Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55868.t1 | XP_003630623.2 | 96.4 | 788 | 25 | 1 | 3 | 787 | 1 | 788 | 0.00E+00 | 1604.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55868.t1 | O04196 | 79.0 | 724 | 150 | 1 | 62 | 783 | 56 | 779 | 0.0e+00 | 1251.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55868.t1 | G7LIX1 | 96.4 | 788 | 25 | 1 | 3 | 787 | 1 | 788 | 0.0e+00 | 1604.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050122 | MS.gene55868 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene051360 | MS.gene55868 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene053318 | MS.gene55868 | 0.841044 | 6.03E-58 | -1.69E-46 |
| MS.gene055892 | MS.gene55868 | 0.833725 | 4.52E-56 | -1.69E-46 |
| MS.gene055893 | MS.gene55868 | 0.83351 | 5.12E-56 | -1.69E-46 |
| MS.gene055894 | MS.gene55868 | 0.846467 | 2.13E-59 | -1.69E-46 |
| MS.gene05601 | MS.gene55868 | 0.810593 | 1.07E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene55868 | 0.8044 | 2.20E-49 | -1.69E-46 |
| MS.gene058948 | MS.gene55868 | 0.820228 | 7.66E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene55868 | 0.813473 | 2.51E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38584 | MS.gene55868 | PPI |
| MS.gene013128 | MS.gene55868 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55868.t1 | MTR_8g101490 | 96.447 | 788 | 25 | 1 | 3 | 787 | 1 | 788 | 0.0 | 1591 |
| MS.gene55868.t1 | MTR_8g101490 | 96.215 | 634 | 21 | 1 | 3 | 633 | 1 | 634 | 0.0 | 1276 |
| MS.gene55868.t1 | MTR_3g099500 | 44.701 | 736 | 351 | 16 | 57 | 779 | 81 | 773 | 0.0 | 598 |
| MS.gene55868.t1 | MTR_3g099500 | 43.692 | 753 | 351 | 17 | 57 | 779 | 81 | 790 | 0.0 | 588 |
| MS.gene55868.t1 | MTR_7g094560 | 33.333 | 696 | 365 | 24 | 75 | 747 | 202 | 821 | 7.73e-99 | 327 |
| MS.gene55868.t1 | MTR_1g090693 | 23.315 | 549 | 286 | 22 | 171 | 635 | 281 | 778 | 5.51e-16 | 83.2 |
| MS.gene55868.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 306 | 504 | 1.37e-11 | 68.6 |
| MS.gene55868.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 306 | 504 | 2.01e-11 | 68.2 |
| MS.gene55868.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 303 | 501 | 2.17e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55868.t1 | AT2G39930 | 77.808 | 739 | 161 | 2 | 48 | 783 | 41 | 779 | 0.0 | 1233 |
| MS.gene55868.t1 | AT2G39930 | 78.768 | 617 | 128 | 2 | 48 | 661 | 41 | 657 | 0.0 | 1046 |
| MS.gene55868.t1 | AT2G39930 | 77.758 | 562 | 122 | 2 | 48 | 606 | 41 | 602 | 0.0 | 938 |
| MS.gene55868.t1 | AT4G09020 | 45.726 | 737 | 342 | 17 | 57 | 779 | 69 | 761 | 0.0 | 612 |
| MS.gene55868.t1 | AT1G03310 | 30.548 | 730 | 401 | 20 | 74 | 779 | 228 | 875 | 8.49e-96 | 318 |
| MS.gene55868.t1 | AT1G03310 | 30.548 | 730 | 401 | 20 | 74 | 779 | 228 | 875 | 8.49e-96 | 318 |
