
| ACTGGGGTATTTGGTCGGAA+TGG | 0.560039 | 4.2:+3505564 | MS.gene06191:CDS |
| GCAGCTTAATTATTTCCGAT+GGG | 0.560112 | 4.2:+3508652 | MS.gene06191:intron |
| CGCCAATTGCAAGTTTCCAA+AGG | 0.561119 | 4.2:+3500017 | MS.gene06191:CDS |
| GAAAGAGGAGAGAGAATGTG+AGG | 0.563347 | 4.2:-3499831 | None:intergenic |
| ACAAGGTTAATACTATTCCA+TGG | 0.565220 | 4.2:-3506914 | None:intergenic |
| TTCTTGCTGGTGTCTACGAG+AGG | 0.566153 | 4.2:-3509993 | None:intergenic |
| TGACAATAGCGTGTATTACA+TGG | 0.566359 | 4.2:+3502603 | MS.gene06191:CDS |
| ATAGCTTATAGCTGAAGCCT+GGG | 0.567230 | 4.2:+3505505 | MS.gene06191:intron |
| TTTCCTCAATTTCTTTACTG+AGG | 0.567283 | 4.2:-3507774 | None:intergenic |
| AGTATTGATCCAATACTTCG+TGG | 0.568695 | 4.2:+3504451 | MS.gene06191:CDS |
| GACACGATTCCCAACGGCGA+AGG | 0.568849 | 4.2:-3499955 | None:intergenic |
| TGAATTTGAGGAAATGGTGA+TGG | 0.569036 | 4.2:-3499916 | None:intergenic |
| GTTACCTTGCCAGAGCGTCC+CGG | 0.569481 | 4.2:+3509957 | MS.gene06191:CDS |
| TATATGAAATGCATGTGAGA+GGG | 0.570887 | 4.2:+3500896 | MS.gene06191:CDS |
| CCAGGGTAAAAGCCACAAAA+CGG | 0.572393 | 4.2:-3508904 | None:intergenic |
| AAATTGACCCCGTCTTCTTG+AGG | 0.573022 | 4.2:-3500065 | None:intergenic |
| AAAGGCTACCCTTCACCCTA+CGG | 0.576668 | 4.2:+3500035 | MS.gene06191:CDS |
| TCTGGCAAGGTAACAGTGAA+AGG | 0.578133 | 4.2:-3509948 | None:intergenic |
| AAAATAAACTCAGATGGACT+CGG | 0.579909 | 4.2:+3509884 | MS.gene06191:intron |
| TATAAGCAGAGGAGAGTTTG+GGG | 0.580184 | 4.2:+3500661 | MS.gene06191:CDS |
| AGCCATCATGAGCACATACA+AGG | 0.581009 | 4.2:-3506931 | None:intergenic |
| TCAGAGAGGCTTCAGTGGCA+TGG | 0.583978 | 4.2:+3508845 | MS.gene06191:CDS |
| GATTAGGCAGTTATAAGCAG+AGG | 0.584382 | 4.2:+3500650 | MS.gene06191:intron |
| TCTTGAGGAGTGGCACCGTA+GGG | 0.585196 | 4.2:-3500050 | None:intergenic |
| TCATAGTAGTGACCGTGTTG+AGG | 0.585274 | 4.2:-3500361 | None:intergenic |
| TCATCTCCCATATATATCAT+CGG | 0.586946 | 4.2:-3508497 | None:intergenic |
| AGAGGTTCCCATCTGTATCC+GGG | 0.587326 | 4.2:-3509975 | None:intergenic |
| TTTGGGGAAGTAGGACCTGA+TGG | 0.588171 | 4.2:+3500677 | MS.gene06191:CDS |
| CACGTAATTATCATGACAGT+AGG | 0.588746 | 4.2:-3508552 | None:intergenic |
| GCTTGTGTGCCTCTTTGATG+AGG | 0.589192 | 4.2:-3502399 | None:intergenic |
| GAGTGGCACCGTAGGGTGAA+GGG | 0.589871 | 4.2:-3500043 | None:intergenic |
| ATACAAAACTGTGGCCGTGA+TGG | 0.591554 | 4.2:+3502358 | MS.gene06191:CDS |
| CGACATCAGAGAGGCTTCAG+TGG | 0.592621 | 4.2:+3508840 | MS.gene06191:CDS |
| GTAACAGAAATGCACATGGA+TGG | 0.594015 | 4.2:+3504199 | MS.gene06191:CDS |
| AATAAGCATAACTTGCCCAA+TGG | 0.595993 | 4.2:+3506983 | MS.gene06191:CDS |
| TTCGCCGTTGGGAATCGTGT+CGG | 0.601538 | 4.2:+3499957 | MS.gene06191:CDS |
| TACAGCTGAAGGGAATGAGA+AGG | 0.602790 | 4.2:+3502555 | MS.gene06191:CDS |
| TGGTACATATCTTGGTGTCG+TGG | 0.603299 | 4.2:+3500954 | MS.gene06191:CDS |
| GCTGGAGGCCTGTACCAAGT+TGG | 0.603543 | 4.2:+3505530 | MS.gene06191:CDS |
| ATTTGAGGAAATGGTGATGG+AGG | 0.605171 | 4.2:-3499913 | None:intergenic |
| TACAAGCTAAGCATTTACAT+CGG | 0.605456 | 4.2:-3510144 | None:intergenic |
| ATTGAAGAGTAACTAAGCAT+GGG | 0.607101 | 4.2:-3510104 | None:intergenic |
| AAGATATGTACCAGGAAACT+CGG | 0.608454 | 4.2:-3500944 | None:intergenic |
| AGAGCGTCCCGGATACAGAT+GGG | 0.609138 | 4.2:+3509968 | MS.gene06191:CDS |
