Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013131.t1 | XP_003602834.1 | 98 | 445 | 9 | 0 | 380 | 824 | 102 | 546 | 6.90E-253 | 883.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013131.t1 | Q8RWT8 | 73.4 | 443 | 118 | 0 | 381 | 823 | 70 | 512 | 1.8e-193 | 677.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013131.t1 | G7J3Z0 | 98.0 | 445 | 9 | 0 | 380 | 824 | 102 | 546 | 5.0e-253 | 883.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055573 | MS.gene013131 | PPI |
| MS.gene013131 | MS.gene005227 | PPI |
| MS.gene013131 | MS.gene056036 | PPI |
| MS.gene44095 | MS.gene013131 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013131.t1 | MTR_3g099470 | 97.978 | 445 | 9 | 0 | 380 | 824 | 102 | 546 | 0.0 | 913 |
| MS.gene013131.t1 | MTR_3g099470 | 97.746 | 355 | 8 | 0 | 380 | 734 | 102 | 456 | 0.0 | 726 |
| MS.gene013131.t1 | MTR_3g099460 | 96.073 | 382 | 14 | 1 | 1 | 381 | 1 | 382 | 0.0 | 721 |
| MS.gene013131.t1 | MTR_3g099460 | 94.241 | 382 | 14 | 2 | 1 | 381 | 1 | 375 | 0.0 | 699 |
| MS.gene013131.t1 | MTR_3g099460 | 95.611 | 319 | 13 | 1 | 64 | 381 | 1 | 319 | 0.0 | 591 |
| MS.gene013131.t1 | MTR_3g099460 | 95.318 | 299 | 13 | 1 | 1 | 298 | 1 | 299 | 0.0 | 554 |
| MS.gene013131.t1 | MTR_3g099460 | 92.977 | 299 | 13 | 2 | 1 | 298 | 1 | 292 | 0.0 | 533 |
| MS.gene013131.t1 | MTR_5g087710 | 61.141 | 368 | 140 | 2 | 14 | 380 | 16 | 381 | 2.27e-160 | 472 |
| MS.gene013131.t1 | MTR_3g079180 | 58.201 | 378 | 155 | 2 | 4 | 380 | 1 | 376 | 8.63e-155 | 457 |
| MS.gene013131.t1 | MTR_3g089940 | 49.864 | 367 | 179 | 4 | 16 | 381 | 9 | 371 | 2.47e-117 | 360 |
| MS.gene013131.t1 | MTR_3g089940 | 49.591 | 367 | 180 | 4 | 16 | 381 | 9 | 371 | 3.59e-117 | 360 |
| MS.gene013131.t1 | MTR_3g089977 | 49.319 | 367 | 181 | 4 | 16 | 381 | 9 | 371 | 5.39e-117 | 360 |
| MS.gene013131.t1 | MTR_7g068330 | 50.798 | 376 | 177 | 6 | 10 | 381 | 7 | 378 | 5.49e-116 | 357 |
| MS.gene013131.t1 | MTR_6g068930 | 50.959 | 365 | 172 | 3 | 16 | 380 | 10 | 367 | 2.25e-114 | 353 |
| MS.gene013131.t1 | MTR_3g089970 | 48.774 | 367 | 183 | 4 | 16 | 381 | 10 | 372 | 2.88e-113 | 350 |
| MS.gene013131.t1 | MTR_7g068320 | 51.475 | 373 | 172 | 7 | 14 | 381 | 18 | 386 | 3.84e-113 | 350 |
| MS.gene013131.t1 | MTR_7g099040 | 47.268 | 366 | 188 | 4 | 16 | 380 | 10 | 371 | 1.06e-112 | 348 |
| MS.gene013131.t1 | MTR_1g069430 | 47.671 | 365 | 186 | 4 | 16 | 379 | 8 | 368 | 1.38e-112 | 348 |
| MS.gene013131.t1 | MTR_3g089940 | 49.702 | 336 | 164 | 4 | 16 | 350 | 9 | 340 | 5.10e-104 | 325 |
| MS.gene013131.t1 | MTR_3g089940 | 49.405 | 336 | 165 | 4 | 16 | 350 | 9 | 340 | 1.02e-103 | 324 |
| MS.gene013131.t1 | MTR_3g079170 | 56.089 | 271 | 104 | 2 | 110 | 379 | 25 | 281 | 2.14e-102 | 318 |
| MS.gene013131.t1 | MTR_5g045710 | 46.216 | 370 | 185 | 7 | 13 | 378 | 5 | 364 | 3.22e-101 | 318 |
| MS.gene013131.t1 | MTR_0001s0660 | 44.780 | 364 | 188 | 7 | 16 | 376 | 8 | 361 | 6.04e-100 | 318 |
| MS.gene013131.t1 | MTR_1g082850 | 36.041 | 394 | 228 | 9 | 428 | 816 | 52 | 426 | 3.48e-71 | 241 |
| MS.gene013131.t1 | MTR_5g045710 | 44.792 | 288 | 148 | 6 | 95 | 378 | 1 | 281 | 6.14e-71 | 235 |
| MS.gene013131.t1 | MTR_8g095220 | 29.178 | 377 | 250 | 10 | 12 | 380 | 48 | 415 | 7.29e-34 | 135 |
| MS.gene013131.t1 | MTR_8g095220 | 29.644 | 253 | 167 | 5 | 12 | 257 | 48 | 296 | 1.73e-25 | 108 |
| MS.gene013131.t1 | MTR_6g465010 | 25.485 | 361 | 223 | 12 | 30 | 379 | 11 | 336 | 3.82e-21 | 96.3 |