| MS.gene55868.t1 | AT5G04360 | 23.138 | 631 | 365 | 24 | 77 | 635 | 204 | 786 | 6.63e-17 | 86.3 |
| MS.gene55868.t1 | AT5G04360 | 23.138 | 631 | 365 | 24 | 77 | 635 | 204 | 786 | 6.63e-17 | 86.3 |
| MS.gene55868.t1 | AT5G03650 | 30.603 | 232 | 121 | 11 | 195 | 419 | 258 | 456 | 3.11e-14 | 77.4 |
| MS.gene55868.t1 | AT2G36390 | 26.407 | 231 | 132 | 10 | 195 | 419 | 293 | 491 | 1.47e-11 | 68.6 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTCACTGGGGTATT+TGG | 0.181610 | 4.3:+3742018 | MS.gene55868:CDS |
| CTACAGTTACAATGCTATTC+AGG | 0.204436 | 4.3:+3738189 | MS.gene55868:CDS |
| ATCAATGGCGGACGGCTTAA+AGG | 0.228542 | 4.3:-3740881 | None:intergenic |
| TGGAACAGAGTTAATGTATT+TGG | 0.249081 | 4.3:+3740821 | MS.gene55868:CDS |
| GTTATAAGAAGAGGAGAGTT+TGG | 0.251910 | 4.3:+3737102 | MS.gene55868:CDS |
| AACTCCTCTAAAAGAAATAA+TGG | 0.265535 | 4.3:-3739036 | None:intergenic |
| CTTCTTTGACCTTGAATTTG+AGG | 0.284584 | 4.3:-3736371 | None:intergenic |
| CTCTATGCTTATAAATTTGA+TGG | 0.295492 | 4.3:+3736771 | MS.gene55868:CDS |
| TGGCTTCACTCTAGCTGATT+TGG | 0.301346 | 4.3:+3743412 | MS.gene55868:CDS |
| GGGGAATTCTACAACTATTC+AGG | 0.301916 | 4.3:+3739888 | MS.gene55868:CDS |
| GGAGAAGCTTGATCACTTAA+AGG | 0.307380 | 4.3:+3737430 | MS.gene55868:CDS |
| GGGAGTTCCGATGATATATA+TGG | 0.316369 | 4.3:+3744954 | MS.gene55868:intron |
| TGGGAGTCCTAATTTGTATC+AGG | 0.317614 | 4.3:+3743058 | MS.gene55868:CDS |
| ATCATTGTTGTCTTCTCCAT+TGG | 0.320037 | 4.3:-3743462 | None:intergenic |
| TTATAAGAAGAGGAGAGTTT+GGG | 0.321726 | 4.3:+3737103 | MS.gene55868:CDS |
| GTCAGCAAGTCACCTTCTAT+TGG | 0.323135 | 4.3:-3740848 | None:intergenic |
| AGGTACCATACCAGCCATTT+GGG | 0.325178 | 4.3:-3737154 | None:intergenic |
| ATATATATGGGAGATGAATA+TGG | 0.330449 | 4.3:+3744967 | MS.gene55868:CDS |
| AGATAAACCTGATACAAATT+AGG | 0.337665 | 4.3:-3743065 | None:intergenic |
| ATCATATGGTGCTTTCTTGC+TGG | 0.344939 | 4.3:-3746470 | None:intergenic |
| TCTGTTGTGAATCTCGAAAT+TGG | 0.346786 | 4.3:-3736332 | None:intergenic |
| GTTTGGCATGTGTTTCTAAA+AGG | 0.352602 | 4.3:+3736732 | MS.gene55868:CDS |
| AAGGGTACAGATGGCTTTGC+TGG | 0.353599 | 4.3:+3743014 | MS.gene55868:CDS |
| TCAGACCAGTCTGGTGTTAC+AGG | 0.355192 | 4.3:-3745339 | None:intergenic |
| AATTTATAGTGGACTGCTTA+AGG | 0.368791 | 4.3:+3739952 | MS.gene55868:CDS |
| TCTCTCGTGCAACAGATATT+GGG | 0.369152 | 4.3:+3740640 | MS.gene55868:intron |
| TCAATGGCGGACGGCTTAAA+GGG | 0.370801 | 4.3:-3740880 | None:intergenic |
| CATCTGTACCCTTGATAAAC+TGG | 0.375594 | 4.3:-3743004 | None:intergenic |
| AGTCTGGTGTTACAGGAAAA+TGG | 0.377654 | 4.3:-3745332 | None:intergenic |
| AAGTTGGCACTTTCCCTCAC+TGG | 0.385401 | 4.3:+3742009 | MS.gene55868:CDS |
| TCGAGTAAGGCCGAGTTTCC+TGG | 0.387372 | 4.3:+3737389 | MS.gene55868:CDS |
