Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035194.t1 | XP_004296407.1 | 100 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 5.40E-73 | 283.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035194.t1 | P49690 | 98.6 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 6.4e-75 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035194.t1 | M5WP13 | 100.0 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 3.9e-73 | 283.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035194.t1 | MTR_7g098290 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.93e-98 | 278 |
| MS.gene035194.t1 | MTR_1g069585 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.93e-98 | 278 |
| MS.gene035194.t1 | MTR_7g098290 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 8.58e-87 | 249 |
| MS.gene035194.t1 | MTR_1g026090 | 81.481 | 135 | 10 | 1 | 2 | 136 | 42 | 161 | 3.07e-71 | 212 |
| MS.gene035194.t1 | MTR_5g054560 | 68.800 | 125 | 15 | 1 | 16 | 140 | 1 | 101 | 1.78e-53 | 164 |
| MS.gene035194.t1 | MTR_5g464620 | 89.796 | 49 | 5 | 0 | 14 | 62 | 16 | 64 | 3.73e-25 | 91.7 |
| MS.gene035194.t1 | MTR_2g070580 | 92.683 | 41 | 3 | 0 | 100 | 140 | 87 | 127 | 2.62e-21 | 83.2 |
| MS.gene035194.t1 | MTR_1779s0020 | 36.522 | 115 | 65 | 3 | 26 | 136 | 8 | 118 | 3.65e-16 | 70.1 |
| MS.gene035194.t1 | MTR_4g051390 | 36.522 | 115 | 65 | 3 | 26 | 136 | 8 | 118 | 4.98e-16 | 69.7 |
| MS.gene035194.t1 | MTR_2g087550 | 36.792 | 106 | 60 | 2 | 26 | 128 | 8 | 109 | 1.55e-14 | 67.8 |
| MS.gene035194.t1 | MTR_0002s0780 | 34.426 | 122 | 73 | 3 | 23 | 140 | 132 | 250 | 1.92e-14 | 68.2 |
| MS.gene035194.t1 | MTR_4g017930 | 80.556 | 36 | 5 | 1 | 104 | 139 | 13 | 46 | 1.09e-11 | 58.5 |
| MS.gene035194.t1 | MTR_4g066540 | 72.500 | 40 | 7 | 1 | 100 | 139 | 54 | 89 | 7.28e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035194.t1 | AT3G04400 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
| MS.gene035194.t1 | AT2G33370 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
| MS.gene035194.t1 | AT1G04480 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.65e-98 | 279 |
| MS.gene035194.t1 | AT3G04400 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.64e-88 | 252 |
| MS.gene035194.t1 | AT2G33370 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.64e-88 | 252 |
| MS.gene035194.t1 | ATCG00780 | 34.783 | 115 | 67 | 3 | 26 | 136 | 8 | 118 | 4.97e-15 | 67.0 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACCTTTCATTTCTCCTT+TGG | 0.232028 | 7.2:-12913467 | None:intergenic |
| TTACCTTTCATTTCTCCTTT+GGG | 0.290146 | 7.2:-12913466 | None:intergenic |
| ATTCTTAGCTCCGGTGTTAT+CGG | 0.357276 | 7.2:-12913117 | None:intergenic |
| ACATGAAAACACCGTCCTTT+CGG | 0.371684 | 7.2:-12913298 | None:intergenic |
| GATCCGCGGGTAACAAGTTC+AGG | 0.386005 | 7.2:+12913054 | MS.gene035194:CDS |