| MS.gene013131.t1 | MTR_6g466320 | 25.648 | 347 | 212 | 12 | 44 | 379 | 41 | 352 | 5.63e-21 | 95.9 |
| MS.gene013131.t1 | MTR_6g465010 | 25.648 | 347 | 212 | 12 | 44 | 379 | 41 | 352 | 5.63e-21 | 95.9 |
| MS.gene013131.t1 | MTR_7g029025 | 35.333 | 150 | 64 | 5 | 669 | 816 | 123 | 241 | 3.15e-16 | 80.9 |
| MS.gene013131.t1 | MTR_5g031300 | 27.385 | 325 | 173 | 14 | 44 | 349 | 40 | 320 | 2.48e-13 | 72.8 |
| MS.gene013131.t1 | MTR_5g031360 | 26.791 | 321 | 180 | 12 | 44 | 349 | 41 | 321 | 2.94e-12 | 69.7 |
| MS.gene013131.t1 | MTR_4g115300 | 26.190 | 378 | 201 | 17 | 44 | 402 | 39 | 357 | 4.49e-12 | 68.9 |
| MS.gene013131.t1 | MTR_8g092630 | 26.984 | 315 | 172 | 10 | 44 | 342 | 96 | 368 | 5.37e-11 | 65.9 |
| MS.gene013131.t1 | MTR_1g025950 | 32.192 | 146 | 81 | 5 | 44 | 188 | 38 | 166 | 5.68e-11 | 65.5 |
| MS.gene013131.t1 | MTR_8g068190 | 30.667 | 150 | 78 | 5 | 44 | 188 | 39 | 167 | 7.23e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013131.t1 | AT1G11870 | 70.955 | 513 | 131 | 4 | 314 | 823 | 13 | 510 | 0.0 | 737 |
| MS.gene013131.t1 | AT1G11870 | 70.760 | 513 | 134 | 4 | 314 | 823 | 13 | 512 | 0.0 | 737 |
| MS.gene013131.t1 | AT1G11870 | 80.423 | 378 | 74 | 0 | 446 | 823 | 1 | 378 | 0.0 | 640 |
| MS.gene013131.t1 | AT1G11870 | 67.580 | 438 | 124 | 5 | 314 | 746 | 13 | 437 | 0.0 | 591 |
| MS.gene013131.t1 | AT1G11870 | 68.372 | 430 | 120 | 4 | 314 | 740 | 13 | 429 | 0.0 | 591 |
| MS.gene013131.t1 | AT1G11870 | 66.667 | 399 | 117 | 4 | 314 | 709 | 13 | 398 | 0.0 | 528 |
| MS.gene013131.t1 | AT1G22430 | 64.499 | 369 | 129 | 2 | 14 | 381 | 12 | 379 | 1.56e-173 | 506 |
| MS.gene013131.t1 | AT1G22430 | 64.499 | 369 | 129 | 2 | 14 | 381 | 12 | 379 | 1.56e-173 | 506 |
| MS.gene013131.t1 | AT1G22440 | 64.770 | 369 | 128 | 2 | 14 | 381 | 10 | 377 | 3.83e-172 | 502 |
| MS.gene013131.t1 | AT4G22110 | 63.686 | 369 | 132 | 2 | 14 | 381 | 13 | 380 | 1.02e-169 | 496 |
| MS.gene013131.t1 | AT4G22110 | 63.686 | 369 | 132 | 2 | 14 | 381 | 13 | 380 | 1.02e-169 | 496 |
| MS.gene013131.t1 | AT5G42250 | 60.434 | 369 | 142 | 3 | 14 | 380 | 15 | 381 | 1.42e-158 | 467 |
| MS.gene013131.t1 | AT1G22430 | 66.667 | 285 | 93 | 2 | 14 | 297 | 12 | 295 | 8.78e-135 | 403 |
| MS.gene013131.t1 | AT1G64710 | 50.798 | 376 | 177 | 6 | 10 | 381 | 2 | 373 | 8.32e-121 | 370 |
| MS.gene013131.t1 | AT1G77120 | 50.681 | 367 | 176 | 4 | 16 | 381 | 8 | 370 | 1.54e-119 | 366 |
| MS.gene013131.t1 | AT1G22430 | 65.000 | 260 | 89 | 2 | 14 | 272 | 12 | 270 | 1.71e-118 | 360 |
| MS.gene013131.t1 | AT1G22430 | 65.000 | 260 | 89 | 2 | 14 | 272 | 12 | 270 | 1.71e-118 | 360 |
| MS.gene013131.t1 | AT1G32780 | 48.819 | 381 | 184 | 4 | 10 | 381 | 3 | 381 | 3.91e-115 | 355 |
| MS.gene013131.t1 | AT4G22110 | 65.490 | 255 | 86 | 2 | 14 | 267 | 13 | 266 | 1.59e-113 | 347 |
| MS.gene013131.t1 | AT5G24760 | 50.000 | 366 | 174 | 5 | 16 | 380 | 14 | 371 | 1.75e-113 | 350 |
| MS.gene013131.t1 | AT1G64710 | 50.565 | 354 | 167 | 6 | 32 | 381 | 1 | 350 | 2.20e-113 | 349 |
| MS.gene013131.t1 | AT5G43940 | 48.219 | 365 | 184 | 4 | 16 | 379 | 8 | 368 | 4.77e-113 | 349 |
| MS.gene013131.t1 | AT5G43940 | 47.645 | 361 | 184 | 4 | 20 | 379 | 24 | 380 | 5.47e-110 | 342 |
| MS.gene013131.t1 | AT5G24760 | 49.714 | 350 | 167 | 5 | 32 | 380 | 1 | 342 | 1.64e-106 | 332 |
| MS.gene013131.t1 | AT5G24760 | 49.714 | 350 | 167 | 5 | 32 | 380 | 1 | 342 | 1.64e-106 | 332 |
