Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36509.t1 | XP_004504666.1 | 93.4 | 347 | 23 | 0 | 4 | 350 | 54 | 400 | 7.60E-177 | 629.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36509.t1 | Q42546 | 71.0 | 352 | 98 | 3 | 3 | 350 | 2 | 353 | 1.9e-131 | 470.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36509.t1 | A0A1S2YGY7 | 93.4 | 347 | 23 | 0 | 4 | 350 | 54 | 400 | 5.5e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36509 | MS.gene02315 | PPI |
| MS.gene36509 | MS.gene047523 | PPI |
| MS.gene36509 | MS.gene01334 | PPI |
| MS.gene070607 | MS.gene36509 | PPI |
| MS.gene36509 | MS.gene29934 | PPI |
| MS.gene36509 | MS.gene01364 | PPI |
| MS.gene36509 | MS.gene01773 | PPI |
| MS.gene002387 | MS.gene36509 | PPI |
| MS.gene36509 | MS.gene046100 | PPI |
| MS.gene36509 | MS.gene01744 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36509.t1 | MTR_4g094672 | 94.167 | 240 | 14 | 0 | 57 | 296 | 1 | 240 | 2.20e-169 | 472 |
| MS.gene36509.t1 | MTR_8g464260 | 42.276 | 369 | 185 | 6 | 4 | 344 | 6 | 374 | 7.33e-93 | 282 |
| MS.gene36509.t1 | MTR_2g012510 | 44.068 | 354 | 164 | 7 | 4 | 325 | 91 | 442 | 3.98e-91 | 280 |
| MS.gene36509.t1 | MTR_4g090525 | 37.429 | 350 | 186 | 8 | 4 | 325 | 82 | 426 | 1.22e-62 | 206 |
| MS.gene36509.t1 | MTR_2g011680 | 32.708 | 373 | 208 | 12 | 2 | 342 | 47 | 408 | 1.18e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36509.t1 | AT5G63980 | 76.989 | 352 | 77 | 3 | 3 | 350 | 2 | 353 | 0.0 | 533 |
| MS.gene36509.t1 | AT5G63990 | 62.209 | 344 | 125 | 3 | 3 | 344 | 2 | 342 | 7.63e-151 | 429 |
| MS.gene36509.t1 | AT5G64000 | 63.478 | 345 | 122 | 2 | 3 | 346 | 2 | 343 | 2.21e-149 | 425 |
| MS.gene36509.t1 | AT5G09290 | 59.710 | 345 | 125 | 4 | 4 | 346 | 3 | 335 | 9.81e-147 | 418 |
| MS.gene36509.t1 | AT5G63990 | 61.149 | 296 | 110 | 3 | 3 | 296 | 2 | 294 | 7.68e-125 | 360 |
| MS.gene36509.t1 | AT5G64000 | 61.538 | 299 | 111 | 2 | 49 | 346 | 5 | 300 | 8.29e-124 | 358 |
| MS.gene36509.t1 | AT5G54390 | 42.192 | 365 | 184 | 10 | 3 | 342 | 5 | 367 | 5.17e-85 | 262 |
| MS.gene36509.t1 | AT4G05090 | 32.967 | 364 | 201 | 12 | 2 | 339 | 44 | 390 | 2.41e-43 | 154 |
| MS.gene36509.t1 | AT4G05090 | 29.396 | 364 | 182 | 11 | 2 | 339 | 44 | 358 | 7.19e-34 | 128 |
Find 76 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAACTCTATTAGGATTC+AGG | 0.211302 | 4.1:+18066809 | MS.gene36509:intron |
| CGTTGGTCGACACTGGGTTT+TGG | 0.242248 | 4.1:+18066985 | MS.gene36509:CDS |
| TGAGAAGTCCAAAGGGTTTC+CGG | 0.253320 | 4.1:-18069443 | None:intergenic |
| AAGAAGAATGCTGCTGATTA+TGG | 0.294931 | 4.1:-18067229 | None:intergenic |
| TCCTCGGCTACTAATGAAAA+TGG | 0.299974 | 4.1:-18066716 | None:intergenic |
| CCTGTCACTGTTGCTGATTA+TGG | 0.316799 | 4.1:+18066457 | MS.gene36509:CDS |
| ATGGTTGCCAGTGGAAGATT+TGG | 0.329719 | 4.1:-18067203 | None:intergenic |
| AAAGTGAAGGCATCAAGTTC+TGG | 0.341094 | 4.1:-18069510 | None:intergenic |
| TACCCTTTAGTACCATCTAT+TGG | 0.348231 | 4.1:-18067010 | None:intergenic |
| AAGTTTCTTGATGTTGATAC+TGG | 0.362764 | 4.1:+18069472 | MS.gene36509:CDS |
| GTGGTTCCGTTGGTCGACAC+TGG | 0.374689 | 4.1:+18066978 | MS.gene36509:CDS |
| GTTGACAGGTTCACAGGTCT+TGG | 0.380007 | 4.1:+18066658 | MS.gene36509:intron |
| GAAAGTTGTATTGGGTGTAT+TGG | 0.382393 | 4.1:+18067175 | MS.gene36509:CDS |
| AACAACAGATGATGTGCTTA+AGG | 0.386211 | 4.1:+18066931 | MS.gene36509:CDS |
| ATATATAGCCCCGTCTCCTC+TGG | 0.394658 | 4.1:-18067691 | None:intergenic |
| ATATGTTCCATTGCCAACTT+TGG | 0.422006 | 4.1:-18067279 | None:intergenic |
| AGATGCTGCCGGAAACCCTT+TGG | 0.422474 | 4.1:+18069435 | MS.gene36509:CDS |
| GAGCTAATGCTATGGCATAT+TGG | 0.422687 | 4.1:-18067139 | None:intergenic |
| CATTCTTCTTCTAATGAAGT+TGG | 0.427695 | 4.1:+18067242 | MS.gene36509:CDS |