| AAGGTACCATACCAGCCATT+TGG | 0.387541 | 4.3:-3737155 | None:intergenic |
| TTATTTCCGATGGGACAAAA+AGG | 0.389436 | 4.3:+3745125 | MS.gene55868:CDS |
| GAAGGTGACTTGCTGACAAT+TGG | 0.397727 | 4.3:+3740854 | MS.gene55868:CDS |
| TCATTGTTGTCTTCTCCATT+GGG | 0.398138 | 4.3:-3743461 | None:intergenic |
| GATCCATTGGTGAATAAAAC+AGG | 0.399169 | 4.3:+3736705 | MS.gene55868:CDS |
| TGACCTTGAATTTGAGGAAA+TGG | 0.399301 | 4.3:-3736365 | None:intergenic |
| ACTATAAATTTCCTTACAAC+GGG | 0.399791 | 4.3:-3739939 | None:intergenic |
| TAATTTCTTTCTTTCTCTCA+TGG | 0.403152 | 4.3:+3744271 | MS.gene55868:CDS |
| ACTAAGCATGGGATACATAT+TGG | 0.404759 | 4.3:-3746557 | None:intergenic |
| ATTGCAACCATCCCGTTGTA+AGG | 0.408121 | 4.3:+3739928 | MS.gene55868:CDS |
| TGCAATGTGTTTAGTTTGAC+TGG | 0.408898 | 4.3:+3737285 | MS.gene55868:intron |
| GAGTTTCCTGGTACATATCT+TGG | 0.413063 | 4.3:+3737401 | MS.gene55868:CDS |
| GGCACACAAGCGAGGAATAG+AGG | 0.424028 | 4.3:+3738866 | MS.gene55868:CDS |
| GAGAGGTTCCCATCTGTATC+CGG | 0.425817 | 4.3:-3746440 | None:intergenic |
| TCTTTCTCTCATGGTTTCCC+AGG | 0.430118 | 4.3:+3744280 | MS.gene55868:CDS |
| ACTCCTCTAAAAGAAATAAT+GGG | 0.435507 | 4.3:-3739035 | None:intergenic |
| ATATCTCTTCCGCGAAGATC+AGG | 0.436192 | 4.3:-3746502 | None:intergenic |
| AGCCTTTGGAAACTTGCAAT+TGG | 0.436280 | 4.3:-3736462 | None:intergenic |
| GTATTTGGTGCTCCAATAGA+AGG | 0.437044 | 4.3:+3740836 | MS.gene55868:CDS |
| TCACCATTTCCTCAAATTCA+AGG | 0.439664 | 4.3:+3736362 | MS.gene55868:CDS |
| ATAGCTGAAGCCTGGGATGC+TGG | 0.441423 | 4.3:+3741975 | MS.gene55868:CDS |
| AGAAGAAAACCTTCGCCGTT+GGG | 0.443010 | 4.3:+3736389 | MS.gene55868:CDS |
| CGTTGTAAGGAAATTTATAG+TGG | 0.443119 | 4.3:+3739941 | MS.gene55868:CDS |
| TAGGACCTGATGGTAATTGC+TGG | 0.443531 | 4.3:+3737130 | MS.gene55868:CDS |
| CTGATGTCGGGAAGTCATCT+AGG | 0.444177 | 4.3:-3745290 | None:intergenic |
| CTATTATGACCAGGAGTAGC+AGG | 0.449828 | 4.3:+3740705 | MS.gene55868:CDS |
| TATAGCTTATAGCTGAAGCC+TGG | 0.452561 | 4.3:+3741967 | MS.gene55868:intron |
| GAGAAAATCACAATAGTAGC+TGG | 0.454266 | 4.3:+3743486 | MS.gene55868:CDS |
| CCCTCACTGGGGTATTTGGT+CGG | 0.455085 | 4.3:+3742022 | MS.gene55868:CDS |
| AGTGTTGTAGAGTGAGAAAG+AGG | 0.455306 | 4.3:-3736289 | None:intergenic |
| TGCAGCTTAATTATTTCCGA+TGG | 0.457344 | 4.3:+3745115 | MS.gene55868:intron |
| GAGTGAATTGAGTGAGTAAA+TGG | 0.458844 | 4.3:-3736533 | None:intergenic |
| GCCTTTGAAATATCCACAAA+AGG | 0.460159 | 4.3:+3737319 | MS.gene55868:CDS |
| GTATTTGGTCGGAATGGAAT+GGG | 0.462316 | 4.3:+3742033 | MS.gene55868:CDS |
| CATTGGTGAAAAGTAATTGA+TGG | 0.464554 | 4.3:-3738769 | None:intergenic |
| CATCTGTATCCGGGACGCTC+TGG | 0.465289 | 4.3:-3746430 | None:intergenic |
| GTAGGGTGAAGGGTAGCCTT+TGG | 0.465735 | 4.3:-3736476 | None:intergenic |
| ACAAGCTAAGCATTTACATC+GGG | 0.468285 | 4.3:-3746607 | None:intergenic |
