Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013264.t1 | XP_003602689.1 | 86.4 | 273 | 14 | 1 | 1 | 250 | 1 | 273 | 1.20E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013264.t1 | O64885 | 53.6 | 280 | 98 | 5 | 1 | 250 | 1 | 278 | 3.8e-68 | 259.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013264.t1 | G7J2M5 | 86.4 | 273 | 14 | 1 | 1 | 250 | 1 | 273 | 8.9e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023974 | MS.gene013264 | PPI |
| MS.gene013264 | MS.gene058668 | PPI |
| MS.gene23437 | MS.gene013264 | PPI |
| MS.gene013264 | MS.gene018651 | PPI |
| MS.gene85452 | MS.gene013264 | PPI |
| MS.gene013264 | MS.gene36640 | PPI |
| MS.gene013264 | MS.gene96949 | PPI |
| MS.gene035194 | MS.gene013264 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013264.t1 | MTR_3g096970 | 86.447 | 273 | 14 | 1 | 1 | 250 | 1 | 273 | 1.05e-171 | 477 |
| MS.gene013264.t1 | MTR_3g088850 | 82.609 | 276 | 22 | 1 | 1 | 250 | 1 | 276 | 1.63e-166 | 464 |
| MS.gene013264.t1 | MTR_3g088850 | 80.919 | 283 | 28 | 1 | 1 | 257 | 64 | 346 | 3.75e-166 | 464 |
| MS.gene013264.t1 | MTR_3g088850 | 80.919 | 283 | 28 | 1 | 1 | 257 | 38 | 320 | 8.85e-166 | 463 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013264.t1 | AT2G44510 | 54.152 | 277 | 95 | 5 | 1 | 247 | 1 | 275 | 8.37e-82 | 249 |
| MS.gene013264.t1 | AT5G03830 | 50.685 | 219 | 93 | 4 | 1 | 218 | 1 | 205 | 1.52e-53 | 175 |
| MS.gene013264.t1 | AT5G03830 | 50.685 | 219 | 93 | 4 | 1 | 218 | 1 | 205 | 1.52e-53 | 175 |
| MS.gene013264.t1 | AT5G03830 | 50.685 | 219 | 93 | 4 | 1 | 218 | 1 | 205 | 1.52e-53 | 175 |
Find 77 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTCTTGGCCTGCTTTA+AGG | 0.079662 | 3.4:-87712847 | None:intergenic |
| TTGTTACCGCTCTTAATTTA+TGG | 0.174434 | 3.4:+87712167 | MS.gene013264:CDS |
| TGGCTTTGCAGACTTGATTT+TGG | 0.241139 | 3.4:+87712081 | MS.gene013264:CDS |
| TTGGGTCGTTGACGCCTTCT+TGG | 0.252549 | 3.4:-87711587 | None:intergenic |
| TGATAAGTTGAGATTACTTT+TGG | 0.271135 | 3.4:+87712877 | MS.gene013264:CDS |
| GAATATAATGGGCCAAGATT+TGG | 0.291911 | 3.4:-87711606 | None:intergenic |
| CCATGGAAATCATTGGGTTT+AGG | 0.305918 | 3.4:-87712007 | None:intergenic |
| GCCAAATGGGGAGAATATAA+TGG | 0.310615 | 3.4:-87711618 | None:intergenic |
| CTCTTAATTTATGGAGGTAT+AGG | 0.323978 | 3.4:+87712176 | MS.gene013264:CDS |
| CGAGCAAGAGCGCGGCCAAA+TGG | 0.341638 | 3.4:-87711632 | None:intergenic |
| CCCATTATATTCTCCCCATT+TGG | 0.342026 | 3.4:+87711617 | MS.gene013264:CDS |
| AATATAATGGGCCAAGATTT+GGG | 0.346246 | 3.4:-87711605 | None:intergenic |
| TCAGATGACTCTGACCCTTC+AGG | 0.351563 | 3.4:-87711864 | None:intergenic |
| AGCACACCACGTAGGTCTTC+TGG | 0.360860 | 3.4:+87712907 | MS.gene013264:CDS |
| CTTAACTCCATGGAAATCAT+TGG | 0.376136 | 3.4:-87712014 | None:intergenic |
| TCTTAATTTATGGAGGTATA+GGG | 0.378376 | 3.4:+87712177 | MS.gene013264:CDS |