| MS.gene013131.t1 | AT1G64710 | 49.669 | 302 | 145 | 5 | 84 | 381 | 6 | 304 | 2.61e-90 | 287 |
| MS.gene013131.t1 | AT5G27470 | 36.869 | 396 | 230 | 8 | 429 | 816 | 46 | 429 | 3.09e-75 | 252 |
| MS.gene013131.t1 | AT5G24760 | 50.806 | 248 | 118 | 4 | 134 | 380 | 13 | 257 | 3.63e-72 | 238 |
| MS.gene013131.t1 | AT5G63620 | 28.455 | 369 | 249 | 8 | 19 | 380 | 57 | 417 | 2.66e-34 | 137 |
| MS.gene013131.t1 | AT5G63620 | 28.455 | 369 | 249 | 8 | 19 | 380 | 57 | 417 | 3.27e-34 | 136 |
| MS.gene013131.t1 | AT5G63620 | 28.980 | 245 | 165 | 4 | 19 | 257 | 57 | 298 | 5.38e-25 | 107 |
| MS.gene013131.t1 | AT5G51970 | 24.713 | 348 | 218 | 12 | 44 | 381 | 43 | 356 | 6.07e-20 | 93.2 |
| MS.gene013131.t1 | AT5G51970 | 24.713 | 348 | 218 | 12 | 44 | 381 | 43 | 356 | 6.07e-20 | 93.2 |
| MS.gene013131.t1 | AT4G37970 | 22.997 | 387 | 208 | 14 | 44 | 405 | 40 | 361 | 9.18e-12 | 68.2 |
| MS.gene013131.t1 | AT4G37970 | 27.004 | 237 | 133 | 7 | 44 | 257 | 40 | 259 | 4.36e-11 | 65.5 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATACCTTTGCATCTTAT+TGG | 0.127700 | 3.1:-79477420 | None:intergenic |
| CCGCAATTCTGATGCTAATT+TGG | 0.142845 | 3.1:+79488933 | MS.gene013131:CDS |
| TGGTAATAATCACTCTCTTC+TGG | 0.211142 | 3.1:-79492970 | None:intergenic |
| AGCAACAATTGCACAAAGTT+TGG | 0.228530 | 3.1:+79478191 | MS.gene013131:CDS |
| TTGACAGGAAAACTAAATTT+AGG | 0.239752 | 3.1:-79490072 | None:intergenic |
| GCTTCGTGTCCTAAAATTCT+TGG | 0.241983 | 3.1:-79477835 | None:intergenic |
| ACAGAGGACCGTACAATTTC+AGG | 0.244895 | 3.1:-79492260 | None:intergenic |
| AATCAGGACAAATTTGAAAT+AGG | 0.247521 | 3.1:+79484693 | MS.gene013131:CDS |
| AGAAGTGGTGCACCATTTAT+TGG | 0.249121 | 3.1:+79478274 | MS.gene013131:CDS |
| ATTCGTACTTCCCATGATTT+AGG | 0.257153 | 3.1:-79477608 | None:intergenic |
| AGTCCTTATGACATTCTAAA+AGG | 0.258635 | 3.1:+79485442 | MS.gene013131:CDS |
| CATAGGCTTGGCATCCTTAA+TGG | 0.268660 | 3.1:+79485188 | MS.gene013131:CDS |
| GAGATGGAACAAGCAGGTTT+AGG | 0.280987 | 3.1:+79478240 | MS.gene013131:CDS |
| AGGAGGGGAAGATCAGATTT+TGG | 0.284829 | 3.1:-79485502 | None:intergenic |
| ACCATCACCGGATCACTATT+TGG | 0.287066 | 3.1:+79485469 | MS.gene013131:CDS |
| AGCTACTAACACCCAATAAA+TGG | 0.291135 | 3.1:-79478286 | None:intergenic |
| GCCTCAATGGCTCCGGAATA+AGG | 0.294083 | 3.1:-79495200 | None:intergenic |
| ATTAAAAGCCTCTGCCATTA+AGG | 0.295223 | 3.1:-79485202 | None:intergenic |
| TCATACACAGGAAAACAATT+TGG | 0.296006 | 3.1:+79484827 | MS.gene013131:intron |
| GCCACTCTGATGTCACCTTT+TGG | 0.303788 | 3.1:+79477654 | MS.gene013131:CDS |
| GCTTACAAATTTGTCGTTGC+AGG | 0.303899 | 3.1:-79484876 | None:intergenic |
| TTTCTGCAGAACTTTGGATA+TGG | 0.351141 | 3.1:+79493128 | MS.gene013131:intron |
| GACAGTGACCAATGCCTTAT+CGG | 0.354411 | 3.1:+79492559 | MS.gene013131:CDS |
| TCTATGCATTCACCACAGTT+TGG | 0.364954 | 3.1:-79478152 | None:intergenic |
| AGATGGAACAAGCAGGTTTA+GGG | 0.366295 | 3.1:+79478241 | MS.gene013131:CDS |
| GACCTTGTTCAGTTAGTGTT+TGG | 0.373400 | 3.1:-79489665 | None:intergenic |
| GCAACAATTGCACAAAGTTT+GGG | 0.381600 | 3.1:+79478192 | MS.gene013131:CDS |
| AGAGCCGTCGATTGGGAATC+CGG | 0.381628 | 3.1:+79495022 | MS.gene013131:CDS |
| TAGAGATGGCTCTTCTCAAT+TGG | 0.383510 | 3.1:+79492192 | MS.gene013131:CDS |
| AACCTGCTTGTTCCATCTCT+TGG | 0.385296 | 3.1:-79478236 | None:intergenic |
| CTATGCATTCACCACAGTTT+GGG | 0.391708 | 3.1:-79478151 | None:intergenic |