| GGAAGGAGTGTGCTGATCTA+TGG | 0.394494 | 7.2:+12913893 | MS.gene035194:CDS |
| CCTTCCTTTGATACCTTTGA+CGG | 0.396996 | 7.2:-12913153 | None:intergenic |
| AGCACCTTCTTACGGAGATC+AGG | 0.422915 | 7.2:-12913239 | None:intergenic |
| TTCTGCTTGCGTTGGTGACA+TGG | 0.443666 | 7.2:+12913190 | MS.gene035194:CDS |
| CAATTCACCGTCGCCGCCAC+TGG | 0.459295 | 7.2:-12913092 | None:intergenic |
| TTAGCAGCACTTGCAATCCT+AGG | 0.471348 | 7.2:-12913916 | None:intergenic |
| CTCTACATCATTTCCGTCAA+AGG | 0.478393 | 7.2:+12913140 | MS.gene035194:CDS |
| GGTGATGGCCACCGTGAAGA+AGG | 0.480460 | 7.2:+12913211 | MS.gene035194:CDS |
| CGTTTGCCTTCTGCTTGCGT+TGG | 0.482632 | 7.2:+12913182 | MS.gene035194:CDS |
| TCTGCTATCACTGGTCCAAT+CGG | 0.485775 | 7.2:+12913871 | MS.gene035194:CDS |
| TAACAAGTTCAGGATGTCAC+TGG | 0.500497 | 7.2:+12913064 | MS.gene035194:CDS |
| CGGCAGGAAGCACCTTCTTA+CGG | 0.502055 | 7.2:-12913247 | None:intergenic |
| ATCAGGCTTACCCTTCTTCA+CGG | 0.504036 | 7.2:-12913222 | None:intergenic |
| CTCAGGTCGCGGAGGATCCG+CGG | 0.504873 | 7.2:+12913040 | MS.gene035194:intron |
| CTGCTATCACTGGTCCAATC+GGG | 0.511052 | 7.2:+12913872 | MS.gene035194:CDS |
| TTGTATTGTGCAGACAATGC+TGG | 0.531818 | 7.2:+12913430 | MS.gene035194:intron |
| ATTGTAGGGTCTGCTATCAC+TGG | 0.534637 | 7.2:+12913862 | MS.gene035194:intron |
| CAACGCAAGCAGAAGGCAAA+CGG | 0.538758 | 7.2:-12913181 | None:intergenic |
| TCAGCACACTCCTTCCCGAT+TGG | 0.539409 | 7.2:-12913886 | None:intergenic |
| CGCTGGCGAACGATGACGGC+AGG | 0.540043 | 7.2:-12913263 | None:intergenic |
| ACACCGTCCTTTCGGCGCCA+TGG | 0.550488 | 7.2:-12913290 | None:intergenic |
| CCGTCAAAGGTATCAAAGGA+AGG | 0.551618 | 7.2:+12913153 | MS.gene035194:CDS |
| TCAGGTCGCGGAGGATCCGC+GGG | 0.560803 | 7.2:+12913041 | MS.gene035194:intron |
| AGTGTGCTGATCTATGGCCT+AGG | 0.561029 | 7.2:+12913899 | MS.gene035194:CDS |
| TTCGGCGCCATGGTTTACGC+TGG | 0.563205 | 7.2:-12913280 | None:intergenic |
| GGTGTTATTGTTAATCCCAA+AGG | 0.565013 | 7.2:+12913451 | MS.gene035194:CDS |
| TAAGCCTGATCTCCGTAAGA+AGG | 0.569085 | 7.2:+12913235 | MS.gene035194:CDS |
| ATTTCCGTCAAAGGTATCAA+AGG | 0.575410 | 7.2:+12913149 | MS.gene035194:CDS |
| GGGTCTACCAGTGGCGGCGA+CGG | 0.576990 | 7.2:+12913085 | MS.gene035194:CDS |
| GTGATGGCCACCGTGAAGAA+GGG | 0.579374 | 7.2:+12913212 | MS.gene035194:CDS |
| TTGCGTTGGTGACATGGTGA+TGG | 0.588839 | 7.2:+12913196 | MS.gene035194:CDS |
| GATGTAGAGATTCTTAGCTC+CGG | 0.596136 | 7.2:-12913126 | None:intergenic |
| TTTACGCTGGCGAACGATGA+CGG | 0.598744 | 7.2:-12913267 | None:intergenic |
| AAACCATGGCGCCGAAAGGA+CGG | 0.604162 | 7.2:+12913287 | MS.gene035194:CDS |
| GCGTAAACCATGGCGCCGAA+AGG | 0.604166 | 7.2:+12913283 | MS.gene035194:CDS |
| AACAAGTTCAGGATGTCACT+GGG | 0.607031 | 7.2:+12913065 | MS.gene035194:CDS |
| ATGTCACCAACGCAAGCAGA+AGG | 0.609870 | 7.2:-12913188 | None:intergenic |
| GTCACTGGGTCTACCAGTGG+CGG | 0.621290 | 7.2:+12913079 | MS.gene035194:CDS |
