Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01334.t1 | XP_013462471.1 | 84 | 443 | 21 | 2 | 1 | 425 | 1 | 411 | 6.60E-207 | 729.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01334.t1 | Q9M0Y6 | 61.0 | 374 | 114 | 3 | 69 | 423 | 34 | 394 | 6.4e-126 | 452.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01334.t1 | A0A072V4C7 | 84.0 | 443 | 21 | 2 | 1 | 425 | 1 | 411 | 4.7e-207 | 729.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene36509 | MS.gene01334 | PPI |
MS.gene023190 | MS.gene01334 | PPI |
MS.gene01334 | MS.gene35178 | PPI |
MS.gene028282 | MS.gene01334 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01334.t1 | MTR_2g011680 | 83.973 | 443 | 21 | 2 | 1 | 425 | 1 | 411 | 0.0 | 751 |
MS.gene01334.t1 | MTR_2g012510 | 31.980 | 394 | 196 | 16 | 76 | 419 | 86 | 457 | 4.85e-33 | 130 |
MS.gene01334.t1 | MTR_8g464260 | 30.769 | 390 | 201 | 18 | 77 | 419 | 2 | 369 | 4.97e-32 | 125 |
MS.gene01334.t1 | MTR_4g094672 | 29.963 | 267 | 144 | 9 | 119 | 371 | 2 | 239 | 4.39e-24 | 101 |
MS.gene01334.t1 | MTR_4g090525 | 28.676 | 408 | 220 | 17 | 64 | 419 | 53 | 441 | 3.07e-22 | 99.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01334.t1 | AT4G05090 | 60.963 | 374 | 114 | 3 | 69 | 423 | 34 | 394 | 1.21e-156 | 448 |
MS.gene01334.t1 | AT4G05090 | 54.813 | 374 | 105 | 4 | 69 | 423 | 34 | 362 | 2.03e-136 | 395 |
MS.gene01334.t1 | AT5G54390 | 33.422 | 377 | 183 | 16 | 84 | 416 | 9 | 361 | 4.63e-38 | 142 |
MS.gene01334.t1 | AT5G63980 | 32.827 | 329 | 184 | 11 | 101 | 419 | 39 | 340 | 7.72e-37 | 138 |
MS.gene01334.t1 | AT5G63990 | 32.229 | 332 | 183 | 13 | 102 | 422 | 40 | 340 | 1.92e-36 | 137 |
MS.gene01334.t1 | AT5G64000 | 31.165 | 369 | 195 | 11 | 81 | 422 | 3 | 339 | 2.48e-36 | 136 |
MS.gene01334.t1 | AT5G09290 | 29.380 | 371 | 191 | 13 | 81 | 422 | 3 | 331 | 1.18e-31 | 124 |
MS.gene01334.t1 | AT5G64000 | 31.173 | 324 | 180 | 10 | 110 | 422 | 5 | 296 | 3.63e-31 | 121 |
MS.gene01334.t1 | AT5G63990 | 32.384 | 281 | 152 | 12 | 102 | 371 | 40 | 293 | 1.74e-29 | 117 |
Find 113 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAGTAGTGATGAGATTTC+TGG | 0.198844 | 2.2:-70186432 | None:intergenic |
GAGCAACCAAATTGTTATTT+TGG | 0.203955 | 2.2:+70191479 | MS.gene01334:CDS |
GTCCACACACCAGCTGATTT+GGG | 0.241577 | 2.2:-70191330 | None:intergenic |
ATTCATTCATTCATTCCTTT+AGG | 0.247203 | 2.2:+70186468 | MS.gene01334:CDS |
CTTCCATTTCCTCAGCAAAA+TGG | 0.265453 | 2.2:+70186497 | MS.gene01334:CDS |
ATGCTGCCAAAATAACAATT+TGG | 0.274202 | 2.2:-70191485 | None:intergenic |
GGTCCACACACCAGCTGATT+TGG | 0.282185 | 2.2:-70191331 | None:intergenic |
TTCATTCATTCATTCCTTTA+GGG | 0.289911 | 2.2:+70186469 | MS.gene01334:CDS |
ATGAATGAATGAATGAAAAT+TGG | 0.292148 | 2.2:-70186455 | None:intergenic |
TGCTTGCAGTTTATGTGTTC+AGG | 0.293226 | 2.2:+70186565 | MS.gene01334:CDS |
AGAGATTGTAATTGGTGTTA+TGG | 0.297902 | 2.2:+70191167 | MS.gene01334:CDS |
GATCAAAGCCGGCCACATAT+TGG | 0.305709 | 2.2:+70187771 | MS.gene01334:CDS |
GATTCCCATGATTGACTATC+TGG | 0.306948 | 2.2:-70191405 | None:intergenic |