| TCTCGCTGCTCGTCTTTGCC+AGG | 0.427962 | 4.1:+18066287 | MS.gene36509:CDS |
| AGATCAAGGGAAAGTTGTAT+TGG | 0.434380 | 4.1:+18067166 | MS.gene36509:CDS |
| CATTTGGTTGACAGGTTCAC+AGG | 0.441171 | 4.1:+18066652 | MS.gene36509:intron |
| AACCCTTTGGACTTCTCAAA+AGG | 0.444660 | 4.1:+18069448 | MS.gene36509:CDS |
| GTGCTTAAGGCTATTGATAA+TGG | 0.450269 | 4.1:+18066944 | MS.gene36509:CDS |
| GATCCAATAGATGGTACTAA+AGG | 0.456630 | 4.1:+18067007 | MS.gene36509:CDS |
| GGATGGTTCTACACAAACTA+AGG | 0.458730 | 4.1:+18067313 | MS.gene36509:CDS |
| TTAAACTCTATTAGGATTCA+GGG | 0.465154 | 4.1:+18066810 | MS.gene36509:intron |
| ATGCTGCTGATTATGGCTAA+TGG | 0.472819 | 4.1:-18067222 | None:intergenic |
| TTCTTTGCCAAAGTTGGCAA+TGG | 0.475551 | 4.1:+18067272 | MS.gene36509:CDS |
| TGCCGTTATAGGTTTGTAAG+AGG | 0.478049 | 4.1:+18067113 | MS.gene36509:intron |
| GCATTAGCTCTGCTAGATCA+AGG | 0.483237 | 4.1:+18067152 | MS.gene36509:CDS |
| GATCAAGGGAAAGTTGTATT+GGG | 0.494154 | 4.1:+18067167 | MS.gene36509:CDS |
| GAGCTCTGTCCAGAGGAGAC+GGG | 0.503558 | 4.1:+18067682 | MS.gene36509:CDS |
| ATCCAATAGATGGTACTAAA+GGG | 0.503600 | 4.1:+18067008 | MS.gene36509:CDS |
| GCCTGGCTGTCAATTCTGAC+TGG | 0.506783 | 4.1:-18067651 | None:intergenic |
| TGGTTCCGTTGGTCGACACT+GGG | 0.508761 | 4.1:+18066979 | MS.gene36509:CDS |
| GGCTTGTCCAAATCTTCCAC+TGG | 0.511392 | 4.1:+18067196 | MS.gene36509:CDS |
| ATTGACAGCCAGGCTAAATA+CGG | 0.513091 | 4.1:+18067660 | MS.gene36509:CDS |
| TTTAGGGTTATTGACATGCC+TGG | 0.513177 | 4.1:-18066305 | None:intergenic |
| CCATAATCAGCAACAGTGAC+AGG | 0.514252 | 4.1:-18066457 | None:intergenic |
| GCAAAGACGAGCAGCGAGAG+TGG | 0.515405 | 4.1:-18066283 | None:intergenic |
| TGGAACATATATGCAAGCAT+TGG | 0.519175 | 4.1:+18067292 | MS.gene36509:CDS |
| AAGTTAAAATTTCACCTCCT+CGG | 0.521505 | 4.1:-18066732 | None:intergenic |
| TCTTCGTAAGGAAAGTGGTC+AGG | 0.526988 | 4.1:+18066835 | MS.gene36509:CDS |
| GGAGCTCTGTCCAGAGGAGA+CGG | 0.527942 | 4.1:+18067681 | MS.gene36509:CDS |
| CACTTCATGAACAGAAACTC+GGG | 0.528428 | 4.1:+18067616 | MS.gene36509:intron |
| ACTAATGAAAATGGTTGAGA+AGG | 0.531083 | 4.1:-18066707 | None:intergenic |
| AATGATACTCTCGCTAATGA+AGG | 0.531200 | 4.1:+18066887 | MS.gene36509:CDS |
| CGCTTCTTCTGGATTATCAA+CGG | 0.551847 | 4.1:-18067428 | None:intergenic |
| ACAGAGCTCCGTATTTAGCC+TGG | 0.556395 | 4.1:-18067668 | None:intergenic |
| AAAATATGGGATCATGCTGC+TGG | 0.556471 | 4.1:+18067744 | MS.gene36509:CDS |
| GGATTCAGGGGATCTTCGTA+AGG | 0.557759 | 4.1:+18066823 | MS.gene36509:intron |
| ACCAGTCAGAATTGACAGCC+AGG | 0.567872 | 4.1:+18067650 | MS.gene36509:CDS |
| TTAACTGCTCTCAAAAGTGA+AGG | 0.568631 | 4.1:-18069523 | None:intergenic |
| ATTGATAATGGTAAGTCTGA+AGG | 0.577108 | 4.1:+18066956 | MS.gene36509:CDS |
| TTTCACGGTATCCTTTGTTG+GGG | 0.579406 | 4.1:-18067722 | None:intergenic |
| ATCTAGCAGAGCTAATGCTA+TGG | 0.585894 | 4.1:-18067147 | None:intergenic |
| TTCAATGTCGTCTTACGACA+AGG | 0.587964 | 4.1:+18066236 | None:intergenic |
| GGTATTGTCTCAGATGCTGC+CGG | 0.589379 | 4.1:+18069424 | MS.gene36509:CDS |
| AAGTCTGAAGGTGGTTCCGT+TGG | 0.589934 | 4.1:+18066968 | MS.gene36509:CDS |
| TGGCTGTCAATTCTGACTGG+TGG | 0.591754 | 4.1:-18067648 | None:intergenic |
| ACATATATGCAAGCATTGGA+TGG | 0.592693 | 4.1:+18067296 | MS.gene36509:CDS |
| AGCTCTGTCCAGAGGAGACG+GGG | 0.593560 | 4.1:+18067683 | MS.gene36509:CDS |
| CATTAGCTCTGCTAGATCAA+GGG | 0.596216 | 4.1:+18067153 | MS.gene36509:CDS |
| GGGGATCTTCGTAAGGAAAG+TGG | 0.596819 | 4.1:+18066830 | MS.gene36509:CDS |
| TATTTGCGTTTCCCCAACAA+AGG | 0.603160 | 4.1:+18067711 | MS.gene36509:CDS |
| TCACTTCATGAACAGAAACT+CGG | 0.609428 | 4.1:+18067615 | MS.gene36509:intron |
| TAAACTCTATTAGGATTCAG+GGG | 0.620644 | 4.1:+18066811 | MS.gene36509:intron |
| CAAAACCCAGTGTCGACCAA+CGG | 0.625868 | 4.1:-18066984 | None:intergenic |