| GTGAATTGCGCCGATAACAC+CGG | 0.624326 | 7.2:+12913107 | MS.gene035194:CDS |
| AATCCCAAAGGAGAAATGAA+AGG | 0.624552 | 7.2:+12913463 | MS.gene035194:CDS |
| GCAGCAGCAATGTCGAAGAG+AGG | 0.645193 | 7.2:+12912927 | None:intergenic |
| TCGTTCGCCAGCGTAAACCA+TGG | 0.647146 | 7.2:+12913273 | MS.gene035194:CDS |
| GATGTCACTGGGTCTACCAG+TGG | 0.653286 | 7.2:+12913076 | MS.gene035194:CDS |
| TATCACTGGTCCAATCGGGA+AGG | 0.675150 | 7.2:+12913876 | MS.gene035194:CDS |
| CATCCTGAACTTGTTACCCG+CGG | 0.683379 | 7.2:-12913057 | None:intergenic |
| AGGCTTACCCTTCTTCACGG+TGG | 0.718796 | 7.2:-12913219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATCAGTATTAAAAT+TGG | + | chr7.2:12913740-12913759 | MS.gene035194:intron | 10.0% |
| !! | TAATCAGTATTAAAATTGGT+TGG | + | chr7.2:12913744-12913763 | MS.gene035194:intron | 20.0% |
| !! | TGATTCTTACTTAATATTTC+TGG | + | chr7.2:12913406-12913425 | MS.gene035194:intron | 20.0% |
| ! | TGGGTAATATATGTAATGAT+TGG | + | chr7.2:12913558-12913577 | MS.gene035194:intron | 25.0% |
| !! | AATGATTGGTGTTTAATAAG+TGG | + | chr7.2:12913572-12913591 | MS.gene035194:intron | 25.0% |
| !! | ATTTTCATCTTCAGATTCTT+AGG | + | chr7.2:12912959-12912978 | MS.gene035194:intron | 25.0% |
| ATTAAAATTGGTTGGAGGAT+CGG | + | chr7.2:12913752-12913771 | MS.gene035194:intron | 30.0% | |
| CACAACATCAAAACCAAAAA+CGG | - | chr7.2:12913804-12913823 | None:intergenic | 30.0% | |
| TCAGTATTAAAATTGGTTGG+AGG | + | chr7.2:12913747-12913766 | MS.gene035194:intron | 30.0% | |
| TTACCTTTCATTTCTCCTTT+GGG | - | chr7.2:12913469-12913488 | None:intergenic | 30.0% | |
| TTTACCTTTCATTTCTCCTT+TGG | - | chr7.2:12913470-12913489 | None:intergenic | 30.0% | |
| ! | TTATTAAAACGCGCTTTTGT+AGG | - | chr7.2:12913002-12913021 | None:intergenic | 30.0% |
| !! | CGATTTTCATTTTGTTTCTC+AGG | + | chr7.2:12913023-12913042 | MS.gene035194:intron | 30.0% |
| !! | TATGTTTTTATCGCCGTTTT+TGG | + | chr7.2:12913788-12913807 | MS.gene035194:intron | 30.0% |
| !! | TCGTGTTGATTGTAATTGTA+GGG | + | chr7.2:12913848-12913867 | MS.gene035194:intron | 30.0% |
| !! | TTCGTGTTGATTGTAATTGT+AGG | + | chr7.2:12913847-12913866 | MS.gene035194:intron | 30.0% |
| AATCCCAAAGGAGAAATGAA+AGG | + | chr7.2:12913463-12913482 | MS.gene035194:CDS | 35.0% | |
| ACTGCTGTGTCTTCAATAAT+TGG | + | chr7.2:12913654-12913673 | MS.gene035194:intron | 35.0% | |
| ATGATAATATCGACGTAGGT+GGG | + | chr7.2:12913539-12913558 | MS.gene035194:intron | 35.0% | |
| TTAAAATTGGTTGGAGGATC+GGG | + | chr7.2:12913753-12913772 | MS.gene035194:intron | 35.0% | |
| !! | ATTTCCGTCAAAGGTATCAA+AGG | + | chr7.2:12913149-12913168 | MS.gene035194:CDS | 35.0% |
| !! | GGTGTTATTGTTAATCCCAA+AGG | + | chr7.2:12913451-12913470 | MS.gene035194:CDS | 35.0% |
| !! | GGTTTTGATGTTGTGCTTTT+TGG | + | chr7.2:12913809-12913828 | MS.gene035194:intron | 35.0% |