| GAATTATATAATGCTTAAAC+TGG | 0.392923 | 3.4:-87713161 | None:intergenic |
| GAGCAAGAGCGCGGCCAAAT+GGG | 0.392951 | 3.4:-87711631 | None:intergenic |
| CATAAAGATGTGGTAAAAGC+TGG | 0.429728 | 3.4:-87712958 | None:intergenic |
| GGCGTCAACGACCCAAATCT+TGG | 0.432825 | 3.4:+87711594 | MS.gene013264:CDS |
| TTAACTCCATGGAAATCATT+GGG | 0.437074 | 3.4:-87712013 | None:intergenic |
| TTACCTAGATGTTGAAGAAT+GGG | 0.437722 | 3.4:+87712051 | MS.gene013264:CDS |
| AATCCCATTCTTCAACATCT+AGG | 0.445601 | 3.4:-87712054 | None:intergenic |
| CTTACCTAGATGTTGAAGAA+TGG | 0.457923 | 3.4:+87712050 | MS.gene013264:CDS |
| TGACGCCTTCTTGGCTTTCG+AGG | 0.467184 | 3.4:-87711578 | None:intergenic |
| CCAAATGGGGAGAATATAAT+GGG | 0.469210 | 3.4:-87711617 | None:intergenic |
| TATCAGCAATGCCCTTCTCT+TGG | 0.475701 | 3.4:-87712859 | None:intergenic |
| CATCTAGGTAAGTTTGCAGC+AGG | 0.476506 | 3.4:-87712039 | None:intergenic |
| GCTTAAACTGGAAGGAAGTC+CGG | 0.491473 | 3.4:-87713149 | None:intergenic |
| AATTCTTAGCAAAATTTACA+AGG | 0.497613 | 3.4:+87713179 | MS.gene013264:CDS |
| TGGCTTCAACAAGCACACTT+TGG | 0.512805 | 3.4:+87711833 | MS.gene013264:CDS |
| TAACTTGCCTCATGAGGTGC+AGG | 0.517570 | 3.4:-87713556 | None:intergenic |
| ATAAAGATGTGGTAAAAGCT+GGG | 0.518331 | 3.4:-87712957 | None:intergenic |
| GTGGTAAAAGCTGGGGAGGA+AGG | 0.522221 | 3.4:-87712949 | None:intergenic |
| AACAGCCAACAGAGGACCTC+CGG | 0.530393 | 3.4:+87713130 | MS.gene013264:intron |
| GAATTTCTCCTCCTTAAAGC+AGG | 0.534707 | 3.4:+87712836 | MS.gene013264:CDS |
| CCTAAACCCAATGATTTCCA+TGG | 0.540138 | 3.4:+87712007 | MS.gene013264:CDS |
| AAGGGTCAGAGTCATCTGAC+AGG | 0.547238 | 3.4:+87711868 | MS.gene013264:CDS |
| TCTCTTGGCCTGCTTTAAGG+AGG | 0.553910 | 3.4:-87712844 | None:intergenic |
| GCAGCAACCTGCACCTCATG+AGG | 0.560436 | 3.4:+87713549 | MS.gene013264:CDS |
| CACTGTAGGGACTGTTGTGA+AGG | 0.561683 | 3.4:+87712111 | MS.gene013264:CDS |
| GTAGAGGATGATGAGGACGA+AGG | 0.562570 | 3.4:+87712133 | MS.gene013264:CDS |
| TATATAATGCTTAAACTGGA+AGG | 0.563473 | 3.4:-87713157 | None:intergenic |
| AGATGTGGTAAAAGCTGGGG+AGG | 0.569543 | 3.4:-87712953 | None:intergenic |
| GCAGGTTGCTGCGTGCGCAA+AGG | 0.570607 | 3.4:-87713538 | None:intergenic |
| AAATGCCTCGAAAGCCAAGA+AGG | 0.571167 | 3.4:+87711573 | None:intergenic |
| CCTTAAAGCAGGCCAAGAGA+AGG | 0.574068 | 3.4:+87712847 | MS.gene013264:CDS |
| GCAGCAGGGTCTTAACTCCA+TGG | 0.576405 | 3.4:-87712024 | None:intergenic |
| AGCAAGAGCGCGGCCAAATG+GGG | 0.577789 | 3.4:-87711630 | None:intergenic |
| CTTAAAGCAGGCCAAGAGAA+GGG | 0.581387 | 3.4:+87712848 | MS.gene013264:CDS |
| TTACCGCTCTTAATTTATGG+AGG | 0.583198 | 3.4:+87712170 | MS.gene013264:CDS |
| GAAGTCCGGAGGTCCTCTGT+TGG | 0.590024 | 3.4:-87713135 | None:intergenic |
| GTCATGGGCCACAGAAGATG+AGG | 0.600540 | 3.4:+87713000 | MS.gene013264:CDS |
| AAAGAGTAACTTGCCTCATG+AGG | 0.606852 | 3.4:-87713562 | None:intergenic |