| GATAATGGTAAGTCTGAAGG+TGG | 0.649049 | 4.1:+18066959 | MS.gene36509:CDS |
| TGCGCTTGACGGATATCACA+AGG | 0.658698 | 4.1:-18069572 | None:intergenic |
| GCTGGCTGTATTGTTGTGAG+CGG | 0.674925 | 4.1:+18067762 | MS.gene36509:CDS |
| AAATACGGAGCTCTGTCCAG+AGG | 0.680232 | 4.1:+18067675 | MS.gene36509:CDS |
| TGTACTTCTACAGAAGCTGG+AGG | 0.680394 | 4.1:+18069403 | MS.gene36509:intron |
| TTATGGCTAATGGTTGCCAG+TGG | 0.725118 | 4.1:-18067212 | None:intergenic |
| ACTTCATGAACAGAAACTCG+GGG | 0.737878 | 4.1:+18067617 | MS.gene36509:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTTTACATAATTTA+AGG | + | chr4.1:18068621-18068640 | MS.gene36509:intron | 10.0% |
| !!! | TATTTTATTATTAATCCTTT+TGG | + | chr4.1:18066351-18066370 | MS.gene36509:intron | 10.0% |
| !! | AAGACAAAAATAATGATAAA+GGG | - | chr4.1:18067548-18067567 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAACAGTTAAAT+GGG | + | chr4.1:18068417-18068436 | MS.gene36509:intron | 15.0% |
| !! | TAAGACAAAAATAATGATAA+AGG | - | chr4.1:18067549-18067568 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTTAAGAGATTA+TGG | + | chr4.1:18066490-18066509 | MS.gene36509:intron | 15.0% |
| !!! | AATTGTTTTTAAGAGATTAT+GGG | + | chr4.1:18066491-18066510 | MS.gene36509:intron | 15.0% |
| !!! | ACTTTTTCAAATTATTTTTC+TGG | + | chr4.1:18068653-18068672 | MS.gene36509:intron | 15.0% |
| !!! | TAACTTTTTTACAAATTTCT+TGG | + | chr4.1:18066749-18066768 | MS.gene36509:intron | 15.0% |
| !!! | TTAATTGATCAAAACATTTT+TGG | - | chr4.1:18068577-18068596 | None:intergenic | 15.0% |
| !! | AAAGAAAATCAAAATCCAAA+AGG | - | chr4.1:18066369-18066388 | None:intergenic | 20.0% |
| !! | AAATTAAAGAAGAACCAATA+AGG | - | chr4.1:18068824-18068843 | None:intergenic | 20.0% |
| !! | AGACAAAAATAATGATAAAG+GGG | - | chr4.1:18067547-18067566 | None:intergenic | 20.0% |
| !! | CAAAGTATAGATTTATGTAT+GGG | + | chr4.1:18068468-18068487 | MS.gene36509:intron | 20.0% |
| !! | GGTAAAAAAAAACAGTTAAA+TGG | + | chr4.1:18068416-18068435 | MS.gene36509:intron | 20.0% |
| !! | TAAATATAGCAACATGTTAA+CGG | - | chr4.1:18069309-18069328 | None:intergenic | 20.0% |
| !! | TACATAAATCTATACTTTGA+TGG | - | chr4.1:18068467-18068486 | None:intergenic | 20.0% |
| !! | TATAAAGAAAATATGCCAAA+TGG | - | chr4.1:18068965-18068984 | None:intergenic | 20.0% |
| !! | TCAAAGTATAGATTTATGTA+TGG | + | chr4.1:18068467-18068486 | MS.gene36509:intron | 20.0% |
| !! | TTATAACTTATCAACAAAGA+AGG | - | chr4.1:18068758-18068777 | None:intergenic | 20.0% |
| !! | TTTAATCAAAAAGACATGAA+AGG | - | chr4.1:18067798-18067817 | None:intergenic | 20.0% |
| !!! | ATAGAACAATTTTCATAACA+AGG | - | chr4.1:18067948-18067967 | None:intergenic | 20.0% |
| !!! | TGTTTAAGATAACAAAATTC+AGG | - | chr4.1:18068857-18068876 | None:intergenic | 20.0% |
| ! | AAGGCTTATTGAAAGTTAAA+CGG | - | chr4.1:18068912-18068931 | None:intergenic | 25.0% |
| ! | ATTAGAAACAAAAGGTAGAT+GGG | + | chr4.1:18069014-18069033 | MS.gene36509:intron | 25.0% |
| ! | GACAAAAATAATGATAAAGG+GGG | - | chr4.1:18067546-18067565 | None:intergenic | 25.0% |
| ! | GCTAAATCATTAGAAACAAA+AGG | + | chr4.1:18069006-18069025 | MS.gene36509:intron | 25.0% |
| ! | TAAACAGTTGTAAGATTGTA+TGG | - | chr4.1:18066565-18066584 | None:intergenic | 25.0% |
| ! | TCCAAATAACTTAACCTATA+AGG | - | chr4.1:18068532-18068551 | None:intergenic | 25.0% |
| ! | TCCTTATAGGTTAAGTTATT+TGG | + | chr4.1:18068528-18068547 | MS.gene36509:intron | 25.0% |
| ! | TTAAACTCTATTAGGATTCA+GGG | + | chr4.1:18066810-18066829 | MS.gene36509:intron | 25.0% |
| ! | TTCAGTGTTTAAACTCTATT+AGG | + | chr4.1:18066802-18066821 | MS.gene36509:intron | 25.0% |
| ! | TTTAAACTCTATTAGGATTC+AGG | + | chr4.1:18066809-18066828 | MS.gene36509:intron | 25.0% |
| !! | AAAAAACAGTTAAATGGGTT+TGG | + | chr4.1:18068422-18068441 | MS.gene36509:intron | 25.0% |
