Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018651.t1 | XP_004296407.1 | 100 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 5.40E-73 | 283.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018651.t1 | P49690 | 98.6 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 6.4e-75 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018651.t1 | M5WP13 | 100.0 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 3.9e-73 | 283.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018651.t1 | MTR_7g098290 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.93e-98 | 278 |
| MS.gene018651.t1 | MTR_1g069585 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.93e-98 | 278 |
| MS.gene018651.t1 | MTR_7g098290 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 8.58e-87 | 249 |
| MS.gene018651.t1 | MTR_1g026090 | 81.481 | 135 | 10 | 1 | 2 | 136 | 42 | 161 | 3.07e-71 | 212 |
| MS.gene018651.t1 | MTR_5g054560 | 68.800 | 125 | 15 | 1 | 16 | 140 | 1 | 101 | 1.78e-53 | 164 |
| MS.gene018651.t1 | MTR_5g464620 | 89.796 | 49 | 5 | 0 | 14 | 62 | 16 | 64 | 3.73e-25 | 91.7 |
| MS.gene018651.t1 | MTR_2g070580 | 92.683 | 41 | 3 | 0 | 100 | 140 | 87 | 127 | 2.62e-21 | 83.2 |
| MS.gene018651.t1 | MTR_1779s0020 | 36.522 | 115 | 65 | 3 | 26 | 136 | 8 | 118 | 3.65e-16 | 70.1 |
| MS.gene018651.t1 | MTR_4g051390 | 36.522 | 115 | 65 | 3 | 26 | 136 | 8 | 118 | 4.98e-16 | 69.7 |
| MS.gene018651.t1 | MTR_2g087550 | 36.792 | 106 | 60 | 2 | 26 | 128 | 8 | 109 | 1.55e-14 | 67.8 |
| MS.gene018651.t1 | MTR_0002s0780 | 34.426 | 122 | 73 | 3 | 23 | 140 | 132 | 250 | 1.92e-14 | 68.2 |
| MS.gene018651.t1 | MTR_4g017930 | 80.556 | 36 | 5 | 1 | 104 | 139 | 13 | 46 | 1.09e-11 | 58.5 |
| MS.gene018651.t1 | MTR_4g066540 | 72.500 | 40 | 7 | 1 | 100 | 139 | 54 | 89 | 7.28e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018651.t1 | AT3G04400 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
| MS.gene018651.t1 | AT2G33370 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
| MS.gene018651.t1 | AT1G04480 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
| MS.gene018651.t1 | AT3G04400 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.64e-88 | 252 |
| MS.gene018651.t1 | AT2G33370 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.64e-88 | 252 |
| MS.gene018651.t1 | ATCG00780 | 34.783 | 115 | 67 | 3 | 26 | 136 | 8 | 118 | 4.97e-15 | 67.0 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACCTTTCATTTCTCCTT+TGG | 0.232028 | 7.1:-10333963 | None:intergenic |
| TTACCTTTCATTTCTCCTTT+GGG | 0.290146 | 7.1:-10333962 | None:intergenic |
| ATTCTTAGCTCCGGTGTTAT+CGG | 0.357276 | 7.1:-10333613 | None:intergenic |
| ACATGAAAACACCGTCCTTT+CGG | 0.371684 | 7.1:-10333794 | None:intergenic |
| GATCCGCGGGTAACAAGTTC+AGG | 0.386005 | 7.1:+10333550 | MS.gene018651:CDS |