| ACTGAGCGATGATAGTGAAG+AGG | 0.609208 | 3.4:+87713374 | MS.gene013264:CDS |
| AAAAGAGAATCATAAAGATG+TGG | 0.615325 | 3.4:-87712968 | None:intergenic |
| ACATCTCACCTCATCTTCTG+TGG | 0.620207 | 3.4:-87713008 | None:intergenic |
| ATAATTTCCAGTTAAGCTCG+TGG | 0.625854 | 3.4:+87713503 | MS.gene013264:intron |
| ACTTTGGAAGAAAGACCTGA+AGG | 0.627107 | 3.4:+87711849 | MS.gene013264:CDS |
| AAGGTGTATTATGAAACTCA+AGG | 0.638398 | 3.4:+87712814 | MS.gene013264:CDS |
| TCTTCTGGTATCACAGCGTG+TGG | 0.641776 | 3.4:+87712922 | MS.gene013264:CDS |
| CGTGCGCAAAGGAAAACAGA+AGG | 0.644088 | 3.4:-87713527 | None:intergenic |
| ATGCCATACGAGCAAGAGCG+CGG | 0.646129 | 3.4:-87711640 | None:intergenic |
| TAAAGATGTGGTAAAAGCTG+GGG | 0.646135 | 3.4:-87712956 | None:intergenic |
| AGGGACTGTTGTGAAGGTAG+AGG | 0.647189 | 3.4:+87712117 | MS.gene013264:CDS |
| CTTTGGAAGAAAGACCTGAA+GGG | 0.652042 | 3.4:+87711850 | MS.gene013264:CDS |
| ATCTAGGTAAGTTTGCAGCA+GGG | 0.655089 | 3.4:-87712038 | None:intergenic |
| GTTGAAGAATGGGATTTGAG+TGG | 0.660162 | 3.4:+87712061 | MS.gene013264:CDS |
| AGGGTCAGAGTCATCTGACA+GGG | 0.671510 | 3.4:+87711869 | MS.gene013264:CDS |
| AATAGTATATGTTAAGCCCG+AGG | 0.680431 | 3.4:+87713398 | MS.gene013264:CDS |
| GCACACTTAACAGCCAACAG+AGG | 0.683392 | 3.4:+87713122 | MS.gene013264:intron |
| ATACCTCCATAAATTAAGAG+CGG | 0.696195 | 3.4:-87712173 | None:intergenic |
| TGTGAAGGTAGAGGATGATG+AGG | 0.709733 | 3.4:+87712126 | MS.gene013264:CDS |
| CTTCACAACAGTCCCTACAG+TGG | 0.715752 | 3.4:-87712110 | None:intergenic |
| TAAACTGGAAGGAAGTCCGG+AGG | 0.716607 | 3.4:-87713146 | None:intergenic |
| GGGGAACAAGCACACCACGT+AGG | 0.744491 | 3.4:+87712899 | MS.gene013264:CDS |
| GTGATACCAGAAGACCTACG+TGG | 0.802514 | 3.4:-87712913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTATAAAAGAGAAAA+AGG | - | chr3.4:87711727-87711746 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTGTAAGTT+TGG | + | chr3.4:87712716-87712735 | MS.gene013264:intron | 10.0% |
| !! | TAAGTTATCTACAATTTATA+AGG | + | chr3.4:87712693-87712712 | MS.gene013264:intron | 15.0% |
| !! | TCTCAAATAAAATATGTATT+TGG | - | chr3.4:87712744-87712763 | None:intergenic | 15.0% |
| !! | TTCATATTCAAGAAAAAAAA+AGG | + | chr3.4:87712431-87712450 | MS.gene013264:intron | 15.0% |
| !!! | ATTGTTATTTTTAGCTTTTA+TGG | + | chr3.4:87713248-87713267 | MS.gene013264:intron | 15.0% |
| !!! | ATTTTTTTCTTTAATGTCTT+TGG | + | chr3.4:87712510-87712529 | MS.gene013264:intron | 15.0% |
| !! | AAGGAATTTGTATATTTGTA+TGG | + | chr3.4:87712450-87712469 | MS.gene013264:intron | 20.0% |
| !! | AAGTAAAATTGATTGATACA+AGG | + | chr3.4:87711936-87711955 | MS.gene013264:intron | 20.0% |
| !! | AATTCTTAGCAAAATTTACA+AGG | + | chr3.4:87713179-87713198 | MS.gene013264:CDS | 20.0% |
| !! | AGGAATTTGTATATTTGTAT+GGG | + | chr3.4:87712451-87712470 | MS.gene013264:intron | 20.0% |
| !! | ATAAGAGAACAACAATAAAT+AGG | - | chr3.4:87713230-87713249 | None:intergenic | 20.0% |