| TTATTTGCAGAATAAAGTGA+CGG | 0.609693 | 4.2:+3500225 | MS.gene06191:intron |
| TCTACAACTATTCAGGATGT+GGG | 0.610031 | 4.2:+3503432 | MS.gene06191:CDS |
| TCATTTCATTAATCCCATCA+CGG | 0.612574 | 4.2:-3502372 | None:intergenic |
| GTATCCGGGACGCTCTGGCA+AGG | 0.615786 | 4.2:-3509961 | None:intergenic |
| ATATATGAAATGCATGTGAG+AGG | 0.617561 | 4.2:+3500895 | MS.gene06191:CDS |
| GAATATGGACATACAAAAGG+AGG | 0.618039 | 4.2:+3508518 | MS.gene06191:CDS |
| GACCCCGTCTTCTTGAGGAG+TGG | 0.621998 | 4.2:-3500060 | None:intergenic |
| GGTGCCACTCCTCAAGAAGA+CGG | 0.623962 | 4.2:+3500056 | MS.gene06191:CDS |
| AATGAAGCTCCTCATCAAAG+AGG | 0.627064 | 4.2:+3502390 | MS.gene06191:CDS |
| ATCAAAGAGGCACACAAGCG+AGG | 0.630952 | 4.2:+3502403 | MS.gene06191:CDS |
| AGCTCATTGAACTCATGACA+TGG | 0.632491 | 4.2:-3501705 | None:intergenic |
| ACAGCTGAAGGGAATGAGAA+GGG | 0.635794 | 4.2:+3502556 | MS.gene06191:CDS |
| TGTGTTTAGTTTGACTGGGA+AGG | 0.637186 | 4.2:+3500835 | MS.gene06191:intron |
| ACAGTTACAATGCTATTCAG+GGG | 0.651047 | 4.2:+3501736 | MS.gene06191:CDS |
| CAATGGCGGACTGCTTAAAG+GGG | 0.654129 | 4.2:-3504416 | None:intergenic |
| GCAATGTGTTTAGTTTGACT+GGG | 0.655343 | 4.2:+3500831 | MS.gene06191:intron |
| CCGACCAAATACCCCAGTGA+GGG | 0.656679 | 4.2:-3505559 | None:intergenic |
| GGCGGAACTTGGTCAAAAGG+CGG | 0.659867 | 4.2:-3508715 | None:intergenic |
| TTGGTCGGAATGGAATGGGA+AGG | 0.660527 | 4.2:+3505574 | MS.gene06191:CDS |
| GCTGAAGCCTGGGATGCTGG+AGG | 0.661627 | 4.2:+3505515 | MS.gene06191:CDS |
| GGTACCATACCAGCCATTTG+GGG | 0.663979 | 4.2:-3500710 | None:intergenic |
| ACTGTACGCCAGTTTATCAA+GGG | 0.666967 | 4.2:+3506533 | MS.gene06191:CDS |
| AACACCGACACGATTCCCAA+CGG | 0.668297 | 4.2:-3499961 | None:intergenic |
| ACGACACCAAGATATGTACC+AGG | 0.668568 | 4.2:-3500952 | None:intergenic |
| TAGTAGCTGGAACTGTGGAG+AGG | 0.681130 | 4.2:+3507036 | MS.gene06191:CDS |
| CAGTTACAATGCTATTCAGG+GGG | 0.682543 | 4.2:+3501737 | MS.gene06191:CDS |
| TGCCACTCCTCAAGAAGACG+GGG | 0.682576 | 4.2:+3500058 | MS.gene06191:CDS |
| AAGCTAAGCATTTACATCGG+GGG | 0.687980 | 4.2:-3510141 | None:intergenic |
| TTGGGTAACAGAAATGCACA+TGG | 0.689731 | 4.2:+3504195 | MS.gene06191:CDS |
| TACAGGGAGGAAGAAAACCA+TGG | 0.702341 | 4.2:+3506897 | MS.gene06191:intron |
| CAAGCTAAGCATTTACATCG+GGG | 0.707585 | 4.2:-3510142 | None:intergenic |
| CTGATCATATCAATCAATGG+CGG | 0.707861 | 4.2:-3504430 | None:intergenic |
| GTTGGCACTTTCCCTCACTG+GGG | 0.708819 | 4.2:+3505548 | MS.gene06191:CDS |
| TCAGCTGGCATACAAAACTG+TGG | 0.712260 | 4.2:+3502349 | MS.gene06191:CDS |
| ATGACTTCCCGACATCAGAG+AGG | 0.714408 | 4.2:+3508831 | MS.gene06191:CDS |
| CAATAGCGTGTATTACATGG+TGG | 0.718161 | 4.2:+3502606 | MS.gene06191:CDS |
| AAATCTGAAGAAGTCTGACG+AGG | 0.720742 | 4.2:-3508690 | None:intergenic |
| TCCGACCAAATACCCCAGTG+AGG | 0.722871 | 4.2:-3505560 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3499813 | 3510160 | 3499813 | ID=MS.gene06191 |
| chr4.2 | mRNA | 3499813 | 3510160 | 3499813 | ID=MS.gene06191.t1;Parent=MS.gene06191 |