| GGAAGGAGTGTGCTGATCTA+TGG | 0.394494 | 7.1:+10334389 | MS.gene018651:CDS |
| CCTTCCTTTGATACCTTTGA+CGG | 0.396996 | 7.1:-10333649 | None:intergenic |
| AGCACCTTCTTACGGAGATC+AGG | 0.422915 | 7.1:-10333735 | None:intergenic |
| TTCTGCTTGCGTTGGTGACA+TGG | 0.443666 | 7.1:+10333686 | MS.gene018651:CDS |
| CAATTCACCGTCGCCGCCAC+TGG | 0.459295 | 7.1:-10333588 | None:intergenic |
| TTAGCAGCACTTGCAATCCT+AGG | 0.471348 | 7.1:-10334412 | None:intergenic |
| CTCTACATCATTTCCGTCAA+AGG | 0.478393 | 7.1:+10333636 | MS.gene018651:CDS |
| GGTGATGGCCACCGTGAAGA+AGG | 0.480460 | 7.1:+10333707 | MS.gene018651:CDS |
| CGTTTGCCTTCTGCTTGCGT+TGG | 0.482632 | 7.1:+10333678 | MS.gene018651:CDS |
| TCTGCTATCACTGGTCCAAT+CGG | 0.485775 | 7.1:+10334367 | MS.gene018651:CDS |
| TAACAAGTTCAGGATGTCAC+TGG | 0.500497 | 7.1:+10333560 | MS.gene018651:CDS |
| CGGCAGGAAGCACCTTCTTA+CGG | 0.502055 | 7.1:-10333743 | None:intergenic |
| ATCAGGCTTACCCTTCTTCA+CGG | 0.504036 | 7.1:-10333718 | None:intergenic |
| CTCAGGTCGCGGAGGATCCG+CGG | 0.504873 | 7.1:+10333536 | MS.gene018651:intron |
| CTGCTATCACTGGTCCAATC+GGG | 0.511052 | 7.1:+10334368 | MS.gene018651:CDS |
| TTGTATTGTGCAGACAATGC+TGG | 0.531818 | 7.1:+10333926 | MS.gene018651:intron |
| ATTGTAGGGTCTGCTATCAC+TGG | 0.534637 | 7.1:+10334358 | MS.gene018651:intron |
| CAACGCAAGCAGAAGGCAAA+CGG | 0.538758 | 7.1:-10333677 | None:intergenic |
| TCAGCACACTCCTTCCCGAT+TGG | 0.539409 | 7.1:-10334382 | None:intergenic |
| CGCTGGCGAACGATGACGGC+AGG | 0.540043 | 7.1:-10333759 | None:intergenic |
| ACACCGTCCTTTCGGCGCCA+TGG | 0.550488 | 7.1:-10333786 | None:intergenic |
| CCGTCAAAGGTATCAAAGGA+AGG | 0.551618 | 7.1:+10333649 | MS.gene018651:CDS |
| TCAGGTCGCGGAGGATCCGC+GGG | 0.560803 | 7.1:+10333537 | MS.gene018651:intron |
| AGTGTGCTGATCTATGGCCT+AGG | 0.561029 | 7.1:+10334395 | MS.gene018651:CDS |
| TTCGGCGCCATGGTTTACGC+TGG | 0.563205 | 7.1:-10333776 | None:intergenic |
| GGTGTTATTGTTAATCCCAA+AGG | 0.565013 | 7.1:+10333947 | MS.gene018651:CDS |
| TAAGCCTGATCTCCGTAAGA+AGG | 0.569085 | 7.1:+10333731 | MS.gene018651:CDS |
| ATTTCCGTCAAAGGTATCAA+AGG | 0.575410 | 7.1:+10333645 | MS.gene018651:CDS |
| GGGTCTACCAGTGGCGGCGA+CGG | 0.576990 | 7.1:+10333581 | MS.gene018651:CDS |
| GTGATGGCCACCGTGAAGAA+GGG | 0.579374 | 7.1:+10333708 | MS.gene018651:CDS |
| TTGCGTTGGTGACATGGTGA+TGG | 0.588839 | 7.1:+10333692 | MS.gene018651:CDS |
| GATGTAGAGATTCTTAGCTC+CGG | 0.596136 | 7.1:-10333622 | None:intergenic |
| TTTACGCTGGCGAACGATGA+CGG | 0.598744 | 7.1:-10333763 | None:intergenic |
| AAACCATGGCGCCGAAAGGA+CGG | 0.604162 | 7.1:+10333783 | MS.gene018651:CDS |
| GCGTAAACCATGGCGCCGAA+AGG | 0.604166 | 7.1:+10333779 | MS.gene018651:CDS |
| AACAAGTTCAGGATGTCACT+GGG | 0.607031 | 7.1:+10333561 | MS.gene018651:CDS |
| ATGTCACCAACGCAAGCAGA+AGG | 0.609870 | 7.1:-10333684 | None:intergenic |
| GTCACTGGGTCTACCAGTGG+CGG | 0.621290 | 7.1:+10333575 | MS.gene018651:CDS |