ATCATCATAATTCCTGATTC+AGG | 0.332419 | 2.2:-70191261 | None:intergenic |
TTCCCTGTCCTCTTCCATCT+TGG | 0.333690 | 2.2:-70191232 | None:intergenic |
GACAAGTCTTCTTGCCAATT+GGG | 0.335171 | 2.2:-70191195 | None:intergenic |
TGTGGCAGACTTTGGTGTTC+AGG | 0.351262 | 2.2:+70187086 | MS.gene01334:CDS |
GTTGAAGGAGAGATTGTAAT+TGG | 0.352089 | 2.2:+70191159 | MS.gene01334:CDS |
GTTCAGGCTCTCATAAGTTT+AGG | 0.363263 | 2.2:+70187102 | MS.gene01334:CDS |
GAGATTGTAATTGGTGTTAT+GGG | 0.367377 | 2.2:+70191168 | MS.gene01334:CDS |
AGACAAGTCTTCTTGCCAAT+TGG | 0.375334 | 2.2:-70191196 | None:intergenic |
TCGGCCACCAATGGGATAGA+AGG | 0.389586 | 2.2:-70187599 | None:intergenic |
TGGTTGCTCCCTACATCATT+TGG | 0.394740 | 2.2:-70191465 | None:intergenic |
ATCAAAGCCGGCCACATATT+GGG | 0.397697 | 2.2:+70187772 | MS.gene01334:CDS |
AATCCACGTGTGCCATCAAT+TGG | 0.405595 | 2.2:-70190587 | None:intergenic |
CGGAGGATCATATTCCCTTC+AGG | 0.409595 | 2.2:+70193913 | MS.gene01334:CDS |
AGGGAAGCTCTTCCTGAATC+AGG | 0.418183 | 2.2:+70191249 | MS.gene01334:CDS |
ATTATGATGATTGCTCATAA+AGG | 0.420141 | 2.2:+70191273 | MS.gene01334:CDS |
GCATTAAATATAGAAGATAA+TGG | 0.431371 | 2.2:-70191432 | None:intergenic |
TGCCGCCGCCGTCAGAAAAT+CGG | 0.433921 | 2.2:-70186331 | None:intergenic |
GGTTTGGCTCTCATGGTTGA+AGG | 0.441562 | 2.2:+70191144 | MS.gene01334:CDS |
TTCTATCCCATTGGTGGCCG+AGG | 0.445885 | 2.2:+70187601 | MS.gene01334:CDS |
TTTCTGACGGCGGCGGCACT+CGG | 0.448923 | 2.2:+70186336 | MS.gene01334:CDS |
CCAAAGTCTGCCACAGTCAC+TGG | 0.451305 | 2.2:-70187078 | None:intergenic |
CTTGCGGTCAAGAAACTTAG+TGG | 0.452261 | 2.2:+70187637 | MS.gene01334:CDS |
GGACCAGATGTGTTGTTGAT+AGG | 0.452319 | 2.2:+70191349 | MS.gene01334:CDS |
CCAGTGACTGTGGCAGACTT+TGG | 0.453128 | 2.2:+70187078 | MS.gene01334:CDS |
GTTGTTCCCTTCTATCCCAT+TGG | 0.458469 | 2.2:+70187592 | MS.gene01334:CDS |
GTCCTCTTCCATCTTGGCAG+AGG | 0.466661 | 2.2:-70191226 | None:intergenic |
ATTTGAAGAAGAATGAATGA+TGG | 0.470084 | 2.2:-70186403 | None:intergenic |
ATAGGTGGGTTTGGCTCTCA+TGG | 0.470703 | 2.2:+70191137 | MS.gene01334:intron |
TAGTTTATGCAAGTATTTGA+TGG | 0.470854 | 2.2:+70192438 | MS.gene01334:intron |
CAGGTGCTTGATCCAATTGA+TGG | 0.473698 | 2.2:+70190575 | MS.gene01334:intron |
AAGTATTTGATGGTGGCGTC+AGG | 0.479442 | 2.2:+70192448 | MS.gene01334:CDS |
GAACCTTACGTTGAAGCGTC+GGG | 0.482739 | 2.2:-70186375 | None:intergenic |
AAATGGAAGGTTGGCCCTAA+AGG | 0.484603 | 2.2:-70186483 | None:intergenic |
ATGATTGCTCATAAAGGCTA+TGG | 0.493868 | 2.2:+70191279 | MS.gene01334:CDS |
GAATCCTCCTCGGCCACCAA+TGG | 0.495135 | 2.2:-70187608 | None:intergenic |
AAACCTATCAACAACACATC+TGG | 0.496603 | 2.2:-70191352 | None:intergenic |
CTCATAAAGGCTATGGAACA+TGG | 0.499190 | 2.2:+70191286 | MS.gene01334:CDS |
GTACTCAAAGCAATTGATAG+AGG | 0.500417 | 2.2:+70187725 | MS.gene01334:CDS |
CTGCCAAGATGGAAGAGGAC+AGG | 0.501643 | 2.2:+70191229 | MS.gene01334:CDS |
ACAAGCAATCCAAATGATGT+AGG | 0.502991 | 2.2:+70191456 | MS.gene01334:CDS |
GTTCCCTTCTATCCCATTGG+TGG | 0.505293 | 2.2:+70187595 | MS.gene01334:CDS |
GTGTTATGGGCTGCCCCAAT+TGG | 0.507718 | 2.2:+70191181 | MS.gene01334:CDS |