| !! | AATGATTTTTAACACCTTGA+AGG | + | chr4.1:18069161-18069180 | MS.gene36509:intron | 25.0% |
| !! | ACATTGAAATTTGAAACAGA+TGG | + | chr4.1:18068224-18068243 | MS.gene36509:intron | 25.0% |
| !! | ATGATTTTTAACACCTTGAA+GGG | + | chr4.1:18069162-18069181 | MS.gene36509:intron | 25.0% |
| !! | GGTTTTCTATGATTTAAGTA+AGG | + | chr4.1:18069035-18069054 | MS.gene36509:intron | 25.0% |
| !! | TCATGAAGTGATAATGTTAA+AGG | - | chr4.1:18067606-18067625 | None:intergenic | 25.0% |
| !! | TTACCAAACATGATTCTTTT+GGG | - | chr4.1:18068001-18068020 | None:intergenic | 25.0% |
| !! | TTTACCAAACATGATTCTTT+TGG | - | chr4.1:18068002-18068021 | None:intergenic | 25.0% |
| !!! | CATTTGATGTTGTTGATTTA+GGG | - | chr4.1:18066324-18066343 | None:intergenic | 25.0% |
| !!! | TTTTCTTCAGAAAGTACAAA+AGG | + | chr4.1:18066393-18066412 | MS.gene36509:intron | 25.0% |
| AAACCCAAAAGAATCATGTT+TGG | + | chr4.1:18067995-18068014 | MS.gene36509:intron | 30.0% | |
| AAGAAGAACCAATAAGGATT+TGG | - | chr4.1:18068818-18068837 | None:intergenic | 30.0% | |
| AAGATTAGAAGTAGAAGACA+CGG | - | chr4.1:18069355-18069374 | None:intergenic | 30.0% | |
| AAGGATACCGTGAAAAAATA+TGG | + | chr4.1:18067730-18067749 | MS.gene36509:CDS | 30.0% | |
| AAGTTAAAATTTCACCTCCT+CGG | - | chr4.1:18066735-18066754 | None:intergenic | 30.0% | |
| AAGTTTCTTGATGTTGATAC+TGG | + | chr4.1:18069472-18069491 | MS.gene36509:CDS | 30.0% | |
| ACTAATGAAAATGGTTGAGA+AGG | - | chr4.1:18066710-18066729 | None:intergenic | 30.0% | |
| ACTAGTTACTATACACCATT+TGG | + | chr4.1:18068947-18068966 | MS.gene36509:intron | 30.0% | |
| AGGATACCGTGAAAAAATAT+GGG | + | chr4.1:18067731-18067750 | MS.gene36509:CDS | 30.0% | |
| ATAATGATAAAGGGGGAAAA+TGG | - | chr4.1:18067539-18067558 | None:intergenic | 30.0% | |
| ATCCAATAGATGGTACTAAA+GGG | + | chr4.1:18067008-18067027 | MS.gene36509:CDS | 30.0% | |
| CATGCTTATTGAGAAAAGAT+GGG | - | chr4.1:18067868-18067887 | None:intergenic | 30.0% | |
| CATTAGAAACAAAAGGTAGA+TGG | + | chr4.1:18069013-18069032 | MS.gene36509:intron | 30.0% | |
| CATTCTTCTTCTAATGAAGT+TGG | + | chr4.1:18067242-18067261 | MS.gene36509:CDS | 30.0% | |
| CATTTGTGTAAGAGAACAAA+TGG | - | chr4.1:18068788-18068807 | None:intergenic | 30.0% | |
| GATTCAGTATGTAAAGATCT+AGG | + | chr4.1:18068494-18068513 | MS.gene36509:intron | 30.0% | |
| GTTGATTACCAAATCCTTAT+TGG | + | chr4.1:18068807-18068826 | MS.gene36509:intron | 30.0% | |
| TAAACTCTATTAGGATTCAG+GGG | + | chr4.1:18066811-18066830 | MS.gene36509:intron | 30.0% | |
| TAGTAAAGAAGACATACTGA+AGG | - | chr4.1:18068931-18068950 | None:intergenic | 30.0% | |
| TGTAAGAGAACAAATGGAAA+TGG | - | chr4.1:18068782-18068801 | None:intergenic | 30.0% | |
| ! | AATGTTTCTATGCTTGAGAT+TGG | + | chr4.1:18069265-18069284 | MS.gene36509:intron | 30.0% |
| ! | TGATAGTGCAGAAATTTATG+TGG | + | chr4.1:18069234-18069253 | MS.gene36509:intron | 30.0% |
| ! | TTGAAATTTGAAACAGATGG+TGG | + | chr4.1:18068227-18068246 | MS.gene36509:intron | 30.0% |
| ! | TTGTGTGATTTGTGTACATT+TGG | + | chr4.1:18066636-18066655 | MS.gene36509:intron | 30.0% |
| !! | ATTGATAATGGTAAGTCTGA+AGG | + | chr4.1:18066956-18066975 | MS.gene36509:CDS | 30.0% |
| !! | GCATTTGATGTTGTTGATTT+AGG | - | chr4.1:18066325-18066344 | None:intergenic | 30.0% |
| !! | GTGATTATTTTTCTAGACTC+TGG | + | chr4.1:18069105-18069124 | MS.gene36509:intron | 30.0% |
| !!! | CATGATCCCATATTTTTTCA+CGG | - | chr4.1:18067740-18067759 | None:intergenic | 30.0% |
| !!! | TTTTTTTTACCGTGTTTGAG+TGG | - | chr4.1:18068407-18068426 | None:intergenic | 30.0% |
| AAAGAAACAGTGGATAGTGT+CGG | + | chr4.1:18068334-18068353 | MS.gene36509:intron | 35.0% | |
| AACAACAGATGATGTGCTTA+AGG | + | chr4.1:18066931-18066950 | MS.gene36509:CDS | 35.0% | |
| AATGATACTCTCGCTAATGA+AGG | + | chr4.1:18066887-18066906 | MS.gene36509:CDS | 35.0% | |