| TGAATAAAACAGGATGTGTT+TGG | 0.471312 | 4.3:+3736715 | MS.gene55868:CDS |
| AGAGGAGAGTTTGGGGAAGT+AGG | 0.474230 | 4.3:+3737111 | MS.gene55868:CDS |
| GCTGATGAGTATCTTATCAT+TGG | 0.475818 | 4.3:-3738786 | None:intergenic |
| ATTACTGGAGCAGGTTATCA+TGG | 0.476022 | 4.3:+3738971 | MS.gene55868:intron |
| ACCTTCACTCCACGAAGTAT+TGG | 0.476206 | 4.3:-3740923 | None:intergenic |
| GTACAGGCCTCCAGCATCCC+AGG | 0.477191 | 4.3:-3741985 | None:intergenic |
| CACTGTACGCCAGTTTATCA+AGG | 0.477869 | 4.3:+3742995 | MS.gene55868:CDS |
| GTACATTACTCTTGATCCAT+TGG | 0.478751 | 4.3:+3736692 | MS.gene55868:CDS |
| TGGTAATTGCTGGCCCCAAA+TGG | 0.480850 | 4.3:+3737140 | MS.gene55868:CDS |
| TTCTACAACTATTCAGGATG+TGG | 0.486104 | 4.3:+3739894 | MS.gene55868:CDS |
| AGTTGGCACTTTCCCTCACT+GGG | 0.493678 | 4.3:+3742010 | MS.gene55868:CDS |
| AGTACCTCCTCATGATCAAA+AGG | 0.494764 | 4.3:-3737174 | None:intergenic |
| ACTGAAGCCTCTCTGATGTC+GGG | 0.499110 | 4.3:-3745302 | None:intergenic |
| GGTATTTGGTCGGAATGGAA+TGG | 0.501264 | 4.3:+3742032 | MS.gene55868:CDS |
| ACTGGCGGAACTTGGTCAAA+AGG | 0.502084 | 4.3:-3745182 | None:intergenic |
| TACAAAGCATGAGTCGAGTA+AGG | 0.506814 | 4.3:+3737376 | MS.gene55868:CDS |
| CACTGAAGCCTCTCTGATGT+CGG | 0.508243 | 4.3:-3745303 | None:intergenic |
| GCATTTGCTGAATGTATTTG+TGG | 0.508395 | 4.3:+3743038 | MS.gene55868:CDS |
| TACAGTTACAATGCTATTCA+GGG | 0.511531 | 4.3:+3738190 | MS.gene55868:CDS |
| GATGAATATGGACATACAAA+AGG | 0.512112 | 4.3:+3744979 | MS.gene55868:CDS |
| GGAAAGTGCCAACTTGGTAC+AGG | 0.512943 | 4.3:-3742001 | None:intergenic |
| GGAGTTCCGATGATATATAT+GGG | 0.517870 | 4.3:+3744955 | MS.gene55868:CDS |
| TGGGGCCAGCAATTACCATC+AGG | 0.521370 | 4.3:-3737135 | None:intergenic |
| TGCAGGGAATGTGAGTCGCT+TGG | 0.523500 | 4.3:+3745267 | MS.gene55868:intron |
| AGTGAGGGAAAGTGCCAACT+TGG | 0.524104 | 4.3:-3742007 | None:intergenic |
| CGGCTAGATTCAGACCAGTC+TGG | 0.526153 | 4.3:-3745348 | None:intergenic |
| ATCTTGCTTCTATTATGACC+AGG | 0.526714 | 4.3:+3740696 | MS.gene55868:CDS |
| CTGGCCCCAAATGGCTGGTA+TGG | 0.529820 | 4.3:+3737149 | MS.gene55868:CDS |
| CACTATAAATTTCCTTACAA+CGG | 0.530840 | 4.3:-3739940 | None:intergenic |
| AACCTTGTATGTGCTCATGA+TGG | 0.532079 | 4.3:+3743392 | MS.gene55868:CDS |
| GAGTACTTACTGGCGGAACT+TGG | 0.533315 | 4.3:-3745190 | None:intergenic |
| GTGCCTCAGTAAAGAAATTG+AGG | 0.534102 | 4.3:+3744234 | MS.gene55868:CDS |
| TTCTTGAGGAGTGGCACCGT+AGG | 0.535813 | 4.3:-3736494 | None:intergenic |
| AAGAAGAAAACCTTCGCCGT+TGG | 0.535917 | 4.3:+3736388 | MS.gene55868:CDS |
| ATGATAAGATACTCATCAGC+TGG | 0.536295 | 4.3:+3738789 | MS.gene55868:CDS |
| AGTATATAACCTGCTACTCC+TGG | 0.536428 | 4.3:-3740714 | None:intergenic |
| TATAAGAAGAGGAGAGTTTG+GGG | 0.537514 | 4.3:+3737104 | MS.gene55868:CDS |