| chr4.2 | exon | 3499813 | 3500154 | 3499813 | ID=MS.gene06191.t1.exon1;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3499813 | 3500154 | 3499813 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3500235 | 3500417 | 3500235 | ID=MS.gene06191.t1.exon2;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3500235 | 3500417 | 3500235 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3500656 | 3500748 | 3500656 | ID=MS.gene06191.t1.exon3;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3500656 | 3500748 | 3500656 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3500844 | 3500996 | 3500844 | ID=MS.gene06191.t1.exon4;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3500844 | 3500996 | 3500844 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3501675 | 3501766 | 3501675 | ID=MS.gene06191.t1.exon5;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3501675 | 3501766 | 3501675 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3502291 | 3502432 | 3502291 | ID=MS.gene06191.t1.exon6;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3502291 | 3502432 | 3502291 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3502529 | 3502636 | 3502529 | ID=MS.gene06191.t1.exon7;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3502529 | 3502636 | 3502529 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3503425 | 3503510 | 3503425 | ID=MS.gene06191.t1.exon8;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3503425 | 3503510 | 3503425 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3504192 | 3504263 | 3504192 | ID=MS.gene06191.t1.exon9;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3504192 | 3504263 | 3504192 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3504354 | 3504480 | 3504354 | ID=MS.gene06191.t1.exon10;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3504354 | 3504480 | 3504354 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3505509 | 3505595 | 3505509 | ID=MS.gene06191.t1.exon11;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3505509 | 3505595 | 3505509 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3506524 | 3506616 | 3506524 | ID=MS.gene06191.t1.exon12;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3506524 | 3506616 | 3506524 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3506902 | 3507057 | 3506902 | ID=MS.gene06191.t1.exon13;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3506902 | 3507057 | 3506902 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3507755 | 3507838 | 3507755 | ID=MS.gene06191.t1.exon14;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3507755 | 3507838 | 3507755 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3508491 | 3508571 | 3508491 | ID=MS.gene06191.t1.exon15;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3508491 | 3508571 | 3508491 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3508656 | 3508738 | 3508656 | ID=MS.gene06191.t1.exon16;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3508656 | 3508738 | 3508656 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3508808 | 3508925 | 3508808 | ID=MS.gene06191.t1.exon17;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3508808 | 3508925 | 3508808 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| chr4.2 | exon | 3509897 | 3510160 | 3509897 | ID=MS.gene06191.t1.exon18;Parent=MS.gene06191.t1 |
| chr4.2 | CDS | 3509897 | 3510160 | 3509897 | ID=cds.MS.gene06191.t1;Parent=MS.gene06191.t1 |
| Gene Sequence |
| Protein sequence |