| GATATGGCCTCCGAAGATTT+AGG | 0.392610 | 3.1:+79493144 | MS.gene013131:CDS |
| GAAGTGGTGCACCATTTATT+GGG | 0.395014 | 3.1:+79478275 | MS.gene013131:CDS |
| CGAGGAGCTTCAAAGATTAT+AGG | 0.397391 | 3.1:+79484660 | MS.gene013131:CDS |
| GGTAATAATCACTCTCTTCT+GGG | 0.410820 | 3.1:-79492969 | None:intergenic |
| ACAATTTCAGGTGTTGTTAG+TGG | 0.411237 | 3.1:-79492248 | None:intergenic |
| AGACGGATCTGTCCTTATTC+CGG | 0.415683 | 3.1:+79495188 | MS.gene013131:CDS |
| TCCCCTCCTATAGGAGCATC+TGG | 0.416543 | 3.1:-79489885 | None:intergenic |
| TGGGCTTGGTGCTGTAGGCT+TGG | 0.418349 | 3.1:+79484457 | MS.gene013131:CDS |
| TCAAGATATTCCTCTTGATA+AGG | 0.419451 | 3.1:+79478355 | MS.gene013131:CDS |
| CGTACCGAGGCAGGTGCTGC+TGG | 0.422945 | 3.1:+79492676 | MS.gene013131:CDS |
| GGGAGGATTCTTCCACAATA+AGG | 0.425570 | 3.1:+79489904 | MS.gene013131:CDS |
| TGAGCATTTCTGCAGAACTT+TGG | 0.427246 | 3.1:+79493122 | MS.gene013131:intron |
| GGAGCCATTGAGGCCATTCA+TGG | 0.427597 | 3.1:+79495209 | MS.gene013131:CDS |
| CATTGTTTCCGTACCGAGGC+AGG | 0.428807 | 3.1:+79492667 | MS.gene013131:CDS |
| ACTCATCCAGATGCTCCTAT+AGG | 0.434401 | 3.1:+79489879 | MS.gene013131:CDS |
| ATCACAAGAGGTGGACTTCA+AGG | 0.435593 | 3.1:+79485801 | MS.gene013131:CDS |
| CCTCCCATGAATGGCCTCAA+TGG | 0.436697 | 3.1:-79495213 | None:intergenic |
| GATCAAGTTCCTTTCCAAGT+TGG | 0.436930 | 3.1:-79490104 | None:intergenic |
| ACAGAGTCGTGGAGAGTGTA+GGG | 0.439450 | 3.1:+79478078 | MS.gene013131:intron |
| CTCAGTTGCGGTGTTTCCAC+AGG | 0.447139 | 3.1:+79478386 | MS.gene013131:CDS |
| TTCCATCTCTTGGCATGTCA+AGG | 0.447447 | 3.1:-79478226 | None:intergenic |
| GACTATCAGAGCCGTCGATT+GGG | 0.448600 | 3.1:+79495015 | MS.gene013131:CDS |
| AACGGATACTCTTTCCTTGA+AGG | 0.450121 | 3.1:-79485849 | None:intergenic |
| GGACAGATCCGTCTTCTTGT+TGG | 0.450529 | 3.1:-79495179 | None:intergenic |
| GAAGAATCCTCCCCTCCTAT+AGG | 0.451861 | 3.1:-79489894 | None:intergenic |
| GATGTTGAGGCATGGATGCC+TGG | 0.456063 | 3.1:+79493189 | MS.gene013131:CDS |
| TATAGGCGTTGATCTAAATC+AGG | 0.457697 | 3.1:+79484677 | MS.gene013131:CDS |
| AGCAGGTGCGCCTAAATCTT+CGG | 0.458196 | 3.1:-79493154 | None:intergenic |
| TCTGTTACAGGAACTTAACT+TGG | 0.459373 | 3.1:+79485768 | MS.gene013131:intron |
| AAATTTGTCGTTGCAGGTGG+AGG | 0.459716 | 3.1:-79484870 | None:intergenic |
| GTGATTAAGGATATGACAAA+TGG | 0.463825 | 3.1:+79485141 | MS.gene013131:CDS |
| AATTAGACCCACCTAAATCA+TGG | 0.464922 | 3.1:+79477597 | MS.gene013131:CDS |
| GAATCTCTGCAGTGCCGATA+AGG | 0.466024 | 3.1:-79492573 | None:intergenic |
| TTTGTATCCATGCAGGGATA+GGG | 0.466794 | 3.1:+79484384 | MS.gene013131:intron |
| GCATCTGGATGAGTCATGTT+TGG | 0.471368 | 3.1:-79489870 | None:intergenic |
| GAAGGAGGGACTTACTGCTT+TGG | 0.472224 | 3.1:+79489794 | MS.gene013131:CDS |
| CAGGAAGTTGAGAGAGTTCG+TGG | 0.475368 | 3.1:+79489588 | MS.gene013131:intron |
| TGCAGTGGCTAATAAGATGA+AGG | 0.481696 | 3.1:+79489620 | MS.gene013131:CDS |
| GTCAAGGATCATCTCCAACT+TGG | 0.483492 | 3.1:+79490090 | MS.gene013131:CDS |
| AGACTATCAGAGCCGTCGAT+TGG | 0.484317 | 3.1:+79495014 | MS.gene013131:CDS |
| CGTACTTCCCATGATTTAGG+TGG | 0.486581 | 3.1:-79477605 | None:intergenic |
| TTACAGGAACTTAACTTGGA+TGG | 0.487365 | 3.1:+79485772 | MS.gene013131:intron |
| CTTGTAACGCTTCTGATGAT+CGG | 0.487709 | 3.1:-79477381 | None:intergenic |
| TTGCTTCGAATGCATAGGCT+TGG | 0.488095 | 3.1:+79485176 | MS.gene013131:CDS |