| GATTGAAGAGTAACTAAGCA+TGG | 0.540141 | 4.3:-3746569 | None:intergenic |
| ACTCAGATGGACTCGGTGAA+GGG | 0.540328 | 4.3:+3746355 | MS.gene55868:intron |
| TCAGGTGTGAGAAAATCATA+TGG | 0.541452 | 4.3:-3746484 | None:intergenic |
| CATTTGCTGAATGTATTTGT+GGG | 0.541483 | 4.3:+3743039 | MS.gene55868:CDS |
| GATTAGGCAGTTATAAGAAG+AGG | 0.541788 | 4.3:+3737093 | MS.gene55868:intron |
| CACAATAGTAGCTGGAACTG+TGG | 0.542471 | 4.3:+3743494 | MS.gene55868:CDS |
| AACTCAGATGGACTCGGTGA+AGG | 0.542854 | 4.3:+3746354 | MS.gene55868:intron |
| ATACTGATCATATCAATCAA+TGG | 0.544584 | 4.3:-3740896 | None:intergenic |
| GTGCCACTCCTCAAGAAGAC+GGG | 0.548138 | 4.3:+3736500 | MS.gene55868:CDS |
| CAGTTTATCAAGGGTACAGA+TGG | 0.549849 | 4.3:+3743005 | MS.gene55868:CDS |
| CAGAGCGTCCCGGATACAGA+TGG | 0.550274 | 4.3:+3746431 | MS.gene55868:CDS |
| TCCAATACTTCGTGGAGTGA+AGG | 0.550686 | 4.3:+3740922 | MS.gene55868:CDS |
| AATTGCTGGCCCCAAATGGC+TGG | 0.551029 | 4.3:+3737144 | MS.gene55868:CDS |
| TTTCTCACACCTGATCTTCG+CGG | 0.551398 | 4.3:+3746493 | MS.gene55868:CDS |
| AATGGAGAAGACAACAATGA+TGG | 0.552146 | 4.3:+3743464 | MS.gene55868:CDS |
| GTATTACATGGTGGCACCCA+AGG | 0.555302 | 4.3:+3739070 | MS.gene55868:CDS |
| ATGTCATGAGTTCAATGAGC+TGG | 0.556145 | 4.3:+3738162 | MS.gene55868:CDS |
| TAAATTTCCTTACAACGGGA+TGG | 0.557866 | 4.3:-3739935 | None:intergenic |
| GCTTTGATCAACAATGGCAA+TGG | 0.558374 | 4.3:+3736243 | None:intergenic |
| GGAGTGGCACCGTAGGGTGA+AGG | 0.558934 | 4.3:-3736487 | None:intergenic |
| ACTGGGGTATTTGGTCGGAA+TGG | 0.560039 | 4.3:+3742027 | MS.gene55868:CDS |
| GCAGCTTAATTATTTCCGAT+GGG | 0.560112 | 4.3:+3745116 | MS.gene55868:intron |
| CGCCAATTGCAAGTTTCCAA+AGG | 0.561119 | 4.3:+3736460 | MS.gene55868:CDS |
| GAAAGAGGAGAGAGAATGTG+AGG | 0.563347 | 4.3:-3736274 | None:intergenic |
| ACAAGGTTAATACTATTCCA+TGG | 0.565220 | 4.3:-3743377 | None:intergenic |
| TTCTTGCTGGTGTCTACGAG+AGG | 0.566153 | 4.3:-3746457 | None:intergenic |
| TGACAATAGCGTGTATTACA+TGG | 0.566359 | 4.3:+3739058 | MS.gene55868:CDS |
| ATAGCTTATAGCTGAAGCCT+GGG | 0.567230 | 4.3:+3741968 | MS.gene55868:intron |
| TTTCCTCAATTTCTTTACTG+AGG | 0.567283 | 4.3:-3744237 | None:intergenic |
| AGTATTGATCCAATACTTCG+TGG | 0.568695 | 4.3:+3740914 | MS.gene55868:CDS |
| GACACGATTCCCAACGGCGA+AGG | 0.568849 | 4.3:-3736398 | None:intergenic |
| TGAATTTGAGGAAATGGTGA+TGG | 0.569036 | 4.3:-3736359 | None:intergenic |
| GTTACCTTGCCAGAGCGTCC+CGG | 0.569481 | 4.3:+3746421 | MS.gene55868:CDS |
| TATATGAAATGCATGTGAGA+GGG | 0.570887 | 4.3:+3737351 | MS.gene55868:CDS |
| CCAGGGTAAAAGCCACAAAA+CGG | 0.572393 | 4.3:-3745368 | None:intergenic |
| AAATTGACCCCGTCTTCTTG+AGG | 0.573022 | 4.3:-3736508 | None:intergenic |
| AAAGGCTACCCTTCACCCTA+CGG | 0.576668 | 4.3:+3736478 | MS.gene55868:CDS |