| !! | ATGTTACAAAACAACAAAAA+TGG | - | chr3.4:87713295-87713314 | None:intergenic | 20.0% |
| !! | GAATTATATAATGCTTAAAC+TGG | - | chr3.4:87713164-87713183 | None:intergenic | 20.0% |
| !! | GACAAAATAATTCAAAATGA+TGG | - | chr3.4:87713459-87713478 | None:intergenic | 20.0% |
| !! | TATTACATTAGAAAAGAAAG+AGG | - | chr3.4:87712249-87712268 | None:intergenic | 20.0% |
| !! | TGTAAGACATAAAACATAAA+AGG | - | chr3.4:87711777-87711796 | None:intergenic | 20.0% |
| !!! | TACACATATGATTACTATTT+TGG | - | chr3.4:87712409-87712428 | None:intergenic | 20.0% |
| ! | AAAAGAGAATCATAAAGATG+TGG | - | chr3.4:87712971-87712990 | None:intergenic | 25.0% |
| ! | GAATAAGAATGAATTGATCA+AGG | - | chr3.4:87712482-87712501 | None:intergenic | 25.0% |
| ! | TATATAATGCTTAAACTGGA+AGG | - | chr3.4:87713160-87713179 | None:intergenic | 25.0% |
| !! | AAAGCTTCTAAAAAAGTTGA+CGG | - | chr3.4:87712662-87712681 | None:intergenic | 25.0% |
| !! | AGCTTAACTGGAAATTATTT+TGG | - | chr3.4:87713501-87713520 | None:intergenic | 25.0% |
| !! | CAAAATTTTCAAATTGTTGC+AGG | - | chr3.4:87712551-87712570 | None:intergenic | 25.0% |
| !! | GTAACATTTTACTTCATTTC+TGG | + | chr3.4:87713308-87713327 | MS.gene013264:intron | 25.0% |
| !! | TCTTAATTTATGGAGGTATA+GGG | + | chr3.4:87712177-87712196 | MS.gene013264:CDS | 25.0% |
| !!! | ACATATGATTACTATTTTGG+TGG | - | chr3.4:87712406-87712425 | None:intergenic | 25.0% |
| !!! | ATAAGTTGAGATTACTTTTG+GGG | + | chr3.4:87712879-87712898 | MS.gene013264:CDS | 25.0% |
| !!! | ATATGATTACTATTTTGGTG+GGG | - | chr3.4:87712404-87712423 | None:intergenic | 25.0% |
| !!! | CATATGATTACTATTTTGGT+GGG | - | chr3.4:87712405-87712424 | None:intergenic | 25.0% |
| !!! | GATAAGTTGAGATTACTTTT+GGG | + | chr3.4:87712878-87712897 | MS.gene013264:CDS | 25.0% |
| !!! | TCTTTTTAATGAAGTGTCAT+GGG | + | chr3.4:87712985-87713004 | MS.gene013264:CDS | 25.0% |
| !!! | TGATAAGTTGAGATTACTTT+TGG | + | chr3.4:87712877-87712896 | MS.gene013264:CDS | 25.0% |
| !!! | TTGAAAATTTTGTTTGTGAC+TGG | + | chr3.4:87712559-87712578 | MS.gene013264:intron | 25.0% |
| AAGGTGTATTATGAAACTCA+AGG | + | chr3.4:87712814-87712833 | MS.gene013264:CDS | 30.0% | |
| AGAAAGTAAGTGTGATCTTA+AGG | - | chr3.4:87712298-87712317 | None:intergenic | 30.0% | |
| ATAAAGATGTGGTAAAAGCT+GGG | - | chr3.4:87712960-87712979 | None:intergenic | 30.0% | |
| ATACCTCCATAAATTAAGAG+CGG | - | chr3.4:87712176-87712195 | None:intergenic | 30.0% | |
| GAGAACAACAATAAATAGGA+AGG | - | chr3.4:87713226-87713245 | None:intergenic | 30.0% | |
| GGTAGATGTTAATTCAACTT+AGG | - | chr3.4:87712640-87712659 | None:intergenic | 30.0% | |
| TCACACTTACTTTCTTCTTT+AGG | + | chr3.4:87712303-87712322 | MS.gene013264:intron | 30.0% | |
| TTAACTCCATGGAAATCATT+GGG | - | chr3.4:87712016-87712035 | None:intergenic | 30.0% | |
| TTACCTAGATGTTGAAGAAT+GGG | + | chr3.4:87712051-87712070 | MS.gene013264:CDS | 30.0% | |
