Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023190.t1 | XP_004504666.1 | 92.8 | 347 | 25 | 0 | 4 | 350 | 54 | 400 | 4.90E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023190.t1 | Q42546 | 70.7 | 352 | 99 | 3 | 3 | 350 | 2 | 353 | 2.4e-131 | 469.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023190.t1 | A0A1S2YGY7 | 92.8 | 347 | 25 | 0 | 4 | 350 | 54 | 400 | 3.6e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023190 | MS.gene047523 | PPI |
| MS.gene023190 | MS.gene01334 | PPI |
| MS.gene023190 | MS.gene046100 | PPI |
| MS.gene023190 | MS.gene01773 | PPI |
| MS.gene070607 | MS.gene023190 | PPI |
| MS.gene29934 | MS.gene023190 | PPI |
| MS.gene02315 | MS.gene023190 | PPI |
| MS.gene023190 | MS.gene01744 | PPI |
| MS.gene01364 | MS.gene023190 | PPI |
| MS.gene002387 | MS.gene023190 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023190.t1 | MTR_4g094672 | 94.167 | 240 | 14 | 0 | 57 | 296 | 1 | 240 | 5.84e-169 | 471 |
| MS.gene023190.t1 | MTR_8g464260 | 42.276 | 369 | 185 | 6 | 4 | 344 | 6 | 374 | 5.90e-93 | 282 |
| MS.gene023190.t1 | MTR_2g012510 | 44.034 | 352 | 167 | 6 | 4 | 325 | 91 | 442 | 4.94e-91 | 280 |
| MS.gene023190.t1 | MTR_4g090525 | 37.429 | 350 | 186 | 8 | 4 | 325 | 82 | 426 | 1.23e-62 | 206 |
| MS.gene023190.t1 | MTR_2g011680 | 32.708 | 373 | 208 | 12 | 2 | 342 | 47 | 408 | 6.12e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023190.t1 | AT5G63980 | 76.705 | 352 | 78 | 3 | 3 | 350 | 2 | 353 | 0.0 | 533 |
| MS.gene023190.t1 | AT5G63990 | 61.919 | 344 | 126 | 3 | 3 | 344 | 2 | 342 | 2.65e-150 | 427 |
| MS.gene023190.t1 | AT5G64000 | 63.188 | 345 | 123 | 2 | 3 | 346 | 2 | 343 | 1.08e-148 | 423 |
| MS.gene023190.t1 | AT5G09290 | 59.420 | 345 | 126 | 4 | 4 | 346 | 3 | 335 | 5.58e-146 | 416 |
| MS.gene023190.t1 | AT5G63990 | 60.811 | 296 | 111 | 3 | 3 | 296 | 2 | 294 | 3.28e-124 | 359 |
| MS.gene023190.t1 | AT5G64000 | 61.538 | 299 | 111 | 2 | 49 | 346 | 5 | 300 | 1.05e-123 | 358 |
| MS.gene023190.t1 | AT5G54390 | 42.466 | 365 | 183 | 10 | 3 | 342 | 5 | 367 | 7.54e-86 | 264 |
| MS.gene023190.t1 | AT4G05090 | 33.242 | 364 | 200 | 12 | 2 | 339 | 44 | 390 | 2.47e-44 | 157 |
| MS.gene023190.t1 | AT4G05090 | 29.670 | 364 | 181 | 11 | 2 | 339 | 44 | 358 | 7.18e-35 | 131 |
Find 76 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAACTCTATTAGGATTC+AGG | 0.211302 | 4.3:+18593419 | MS.gene023190:intron |
| CTTTGGTCGACACTGGGTTT+TGG | 0.235873 | 4.3:+18593595 | MS.gene023190:CDS |
| TGAGAAGTCCAAAGGGTTTC+CGG | 0.253320 | 4.3:-18596055 | None:intergenic |
