Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035194.t1 | XP_004296407.1 | 100 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 5.40E-73 | 283.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035194.t1 | P49690 | 98.6 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 6.4e-75 | 281.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035194.t1 | M5WP13 | 100.0 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 3.9e-73 | 283.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035194.t1 | MTR_7g098290 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.93e-98 | 278 |
MS.gene035194.t1 | MTR_1g069585 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.93e-98 | 278 |
MS.gene035194.t1 | MTR_7g098290 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 8.58e-87 | 249 |
MS.gene035194.t1 | MTR_1g026090 | 81.481 | 135 | 10 | 1 | 2 | 136 | 42 | 161 | 3.07e-71 | 212 |
MS.gene035194.t1 | MTR_5g054560 | 68.800 | 125 | 15 | 1 | 16 | 140 | 1 | 101 | 1.78e-53 | 164 |
MS.gene035194.t1 | MTR_5g464620 | 89.796 | 49 | 5 | 0 | 14 | 62 | 16 | 64 | 3.73e-25 | 91.7 |
MS.gene035194.t1 | MTR_2g070580 | 92.683 | 41 | 3 | 0 | 100 | 140 | 87 | 127 | 2.62e-21 | 83.2 |
MS.gene035194.t1 | MTR_1779s0020 | 36.522 | 115 | 65 | 3 | 26 | 136 | 8 | 118 | 3.65e-16 | 70.1 |
MS.gene035194.t1 | MTR_4g051390 | 36.522 | 115 | 65 | 3 | 26 | 136 | 8 | 118 | 4.98e-16 | 69.7 |
MS.gene035194.t1 | MTR_2g087550 | 36.792 | 106 | 60 | 2 | 26 | 128 | 8 | 109 | 1.55e-14 | 67.8 |
MS.gene035194.t1 | MTR_0002s0780 | 34.426 | 122 | 73 | 3 | 23 | 140 | 132 | 250 | 1.92e-14 | 68.2 |
MS.gene035194.t1 | MTR_4g017930 | 80.556 | 36 | 5 | 1 | 104 | 139 | 13 | 46 | 1.09e-11 | 58.5 |
MS.gene035194.t1 | MTR_4g066540 | 72.500 | 40 | 7 | 1 | 100 | 139 | 54 | 89 | 7.28e-11 | 55.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035194.t1 | AT3G04400 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
MS.gene035194.t1 | AT2G33370 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
MS.gene035194.t1 | AT1G04480 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
MS.gene035194.t1 | AT3G04400 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.64e-88 | 252 |
MS.gene035194.t1 | AT2G33370 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.64e-88 | 252 |
MS.gene035194.t1 | ATCG00780 | 34.783 | 115 | 67 | 3 | 26 | 136 | 8 | 118 | 4.97e-15 | 67.0 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTACCTTTCATTTCTCCTT+TGG | 0.232028 | 7.2:-12913467 | None:intergenic |
TTACCTTTCATTTCTCCTTT+GGG | 0.290146 | 7.2:-12913466 | None:intergenic |
ATTCTTAGCTCCGGTGTTAT+CGG | 0.357276 | 7.2:-12913117 | None:intergenic |
ACATGAAAACACCGTCCTTT+CGG | 0.371684 | 7.2:-12913298 | None:intergenic |
GATCCGCGGGTAACAAGTTC+AGG | 0.386005 | 7.2:+12913054 | MS.gene035194:CDS |