| AATTGTACTTCTACAGAAGC+TGG | + | chr4.1:18069400-18069419 | MS.gene36509:intron | 35.0% | |
| AGATCAAGGGAAAGTTGTAT+TGG | + | chr4.1:18067166-18067185 | MS.gene36509:CDS | 35.0% | |
| ATATGTTCCATTGCCAACTT+TGG | - | chr4.1:18067282-18067301 | None:intergenic | 35.0% | |
| ATTGAAAGTTAAACGGAGAG+TGG | - | chr4.1:18068905-18068924 | None:intergenic | 35.0% | |
| CTCCTCTTACAAACCTATAA+CGG | - | chr4.1:18067118-18067137 | None:intergenic | 35.0% | |
| CTTTCAAGAAAACAAGTGTC+AGG | + | chr4.1:18069197-18069216 | MS.gene36509:intron | 35.0% | |
| GAAAGTTGTATTGGGTGTAT+TGG | + | chr4.1:18067175-18067194 | MS.gene36509:CDS | 35.0% | |
| GATCAAGGGAAAGTTGTATT+GGG | + | chr4.1:18067167-18067186 | MS.gene36509:CDS | 35.0% | |
| GATCCAATAGATGGTACTAA+AGG | + | chr4.1:18067007-18067026 | MS.gene36509:CDS | 35.0% | |
| GCATGCTTATTGAGAAAAGA+TGG | - | chr4.1:18067869-18067888 | None:intergenic | 35.0% | |
| GTATAGATTTATGTATGGGC+TGG | + | chr4.1:18068472-18068491 | MS.gene36509:intron | 35.0% | |
| GTGCTTAAGGCTATTGATAA+TGG | + | chr4.1:18066944-18066963 | MS.gene36509:CDS | 35.0% | |
| TACCCTTTAGTACCATCTAT+TGG | - | chr4.1:18067013-18067032 | None:intergenic | 35.0% | |
| TCAAAAAATGACGCTTCTTC+TGG | - | chr4.1:18067442-18067461 | None:intergenic | 35.0% | |
| TCACTTCATGAACAGAAACT+CGG | + | chr4.1:18067615-18067634 | MS.gene36509:intron | 35.0% | |
| TCAGCTAGTGTTCAAGAAAT+TGG | + | chr4.1:18067842-18067861 | MS.gene36509:intron | 35.0% | |
| TGGAACATATATGCAAGCAT+TGG | + | chr4.1:18067292-18067311 | MS.gene36509:CDS | 35.0% | |
| TTAACTGCTCTCAAAAGTGA+AGG | - | chr4.1:18069526-18069545 | None:intergenic | 35.0% | |
| TTGAACACTAGCTGAAAGAT+GGG | - | chr4.1:18067837-18067856 | None:intergenic | 35.0% | |
| TTTGTGTACATTTGGTTGAC+AGG | + | chr4.1:18066644-18066663 | MS.gene36509:intron | 35.0% | |
| ! | AAATTTGAAACAGATGGTGG+AGG | + | chr4.1:18068230-18068249 | MS.gene36509:intron | 35.0% |
| ! | AAGAAGAATGCTGCTGATTA+TGG | - | chr4.1:18067232-18067251 | None:intergenic | 35.0% |
| ! | GCATTTTCTAATTCCCTTCA+AGG | - | chr4.1:18069178-18069197 | None:intergenic | 35.0% |
| ! | GGCTCTTTTCAAATCCTTAT+AGG | + | chr4.1:18068515-18068534 | MS.gene36509:intron | 35.0% |
| ! | TGTCTTTTCTTTGCCAAAGT+TGG | + | chr4.1:18067266-18067285 | MS.gene36509:CDS | 35.0% |
| ! | TTTTCACGGTATCCTTTGTT+GGG | - | chr4.1:18067726-18067745 | None:intergenic | 35.0% |
| ! | TTTTTCACGGTATCCTTTGT+TGG | - | chr4.1:18067727-18067746 | None:intergenic | 35.0% |
| !! | AATTTGAAACAGATGGTGGA+GGG | + | chr4.1:18068231-18068250 | MS.gene36509:intron | 35.0% |
| !! | ACATATATGCAAGCATTGGA+TGG | + | chr4.1:18067296-18067315 | MS.gene36509:CDS | 35.0% |
| !! | TTCCTTTTGAGAAGTCCAAA+GGG | - | chr4.1:18069453-18069472 | None:intergenic | 35.0% |
| !! | TTTCCTTTTGAGAAGTCCAA+AGG | - | chr4.1:18069454-18069473 | None:intergenic | 35.0% |
| !!! | TGTTTTGAGAAGTGAGAACA+CGG | + | chr4.1:18068084-18068103 | MS.gene36509:intron | 35.0% |
| AAAATATGGGATCATGCTGC+TGG | + | chr4.1:18067744-18067763 | MS.gene36509:CDS | 40.0% | |
| AACCAGACAAGTCCTAAATC+TGG | - | chr4.1:18067920-18067939 | None:intergenic | 40.0% | |
| AACCCTTTGGACTTCTCAAA+AGG | + | chr4.1:18069448-18069467 | MS.gene36509:CDS | 40.0% | |
| AAGAAACAGTGGATAGTGTC+GGG | + | chr4.1:18068335-18068354 | MS.gene36509:intron | 40.0% | |
| ACTTCACATGTAGAGTTCCT+TGG | - | chr4.1:18068719-18068738 | None:intergenic | 40.0% | |
| ACTTCATGAACAGAAACTCG+GGG | + | chr4.1:18067617-18067636 | MS.gene36509:intron | 40.0% | |
| AGAACACGGTTGAAAATGGA+TGG | + | chr4.1:18068098-18068117 | MS.gene36509:intron | 40.0% | |
| AGTGAGAACACGGTTGAAAA+TGG | + | chr4.1:18068094-18068113 | MS.gene36509:intron | 40.0% | |
| ATAACACAGCCACTCAAACA+CGG | + | chr4.1:18068395-18068414 | MS.gene36509:intron | 40.0% | |