| TTGTGAAAAAAGTTCATCCT+CGG | - | chr3.4:87713418-87713437 | None:intergenic | 30.0% | |
| TTGTTACCGCTCTTAATTTA+TGG | + | chr3.4:87712167-87712186 | MS.gene013264:CDS | 30.0% | |
| ! | AAGCTTCTAAAAAAGTTGAC+GGG | - | chr3.4:87712661-87712680 | None:intergenic | 30.0% |
| ! | ATTGGGTTTAGGATCAAAAA+AGG | - | chr3.4:87711999-87712018 | None:intergenic | 30.0% |
| ! | CTCTTAATTTATGGAGGTAT+AGG | + | chr3.4:87712176-87712195 | MS.gene013264:CDS | 30.0% |
| ! | TAAAATTTTGCTAGGAGCAA+AGG | + | chr3.4:87712795-87712814 | MS.gene013264:intron | 30.0% |
| ! | TGCTCCTAGCAAAATTTTAA+AGG | - | chr3.4:87712794-87712813 | None:intergenic | 30.0% |
| !! | AATATAATGGGCCAAGATTT+GGG | - | chr3.4:87711608-87711627 | None:intergenic | 30.0% |
| !! | AGATGTTGATAGTATCAGAT+GGG | + | chr3.4:87713025-87713044 | MS.gene013264:intron | 30.0% |
| !! | ATAAAAGGCACTTAAAAGCA+TGG | - | chr3.4:87711762-87711781 | None:intergenic | 30.0% |
| !! | CTCAAATTAGATTAGCTTCA+AGG | - | chr3.4:87712771-87712790 | None:intergenic | 30.0% |
| !! | CTCTTTTTAATGAAGTGTCA+TGG | + | chr3.4:87712984-87713003 | MS.gene013264:CDS | 30.0% |
| !! | TAAGTTGAGATTACTTTTGG+GGG | + | chr3.4:87712880-87712899 | MS.gene013264:CDS | 30.0% |
| !!! | TGAGCCTTTAAAATTTTGCT+AGG | + | chr3.4:87712787-87712806 | MS.gene013264:intron | 30.0% |
| AATAGTATATGTTAAGCCCG+AGG | + | chr3.4:87713398-87713417 | MS.gene013264:CDS | 35.0% | |
| AATCCCATTCTTCAACATCT+AGG | - | chr3.4:87712057-87712076 | None:intergenic | 35.0% | |
| ATAATTTCCAGTTAAGCTCG+TGG | + | chr3.4:87713503-87713522 | MS.gene013264:intron | 35.0% | |
| CAAAAAAGGCAAAATCAGCT+TGG | - | chr3.4:87711985-87712004 | None:intergenic | 35.0% | |
| CATAAAGATGTGGTAAAAGC+TGG | - | chr3.4:87712961-87712980 | None:intergenic | 35.0% | |
| CCAAATGGGGAGAATATAAT+GGG | - | chr3.4:87711620-87711639 | None:intergenic | 35.0% | |
| CTTAACTCCATGGAAATCAT+TGG | - | chr3.4:87712017-87712036 | None:intergenic | 35.0% | |
| CTTACCTAGATGTTGAAGAA+TGG | + | chr3.4:87712050-87712069 | MS.gene013264:CDS | 35.0% | |
| GATGTTAATTCAACTTAGGC+AGG | - | chr3.4:87712636-87712655 | None:intergenic | 35.0% | |
| TAAAGATGTGGTAAAAGCTG+GGG | - | chr3.4:87712959-87712978 | None:intergenic | 35.0% | |
| TCACTAGTAAACTTGCACAA+GGG | - | chr3.4:87712360-87712379 | None:intergenic | 35.0% | |
| TGTGAAAAAAGTTCATCCTC+GGG | - | chr3.4:87713417-87713436 | None:intergenic | 35.0% | |
| TTACCGCTCTTAATTTATGG+AGG | + | chr3.4:87712170-87712189 | MS.gene013264:CDS | 35.0% | |
| ! | ATGTTTTTCTGTTTGACTGC+TGG | + | chr3.4:87713061-87713080 | MS.gene013264:intron | 35.0% |
| ! | GTCTTTGGTTCATTGAATAG+TGG | + | chr3.4:87712525-87712544 | MS.gene013264:intron | 35.0% |
| !! | GAATATAATGGGCCAAGATT+TGG | - | chr3.4:87711609-87711628 | None:intergenic | 35.0% |
| !! | GAGATGTTGATAGTATCAGA+TGG | + | chr3.4:87713024-87713043 | MS.gene013264:intron | 35.0% |
| !!! | GAGGATGAACTTTTTTCACA+AGG | + | chr3.4:87713417-87713436 | MS.gene013264:CDS | 35.0% |