| TCTGGCAAGGTAACAGTGAA+AGG | 0.578133 | 4.3:-3746412 | None:intergenic |
| AAAATAAACTCAGATGGACT+CGG | 0.579909 | 4.3:+3746348 | MS.gene55868:intron |
| AGCCATCATGAGCACATACA+AGG | 0.581009 | 4.3:-3743394 | None:intergenic |
| TCAGAGAGGCTTCAGTGGCA+TGG | 0.583978 | 4.3:+3745309 | MS.gene55868:CDS |
| TCTTGAGGAGTGGCACCGTA+GGG | 0.585196 | 4.3:-3736493 | None:intergenic |
| TCATAGTAGTGACCGTGTTG+AGG | 0.585274 | 4.3:-3736804 | None:intergenic |
| TCATCTCCCATATATATCAT+CGG | 0.586946 | 4.3:-3744961 | None:intergenic |
| AGAGGTTCCCATCTGTATCC+GGG | 0.587326 | 4.3:-3746439 | None:intergenic |
| CACGTAATTATCATGACAGT+AGG | 0.588746 | 4.3:-3745016 | None:intergenic |
| GCTTGTGTGCCTCTTTGATG+AGG | 0.589192 | 4.3:-3738854 | None:intergenic |
| GAGTGGCACCGTAGGGTGAA+GGG | 0.589871 | 4.3:-3736486 | None:intergenic |
| TTTGGGGAAGTAGGACCTGA+TGG | 0.592579 | 4.3:+3737120 | MS.gene55868:CDS |
| CGACATCAGAGAGGCTTCAG+TGG | 0.592621 | 4.3:+3745304 | MS.gene55868:CDS |
| AATAAGCATAACTTGCCCAA+TGG | 0.595993 | 4.3:+3743446 | MS.gene55868:CDS |
| GTAACAGAAATGCACGTGGA+TGG | 0.600720 | 4.3:+3740662 | MS.gene55868:CDS |
| TTCGCCGTTGGGAATCGTGT+CGG | 0.601538 | 4.3:+3736400 | MS.gene55868:CDS |
| TCATTTCATTAATCACATCA+CGG | 0.602414 | 4.3:-3738827 | None:intergenic |
| TACAGCTGAAGGGAATGAGA+AGG | 0.602790 | 4.3:+3739010 | MS.gene55868:CDS |
| TGGTACATATCTTGGTGTCG+TGG | 0.603299 | 4.3:+3737409 | MS.gene55868:CDS |
| GCTGGAGGCCTGTACCAAGT+TGG | 0.603543 | 4.3:+3741993 | MS.gene55868:CDS |
| ATTTGAGGAAATGGTGATGG+AGG | 0.605171 | 4.3:-3736356 | None:intergenic |
| TACAAGCTAAGCATTTACAT+CGG | 0.605456 | 4.3:-3746608 | None:intergenic |
| ATTGAAGAGTAACTAAGCAT+GGG | 0.607101 | 4.3:-3746568 | None:intergenic |
| AAGATATGTACCAGGAAACT+CGG | 0.608454 | 4.3:-3737399 | None:intergenic |
| AGAGCGTCCCGGATACAGAT+GGG | 0.609138 | 4.3:+3746432 | MS.gene55868:CDS |
| TTATTTGCAGAATAAAGTGA+CGG | 0.609693 | 4.3:+3736668 | MS.gene55868:intron |
| TCTACAACTATTCAGGATGT+GGG | 0.610031 | 4.3:+3739895 | MS.gene55868:CDS |
| GTATCCGGGACGCTCTGGCA+AGG | 0.615786 | 4.3:-3746425 | None:intergenic |
| ATATATGAAATGCATGTGAG+AGG | 0.617561 | 4.3:+3737350 | MS.gene55868:CDS |
| GAATATGGACATACAAAAGG+AGG | 0.618039 | 4.3:+3744982 | MS.gene55868:CDS |
| GACCCCGTCTTCTTGAGGAG+TGG | 0.621998 | 4.3:-3736503 | None:intergenic |
| GGTGCCACTCCTCAAGAAGA+CGG | 0.623962 | 4.3:+3736499 | MS.gene55868:CDS |
| AATGAAGCTCCTCATCAAAG+AGG | 0.627064 | 4.3:+3738845 | MS.gene55868:CDS |
| ATCAAAGAGGCACACAAGCG+AGG | 0.630952 | 4.3:+3738858 | MS.gene55868:CDS |
| AGCTCATTGAACTCATGACA+TGG | 0.632491 | 4.3:-3738160 | None:intergenic |
| ACAGCTGAAGGGAATGAGAA+GGG | 0.635794 | 4.3:+3739011 | MS.gene55868:CDS |
| TGTGTTTAGTTTGACTGGGA+AGG | 0.637186 | 4.3:+3737290 | MS.gene55868:intron |
| CAATGGCGGACGGCTTAAAG+GGG | 0.637676 | 4.3:-3740879 | None:intergenic |