| AACAAGTTCAGGATGTCACT+GGG | + | chr7.2:12913065-12913084 | MS.gene035194:CDS | 40.0% | |
| ACATGAAAACACCGTCCTTT+CGG | - | chr7.2:12913301-12913320 | None:intergenic | 40.0% | |
| CACGATGATAATATCGACGT+AGG | + | chr7.2:12913535-12913554 | MS.gene035194:intron | 40.0% | |
| CCTTCCTTTGATACCTTTGA+CGG | - | chr7.2:12913156-12913175 | None:intergenic | 40.0% | |
| CTACGTCGATATTATCATCG+TGG | - | chr7.2:12913537-12913556 | None:intergenic | 40.0% | |
| CTCTACATCATTTCCGTCAA+AGG | + | chr7.2:12913140-12913159 | MS.gene035194:CDS | 40.0% | |
| GATGATAATATCGACGTAGG+TGG | + | chr7.2:12913538-12913557 | MS.gene035194:intron | 40.0% | |
| GATGTAGAGATTCTTAGCTC+CGG | - | chr7.2:12913129-12913148 | None:intergenic | 40.0% | |
| TAACAAGTTCAGGATGTCAC+TGG | + | chr7.2:12913064-12913083 | MS.gene035194:CDS | 40.0% | |
| TTGTATTGTGCAGACAATGC+TGG | + | chr7.2:12913430-12913449 | MS.gene035194:intron | 40.0% | |
| ! | GGTGTTTTCATGTACTTCGA+AGG | + | chr7.2:12913308-12913327 | MS.gene035194:CDS | 40.0% |
| !! | ATTCTTAGCTCCGGTGTTAT+CGG | - | chr7.2:12913120-12913139 | None:intergenic | 40.0% |
| !! | TCATTTTGTTTCTCAGGTCG+CGG | + | chr7.2:12913029-12913048 | MS.gene035194:intron | 40.0% |
| ATCAGGCTTACCCTTCTTCA+CGG | - | chr7.2:12913225-12913244 | None:intergenic | 45.0% | |
| ATTGTAGGGTCTGCTATCAC+TGG | + | chr7.2:12913862-12913881 | MS.gene035194:intron | 45.0% | |
| TAAGCCTGATCTCCGTAAGA+AGG | + | chr7.2:12913235-12913254 | MS.gene035194:CDS | 45.0% | |
| TCTGCTATCACTGGTCCAAT+CGG | + | chr7.2:12913871-12913890 | MS.gene035194:CDS | 45.0% | |
| TTAGCAGCACTTGCAATCCT+AGG | - | chr7.2:12913919-12913938 | None:intergenic | 45.0% | |
| !! | CCGTCAAAGGTATCAAAGGA+AGG | + | chr7.2:12913153-12913172 | MS.gene035194:CDS | 45.0% |
| AGCACCTTCTTACGGAGATC+AGG | - | chr7.2:12913242-12913261 | None:intergenic | 50.0% | |
| ATGTCACCAACGCAAGCAGA+AGG | - | chr7.2:12913191-12913210 | None:intergenic | 50.0% | |
| CAACGCAAGCAGAAGGCAAA+CGG | - | chr7.2:12913184-12913203 | None:intergenic | 50.0% | |
| CTGCTATCACTGGTCCAATC+GGG | + | chr7.2:12913872-12913891 | MS.gene035194:CDS | 50.0% | |
| TATCACTGGTCCAATCGGGA+AGG | + | chr7.2:12913876-12913895 | MS.gene035194:CDS | 50.0% | |
| TTTACGCTGGCGAACGATGA+CGG | - | chr7.2:12913270-12913289 | None:intergenic | 50.0% | |
| ! | AGTGTGCTGATCTATGGCCT+AGG | + | chr7.2:12913899-12913918 | MS.gene035194:CDS | 50.0% |
| ! | GGAAGGAGTGTGCTGATCTA+TGG | + | chr7.2:12913893-12913912 | MS.gene035194:CDS | 50.0% |
| ! | GTGAATTGCGCCGATAACAC+CGG | + | chr7.2:12913107-12913126 | MS.gene035194:CDS | 50.0% |
| !! | CATCCTGAACTTGTTACCCG+CGG | - | chr7.2:12913060-12913079 | None:intergenic | 50.0% |
| !! | TTCTGCTTGCGTTGGTGACA+TGG | + | chr7.2:12913190-12913209 | MS.gene035194:CDS | 50.0% |
| !! | TTGCGTTGGTGACATGGTGA+TGG | + | chr7.2:12913196-12913215 | MS.gene035194:CDS | 50.0% |