| ATCTAGCAGAGCTAATGCTA+TGG | - | chr4.1:18067150-18067169 | None:intergenic | 40.0% | |
| ATTATGACCAATTGCCATCC+AGG | + | chr4.1:18067393-18067412 | MS.gene36509:intron | 40.0% | |
| ATTGACAGCCAGGCTAAATA+CGG | + | chr4.1:18067660-18067679 | MS.gene36509:CDS | 40.0% | |
| CACTTCATGAACAGAAACTC+GGG | + | chr4.1:18067616-18067635 | MS.gene36509:intron | 40.0% | |
| CGCTTCTTCTGGATTATCAA+CGG | - | chr4.1:18067431-18067450 | None:intergenic | 40.0% | |
| CTTGAACACTAGCTGAAAGA+TGG | - | chr4.1:18067838-18067857 | None:intergenic | 40.0% | |
| GACGATAACGAACCAGATTT+AGG | + | chr4.1:18067905-18067924 | MS.gene36509:intron | 40.0% | |
| GAGCTAATGCTATGGCATAT+TGG | - | chr4.1:18067142-18067161 | None:intergenic | 40.0% | |
| GTGCAGAAATTTATGTGGCT+AGG | + | chr4.1:18069239-18069258 | MS.gene36509:intron | 40.0% | |
| TATTTGCGTTTCCCCAACAA+AGG | + | chr4.1:18067711-18067730 | MS.gene36509:CDS | 40.0% | |
| TCCTCGGCTACTAATGAAAA+TGG | - | chr4.1:18066719-18066738 | None:intergenic | 40.0% | |
| TGAACACTAGCTGAAAGATG+GGG | - | chr4.1:18067836-18067855 | None:intergenic | 40.0% | |
| TGCCGTTATAGGTTTGTAAG+AGG | + | chr4.1:18067113-18067132 | MS.gene36509:intron | 40.0% | |
| TTCTTTGCCAAAGTTGGCAA+TGG | + | chr4.1:18067272-18067291 | MS.gene36509:CDS | 40.0% | |
| TTTCACGGTATCCTTTGTTG+GGG | - | chr4.1:18067725-18067744 | None:intergenic | 40.0% | |
| ! | AACCAGATTTAGGACTTGTC+TGG | + | chr4.1:18067915-18067934 | MS.gene36509:intron | 40.0% |
| ! | ACCATTTTCATTAGTAGCCG+AGG | + | chr4.1:18066715-18066734 | MS.gene36509:CDS | 40.0% |
| ! | ATGCTGCTGATTATGGCTAA+TGG | - | chr4.1:18067225-18067244 | None:intergenic | 40.0% |
| ! | ATTTTCATTAGTAGCCGAGG+AGG | + | chr4.1:18066718-18066737 | MS.gene36509:CDS | 40.0% |
| ! | GAATCTAGAGTATGATGCCA+AGG | + | chr4.1:18068699-18068718 | MS.gene36509:intron | 40.0% |
| ! | GATAATGGTAAGTCTGAAGG+TGG | + | chr4.1:18066959-18066978 | MS.gene36509:CDS | 40.0% |
| ! | GATCTGCTGTGAAGTTGATT+TGG | + | chr4.1:18069057-18069076 | MS.gene36509:intron | 40.0% |
| ! | GGATGGTTCTACACAAACTA+AGG | + | chr4.1:18067313-18067332 | MS.gene36509:CDS | 40.0% |
| ! | TTTAGGGTTATTGACATGCC+TGG | - | chr4.1:18066308-18066327 | None:intergenic | 40.0% |
| !! | AAAGTGAAGGCATCAAGTTC+TGG | - | chr4.1:18069513-18069532 | None:intergenic | 40.0% |
| !! | CATTAGCTCTGCTAGATCAA+GGG | + | chr4.1:18067153-18067172 | MS.gene36509:CDS | 40.0% |
| !! | GCGGAAATGATGGATGTTAT+AGG | + | chr4.1:18068201-18068220 | MS.gene36509:intron | 40.0% |
| !!! | CGGACTTGTTTTTACTGTAC+AGG | - | chr4.1:18069335-18069354 | None:intergenic | 40.0% |
| !!! | TGGGTTTTGGATCCAATAGA+TGG | + | chr4.1:18066998-18067017 | MS.gene36509:CDS | 40.0% |
| ACAGATCGTAATGAGGGAAG+TGG | + | chr4.1:18068256-18068275 | MS.gene36509:intron | 45.0% | |
| ACATTCACCTGGATGGCAAT+TGG | - | chr4.1:18067403-18067422 | None:intergenic | 45.0% | |
| ACCACAAAGCCACAACAGTT+TGG | - | chr4.1:18069087-18069106 | None:intergenic | 45.0% | |
| AGGGTGACAGATCGTAATGA+GGG | + | chr4.1:18068250-18068269 | MS.gene36509:intron | 45.0% | |
| ATGGTTGCCAGTGGAAGATT+TGG | - | chr4.1:18067206-18067225 | None:intergenic | 45.0% | |
| CAACGGTACTAACATTCACC+TGG | - | chr4.1:18067414-18067433 | None:intergenic | 45.0% | |
| CATTTGGTTGACAGGTTCAC+AGG | + | chr4.1:18066652-18066671 | MS.gene36509:intron | 45.0% | |
| CCATAATCAGCAACAGTGAC+AGG | - | chr4.1:18066460-18066479 | None:intergenic | 45.0% | |
| GGTACTAACATTCACCTGGA+TGG | - | chr4.1:18067410-18067429 | None:intergenic | 45.0% | |
| TAGCTGAAAGATGGGGTGAA+AGG | - | chr4.1:18067829-18067848 | None:intergenic | 45.0% | |
| TCAGGCAACGAAAGAAACAG+TGG | + | chr4.1:18068324-18068343 | MS.gene36509:intron | 45.0% | |
| TCTTCGTAAGGAAAGTGGTC+AGG | + | chr4.1:18066835-18066854 | MS.gene36509:CDS | 45.0% | |