| ACAGTTACAATGCTATTCAG+GGG | 0.651047 | 4.3:+3738191 | MS.gene55868:CDS |
| GCAATGTGTTTAGTTTGACT+GGG | 0.655343 | 4.3:+3737286 | MS.gene55868:intron |
| CCGACCAAATACCCCAGTGA+GGG | 0.656679 | 4.3:-3742022 | None:intergenic |
| TCATATCAATCAATGGCGGA+CGG | 0.656959 | 4.3:-3740889 | None:intergenic |
| GGCGGAACTTGGTCAAAAGG+CGG | 0.659867 | 4.3:-3745179 | None:intergenic |
| TTGGTCGGAATGGAATGGGA+AGG | 0.660527 | 4.3:+3742037 | MS.gene55868:CDS |
| GCTGAAGCCTGGGATGCTGG+AGG | 0.661627 | 4.3:+3741978 | MS.gene55868:CDS |
| GGTACCATACCAGCCATTTG+GGG | 0.663979 | 4.3:-3737153 | None:intergenic |
| ACTGTACGCCAGTTTATCAA+GGG | 0.666967 | 4.3:+3742996 | MS.gene55868:CDS |
| AACACCGACACGATTCCCAA+CGG | 0.668297 | 4.3:-3736404 | None:intergenic |
| ACGACACCAAGATATGTACC+AGG | 0.668568 | 4.3:-3737407 | None:intergenic |
| TAGTAGCTGGAACTGTGGAG+AGG | 0.681130 | 4.3:+3743499 | MS.gene55868:CDS |
| CAGTTACAATGCTATTCAGG+GGG | 0.682543 | 4.3:+3738192 | MS.gene55868:CDS |
| TGCCACTCCTCAAGAAGACG+GGG | 0.682576 | 4.3:+3736501 | MS.gene55868:CDS |
| AAGCTAAGCATTTACATCGG+GGG | 0.687980 | 4.3:-3746605 | None:intergenic |
| TACAGGGAGGAAGAAAACCA+TGG | 0.702341 | 4.3:+3743360 | MS.gene55868:intron |
| CAAGCTAAGCATTTACATCG+GGG | 0.707585 | 4.3:-3746606 | None:intergenic |
| GTTGGCACTTTCCCTCACTG+GGG | 0.708819 | 4.3:+3742011 | MS.gene55868:CDS |
| CTGATCATATCAATCAATGG+CGG | 0.710344 | 4.3:-3740893 | None:intergenic |
| TCAGCTGGCATACAAAACTG+TGG | 0.712260 | 4.3:+3738804 | MS.gene55868:CDS |
| ATGACTTCCCGACATCAGAG+AGG | 0.714408 | 4.3:+3745295 | MS.gene55868:CDS |
| CAATAGCGTGTATTACATGG+TGG | 0.718161 | 4.3:+3739061 | MS.gene55868:CDS |
| AAATCTGAAGAAGTCTGACG+AGG | 0.720742 | 4.3:-3745154 | None:intergenic |
| TCCGACCAAATACCCCAGTG+AGG | 0.722871 | 4.3:-3742023 | None:intergenic |
| TTGGGTAACAGAAATGCACG+TGG | 0.738443 | 4.3:+3740658 | MS.gene55868:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3736256 | 3746624 | 3736256 | ID=MS.gene55868 |
| chr4.3 | mRNA | 3736256 | 3746624 | 3736256 | ID=MS.gene55868.t1;Parent=MS.gene55868 |
| chr4.3 | exon | 3736256 | 3736597 | 3736256 | ID=MS.gene55868.t1.exon1;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3736256 | 3736597 | 3736256 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3736678 | 3736860 | 3736678 | ID=MS.gene55868.t1.exon2;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3736678 | 3736860 | 3736678 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3737099 | 3737191 | 3737099 | ID=MS.gene55868.t1.exon3;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3737099 | 3737191 | 3737099 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3737299 | 3737451 | 3737299 | ID=MS.gene55868.t1.exon4;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3737299 | 3737451 | 