GGAAGGAGTGTGCTGATCTA+TGG | 0.394494 | 7.2:+12913893 | MS.gene035194:CDS |
CCTTCCTTTGATACCTTTGA+CGG | 0.396996 | 7.2:-12913153 | None:intergenic |
AGCACCTTCTTACGGAGATC+AGG | 0.422915 | 7.2:-12913239 | None:intergenic |
TTCTGCTTGCGTTGGTGACA+TGG | 0.443666 | 7.2:+12913190 | MS.gene035194:CDS |
CAATTCACCGTCGCCGCCAC+TGG | 0.459295 | 7.2:-12913092 | None:intergenic |
TTAGCAGCACTTGCAATCCT+AGG | 0.471348 | 7.2:-12913916 | None:intergenic |
CTCTACATCATTTCCGTCAA+AGG | 0.478393 | 7.2:+12913140 | MS.gene035194:CDS |
GGTGATGGCCACCGTGAAGA+AGG | 0.480460 | 7.2:+12913211 | MS.gene035194:CDS |
CGTTTGCCTTCTGCTTGCGT+TGG | 0.482632 | 7.2:+12913182 | MS.gene035194:CDS |
TCTGCTATCACTGGTCCAAT+CGG | 0.485775 | 7.2:+12913871 | MS.gene035194:CDS |
TAACAAGTTCAGGATGTCAC+TGG | 0.500497 | 7.2:+12913064 | MS.gene035194:CDS |
CGGCAGGAAGCACCTTCTTA+CGG | 0.502055 | 7.2:-12913247 | None:intergenic |
ATCAGGCTTACCCTTCTTCA+CGG | 0.504036 | 7.2:-12913222 | None:intergenic |
CTCAGGTCGCGGAGGATCCG+CGG | 0.504873 | 7.2:+12913040 | MS.gene035194:intron |
CTGCTATCACTGGTCCAATC+GGG | 0.511052 | 7.2:+12913872 | MS.gene035194:CDS |
TTGTATTGTGCAGACAATGC+TGG | 0.531818 | 7.2:+12913430 | MS.gene035194:intron |
ATTGTAGGGTCTGCTATCAC+TGG | 0.534637 | 7.2:+12913862 | MS.gene035194:intron |
CAACGCAAGCAGAAGGCAAA+CGG | 0.538758 | 7.2:-12913181 | None:intergenic |
TCAGCACACTCCTTCCCGAT+TGG | 0.539409 | 7.2:-12913886 | None:intergenic |
CGCTGGCGAACGATGACGGC+AGG | 0.540043 | 7.2:-12913263 | None:intergenic |
ACACCGTCCTTTCGGCGCCA+TGG | 0.550488 | 7.2:-12913290 | None:intergenic |
CCGTCAAAGGTATCAAAGGA+AGG | 0.551618 | 7.2:+12913153 | MS.gene035194:CDS |
TCAGGTCGCGGAGGATCCGC+GGG | 0.560803 | 7.2:+12913041 | MS.gene035194:intron |
AGTGTGCTGATCTATGGCCT+AGG | 0.561029 | 7.2:+12913899 | MS.gene035194:CDS |
TTCGGCGCCATGGTTTACGC+TGG | 0.563205 | 7.2:-12913280 | None:intergenic |
GGTGTTATTGTTAATCCCAA+AGG | 0.565013 | 7.2:+12913451 | MS.gene035194:CDS |
TAAGCCTGATCTCCGTAAGA+AGG | 0.569085 | 7.2:+12913235 | MS.gene035194:CDS |
ATTTCCGTCAAAGGTATCAA+AGG | 0.575410 | 7.2:+12913149 | MS.gene035194:CDS |
GGGTCTACCAGTGGCGGCGA+CGG | 0.576990 | 7.2:+12913085 | MS.gene035194:CDS |
GTGATGGCCACCGTGAAGAA+GGG | 0.579374 | 7.2:+12913212 | MS.gene035194:CDS |
TTGCGTTGGTGACATGGTGA+TGG | 0.588839 | 7.2:+12913196 | MS.gene035194:CDS |
GATGTAGAGATTCTTAGCTC+CGG | 0.596136 | 7.2:-12913126 | None:intergenic |
TTTACGCTGGCGAACGATGA+CGG | 0.598744 | 7.2:-12913267 | None:intergenic |
AAACCATGGCGCCGAAAGGA+CGG | 0.604162 | 7.2:+12913287 | MS.gene035194:CDS |
GCGTAAACCATGGCGCCGAA+AGG | 0.604166 | 7.2:+12913283 | MS.gene035194:CDS |
AACAAGTTCAGGATGTCACT+GGG | 0.607031 | 7.2:+12913065 | MS.gene035194:CDS |
ATGTCACCAACGCAAGCAGA+AGG | 0.609870 | 7.2:-12913188 | None:intergenic |