| AAGAAGAATGCTGCTGATTA+TGG | 0.294931 | 4.3:-18593839 | None:intergenic |
| TCCTCGGCTACTAATGAAAA+TGG | 0.299974 | 4.3:-18593326 | None:intergenic |
| CCTGTCACTGTTGCTGATTA+TGG | 0.316799 | 4.3:+18593067 | MS.gene023190:CDS |
| ATGGTTGCCAGTGGAAGATT+TGG | 0.329719 | 4.3:-18593813 | None:intergenic |
| AAAGTGAAGGCATCAAGTTC+TGG | 0.341094 | 4.3:-18596122 | None:intergenic |
| TACCCTTTAGTACCATCTAT+TGG | 0.348231 | 4.3:-18593620 | None:intergenic |
| AAGTTTCTTGATGTTGATAC+TGG | 0.362764 | 4.3:+18596084 | MS.gene023190:CDS |
| GTGGTTCCTTTGGTCGACAC+TGG | 0.379943 | 4.3:+18593588 | MS.gene023190:CDS |
| GTTGACAGGTTCACAGGTCT+TGG | 0.380007 | 4.3:+18593268 | MS.gene023190:intron |
| GAAAGTTGTATTGGGTGTAT+TGG | 0.382393 | 4.3:+18593785 | MS.gene023190:CDS |
| AACAACAGATGATGTGCTTA+AGG | 0.386211 | 4.3:+18593541 | MS.gene023190:CDS |
| ATATATAGCCCCGTCTCCTC+TGG | 0.394658 | 4.3:-18594301 | None:intergenic |
| ATATGTTCCATTGCCAACTT+TGG | 0.422006 | 4.3:-18593889 | None:intergenic |
| AGATGCTGCCGGAAACCCTT+TGG | 0.422474 | 4.3:+18596047 | MS.gene023190:CDS |
| GAGCTAATGCTATGGCATAT+TGG | 0.422687 | 4.3:-18593749 | None:intergenic |
| CATTCTTCTTCTAATGAAGT+TGG | 0.427695 | 4.3:+18593852 | MS.gene023190:CDS |
| TCTCGCTGCTCGTCTTTGCC+AGG | 0.427962 | 4.3:+18592897 | MS.gene023190:CDS |
| AGATCAAGGGAAAGTTGTAT+TGG | 0.434380 | 4.3:+18593776 | MS.gene023190:CDS |
| AAGTCTGAAGGTGGTTCCTT+TGG | 0.440735 | 4.3:+18593578 | MS.gene023190:CDS |
| CATTTGGTTGACAGGTTCAC+AGG | 0.441171 | 4.3:+18593262 | MS.gene023190:intron |
| AACCCTTTGGACTTCTCAAA+AGG | 0.444660 | 4.3:+18596060 | MS.gene023190:CDS |
| GTGCTTAAGGCTATTGATAA+TGG | 0.450269 | 4.3:+18593554 | MS.gene023190:CDS |
| GATCCAATAGATGGTACTAA+AGG | 0.456630 | 4.3:+18593617 | MS.gene023190:CDS |
| GGATGGTTCTACACAAACTA+AGG | 0.458730 | 4.3:+18593923 | MS.gene023190:CDS |
| TTAAACTCTATTAGGATTCA+GGG | 0.465154 | 4.3:+18593420 | MS.gene023190:intron |
| ATGCTGCTGATTATGGCTAA+TGG | 0.472819 | 4.3:-18593832 | None:intergenic |
| TTCTTTGCCAAAGTTGGCAA+TGG | 0.475551 | 4.3:+18593882 | MS.gene023190:CDS |
| TGCCGTTATAGGTTTGTAAG+AGG | 0.478049 | 4.3:+18593723 | MS.gene023190:intron |
| GCATTAGCTCTGCTAGATCA+AGG | 0.483237 | 4.3:+18593762 | MS.gene023190:CDS |
| GATCAAGGGAAAGTTGTATT+GGG | 0.494154 | 4.3:+18593777 | MS.gene023190:CDS |
| GAGCTCTGTCCAGAGGAGAC+GGG | 0.503558 | 4.3:+18594292 | MS.gene023190:CDS |
| ATCCAATAGATGGTACTAAA+GGG | 0.503600 | 4.3:+18593618 | MS.gene023190:CDS |
| TGGTTCCTTTGGTCGACACT+GGG | 0.506278 | 4.3:+18593589 | MS.gene023190:CDS |