| GTGAATTGCGCCGATAACAC+CGG | 0.624326 | 7.1:+10333603 | MS.gene018651:CDS |
| AATCCCAAAGGAGAAATGAA+AGG | 0.624552 | 7.1:+10333959 | MS.gene018651:CDS |
| TCGTTCGCCAGCGTAAACCA+TGG | 0.647146 | 7.1:+10333769 | MS.gene018651:CDS |
| GCAGCAGCAATGTCGAAGAG+AGG | 0.651240 | 7.1:+10333423 | None:intergenic |
| GATGTCACTGGGTCTACCAG+TGG | 0.653286 | 7.1:+10333572 | MS.gene018651:CDS |
| TATCACTGGTCCAATCGGGA+AGG | 0.675150 | 7.1:+10334372 | MS.gene018651:CDS |
| CATCCTGAACTTGTTACCCG+CGG | 0.683379 | 7.1:-10333553 | None:intergenic |
| AGGCTTACCCTTCTTCACGG+TGG | 0.718796 | 7.1:-10333715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATCAGTATTAAAAT+TGG | + | chr7.1:10334236-10334255 | MS.gene018651:intron | 10.0% |
| !! | TAATCAGTATTAAAATTGGT+TGG | + | chr7.1:10334240-10334259 | MS.gene018651:intron | 20.0% |
| !! | TGATTCTTACTTAATATTTC+TGG | + | chr7.1:10333902-10333921 | MS.gene018651:intron | 20.0% |
| ! | TGGGTAATATATGTAATGAT+TGG | + | chr7.1:10334054-10334073 | MS.gene018651:intron | 25.0% |
| !! | AATGATTGGTGTTTAATAAG+TGG | + | chr7.1:10334068-10334087 | MS.gene018651:intron | 25.0% |
| !! | ATTTTCATCTTCAGATTCTT+AGG | + | chr7.1:10333455-10333474 | MS.gene018651:intron | 25.0% |
| ATTAAAATTGGTTGGAGGAT+CGG | + | chr7.1:10334248-10334267 | MS.gene018651:intron | 30.0% | |
| CACAACATCAAAACCAAAAA+CGG | - | chr7.1:10334300-10334319 | None:intergenic | 30.0% | |
| TCAGTATTAAAATTGGTTGG+AGG | + | chr7.1:10334243-10334262 | MS.gene018651:intron | 30.0% | |
| TTACCTTTCATTTCTCCTTT+GGG | - | chr7.1:10333965-10333984 | None:intergenic | 30.0% | |
| TTTACCTTTCATTTCTCCTT+TGG | - | chr7.1:10333966-10333985 | None:intergenic | 30.0% | |
| ! | TTATTAAAACGCGCTTTTGT+AGG | - | chr7.1:10333498-10333517 | None:intergenic | 30.0% |
| !! | CGATTTTCATTTTGTTTCTC+AGG | + | chr7.1:10333519-10333538 | MS.gene018651:intron | 30.0% |
| !! | TATGTTTTTATCGCCGTTTT+TGG | + | chr7.1:10334284-10334303 | MS.gene018651:intron | 30.0% |
| !! | TCGTGTTGATTGTAATTGTA+GGG | + | chr7.1:10334344-10334363 | MS.gene018651:intron | 30.0% |
| !! | TTCGTGTTGATTGTAATTGT+AGG | + | chr7.1:10334343-10334362 | MS.gene018651:intron | 30.0% |
| AATCCCAAAGGAGAAATGAA+AGG | + | chr7.1:10333959-10333978 | MS.gene018651:CDS | 35.0% | |
| ACTGCTGTGTCTTCAATAAT+TGG | + | chr7.1:10334150-10334169 | MS.gene018651:intron | 35.0% | |
| ATGATAATATCGACGTAGGT+GGG | + | chr7.1:10334035-10334054 | MS.gene018651:intron | 35.0% | |
| TTAAAATTGGTTGGAGGATC+GGG | + | chr7.1:10334249-10334268 | MS.gene018651:intron | 35.0% | |
| !! | ATTTCCGTCAAAGGTATCAA+AGG | + | chr7.1:10333645-10333664 | MS.gene018651:CDS | 35.0% |
| !! | GGTGTTATTGTTAATCCCAA+AGG | + | chr7.1:10333947-10333966 | MS.gene018651:CDS | 35.0% |
| !! | GGTTTTGATGTTGTGCTTTT+AGG | + | chr7.1:10334305-10334324 | MS.gene018651:intron | 35.0% |