CTGAAGGGAATATGATCCTC+CGG | 0.507728 | 2.2:-70193912 | None:intergenic |
GTATTCCAGATAGTCAATCA+TGG | 0.509269 | 2.2:+70191400 | MS.gene01334:CDS |
AATCCTCCTCGGCCACCAAT+GGG | 0.509660 | 2.2:-70187607 | None:intergenic |
CTGCTGAAGCTAGCTCCACT+TGG | 0.521128 | 2.2:+70187681 | MS.gene01334:CDS |
ACGCAGAGCTCCGATGGCAT+TGG | 0.523733 | 2.2:+70186271 | None:intergenic |
AGCTCCGATGGCATTGGCGA+TGG | 0.525036 | 2.2:+70186277 | None:intergenic |
AGGAGGATTCTGCTTTCTTG+CGG | 0.529637 | 2.2:+70187621 | MS.gene01334:CDS |
CAGGCTTGGGACCATGCTGT+TGG | 0.529955 | 2.2:+70192590 | MS.gene01334:intron |
TTGCTGAGGAAATGGAAGGT+TGG | 0.531220 | 2.2:-70186492 | None:intergenic |
ATCAGGTAACTGACTGGGAA+GGG | 0.532894 | 2.2:+70193857 | MS.gene01334:intron |
CATTCATGAGGCAGGTGGAA+AGG | 0.553260 | 2.2:+70192622 | MS.gene01334:CDS |
GGGAATATGATCCTCCGGCT+AGG | 0.556143 | 2.2:-70193907 | None:intergenic |
TATTCCAGATAGTCAATCAT+GGG | 0.557933 | 2.2:+70191401 | MS.gene01334:CDS |
AATTTGATCAGGTAACTGAC+TGG | 0.558262 | 2.2:+70193851 | MS.gene01334:intron |
TAATATGCCCACCCAATATG+TGG | 0.559681 | 2.2:-70187783 | None:intergenic |
AATAGCAACCCCAAATCAGC+TGG | 0.559980 | 2.2:+70191321 | MS.gene01334:CDS |
TCCACACACCAGCTGATTTG+GGG | 0.562347 | 2.2:-70191329 | None:intergenic |
ACACCCGACGCTTCAACGTA+AGG | 0.564089 | 2.2:+70186372 | MS.gene01334:CDS |
TACTCAAAGCAATTGATAGA+GGG | 0.567364 | 2.2:+70187726 | MS.gene01334:CDS |
AAAAGAGACGACTACTATCA+AGG | 0.569178 | 2.2:+70192498 | MS.gene01334:CDS |
AGCAGTGTGAACAACATCAA+TGG | 0.573505 | 2.2:-70186546 | None:intergenic |
CAAGCAATCCAAATGATGTA+GGG | 0.573943 | 2.2:+70191457 | MS.gene01334:CDS |
ATATCCATCGCCAATGCCAT+CGG | 0.574061 | 2.2:-70186281 | None:intergenic |
ATCCTCTGCCAAGATGGAAG+AGG | 0.582112 | 2.2:+70191224 | MS.gene01334:CDS |
TGCCAAGATGGAAGAGGACA+GGG | 0.587008 | 2.2:+70191230 | MS.gene01334:CDS |
ATGATATGCATTCATGAGGC+AGG | 0.589800 | 2.2:+70192614 | MS.gene01334:CDS |
AGAACCTTACGTTGAAGCGT+CGG | 0.590075 | 2.2:-70186376 | None:intergenic |
ATGCCCACCCAATATGTGGC+CGG | 0.590199 | 2.2:-70187779 | None:intergenic |
ACAAGTCTTCTTGCCAATTG+GGG | 0.592329 | 2.2:-70191194 | None:intergenic |
TATCCCATTGGTGGCCGAGG+AGG | 0.593835 | 2.2:+70187604 | MS.gene01334:CDS |
ACCCCAAATCAGCTGGTGTG+TGG | 0.594473 | 2.2:+70191328 | MS.gene01334:CDS |
CGGCCACCAATGGGATAGAA+GGG | 0.596026 | 2.2:-70187598 | None:intergenic |
TTGCGGTCAAGAAACTTAGT+GGG | 0.597895 | 2.2:+70187638 | MS.gene01334:CDS |
TTTATGCAAGTATTTGATGG+TGG | 0.597938 | 2.2:+70192441 | MS.gene01334:CDS |
GGTGGCGTCCTTGTTACTAA+CGG | 0.601548 | 2.2:+70193934 | MS.gene01334:CDS |
GTAACAAGGACGCCACCTGA+AGG | 0.602966 | 2.2:-70193928 | None:intergenic |
GATCCAATTGATGGCACACG+TGG | 0.605621 | 2.2:+70190584 | MS.gene01334:CDS |
AGATAACAAAGCGTTATATG+TGG | 0.605754 | 2.2:+70190616 | MS.gene01334:CDS |
GATCAGGTAACTGACTGGGA+AGG | 0.607305 | 2.2:+70193856 | MS.gene01334:intron |
TAACAAGGACGCCACCTGAA+GGG | 0.611253 | 2.2:-70193927 | None:intergenic |
GTAAATTGCCGTTAGTAACA+AGG | 0.612669 | 2.2:-70193942 | None:intergenic |