| GCCTGGCTGTCAATTCTGAC+TGG | 0.506783 | 4.3:-18594261 | None:intergenic |
| GGCTTGTCCAAATCTTCCAC+TGG | 0.511392 | 4.3:+18593806 | MS.gene023190:CDS |
| ATTGACAGCCAGGCTAAATA+CGG | 0.513091 | 4.3:+18594270 | MS.gene023190:CDS |
| TTTAGGGTTATTGACATGCC+TGG | 0.513177 | 4.3:-18592915 | None:intergenic |
| CCATAATCAGCAACAGTGAC+AGG | 0.514252 | 4.3:-18593067 | None:intergenic |
| GCAAAGACGAGCAGCGAGAG+TGG | 0.515405 | 4.3:-18592893 | None:intergenic |
| TGGAACATATATGCAAGCAT+TGG | 0.519175 | 4.3:+18593902 | MS.gene023190:CDS |
| AAGTTAAAATTTCACCTCCT+CGG | 0.521505 | 4.3:-18593342 | None:intergenic |
| TCTTCGTAAGGAAAGTGGTC+AGG | 0.526988 | 4.3:+18593445 | MS.gene023190:CDS |
| GGAGCTCTGTCCAGAGGAGA+CGG | 0.527942 | 4.3:+18594291 | MS.gene023190:CDS |
| CACTTCATGAACAGAAACTC+GGG | 0.528428 | 4.3:+18594226 | MS.gene023190:intron |
| ACTAATGAAAATGGTTGAGA+AGG | 0.531083 | 4.3:-18593317 | None:intergenic |
| AATGATACTCTCGCTAATGA+AGG | 0.531200 | 4.3:+18593497 | MS.gene023190:CDS |
| CGCTTCTTCTGGATTATCAA+CGG | 0.551847 | 4.3:-18594038 | None:intergenic |
| ACAGAGCTCCGTATTTAGCC+TGG | 0.556395 | 4.3:-18594278 | None:intergenic |
| AAAATATGGGATCATGCTGC+TGG | 0.556471 | 4.3:+18594354 | MS.gene023190:CDS |
| GGATTCAGGGGATCTTCGTA+AGG | 0.557759 | 4.3:+18593433 | MS.gene023190:intron |
| ACCAGTCAGAATTGACAGCC+AGG | 0.567872 | 4.3:+18594260 | MS.gene023190:CDS |
| TTAACTGCTCTCAAAAGTGA+AGG | 0.568631 | 4.3:-18596135 | None:intergenic |
| ATTGATAATGGTAAGTCTGA+AGG | 0.577108 | 4.3:+18593566 | MS.gene023190:CDS |
| TTTCACGGTATCCTTTGTTG+GGG | 0.579406 | 4.3:-18594332 | None:intergenic |
| ATCTAGCAGAGCTAATGCTA+TGG | 0.585894 | 4.3:-18593757 | None:intergenic |
| TTCAATGTCGTCTTACGACA+AGG | 0.587964 | 4.3:+18592846 | None:intergenic |
| GGTATTGTCTCAGATGCTGC+CGG | 0.589379 | 4.3:+18596036 | MS.gene023190:CDS |
| TGGCTGTCAATTCTGACTGG+TGG | 0.591754 | 4.3:-18594258 | None:intergenic |
| ACATATATGCAAGCATTGGA+TGG | 0.592693 | 4.3:+18593906 | MS.gene023190:CDS |
| AGCTCTGTCCAGAGGAGACG+GGG | 0.593560 | 4.3:+18594293 | MS.gene023190:CDS |
| CATTAGCTCTGCTAGATCAA+GGG | 0.596216 | 4.3:+18593763 | MS.gene023190:CDS |
| GGGGATCTTCGTAAGGAAAG+TGG | 0.596819 | 4.3:+18593440 | MS.gene023190:CDS |
| TATTTGCGTTTCCCCAACAA+AGG | 0.603160 | 4.3:+18594321 | MS.gene023190:CDS |
| TCACTTCATGAACAGAAACT+CGG | 0.609428 | 4.3:+18594225 | MS.gene023190:intron |
| TAAACTCTATTAGGATTCAG+GGG | 0.620644 | 4.3:+18593421 | MS.gene023190:intron |
| CAAAACCCAGTGTCGACCAA+AGG | 0.623188 | 4.3:-18593594 | None:intergenic |