| AAGAAAGAGGCAAACAGATG+AGG | - | chr3.4:87712236-87712255 | None:intergenic | 40.0% | |
| ACTAGTAAACTTGCACAAGG+GGG | - | chr3.4:87712358-87712377 | None:intergenic | 40.0% | |
| ATCTAGGTAAGTTTGCAGCA+GGG | - | chr3.4:87712041-87712060 | None:intergenic | 40.0% | |
| ATGGATTCGTAATGACGGTT+TGG | - | chr3.4:87711670-87711689 | None:intergenic | 40.0% | |
| CACTAGTAAACTTGCACAAG+GGG | - | chr3.4:87712359-87712378 | None:intergenic | 40.0% | |
| CCATGGAAATCATTGGGTTT+AGG | - | chr3.4:87712010-87712029 | None:intergenic | 40.0% | |
| CCCATTATATTCTCCCCATT+TGG | + | chr3.4:87711617-87711636 | MS.gene013264:CDS | 40.0% | |
| CCTAAACCCAATGATTTCCA+TGG | + | chr3.4:87712007-87712026 | MS.gene013264:CDS | 40.0% | |
| CGTCTTACTAGTAGAGGAAA+GGG | - | chr3.4:87711704-87711723 | None:intergenic | 40.0% | |
| CTCACTAGTAAACTTGCACA+AGG | - | chr3.4:87712361-87712380 | None:intergenic | 40.0% | |
| GAATTTCTCCTCCTTAAAGC+AGG | + | chr3.4:87712836-87712855 | MS.gene013264:CDS | 40.0% | |
| GCCAAATGGGGAGAATATAA+TGG | - | chr3.4:87711621-87711640 | None:intergenic | 40.0% | |
| GTTGAAGAATGGGATTTGAG+TGG | + | chr3.4:87712061-87712080 | MS.gene013264:CDS | 40.0% | |
| TACTAGTAGAGGAAAGGGTA+GGG | - | chr3.4:87711699-87711718 | None:intergenic | 40.0% | |
| TGATAGTATCAGATGGGTGA+GGG | + | chr3.4:87713031-87713050 | MS.gene013264:intron | 40.0% | |
| TTACTAGTAGAGGAAAGGGT+AGG | - | chr3.4:87711700-87711719 | None:intergenic | 40.0% | |
| ! | ACTTTGGAAGAAAGACCTGA+AGG | + | chr3.4:87711849-87711868 | MS.gene013264:CDS | 40.0% |
| ! | CTTTGGAAGAAAGACCTGAA+GGG | + | chr3.4:87711850-87711869 | MS.gene013264:CDS | 40.0% |
| ! | TCGCAATGGATTCGTAATGA+CGG | - | chr3.4:87711675-87711694 | None:intergenic | 40.0% |
| ! | TTGATAGTATCAGATGGGTG+AGG | + | chr3.4:87713030-87713049 | MS.gene013264:intron | 40.0% |
| !! | AAAAGGCGTCTTACTAGTAG+AGG | - | chr3.4:87711710-87711729 | None:intergenic | 40.0% |
| !! | ACAAGGTCTCTGTTGTTTCA+GGG | + | chr3.4:87711953-87711972 | MS.gene013264:intron | 40.0% |
| !! | TACAAGGTCTCTGTTGTTTC+AGG | + | chr3.4:87711952-87711971 | MS.gene013264:intron | 40.0% |
| !! | TGGCTTTGCAGACTTGATTT+TGG | + | chr3.4:87712081-87712100 | MS.gene013264:CDS | 40.0% |
| !!! | ATTTTGGAACAGACCACTGT+AGG | + | chr3.4:87712097-87712116 | MS.gene013264:CDS | 40.0% |
| !!! | TTTTGGAACAGACCACTGTA+GGG | + | chr3.4:87712098-87712117 | MS.gene013264:CDS | 40.0% |
| AAACTTGCACAAGGGGGAAA+TGG | - | chr3.4:87712352-87712371 | None:intergenic | 45.0% | |
| ACATCTCACCTCATCTTCTG+TGG | - | chr3.4:87713011-87713030 | None:intergenic | 45.0% | |
| CATCTAGGTAAGTTTGCAGC+AGG | - | chr3.4:87712042-87712061 | None:intergenic | 45.0% | |
| CATTACCTAGGAAGTGGATC+AGG | - | chr3.4:87711815-87711834 | None:intergenic | 45.0% | |
| CTATTCCTGATCCACTTCCT+AGG | + | chr3.4:87711807-87711826 | MS.gene013264:intron | 45.0% | |