| TACAAATTTGTCGTTGCAGG+TGG | 0.492123 | 3.1:-79484873 | None:intergenic |
| GTACTTCTGTTGGACGATAC+CGG | 0.493596 | 3.1:-79495041 | None:intergenic |
| TCCAACAGAAGTACTTGTCC+CGG | 0.494173 | 3.1:+79495050 | MS.gene013131:CDS |
| GATAGGGGCAGCTTGGAAGG+TGG | 0.495016 | 3.1:+79484400 | MS.gene013131:CDS |
| GCACTGCAGAGATTCCTGTT+GGG | 0.495625 | 3.1:+79492581 | MS.gene013131:CDS |
| TCTATAGTAGCTTTCCATTG+AGG | 0.499766 | 3.1:-79488859 | None:intergenic |
| GAATGTGGAAGAAGTGAAAG+AGG | 0.499905 | 3.1:+79478103 | MS.gene013131:CDS |
| GCTTAATGATGAGCTTCAAC+GGG | 0.499991 | 3.1:+79489833 | MS.gene013131:CDS |
| ATATCAAGCCCTCCCATGAA+TGG | 0.501535 | 3.1:-79495222 | None:intergenic |
| GGGGAAAACGGTGATAATTG+GGG | 0.503172 | 3.1:+79485390 | MS.gene013131:CDS |
| TCATAAGGACTTAAAGTCAA+TGG | 0.503495 | 3.1:-79485430 | None:intergenic |
| CACTGCAGAGATTCCTGTTG+GGG | 0.506092 | 3.1:+79492582 | MS.gene013131:CDS |
| CGATCATCAGAAGCGTTACA+AGG | 0.506663 | 3.1:+79477382 | MS.gene013131:CDS |
| TTCAACTTCCTCTATGACAA+GGG | 0.512129 | 3.1:-79477576 | None:intergenic |
| GGAGAGTGTAGGGGAGAATG+TGG | 0.512251 | 3.1:+79478088 | MS.gene013131:CDS |
| ATGCAGGGATAGGGGCAGCT+TGG | 0.512802 | 3.1:+79484393 | MS.gene013131:intron |
| AGCTTAATGATGAGCTTCAA+CGG | 0.513437 | 3.1:+79489832 | MS.gene013131:CDS |
| AAGGTGGCGGATGTAGAAAA+AGG | 0.514460 | 3.1:+79484416 | MS.gene013131:CDS |
| GAATGCAGGGAAGAATTTGA+AGG | 0.514570 | 3.1:+79489776 | MS.gene013131:intron |
| AAATACCGTCTTCCTTATTG+TGG | 0.516317 | 3.1:-79489916 | None:intergenic |
| GGCACTGCAGAGATTCCTGT+TGG | 0.518136 | 3.1:+79492580 | MS.gene013131:CDS |
| TATAGACTTCAAGTGGATCA+AGG | 0.518299 | 3.1:+79488876 | MS.gene013131:CDS |
| ATGAATGGCCTCAATGGCTC+CGG | 0.520657 | 3.1:-79495207 | None:intergenic |
| TCCTTATTCCGGAGCCATTG+AGG | 0.522196 | 3.1:+79495199 | MS.gene013131:CDS |
| GTATACTTTGATTAGGGCTG+GGG | 0.522571 | 3.1:+79485370 | MS.gene013131:intron |
| AGGGGCAGCTTGGAAGGTGG+CGG | 0.522982 | 3.1:+79484403 | MS.gene013131:CDS |
| GTTAGTGTTTGGCGCTCAGA+TGG | 0.524079 | 3.1:-79489654 | None:intergenic |
| TAAATTGTTTATTCTTCAGA+AGG | 0.524440 | 3.1:+79488978 | MS.gene013131:CDS |
| TTATCGTAAATTTGATGTTG+AGG | 0.527976 | 3.1:+79493176 | MS.gene013131:CDS |
| AGTGCCAGCAGCACCTGCCT+CGG | 0.529025 | 3.1:-79492680 | None:intergenic |
| ATGCCTGGTTTAGAACGGTT+TGG | 0.531725 | 3.1:+79493204 | MS.gene013131:CDS |
| CCAAATTAGCATCAGAATTG+CGG | 0.533098 | 3.1:-79488933 | None:intergenic |
| ACATCAAATTTACGATAAGC+AGG | 0.533168 | 3.1:-79493171 | None:intergenic |
| CTTGGCATCCTTAATGGCAG+AGG | 0.533409 | 3.1:+79485194 | MS.gene013131:CDS |
| CCACAGTTTGGGAGGAACAC+TGG | 0.534671 | 3.1:-79478140 | None:intergenic |
| AATTTGTCGTTGCAGGTGGA+GGG | 0.536433 | 3.1:-79484869 | None:intergenic |
| TCCAAATAGTGATCCGGTGA+TGG | 0.537355 | 3.1:-79485470 | None:intergenic |
| CAGCAGCACCTGCCTCGGTA+CGG | 0.543838 | 3.1:-79492675 | None:intergenic |
| CAAGCCTCCAAATAGTGATC+CGG | 0.545658 | 3.1:-79485476 | None:intergenic |
| AGTAGACATATAATCATTCG+TGG | 0.546412 | 3.1:-79495147 | None:intergenic |
| TACTGCTTTGGAAGAAGACC+TGG | 0.548466 | 3.1:+79489806 | MS.gene013131:CDS |
| AGTTGGAGATGATCCTTGAC+AGG | 0.549831 | 3.1:-79490087 | None:intergenic |
| ATCCTTGACATGCCAAGAGA+TGG | 0.551996 | 3.1:+79478224 | MS.gene013131:CDS |
| GAAGACATGTTCTCATCCCT+AGG | 0.552439 | 3.1:+79493015 | MS.gene013131:CDS |
| CCCGGGACAAGTACTTCTGT+TGG | 0.553956 | 3.1:-79495051 | None:intergenic |