| TGAGAAGTCCAAAGGGTTTC+CGG | - | chr4.1:18069446-18069465 | None:intergenic | 45.0% | |
| TGCTTGTCTGATGCCGTTAT+AGG | + | chr4.1:18067102-18067121 | MS.gene36509:intron | 45.0% | |
| TGGTCATAATGCAACTGTCG+AGG | - | chr4.1:18067383-18067402 | None:intergenic | 45.0% | |
| TGTACTTCTACAGAAGCTGG+AGG | + | chr4.1:18069403-18069422 | MS.gene36509:intron | 45.0% | |
| TTATGGCTAATGGTTGCCAG+TGG | - | chr4.1:18067215-18067234 | None:intergenic | 45.0% | |
| TTTGAGTGGCTGTGTTATCG+CGG | - | chr4.1:18068393-18068412 | None:intergenic | 45.0% | |
| ! | ACCAAACTGTTGTGGCTTTG+TGG | + | chr4.1:18069083-18069102 | MS.gene36509:intron | 45.0% |
| ! | ATGGTAGTGACTAGTGATGG+AGG | + | chr4.1:18068298-18068317 | MS.gene36509:intron | 45.0% |
| ! | CCTGTCACTGTTGCTGATTA+TGG | + | chr4.1:18066457-18066476 | MS.gene36509:CDS | 45.0% |
| ! | CTGGAGCTAGTTTAGTGTCT+TGG | + | chr4.1:18069124-18069143 | MS.gene36509:intron | 45.0% |
| ! | GTGATGGTAGTGACTAGTGA+TGG | + | chr4.1:18068295-18068314 | MS.gene36509:intron | 45.0% |
| ! | TGGTAGTGACTAGTGATGGA+GGG | + | chr4.1:18068299-18068318 | MS.gene36509:intron | 45.0% |
| ! | TTTGGAGCACCAAACTGTTG+TGG | + | chr4.1:18069075-18069094 | MS.gene36509:intron | 45.0% |
| !! | CAGTGACAGTAGAAGGTGTT+GGG | + | chr4.1:18068364-18068383 | MS.gene36509:intron | 45.0% |
| !! | GCATTAGCTCTGCTAGATCA+AGG | + | chr4.1:18067152-18067171 | MS.gene36509:CDS | 45.0% |
| AAATACGGAGCTCTGTCCAG+AGG | + | chr4.1:18067675-18067694 | MS.gene36509:CDS | 50.0% | |
| AAGTCTGAAGGTGGTTCCGT+TGG | + | chr4.1:18066968-18066987 | MS.gene36509:CDS | 50.0% | |
| ACAGAGCTCCGTATTTAGCC+TGG | - | chr4.1:18067671-18067690 | None:intergenic | 50.0% | |
| ACCAGTCAGAATTGACAGCC+AGG | + | chr4.1:18067650-18067669 | MS.gene36509:CDS | 50.0% | |
| AGACAGCAATGGAGGCTGTT+GGG | + | chr4.1:18068159-18068178 | MS.gene36509:intron | 50.0% | |
| ATATATAGCCCCGTCTCCTC+TGG | - | chr4.1:18067694-18067713 | None:intergenic | 50.0% | |
| ATGGATGGTGACAGCAGCAA+TGG | + | chr4.1:18068113-18068132 | MS.gene36509:intron | 50.0% | |
| GAGGGTGACAGATCGTAATG+AGG | + | chr4.1:18068249-18068268 | MS.gene36509:intron | 50.0% | |
| GATCGTAATGAGGGAAGTGG+TGG | + | chr4.1:18068259-18068278 | MS.gene36509:intron | 50.0% | |
| GCTGGCTGTATTGTTGTGAG+CGG | + | chr4.1:18067762-18067781 | MS.gene36509:CDS | 50.0% | |
| GGATTCAGGGGATCTTCGTA+AGG | + | chr4.1:18066823-18066842 | MS.gene36509:intron | 50.0% | |
| GGCTTGTCCAAATCTTCCAC+TGG | + | chr4.1:18067196-18067215 | MS.gene36509:CDS | 50.0% | |
| GGGGATCTTCGTAAGGAAAG+TGG | + | chr4.1:18066830-18066849 | MS.gene36509:CDS | 50.0% | |
| GGTATTGTCTCAGATGCTGC+CGG | + | chr4.1:18069424-18069443 | MS.gene36509:CDS | 50.0% | |
| GTTGACAGGTTCACAGGTCT+TGG | + | chr4.1:18066658-18066677 | MS.gene36509:intron | 50.0% | |
| TGGCTGTCAATTCTGACTGG+TGG | - | chr4.1:18067651-18067670 | None:intergenic | 50.0% | |
| TGTTGGGCAGCATAGGTTGT+CGG | + | chr4.1:18068175-18068194 | MS.gene36509:intron | 50.0% | |
| ! | GCAGTGACAGTAGAAGGTGT+TGG | + | chr4.1:18068363-18068382 | MS.gene36509:intron | 50.0% |
| ! | GTACTGGCAGTGACAGTAGA+AGG | + | chr4.1:18068357-18068376 | MS.gene36509:intron | 50.0% |
| !! | CAAAACCCAGTGTCGACCAA+CGG | - | chr4.1:18066987-18067006 | None:intergenic | 50.0% |
| !! | TGGAGAGTGTTGGGAAGTGA+TGG | + | chr4.1:18068279-18068298 | MS.gene36509:intron | 50.0% |
| AGATGCTGCCGGAAACCCTT+TGG | + | chr4.1:18069435-18069454 | MS.gene36509:CDS | 55.0% | |
| GAGACAGCAATGGAGGCTGT+TGG | + | chr4.1:18068158-18068177 | MS.gene36509:intron | 55.0% | |
| GCCTGGCTGTCAATTCTGAC+TGG | - | chr4.1:18067654-18067673 | None:intergenic | 55.0% | |
| GGAAGTCGAGACAGCAATGG+AGG | + | chr4.1:18068151-18068170 | MS.gene36509:intron | 55.0% | |
| GTGACAGCAGCAATGGTGAG+TGG | + | chr4.1:18068120-18068139 | MS.gene36509:intron | 55.0% | |