| CTGATCCACTTCCTAGGTAA+TGG | + | chr3.4:87711813-87711832 | MS.gene013264:intron | 45.0% | |
| CTTAAAGCAGGCCAAGAGAA+GGG | + | chr3.4:87712848-87712867 | MS.gene013264:CDS | 45.0% | |
| GCGTCTTACTAGTAGAGGAA+AGG | - | chr3.4:87711705-87711724 | None:intergenic | 45.0% | |
| GCTTAAACTGGAAGGAAGTC+CGG | - | chr3.4:87713152-87713171 | None:intergenic | 45.0% | |
| TATCAGCAATGCCCTTCTCT+TGG | - | chr3.4:87712862-87712881 | None:intergenic | 45.0% | |
| TGAAGCCATTACCTAGGAAG+TGG | - | chr3.4:87711821-87711840 | None:intergenic | 45.0% | |
| TGGCTTCAACAAGCACACTT+TGG | + | chr3.4:87711833-87711852 | MS.gene013264:CDS | 45.0% | |
| TGTGAAGGTAGAGGATGATG+AGG | + | chr3.4:87712126-87712145 | MS.gene013264:CDS | 45.0% | |
| ! | ACTGAGCGATGATAGTGAAG+AGG | + | chr3.4:87713374-87713393 | MS.gene013264:CDS | 45.0% |
| ! | ATTCGTAATGACGGTTTGGC+TGG | - | chr3.4:87711666-87711685 | None:intergenic | 45.0% |
| ! | GCTTGTTGAAGCCATTACCT+AGG | - | chr3.4:87711827-87711846 | None:intergenic | 45.0% |
| AAGGGTCAGAGTCATCTGAC+AGG | + | chr3.4:87711868-87711887 | MS.gene013264:CDS | 50.0% | |
| AGAAGGACCACGAGCTTAAC+TGG | - | chr3.4:87713513-87713532 | None:intergenic | 50.0% | |
| AGATGTGGTAAAAGCTGGGG+AGG | - | chr3.4:87712956-87712975 | None:intergenic | 50.0% | |
| AGGGACTGTTGTGAAGGTAG+AGG | + | chr3.4:87712117-87712136 | MS.gene013264:CDS | 50.0% | |
| AGGGTCAGAGTCATCTGACA+GGG | + | chr3.4:87711869-87711888 | MS.gene013264:CDS | 50.0% | |
| CACTGTAGGGACTGTTGTGA+AGG | + | chr3.4:87712111-87712130 | MS.gene013264:CDS | 50.0% | |
| CCTTAAAGCAGGCCAAGAGA+AGG | + | chr3.4:87712847-87712866 | MS.gene013264:CDS | 50.0% | |
| CCTTCTCTTGGCCTGCTTTA+AGG | - | chr3.4:87712850-87712869 | None:intergenic | 50.0% | |
| CGTGCGCAAAGGAAAACAGA+AGG | - | chr3.4:87713530-87713549 | None:intergenic | 50.0% | |
| CTTCACAACAGTCCCTACAG+TGG | - | chr3.4:87712113-87712132 | None:intergenic | 50.0% | |
| GCACACTTAACAGCCAACAG+AGG | + | chr3.4:87713122-87713141 | MS.gene013264:intron | 50.0% | |
| GTAGAGGATGATGAGGACGA+AGG | + | chr3.4:87712133-87712152 | MS.gene013264:CDS | 50.0% | |
| GTGATACCAGAAGACCTACG+TGG | - | chr3.4:87712916-87712935 | None:intergenic | 50.0% | |
| TAAACTGGAAGGAAGTCCGG+AGG | - | chr3.4:87713149-87713168 | None:intergenic | 50.0% | |
| TCAGATGACTCTGACCCTTC+AGG | - | chr3.4:87711867-87711886 | None:intergenic | 50.0% | |
| TCTTCTGGTATCACAGCGTG+TGG | + | chr3.4:87712922-87712941 | MS.gene013264:CDS | 50.0% | |
| !! | TCTCTTGGCCTGCTTTAAGG+AGG | - | chr3.4:87712847-87712866 | None:intergenic | 50.0% |
| AACAGCCAACAGAGGACCTC+CGG | + | chr3.4:87713130-87713149 | MS.gene013264:intron | 55.0% | |
| AGCACACCACGTAGGTCTTC+TGG | + | chr3.4:87712907-87712926 | MS.gene013264:CDS | 55.0% | |
| ATGCCATACGAGCAAGAGCG+CGG | - | chr3.4:87711643-87711662 | None:intergenic | 55.0% | |
| GCAGCAGGGTCTTAACTCCA+TGG | - | chr3.4:87712027-87712046 | None:intergenic | 55.0% | |