| !! | TTTTGTTTCTCAGGTCGCGG+AGG | + | chr7.2:12913032-12913051 | MS.gene035194:intron | 50.0% |
| AGGCTTACCCTTCTTCACGG+TGG | - | chr7.2:12913222-12913241 | None:intergenic | 55.0% | |
| CGTTTGCCTTCTGCTTGCGT+TGG | + | chr7.2:12913182-12913201 | MS.gene035194:CDS | 55.0% | |
| GATCCGCGGGTAACAAGTTC+AGG | + | chr7.2:12913054-12913073 | MS.gene035194:CDS | 55.0% | |
| GATGTCACTGGGTCTACCAG+TGG | + | chr7.2:12913076-12913095 | MS.gene035194:CDS | 55.0% | |
| GTGATGGCCACCGTGAAGAA+GGG | + | chr7.2:12913212-12913231 | MS.gene035194:CDS | 55.0% | |
| TCAGCACACTCCTTCCCGAT+TGG | - | chr7.2:12913889-12913908 | None:intergenic | 55.0% | |
| TCGTTCGCCAGCGTAAACCA+TGG | + | chr7.2:12913273-12913292 | MS.gene035194:CDS | 55.0% | |
| ! | AAACCATGGCGCCGAAAGGA+CGG | + | chr7.2:12913287-12913306 | MS.gene035194:CDS | 55.0% |
| !! | CGGCAGGAAGCACCTTCTTA+CGG | - | chr7.2:12913250-12913269 | None:intergenic | 55.0% |
| GTCACTGGGTCTACCAGTGG+CGG | + | chr7.2:12913079-12913098 | MS.gene035194:CDS | 60.0% | |
| TTCGGCGCCATGGTTTACGC+TGG | - | chr7.2:12913283-12913302 | None:intergenic | 60.0% | |
| ! | GCGTAAACCATGGCGCCGAA+AGG | + | chr7.2:12913283-12913302 | MS.gene035194:CDS | 60.0% |
| ! | GGTGATGGCCACCGTGAAGA+AGG | + | chr7.2:12913211-12913230 | MS.gene035194:CDS | 60.0% |
| ACACCGTCCTTTCGGCGCCA+TGG | - | chr7.2:12913293-12913312 | None:intergenic | 65.0% | |
| CAATTCACCGTCGCCGCCAC+TGG | - | chr7.2:12913095-12913114 | None:intergenic | 65.0% | |
| CTCAGGTCGCGGAGGATCCG+CGG | + | chr7.2:12913040-12913059 | MS.gene035194:intron | 70.0% | |
| GGGTCTACCAGTGGCGGCGA+CGG | + | chr7.2:12913085-12913104 | MS.gene035194:CDS | 70.0% | |
| TCAGGTCGCGGAGGATCCGC+GGG | + | chr7.2:12913041-12913060 | MS.gene035194:intron | 70.0% | |
| ! | CGCTGGCGAACGATGACGGC+AGG | - | chr7.2:12913266-12913285 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 12912936 | 12913951 | 12912936 | ID=MS.gene035194 |
| chr7.2 | mRNA | 12912936 | 12913951 | 12912936 | ID=MS.gene035194.t1;Parent=MS.gene035194 |
| chr7.2 | exon | 12912936 | 12912948 | 12912936 | ID=MS.gene035194.t1.exon1;Parent=MS.gene035194.t1 |
| chr7.2 | CDS | 12912936 | 12912948 | 12912936 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
| chr7.2 | exon | 12913045 | 12913329 | 12913045 | ID=MS.gene035194.t1.exon2;Parent=MS.gene035194.t1 |
| chr7.2 | CDS | 12913045 | 12913329 | 12913045 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
| chr7.2 | exon | 12913443 | 12913484 | 12913443 | ID=MS.gene035194.t1.exon3;Parent=MS.gene035194.t1 |
| chr7.2 | CDS | 12913443 | 12913484 | 12913443 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
| chr7.2 | exon | 12913869 | 12913951 | 12913869 | ID=MS.gene035194.t1.exon4;Parent=MS.gene035194.t1 |
| chr7.2 | CDS | 12913869 | 12913951 | 12913869 | ID=cds.MS.gene035194.t1;Parent=MS.gene035194.t1 |
| Gene Sequence |
| Protein sequence |