| AACAAGTTCAGGATGTCACT+GGG | + | chr7.1:10333561-10333580 | MS.gene018651:CDS | 40.0% | |
| ACATGAAAACACCGTCCTTT+CGG | - | chr7.1:10333797-10333816 | None:intergenic | 40.0% | |
| CACGATGATAATATCGACGT+AGG | + | chr7.1:10334031-10334050 | MS.gene018651:intron | 40.0% | |
| CCTTCCTTTGATACCTTTGA+CGG | - | chr7.1:10333652-10333671 | None:intergenic | 40.0% | |
| CTACGTCGATATTATCATCG+TGG | - | chr7.1:10334033-10334052 | None:intergenic | 40.0% | |
| CTCTACATCATTTCCGTCAA+AGG | + | chr7.1:10333636-10333655 | MS.gene018651:CDS | 40.0% | |
| GATGATAATATCGACGTAGG+TGG | + | chr7.1:10334034-10334053 | MS.gene018651:intron | 40.0% | |
| GATGTAGAGATTCTTAGCTC+CGG | - | chr7.1:10333625-10333644 | None:intergenic | 40.0% | |
| TAACAAGTTCAGGATGTCAC+TGG | + | chr7.1:10333560-10333579 | MS.gene018651:CDS | 40.0% | |
| TTGTATTGTGCAGACAATGC+TGG | + | chr7.1:10333926-10333945 | MS.gene018651:intron | 40.0% | |
| ! | GGTGTTTTCATGTACTTCGA+AGG | + | chr7.1:10333804-10333823 | MS.gene018651:CDS | 40.0% |
| !! | ATTCTTAGCTCCGGTGTTAT+CGG | - | chr7.1:10333616-10333635 | None:intergenic | 40.0% |
| !! | TCATTTTGTTTCTCAGGTCG+CGG | + | chr7.1:10333525-10333544 | MS.gene018651:intron | 40.0% |
| ATCAGGCTTACCCTTCTTCA+CGG | - | chr7.1:10333721-10333740 | None:intergenic | 45.0% | |
| ATTGTAGGGTCTGCTATCAC+TGG | + | chr7.1:10334358-10334377 | MS.gene018651:intron | 45.0% | |
| TAAGCCTGATCTCCGTAAGA+AGG | + | chr7.1:10333731-10333750 | MS.gene018651:CDS | 45.0% | |
| TCTGCTATCACTGGTCCAAT+CGG | + | chr7.1:10334367-10334386 | MS.gene018651:CDS | 45.0% | |
| TTAGCAGCACTTGCAATCCT+AGG | - | chr7.1:10334415-10334434 | None:intergenic | 45.0% | |
| !! | CCGTCAAAGGTATCAAAGGA+AGG | + | chr7.1:10333649-10333668 | MS.gene018651:CDS | 45.0% |
| AGCACCTTCTTACGGAGATC+AGG | - | chr7.1:10333738-10333757 | None:intergenic | 50.0% | |
| ATGTCACCAACGCAAGCAGA+AGG | - | chr7.1:10333687-10333706 | None:intergenic | 50.0% | |
| CAACGCAAGCAGAAGGCAAA+CGG | - | chr7.1:10333680-10333699 | None:intergenic | 50.0% | |
| CTGCTATCACTGGTCCAATC+GGG | + | chr7.1:10334368-10334387 | MS.gene018651:CDS | 50.0% | |
| TATCACTGGTCCAATCGGGA+AGG | + | chr7.1:10334372-10334391 | MS.gene018651:CDS | 50.0% | |
| TTTACGCTGGCGAACGATGA+CGG | - | chr7.1:10333766-10333785 | None:intergenic | 50.0% | |
| ! | AGTGTGCTGATCTATGGCCT+AGG | + | chr7.1:10334395-10334414 | MS.gene018651:CDS | 50.0% |
| ! | GGAAGGAGTGTGCTGATCTA+TGG | + | chr7.1:10334389-10334408 | MS.gene018651:CDS | 50.0% |
| ! | GTGAATTGCGCCGATAACAC+CGG | + | chr7.1:10333603-10333622 | MS.gene018651:CDS | 50.0% |
| !! | CATCCTGAACTTGTTACCCG+CGG | - | chr7.1:10333556-10333575 | None:intergenic | 50.0% |
| !! | TTCTGCTTGCGTTGGTGACA+TGG | + | chr7.1:10333686-10333705 | MS.gene018651:CDS | 50.0% |
| !! | TTGCGTTGGTGACATGGTGA+TGG | + | chr7.1:10333692-10333711 | MS.gene018651:CDS | 50.0% |