| ATGTAGGTGGAAAACCTCAA+TGG | 0.554153 | 3.1:+79488845 | MS.gene013131:intron |
| AGAAGTGAAAGAGGGCGACT+TGG | 0.555464 | 3.1:+79478112 | MS.gene013131:CDS |
| TAACAACACCTGAAATTGTA+CGG | 0.556606 | 3.1:+79492252 | MS.gene013131:CDS |
| AGGGATAGGGGCAGCTTGGA+AGG | 0.556933 | 3.1:+79484397 | MS.gene013131:intron |
| CATCCAGATGCTCCTATAGG+AGG | 0.557360 | 3.1:+79489882 | MS.gene013131:CDS |
| GAAAACGGTGATAATTGGGG+TGG | 0.557825 | 3.1:+79485393 | MS.gene013131:CDS |
| CTGCAGTGCCGATAAGGCAT+TGG | 0.560075 | 3.1:-79492567 | None:intergenic |
| TGCATTCACCACAGTTTGGG+AGG | 0.560405 | 3.1:-79478148 | None:intergenic |
| ATCCAGATGCTCCTATAGGA+GGG | 0.560485 | 3.1:+79489883 | MS.gene013131:CDS |
| CATGGATGCCTGGTTTAGAA+CGG | 0.561477 | 3.1:+79493199 | MS.gene013131:CDS |
| AGGTGAACCCCTTGTCATAG+AGG | 0.563425 | 3.1:+79477568 | MS.gene013131:CDS |
| GTACTTCCCATGATTTAGGT+GGG | 0.563464 | 3.1:-79477604 | None:intergenic |
| TTGTATCCATGCAGGGATAG+GGG | 0.565485 | 3.1:+79484385 | MS.gene013131:intron |
| CGCCAAACACTAACTGAACA+AGG | 0.566436 | 3.1:+79489663 | MS.gene013131:CDS |
| CTAAAAGGCAAAACCATCAC+CGG | 0.569450 | 3.1:+79485457 | MS.gene013131:CDS |
| AGCAAGCCAATAAGATGCAA+AGG | 0.570572 | 3.1:+79477414 | MS.gene013131:CDS |
| TCTCTTGGCATGTCAAGGAT+CGG | 0.570734 | 3.1:-79478221 | None:intergenic |
| TCACCAAACCGTTCTAAACC+AGG | 0.571662 | 3.1:-79493207 | None:intergenic |
| TACAATTAAGTACAGAGTCG+TGG | 0.574732 | 3.1:+79478067 | MS.gene013131:intron |
| ATCACCGGATCACTATTTGG+AGG | 0.575953 | 3.1:+79485472 | MS.gene013131:CDS |
| TGAAGCAGTTCTATTAGAGA+TGG | 0.577703 | 3.1:+79492178 | MS.gene013131:CDS |
| CTCACTTGAAATGTAACCCT+AGG | 0.578253 | 3.1:-79493032 | None:intergenic |
| CATTGAGGCCATTCATGGGA+GGG | 0.579345 | 3.1:+79495214 | MS.gene013131:CDS |
| TTCTCATTGTTTCCGTACCG+AGG | 0.579716 | 3.1:+79492663 | MS.gene013131:CDS |
| GCAGGGAAGAATTTGAAGGA+GGG | 0.582239 | 3.1:+79489780 | MS.gene013131:intron |
| AAGGCTTGCTTGCTCAGTTG+CGG | 0.582731 | 3.1:+79478374 | MS.gene013131:CDS |
| GGATCATCTCCAACTTGGAA+AGG | 0.583822 | 3.1:+79490095 | MS.gene013131:CDS |
| TACAGAGTCGTGGAGAGTGT+AGG | 0.586438 | 3.1:+79478077 | MS.gene013131:intron |
| TGGTTTAGAACGGTTTGGTG+AGG | 0.589958 | 3.1:+79493209 | MS.gene013131:CDS |
| AAGCTACTATAGACTTCAAG+TGG | 0.591029 | 3.1:+79488869 | MS.gene013131:CDS |
| GAGCCATTGAGGCCATTCAT+GGG | 0.591133 | 3.1:+79495210 | MS.gene013131:CDS |
| ATTCTTGGAAACCTAGCAGT+AGG | 0.592994 | 3.1:-79477820 | None:intergenic |
| TCCAGATGCTCCTATAGGAG+GGG | 0.593632 | 3.1:+79489884 | MS.gene013131:CDS |
| ATTAGACCCACCTAAATCAT+GGG | 0.594297 | 3.1:+79477598 | MS.gene013131:CDS |
| GTGCTGCTGGCACTGCAACA+AGG | 0.594968 | 3.1:+79492689 | MS.gene013131:CDS |
| GCAGTGGCTAATAAGATGAA+GGG | 0.596858 | 3.1:+79489621 | MS.gene013131:CDS |
| TAAGTACTTCTGAGCAAGGA+GGG | 0.597060 | 3.1:-79485518 | None:intergenic |
| AATGTGGAAGAAGTGAAAGA+GGG | 0.597105 | 3.1:+79478104 | MS.gene013131:CDS |
| GTAAATTTGATGTTGAGGCA+TGG | 0.597186 | 3.1:+79493181 | MS.gene013131:CDS |
| GAGAATTACCAACAAGAAGA+CGG | 0.597615 | 3.1:+79495171 | MS.gene013131:CDS |
| GATTATTGCTTCGAATGCAT+AGG | 0.597733 | 3.1:+79485171 | MS.gene013131:CDS |
| AGCAAGCAAGCCTTATCAAG+AGG | 0.598014 | 3.1:-79478365 | None:intergenic |
| CTCTCAGAAGTGATGAAGAG+AGG | 0.598060 | 3.1:+79492218 | MS.gene013131:CDS |
| ATTAAGGATATGACAAATGG+AGG | 0.599771 | 3.1:+79485144 | MS.gene013131:CDS |