TTGCCACAGATCAACCTAGC+CGG | 0.615737 | 2.2:+70193893 | MS.gene01334:CDS |
TGCATATCATGCCAACAGCA+TGG | 0.616442 | 2.2:-70192601 | None:intergenic |
ATTTGATCAGGTAACTGACT+GGG | 0.622347 | 2.2:+70193852 | MS.gene01334:intron |
CAAGAAAGCAGAATCCTCCT+CGG | 0.629801 | 2.2:-70187618 | None:intergenic |
TGTTGTTGATAGGTTTGACA+TGG | 0.638659 | 2.2:+70191359 | MS.gene01334:CDS |
TGATCAGACTCCAGTGACTG+TGG | 0.643293 | 2.2:+70187068 | MS.gene01334:intron |
CTCAAAGCAATTGATAGAGG+GGG | 0.649113 | 2.2:+70187728 | MS.gene01334:CDS |
AGGATCATATTCCCTTCAGG+TGG | 0.653889 | 2.2:+70193916 | MS.gene01334:CDS |
ATATGCATTCATGAGGCAGG+TGG | 0.655145 | 2.2:+70192617 | MS.gene01334:CDS |
CGGTGGAGAGATGAGAAGAA+CGG | 0.656261 | 2.2:-70186307 | None:intergenic |
ACTCAAAGCAATTGATAGAG+GGG | 0.668266 | 2.2:+70187727 | MS.gene01334:CDS |
CCACAGATCAACCTAGCCGG+AGG | 0.673600 | 2.2:+70193896 | MS.gene01334:CDS |
CCTCCGGCTAGGTTGATCTG+TGG | 0.683161 | 2.2:-70193896 | None:intergenic |
GCCGCCGTCAGAAAATCGGA+CGG | 0.685895 | 2.2:-70186327 | None:intergenic |
GCCGTCAGAAAATCGGACGG+TGG | 0.690905 | 2.2:-70186324 | None:intergenic |
TGGAGAGATGAGAAGAACGG+AGG | 0.713156 | 2.2:-70186304 | None:intergenic |
TGGCATGATATGCATTCATG+AGG | 0.720942 | 2.2:+70192610 | MS.gene01334:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 70186284 | 70194008 | 70186284 | ID=MS.gene01334 |
chr2.2 | mRNA | 70186284 | 70194008 | 70186284 | ID=MS.gene01334.t1;Parent=MS.gene01334 |
chr2.2 | exon | 70186284 | 70186586 | 70186284 | ID=MS.gene01334.t1.exon1;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70186284 | 70186586 | 70186284 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70187075 | 70187123 | 70187075 | ID=MS.gene01334.t1.exon2;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70187075 | 70187123 | 70187075 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70187582 | 70187793 | 70187582 | ID=MS.gene01334.t1.exon3;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70187582 | 70187793 | 70187582 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70190578 | 70190637 | 70190578 | ID=MS.gene01334.t1.exon4;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70190578 | 70190637 | 70190578 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70191141 | 70191517 | 70191141 | ID=MS.gene01334.t1.exon5;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70191141 | 70191517 | 70191141 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70192441 | 70192519 | 70192441 | ID=MS.gene01334.t1.exon6;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70192441 | 70192519 | 70192441 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70192593 | 70192643 | 70192593 | ID=MS.gene01334.t1.exon7;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70192593 | 70192643 | 70192593 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
chr2.2 | exon | 70193862 | 70194008 | 70193862 | ID=MS.gene01334.t1.exon8;Parent=MS.gene01334.t1 |
chr2.2 | CDS | 70193862 | 70194008 | 70193862 | ID=cds.MS.gene01334.t1;Parent=MS.gene01334.t1 |
Gene Sequence |
Protein sequence |