3737299 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3738130 | 3738221 | 3738130 | ID=MS.gene55868.t1.exon5;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3738130 | 3738221 | 3738130 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3738746 | 3738887 | 3738746 | ID=MS.gene55868.t1.exon6;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3738746 | 3738887 | 3738746 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3738984 | 3739091 | 3738984 | ID=MS.gene55868.t1.exon7;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3738984 | 3739091 | 3738984 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3739888 | 3739973 | 3739888 | ID=MS.gene55868.t1.exon8;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3739888 | 3739973 | 3739888 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3740655 | 3740726 | 3740655 | ID=MS.gene55868.t1.exon9;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3740655 | 3740726 | 3740655 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3740817 | 3740943 | 3740817 | ID=MS.gene55868.t1.exon10;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3740817 | 3740943 | 3740817 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3741972 | 3742058 | 3741972 | ID=MS.gene55868.t1.exon11;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3741972 | 3742058 | 3741972 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3742987 | 3743079 | 3742987 | ID=MS.gene55868.t1.exon12;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3742987 | 3743079 | 3742987 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3743365 | 3743520 | 3743365 | ID=MS.gene55868.t1.exon13;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3743365 | 3743520 | 3743365 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3744218 | 3744301 | 3744218 | ID=MS.gene55868.t1.exon14;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3744218 | 3744301 | 3744218 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3744955 | 3745035 | 3744955 | ID=MS.gene55868.t1.exon15;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3744955 | 3745035 | 3744955 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3745120 | 3745202 | 3745120 | ID=MS.gene55868.t1.exon16;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3745120 | 3745202 | 3745120 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3745272 | 3745389 | 3745272 | ID=MS.gene55868.t1.exon17;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3745272 | 3745389 | 3745272 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| chr4.3 | exon | 3746361 | 3746624 | 3746361 | ID=MS.gene55868.t1.exon18;Parent=MS.gene55868.t1 |
| chr4.3 | CDS | 3746361 | 3746624 | 3746361 | ID=cds.MS.gene55868.t1;Parent=MS.gene55868.t1 |
| Gene Sequence |
| Protein sequence |