| TGTCTAAGTACTTCTGAGCA+AGG | 0.606047 | 3.1:-79485522 | None:intergenic |
| TGCAGGGAAGAATTTGAAGG+AGG | 0.611002 | 3.1:+79489779 | MS.gene013131:intron |
| TGGCTTCATATCACAAGAGG+TGG | 0.612272 | 3.1:+79485792 | MS.gene013131:CDS |
| TTCTTCCACAATAAGGAAGA+CGG | 0.614769 | 3.1:+79489911 | MS.gene013131:CDS |
| TAGGGAAATGAAAGGAGAAG+TGG | 0.620155 | 3.1:+79478259 | MS.gene013131:CDS |
| TGCCAAGAGATGGAACAAGC+AGG | 0.620572 | 3.1:+79478234 | MS.gene013131:CDS |
| AGCAGGTTTAGGGAAATGAA+AGG | 0.621027 | 3.1:+79478251 | MS.gene013131:CDS |
| AGATGCTCCTATAGGAGGGG+AGG | 0.621334 | 3.1:+79489887 | MS.gene013131:CDS |
| ATTCAACTTCCTCTATGACA+AGG | 0.625158 | 3.1:-79477577 | None:intergenic |
| AAGACATGTTCTCATCCCTA+GGG | 0.626721 | 3.1:+79493016 | MS.gene013131:CDS |
| TCAACTTCCTCTATGACAAG+GGG | 0.628421 | 3.1:-79477575 | None:intergenic |
| CCAACAGAAGTACTTGTCCC+GGG | 0.629573 | 3.1:+79495051 | MS.gene013131:CDS |
| CCATTGAGGCCATTCATGGG+AGG | 0.629690 | 3.1:+79495213 | MS.gene013131:CDS |
| ATAATTGGGGTGGAAATGCA+CGG | 0.632504 | 3.1:+79485403 | MS.gene013131:CDS |
| TCACTTGAAATGTAACCCTA+GGG | 0.633087 | 3.1:-79493031 | None:intergenic |
| CACGCTGCTTCACAGGTCAG+TGG | 0.633207 | 3.1:+79492131 | MS.gene013131:intron |
| CAACGACAAATTTGTAAGCG+AGG | 0.635191 | 3.1:+79484880 | MS.gene013131:CDS |
| GCTCATCATTAAGCTTCACC+AGG | 0.637240 | 3.1:-79489824 | None:intergenic |
| TATACTTTGATTAGGGCTGG+GGG | 0.638684 | 3.1:+79485371 | MS.gene013131:intron |
| TAATGATGAGCTTCAACGGG+AGG | 0.643259 | 3.1:+79489836 | MS.gene013131:CDS |
| GGATGGCTTCATATCACAAG+AGG | 0.646176 | 3.1:+79485789 | MS.gene013131:CDS |
| GATCATCAGAAGCGTTACAA+GGG | 0.662460 | 3.1:+79477383 | MS.gene013131:CDS |
| AAGTACTTCTGAGCAAGGAG+GGG | 0.663616 | 3.1:-79485517 | None:intergenic |
| CTAAGTACTTCTGAGCAAGG+AGG | 0.669426 | 3.1:-79485519 | None:intergenic |
| ACTGCAGAGATTCCTGTTGG+GGG | 0.671727 | 3.1:+79492583 | MS.gene013131:CDS |
| CAGAGTCGTGGAGAGTGTAG+GGG | 0.676936 | 3.1:+79478079 | MS.gene013131:intron |
| TCGTGGAGAGAGAAATGCAG+TGG | 0.678883 | 3.1:+79489605 | MS.gene013131:CDS |
| AACGTGTGAACAAACTGTGG+CGG | 0.686971 | 3.1:-79495102 | None:intergenic |
| AGGTGCGCCTAAATCTTCGG+AGG | 0.706651 | 3.1:-79493151 | None:intergenic |
| TCCAAAAGGTGACATCAGAG+TGG | 0.707208 | 3.1:-79477655 | None:intergenic |
| CCAGTGTTCCTCCCAAACTG+TGG | 0.714540 | 3.1:+79478140 | MS.gene013131:CDS |
| GATACCGGATTCCCAATCGA+CGG | 0.717257 | 3.1:-79495026 | None:intergenic |
| AATAATCACTCTCTTCTGGG+CGG | 0.726189 | 3.1:-79492966 | None:intergenic |
| GCTGTTGCAGCAAAGCAACG+AGG | 0.749239 | 3.1:+79484642 | MS.gene013131:CDS |
| TTTAACGTGTGAACAAACTG+TGG | 0.755868 | 3.1:-79495105 | None:intergenic |
| AGTGGTGGATGTAACCCATG+TGG | 0.808348 | 3.1:+79478322 | MS.gene013131:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79477378 | 79495263 | 79477378 | ID=MS.gene013131 |
| chr3.1 | mRNA | 79477378 | 79495263 | 79477378 | ID=MS.gene013131.t1;Parent=MS.gene013131 |