| GATAATGGTAAGTCTGAAGG+TGG | 0.649049 | 4.3:+18593569 | MS.gene023190:CDS |
| TGCGCTTGACGGATATCACA+AGG | 0.658698 | 4.3:-18596184 | None:intergenic |
| GCTGGCTGTATTGTTGTGAG+CGG | 0.674925 | 4.3:+18594372 | MS.gene023190:CDS |
| AAATACGGAGCTCTGTCCAG+AGG | 0.680232 | 4.3:+18594285 | MS.gene023190:CDS |
| TGTACTTCTACAGAAGCTGG+AGG | 0.680394 | 4.3:+18596015 | MS.gene023190:intron |
| TTATGGCTAATGGTTGCCAG+TGG | 0.725118 | 4.3:-18593822 | None:intergenic |
| ACTTCATGAACAGAAACTCG+GGG | 0.737878 | 4.3:+18594227 | MS.gene023190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTTTACATAATTTA+AGG | + | chr4.3:18595233-18595252 | MS.gene023190:intron | 10.0% |
| !! | TTAAAAAAAAACAGTTAAAT+GGG | + | chr4.3:18595029-18595048 | MS.gene023190:intron | 10.0% |
| !!! | TATTTTATTATTAATCCTTT+TGG | + | chr4.3:18592961-18592980 | MS.gene023190:intron | 10.0% |
| !! | AAGACAAAAATAATGATAAA+GGG | - | chr4.3:18594158-18594177 | None:intergenic | 15.0% |
| !! | GTTAAAAAAAAACAGTTAAA+TGG | + | chr4.3:18595028-18595047 | MS.gene023190:intron | 15.0% |
| !! | TAAGACAAAAATAATGATAA+AGG | - | chr4.3:18594159-18594178 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTTAAGAGATTA+TGG | + | chr4.3:18593100-18593119 | MS.gene023190:intron | 15.0% |
| !!! | AATTGTTTTTAAGAGATTAT+GGG | + | chr4.3:18593101-18593120 | MS.gene023190:intron | 15.0% |
| !!! | ACTTTTTCAAATTATTTTTC+TGG | + | chr4.3:18595265-18595284 | MS.gene023190:intron | 15.0% |
| !!! | TAACTTTTTTACAAATTTCT+TGG | + | chr4.3:18593359-18593378 | MS.gene023190:intron | 15.0% |
| !!! | TTAATTGATCAAAACATTTT+TGG | - | chr4.3:18595189-18595208 | None:intergenic | 15.0% |
| !! | AAAGAAAATCAAAATCCAAA+AGG | - | chr4.3:18592979-18592998 | None:intergenic | 20.0% |
| !! | AGACAAAAATAATGATAAAG+GGG | - | chr4.3:18594157-18594176 | None:intergenic | 20.0% |
| !! | CAAAGTATAGATTTATGTAT+GGG | + | chr4.3:18595080-18595099 | MS.gene023190:intron | 20.0% |
| !! | TAAACAATTGTAAGATTGTT+TGG | - | chr4.3:18593175-18593194 | None:intergenic | 20.0% |
| !! | TAAATATAGCAACATGTTAA+CGG | - | chr4.3:18595921-18595940 | None:intergenic | 20.0% |
| !! | TACATAAATCTATACTTTGA+TGG | - | chr4.3:18595079-18595098 | None:intergenic | 20.0% |
| !! | TATAAAGAAAATATGCCAAA+TGG | - | chr4.3:18595577-18595596 | None:intergenic | 20.0% |
| !! | TCAAAGTATAGATTTATGTA+TGG | + | chr4.3:18595079-18595098 | MS.gene023190:intron | 20.0% |
| !! | TTATAACTTATCAACAAAGA+AGG | - | chr4.3:18595370-18595389 | None:intergenic | 20.0% |
| !! | TTTAATCAAAAAGACATGAA+AGG | - | chr4.3:18594408-18594427 | None:intergenic | 20.0% |