GTCACTGGGTCTACCAGTGG+CGG | 0.621290 | 7.2:+12913079 | MS.gene035194:CDS |
GTGAATTGCGCCGATAACAC+CGG | 0.624326 | 7.2:+12913107 | MS.gene035194:CDS |
AATCCCAAAGGAGAAATGAA+AGG | 0.624552 | 7.2:+12913463 | MS.gene035194:CDS |
GCAGCAGCAATGTCGAAGAG+AGG | 0.645193 | 7.2:+12912927 | None:intergenic |
TCGTTCGCCAGCGTAAACCA+TGG | 0.647146 | 7.2:+12913273 | MS.gene035194:CDS |
GATGTCACTGGGTCTACCAG+TGG | 0.653286 | 7.2:+12913076 | MS.gene035194:CDS |
TATCACTGGTCCAATCGGGA+AGG | 0.675150 | 7.2:+12913876 | MS.gene035194:CDS |
CATCCTGAACTTGTTACCCG+CGG | 0.683379 | 7.2:-12913057 | None:intergenic |
AGGCTTACCCTTCTTCACGG+TGG | 0.718796 | 7.2:-12913219 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATAATCAGTATTAAAAT+TGG | + | chr7.2:12913740-12913759 | MS.gene035194:intron | 10.0% |
!! | TAATCAGTATTAAAATTGGT+TGG | + | chr7.2:12913744-12913763 | MS.gene035194:intron | 20.0% |
!! | TGATTCTTACTTAATATTTC+TGG | + | chr7.2:12913406-12913425 | MS.gene035194:intron | 20.0% |
! | TGGGTAATATATGTAATGAT+TGG | + | chr7.2:12913558-12913577 | MS.gene035194:intron | 25.0% |
!! | AATGATTGGTGTTTAATAAG+TGG | + | chr7.2:12913572-12913591 | MS.gene035194:intron | 25.0% |
!! | ATTTTCATCTTCAGATTCTT+AGG | + | chr7.2:12912959-12912978 | MS.gene035194:intron | 25.0% |
ATTAAAATTGGTTGGAGGAT+CGG | + | chr7.2:12913752-12913771 | MS.gene035194:intron | 30.0% | |
CACAACATCAAAACCAAAAA+CGG | - | chr7.2:12913804-12913823 | None:intergenic | 30.0% | |
TCAGTATTAAAATTGGTTGG+AGG | + | chr7.2:12913747-12913766 | MS.gene035194:intron | 30.0% | |
TTACCTTTCATTTCTCCTTT+GGG | - | chr7.2:12913469-12913488 | None:intergenic | 30.0% | |
TTTACCTTTCATTTCTCCTT+TGG | - | chr7.2:12913470-12913489 | None:intergenic | 30.0% | |
! | TTATTAAAACGCGCTTTTGT+AGG | - | chr7.2:12913002-12913021 | None:intergenic | 30.0% |
!! | CGATTTTCATTTTGTTTCTC+AGG | + | chr7.2:12913023-12913042 | MS.gene035194:intron | 30.0% |
!! | TATGTTTTTATCGCCGTTTT+TGG | + | chr7.2:12913788-12913807 | MS.gene035194:intron | 30.0% |
!! | TCGTGTTGATTGTAATTGTA+GGG | + | chr7.2:12913848-12913867 | MS.gene035194:intron | 30.0% |
!! | TTCGTGTTGATTGTAATTGT+AGG | + | chr7.2:12913847-12913866 | MS.gene035194:intron | 30.0% |
AATCCCAAAGGAGAAATGAA+AGG | + | chr7.2:12913463-12913482 | MS.gene035194:CDS | 35.0% | |
ACTGCTGTGTCTTCAATAAT+TGG | + | chr7.2:12913654-12913673 | MS.gene035194:intron | 35.0% | |
ATGATAATATCGACGTAGGT+GGG | + | chr7.2:12913539-12913558 | MS.gene035194:intron | 35.0% | |
TTAAAATTGGTTGGAGGATC+GGG | + | chr7.2:12913753-12913772 | MS.gene035194:intron | 35.0% | |
!! | ATTTCCGTCAAAGGTATCAA+AGG | + | chr7.2:12913149-12913168 | MS.gene035194:CDS | 35.0% |
!! | GGTGTTATTGTTAATCCCAA+AGG | + | chr7.2:12913451-12913470 | MS.gene035194:CDS | 35.0% |
!! | GGTTTTGATGTTGTGCTTTT+TGG | + | chr7.2:12913809-12913828 | MS.gene035194:intron | 35.0% |