| GGAAAGGGTAGGGTTCGCAA+TGG | - | chr3.4:87711689-87711708 | None:intergenic | 55.0% | |
| GGCGTCAACGACCCAAATCT+TGG | + | chr3.4:87711594-87711613 | MS.gene013264:CDS | 55.0% | |
| GTCATGGGCCACAGAAGATG+AGG | + | chr3.4:87713000-87713019 | MS.gene013264:CDS | 55.0% | |
| GTGGTAAAAGCTGGGGAGGA+AGG | - | chr3.4:87712952-87712971 | None:intergenic | 55.0% | |
| TTGGGTCGTTGACGCCTTCT+TGG | - | chr3.4:87711590-87711609 | None:intergenic | 55.0% | |
| ! | TGACGCCTTCTTGGCTTTCG+AGG | - | chr3.4:87711581-87711600 | None:intergenic | 55.0% |
| GAAGTCCGGAGGTCCTCTGT+TGG | - | chr3.4:87713138-87713157 | None:intergenic | 60.0% | |
| GGGGAACAAGCACACCACGT+AGG | + | chr3.4:87712899-87712918 | MS.gene013264:CDS | 60.0% | |
| ! | AGCAAGAGCGCGGCCAAATG+GGG | - | chr3.4:87711633-87711652 | None:intergenic | 60.0% |
| ! | GAGCAAGAGCGCGGCCAAAT+GGG | - | chr3.4:87711634-87711653 | None:intergenic | 60.0% |
| GCAGGTTGCTGCGTGCGCAA+AGG | - | chr3.4:87713541-87713560 | None:intergenic | 65.0% | |
| TGGCCGCGCTCTTGCTCGTA+TGG | + | chr3.4:87711637-87711656 | MS.gene013264:intron | 65.0% | |
| ! | CGAGCAAGAGCGCGGCCAAA+TGG | - | chr3.4:87711635-87711654 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87711575 | 87713569 | 87711575 | ID=MS.gene013264 |
| chr3.4 | mRNA | 87711575 | 87713569 | 87711575 | ID=MS.gene013264.t1;Parent=MS.gene013264 |
| chr3.4 | exon | 87711575 | 87711653 | 87711575 | ID=MS.gene013264.t1.exon1;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87711575 | 87711653 | 87711575 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| chr3.4 | exon | 87711829 | 87711899 | 87711829 | ID=MS.gene013264.t1.exon2;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87711829 | 87711899 | 87711829 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| chr3.4 | exon | 87711974 | 87712198 | 87711974 | ID=MS.gene013264.t1.exon3;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87711974 | 87712198 | 87711974 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| chr3.4 | exon | 87712809 | 87713021 | 87712809 | ID=MS.gene013264.t1.exon4;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87712809 | 87713021 | 87712809 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| chr3.4 | exon | 87713135 | 87713200 | 87713135 | ID=MS.gene013264.t1.exon5;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87713135 | 87713200 | 87713135 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| chr3.4 | exon | 87713345 | 87713438 | 87713345 | ID=MS.gene013264.t1.exon6;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87713345 | 87713438 | 87713345 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| chr3.4 | exon | 87713514 | 87713569 | 87713514 | ID=MS.gene013264.t1.exon7;Parent=MS.gene013264.t1 |
| chr3.4 | CDS | 87713514 | 87713569 | 87713514 | ID=cds.MS.gene013264.t1;Parent=MS.gene013264.t1 |
| Gene Sequence |
| Protein sequence |