| !! | TTTTGTTTCTCAGGTCGCGG+AGG | + | chr7.1:10333528-10333547 | MS.gene018651:intron | 50.0% |
| AGGCTTACCCTTCTTCACGG+TGG | - | chr7.1:10333718-10333737 | None:intergenic | 55.0% | |
| CGTTTGCCTTCTGCTTGCGT+TGG | + | chr7.1:10333678-10333697 | MS.gene018651:CDS | 55.0% | |
| GATCCGCGGGTAACAAGTTC+AGG | + | chr7.1:10333550-10333569 | MS.gene018651:CDS | 55.0% | |
| GATGTCACTGGGTCTACCAG+TGG | + | chr7.1:10333572-10333591 | MS.gene018651:CDS | 55.0% | |
| GTGATGGCCACCGTGAAGAA+GGG | + | chr7.1:10333708-10333727 | MS.gene018651:CDS | 55.0% | |
| TCAGCACACTCCTTCCCGAT+TGG | - | chr7.1:10334385-10334404 | None:intergenic | 55.0% | |
| TCGTTCGCCAGCGTAAACCA+TGG | + | chr7.1:10333769-10333788 | MS.gene018651:CDS | 55.0% | |
| ! | AAACCATGGCGCCGAAAGGA+CGG | + | chr7.1:10333783-10333802 | MS.gene018651:CDS | 55.0% |
| !! | CGGCAGGAAGCACCTTCTTA+CGG | - | chr7.1:10333746-10333765 | None:intergenic | 55.0% |
| GTCACTGGGTCTACCAGTGG+CGG | + | chr7.1:10333575-10333594 | MS.gene018651:CDS | 60.0% | |
| TTCGGCGCCATGGTTTACGC+TGG | - | chr7.1:10333779-10333798 | None:intergenic | 60.0% | |
| ! | GCGTAAACCATGGCGCCGAA+AGG | + | chr7.1:10333779-10333798 | MS.gene018651:CDS | 60.0% |
| ! | GGTGATGGCCACCGTGAAGA+AGG | + | chr7.1:10333707-10333726 | MS.gene018651:CDS | 60.0% |
| ACACCGTCCTTTCGGCGCCA+TGG | - | chr7.1:10333789-10333808 | None:intergenic | 65.0% | |
| CAATTCACCGTCGCCGCCAC+TGG | - | chr7.1:10333591-10333610 | None:intergenic | 65.0% | |
| CTCAGGTCGCGGAGGATCCG+CGG | + | chr7.1:10333536-10333555 | MS.gene018651:intron | 70.0% | |
| GGGTCTACCAGTGGCGGCGA+CGG | + | chr7.1:10333581-10333600 | MS.gene018651:CDS | 70.0% | |
| TCAGGTCGCGGAGGATCCGC+GGG | + | chr7.1:10333537-10333556 | MS.gene018651:intron | 70.0% | |
| ! | CGCTGGCGAACGATGACGGC+AGG | - | chr7.1:10333762-10333781 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 10333432 | 10334447 | 10333432 | ID=MS.gene018651 |
| chr7.1 | mRNA | 10333432 | 10334447 | 10333432 | ID=MS.gene018651.t1;Parent=MS.gene018651 |
| chr7.1 | exon | 10333432 | 10333444 | 10333432 | ID=MS.gene018651.t1.exon1;Parent=MS.gene018651.t1 |
| chr7.1 | CDS | 10333432 | 10333444 | 10333432 | ID=cds.MS.gene018651.t1;Parent=MS.gene018651.t1 |
| chr7.1 | exon | 10333541 | 10333825 | 10333541 | ID=MS.gene018651.t1.exon2;Parent=MS.gene018651.t1 |
| chr7.1 | CDS | 10333541 | 10333825 | 10333541 | ID=cds.MS.gene018651.t1;Parent=MS.gene018651.t1 |
| chr7.1 | exon | 10333939 | 10333980 | 10333939 | ID=MS.gene018651.t1.exon3;Parent=MS.gene018651.t1 |
| chr7.1 | CDS | 10333939 | 10333980 | 10333939 | ID=cds.MS.gene018651.t1;Parent=MS.gene018651.t1 |
| chr7.1 | exon | 10334365 | 10334447 | 10334365 | ID=MS.gene018651.t1.exon4;Parent=MS.gene018651.t1 |
| chr7.1 | CDS | 10334365 | 10334447 | 10334365 | ID=cds.MS.gene018651.t1;Parent=MS.gene018651.t1 |
| Gene Sequence |
| Protein sequence |