| chr3.1 | exon | 79477378 | 79477435 | 79477378 | ID=MS.gene013131.t1.exon1;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79477378 | 79477435 | 79477378 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79477549 | 79477691 | 79477549 | ID=MS.gene013131.t1.exon2;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79477549 | 79477691 | 79477549 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79477817 | 79477863 | 79477817 | ID=MS.gene013131.t1.exon3;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79477817 | 79477863 | 79477817 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79478082 | 79478407 | 79478082 | ID=MS.gene013131.t1.exon4;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79478082 | 79478407 | 79478082 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79484399 | 79484481 | 79484399 | ID=MS.gene013131.t1.exon5;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79484399 | 79484481 | 79484399 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79484639 | 79484714 | 79484639 | ID=MS.gene013131.t1.exon6;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79484639 | 79484714 | 79484639 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79484837 | 79484901 | 79484837 | ID=MS.gene013131.t1.exon7;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79484837 | 79484901 | 79484837 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79485141 | 79485236 | 79485141 | ID=MS.gene013131.t1.exon8;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79485141 | 79485236 | 79485141 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79485385 | 79485546 | 79485385 | ID=MS.gene013131.t1.exon9;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79485385 | 79485546 | 79485385 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79485778 | 79485862 | 79485778 | ID=MS.gene013131.t1.exon10;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79485778 | 79485862 | 79485778 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79488851 | 79488999 | 79488851 | ID=MS.gene013131.t1.exon11;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79488851 | 79488999 | 79488851 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79489591 | 79489684 | 79489591 | ID=MS.gene013131.t1.exon12;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79489591 | 79489684 | 79489591 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79489784 | 79489932 | 79489784 | ID=MS.gene013131.t1.exon13;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79489784 | 79489932 | 79489784 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79490060 | 79490152 | 79490060 | ID=MS.gene013131.t1.exon14;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79490060 | 79490152 | 79490060 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79492146 | 79492325 | 79492146 | ID=MS.gene013131.t1.exon15;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79492146 | 79492325 | 79492146 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79492544 | 79492710 | 79492544 | ID=MS.gene013131.t1.exon16;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79492544 | 79492710 | 79492544 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79492915 | 79493049 | 79492915 | ID=MS.gene013131.t1.exon17;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79492915 | 79493049 | 79492915 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79493137 | 79493230 | 79493137 | ID=MS.gene013131.t1.exon18;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79493137 | 79493230 | 79493137 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| chr3.1 | exon | 79494991 | 79495263 | 79494991 | ID=MS.gene013131.t1.exon19;Parent=MS.gene013131.t1 |
| chr3.1 | CDS | 79494991 | 79495263 | 79494991 | ID=cds.MS.gene013131.t1;Parent=MS.gene013131.t1 |
| Gene Sequence |
| Protein sequence |