AACAAGTTCAGGATGTCACT+GGG | + | chr7.2:12913065-12913084 | MS.gene035194:CDS | 40.0% | |
ACATGAAAACACCGTCCTTT+CGG | - | chr7.2:12913301-12913320 | None:intergenic | 40.0% | |
CACGATGATAATATCGACGT+AGG | + | chr7.2:12913535-12913554 | MS.gene035194:intron | 40.0% | |
CCTTCCTTTGATACCTTTGA+CGG | - | chr7.2:12913156-12913175 | None:intergenic | 40.0% | |
CTACGTCGATATTATCATCG+TGG | - | chr7.2:12913537-12913556 | None:intergenic | 40.0% | |
CTCTACATCATTTCCGTCAA+AGG | + | chr7.2:12913140-12913159 | MS.gene035194:CDS | 40.0% | |
GATGATAATATCGACGTAGG+TGG | + | chr7.2:12913538-12913557 | MS.gene035194:intron | 40.0% | |
GATGTAGAGATTCTTAGCTC+CGG | - | chr7.2:12913129-12913148 | None:intergenic | 40.0% | |
TAACAAGTTCAGGATGTCAC+TGG | + | chr7.2:12913064-12913083 | MS.gene035194:CDS | 40.0% | |
TTGTATTGTGCAGACAATGC+TGG | + | chr7.2:12913430-12913449 | MS.gene035194:intron | 40.0% | |
! | GGTGTTTTCATGTACTTCGA+AGG | + | chr7.2:12913308-12913327 | MS.gene035194:CDS | 40.0% |
!! | ATTCTTAGCTCCGGTGTTAT+CGG | - | chr7.2:12913120-12913139 | None:intergenic | 40.0% |
!! | TCATTTTGTTTCTCAGGTCG+CGG | + | chr7.2:12913029-12913048 | MS.gene035194:intron | 40.0% |
ATCAGGCTTACCCTTCTTCA+CGG | - | chr7.2:12913225-12913244 | None:intergenic | 45.0% | |
ATTGTAGGGTCTGCTATCAC+TGG | + | chr7.2:12913862-12913881 | MS.gene035194:intron | 45.0% | |
TAAGCCTGATCTCCGTAAGA+AGG | + | chr7.2:12913235-12913254 | MS.gene035194:CDS | 45.0% | |
TCTGCTATCACTGGTCCAAT+CGG | + | chr7.2:12913871-12913890 | MS.gene035194:CDS | 45.0% | |
TTAGCAGCACTTGCAATCCT+AGG | - | chr7.2:12913919-12913938 | None:intergenic | 45.0% | |
!! | CCGTCAAAGGTATCAAAGGA+AGG | + | chr7.2:12913153-12913172 | MS.gene035194:CDS | 45.0% |
AGCACCTTCTTACGGAGATC+AGG | - | chr7.2:12913242-12913261 | None:intergenic | 50.0% | |
ATGTCACCAACGCAAGCAGA+AGG | - | chr7.2:12913191-12913210 | None:intergenic | 50.0% | |
CAACGCAAGCAGAAGGCAAA+CGG | - | chr7.2:12913184-12913203 | None:intergenic | 50.0% | |
CTGCTATCACTGGTCCAATC+GGG | + | chr7.2:12913872-12913891 | MS.gene035194:CDS | 50.0% | |
TATCACTGGTCCAATCGGGA+AGG | + | chr7.2:12913876-12913895 | MS.gene035194:CDS | 50.0% | |
TTTACGCTGGCGAACGATGA+CGG | - | chr7.2:12913270-12913289 | None:intergenic | 50.0% | |
! | AGTGTGCTGATCTATGGCCT+AGG | + | chr7.2:12913899-12913918 | MS.gene035194:CDS | 50.0% |
! | GGAAGGAGTGTGCTGATCTA+TGG | + | chr7.2:12913893-12913912 | MS.gene035194:CDS | 50.0% |
! | GTGAATTGCGCCGATAACAC+CGG | + | chr7.2:12913107-12913126 | MS.gene035194:CDS | 50.0% |
!! | CATCCTGAACTTGTTACCCG+CGG | - | chr7.2:12913060-12913079 | None:intergenic | 50.0% |
!! | TTCTGCTTGCGTTGGTGACA+TGG | + | chr7.2:12913190-12913209 | MS.gene035194:CDS | 50.0% |
!! | TTGCGTTGGTGACATGGTGA+TGG | + | chr7.2:12913196-12913215 | MS.gene035194:CDS | 50.0% |