| GTTGGGCAGCATAGGTTGTC+GGG | + | chr4.1:18068176-18068195 | MS.gene36509:intron | 55.0% | |
| TGGTTCCGTTGGTCGACACT+GGG | + | chr4.1:18066979-18066998 | MS.gene36509:CDS | 55.0% | |
| ! | AGGGAAGTGGTGGAGAGTGT+TGG | + | chr4.1:18068269-18068288 | MS.gene36509:intron | 55.0% |
| ! | CAGTGGATAGTGTCGGGTAC+TGG | + | chr4.1:18068341-18068360 | MS.gene36509:intron | 55.0% |
| ! | CGTTGGTCGACACTGGGTTT+TGG | + | chr4.1:18066985-18067004 | MS.gene36509:CDS | 55.0% |
| !! | GACTAGTGATGGAGGGTGTC+AGG | + | chr4.1:18068306-18068325 | MS.gene36509:intron | 55.0% |
| !! | GGGAAGTGGTGGAGAGTGTT+GGG | + | chr4.1:18068270-18068289 | MS.gene36509:intron | 55.0% |
| !! | TTGTCGGGTGGCGGAAATGA+TGG | + | chr4.1:18068191-18068210 | MS.gene36509:intron | 55.0% |
| AGCTCTGTCCAGAGGAGACG+GGG | + | chr4.1:18067683-18067702 | MS.gene36509:CDS | 60.0% | |
| CAATGGTGAGTGGTGCCTGG+CGG | + | chr4.1:18068130-18068149 | MS.gene36509:intron | 60.0% | |
| CAGCAATGGTGAGTGGTGCC+TGG | + | chr4.1:18068127-18068146 | MS.gene36509:intron | 60.0% | |
| CAGCATAGGTTGTCGGGTGG+CGG | + | chr4.1:18068182-18068201 | MS.gene36509:intron | 60.0% | |
| GAGCTCTGTCCAGAGGAGAC+GGG | + | chr4.1:18067682-18067701 | MS.gene36509:CDS | 60.0% | |
| GCAAAGACGAGCAGCGAGAG+TGG | - | chr4.1:18066286-18066305 | None:intergenic | 60.0% | |
| GGAGCTCTGTCCAGAGGAGA+CGG | + | chr4.1:18067681-18067700 | MS.gene36509:CDS | 60.0% | |
| GGCGGAAGTCGAGACAGCAA+TGG | + | chr4.1:18068148-18068167 | MS.gene36509:intron | 60.0% | |
| GTGGTTCCGTTGGTCGACAC+TGG | + | chr4.1:18066978-18066997 | MS.gene36509:CDS | 60.0% | |
| TCTCGCTGCTCGTCTTTGCC+AGG | + | chr4.1:18066287-18066306 | MS.gene36509:CDS | 60.0% | |
| TGGAGGCTGTTGGGCAGCAT+AGG | + | chr4.1:18068168-18068187 | MS.gene36509:intron | 60.0% | |
| TTGCTGTCTCGACTTCCGCC+AGG | - | chr4.1:18068148-18068167 | None:intergenic | 60.0% | |
| GGGCAGCATAGGTTGTCGGG+TGG | + | chr4.1:18068179-18068198 | MS.gene36509:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18066240 | 18069579 | 18066240 | ID=MS.gene36509 |
| chr4.1 | mRNA | 18066240 | 18069579 | 18066240 | ID=MS.gene36509.t1;Parent=MS.gene36509 |
| chr4.1 | exon | 18066240 | 18066312 | 18066240 | ID=MS.gene36509.t1.exon1;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18066240 | 18066312 | 18066240 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18066407 | 18066478 | 18066407 | ID=MS.gene36509.t1.exon2;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18066407 | 18066478 | 18066407 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18066666 | 18066739 | 18066666 | ID=MS.gene36509.t1.exon3;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18066666 | 18066739 | 18066666 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18066824 | 18067029 | 18066824 | ID=MS.gene36509.t1.exon4;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18066824 | 18067029 | 18066824 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18067124 | 18067334 | 18067124 | ID=MS.gene36509.t1.exon5;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18067124 | 18067334 | 18067124 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18067415 | 18067513 | 18067415 | ID=MS.gene36509.t1.exon6;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18067415 | 18067513 | 18067415 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18067630 | 18067783 | 18067630 | ID=MS.gene36509.t1.exon7;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18067630 | 18067783 | 18067630 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| chr4.1 | exon | 18069416 | 18069579 | 18069416 | ID=MS.gene36509.t1.exon8;Parent=MS.gene36509.t1 |
| chr4.1 | CDS | 18069416 | 18069579 | 18069416 | ID=cds.MS.gene36509.t1;Parent=MS.gene36509.t1 |
| Gene Sequence |
| Protein sequence |