!! | TTTTGTTTCTCAGGTCGCGG+AGG | + | chr7.2:12913032-12913051 | MS.gene035194:intron | 50.0% |
AGGCTTACCCTTCTTCACGG+TGG | - | chr7.2:12913222-12913241 | None:intergenic | 55.0% | |
CGTTTGCCTTCTGCTTGCGT+TGG | + | chr7.2:12913182-12913201 | MS.gene035194:CDS | 55.0% | |
GATCCGCGGGTAACAAGTTC+AGG | + | chr7.2:12913054-12913073 | MS.gene035194:CDS | 55.0% | |
GATGTCACTGGGTCTACCAG+TGG | + | chr7.2:12913076-12913095 | MS.gene035194:CDS | 55.0% | |
GTGATGGCCACCGTGAAGAA+GGG | + | chr7.2:12913212-12913231 | MS.gene035194:CDS | 55.0% | |
TCAGCACACTCCTTCCCGAT+TGG | - | chr7.2:12913889-12913908 | None:intergenic | 55.0% | |
TCGTTCGCCAGCGTAAACCA+TGG | + | chr7.2:12913273-12913292 | MS.gene035194:CDS | 55.0% | |
! | AAACCATGGCGCCGAAAGGA+CGG | + | chr7.2:12913287-12913306 | MS.gene035194:CDS | 55.0% |
!! | CGGCAGGAAGCACCTTCTTA+CGG | - | chr7.2:12913250-12913269 | None:intergenic | 55.0% |
GTCACTGGGTCTACCAGTGG+CGG | + | chr7.2:12913079-12913098 | MS.gene035194:CDS | 60.0% | |
TTCGGCGCCATGGTTTACGC+TGG | - | chr7.2:12913283-12913302 | None:intergenic | 60.0% | |
! | GCGTAAACCATGGCGCCGAA+AGG | + | chr7.2:12913283-12913302 | MS.gene035194:CDS | 60.0% |
! | GGTGATGGCCACCGTGAAGA+AGG | + | chr7.2:12913211-12913230 | MS.gene035194:CDS | 60.0% |
ACACCGTCCTTTCGGCGCCA+TGG | - | chr7.2:12913293-12913312 | None:intergenic | 65.0% | |
CAATTCACCGTCGCCGCCAC+TGG | - | chr7.2:12913095-12913114 | None:intergenic | 65.0% | |
CTCAGGTCGCGGAGGATCCG+CGG | + | chr7.2:12913040-12913059 | MS.gene035194:intron | 70.0% | |
GGGTCTACCAGTGGCGGCGA+CGG | + | chr7.2:12913085-12913104 | MS.gene035194:CDS | 70.0% | |
TCAGGTCGCGGAGGATCCGC+GGG | + | chr7.2:12913041-12913060 | MS.gene035194:intron | 70.0% | |
! | CGCTGGCGAACGATGACGGC+AGG | - | chr7.2:12913266-12913285 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 12912936 | 12913951 | 12912936 | ID=MS.gene035194 |
chr7.2 | mRNA | 12912936 | 12913951 | 12912936 | ID=MS.gene035194.t1;Parent=MS.gene035194 |
chr7.2 | exon | 12912936 | 12912948 | 12912936 | ID=MS.gene035194.t1.exon1;Parent=MS.gene035194.t1 |
chr7.2 | CDS | 12912936 | 12912948 | 12912936 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
chr7.2 | exon | 12913045 | 12913329 | 12913045 | ID=MS.gene035194.t1.exon2;Parent=MS.gene035194.t1 |
chr7.2 | CDS | 12913045 | 12913329 | 12913045 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
chr7.2 | exon | 12913443 | 12913484 | 12913443 | ID=MS.gene035194.t1.exon3;Parent=MS.gene035194.t1 |
chr7.2 | CDS | 12913443 | 12913484 | 12913443 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
chr7.2 | exon | 12913869 | 12913951 | 12913869 | ID=MS.gene035194.t1.exon4;Parent=MS.gene035194.t1 |
chr7.2 | CDS | 12913869 | 12913951 | 12913869 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
Gene Sequence |
Protein sequence |