| !!! | ATAGAACAATTTTCATAACA+AGG | - | chr4.3:18594560-18594579 | None:intergenic | 20.0% |
| !!! | TGTTTAAGATAACAAAATTC+AGG | - | chr4.3:18595469-18595488 | None:intergenic | 20.0% |
| ! | AAATTAAAGAAGAGCCAATA+AGG | - | chr4.3:18595436-18595455 | None:intergenic | 25.0% |
| ! | AAGGCTTATTGAAAGTTAAA+CGG | - | chr4.3:18595524-18595543 | None:intergenic | 25.0% |
| ! | ATTAGAAACAAAAGGTAGAT+GGG | + | chr4.3:18595626-18595645 | MS.gene023190:intron | 25.0% |
| ! | GACAAAAATAATGATAAAGG+GGG | - | chr4.3:18594156-18594175 | None:intergenic | 25.0% |
| ! | GCTAAATCATTAGAAACAAA+AGG | + | chr4.3:18595618-18595637 | MS.gene023190:intron | 25.0% |
| ! | TCCAAATAACTTAACCTATA+AGG | - | chr4.3:18595144-18595163 | None:intergenic | 25.0% |
| ! | TCCTTATAGGTTAAGTTATT+TGG | + | chr4.3:18595140-18595159 | MS.gene023190:intron | 25.0% |
| ! | TTAAACTCTATTAGGATTCA+GGG | + | chr4.3:18593420-18593439 | MS.gene023190:intron | 25.0% |
| ! | TTCAGTGTTTAAACTCTATT+AGG | + | chr4.3:18593412-18593431 | MS.gene023190:intron | 25.0% |
| ! | TTTAAACTCTATTAGGATTC+AGG | + | chr4.3:18593419-18593438 | MS.gene023190:intron | 25.0% |
| !! | AAAAAACAGTTAAATGGGTT+TGG | + | chr4.3:18595034-18595053 | MS.gene023190:intron | 25.0% |
| !! | AATGATTTTTAACACCTTGA+AGG | + | chr4.3:18595773-18595792 | MS.gene023190:intron | 25.0% |
| !! | ACATTGAAATTTGAAACAGA+TGG | + | chr4.3:18594836-18594855 | MS.gene023190:intron | 25.0% |
| !! | ATGATTTTTAACACCTTGAA+GGG | + | chr4.3:18595774-18595793 | MS.gene023190:intron | 25.0% |
| !! | GGTTTTCTATGATTTAAGTA+AGG | + | chr4.3:18595647-18595666 | MS.gene023190:intron | 25.0% |
| !! | TCATGAAGTGATAATGTTAA+AGG | - | chr4.3:18594216-18594235 | None:intergenic | 25.0% |
| !! | TTACCAAACATGATTCTTTT+GGG | - | chr4.3:18594613-18594632 | None:intergenic | 25.0% |
| !! | TTTACCAAACATGATTCTTT+TGG | - | chr4.3:18594614-18594633 | None:intergenic | 25.0% |
| !!! | CATTTGATGTTGTTGATTTA+GGG | - | chr4.3:18592934-18592953 | None:intergenic | 25.0% |
| !!! | TTTTCTTCAGAAAGTACAAA+AGG | + | chr4.3:18593003-18593022 | MS.gene023190:intron | 25.0% |
| !!! | TTTTTTTTAACGTGTTTGAG+TGG | - | chr4.3:18595019-18595038 | None:intergenic | 25.0% |
| AAACCCAAAAGAATCATGTT+TGG | + | chr4.3:18594607-18594626 | MS.gene023190:intron | 30.0% | |
| AAGATTAGAAGTAGAAGACA+CGG | - | chr4.3:18595967-18595986 | None:intergenic | 30.0% | |
| AAGGATACCGTGAAAAAATA+TGG | + | chr4.3:18594340-18594359 | MS.gene023190:CDS | 30.0% | |
| AAGTTAAAATTTCACCTCCT+CGG | - | chr4.3:18593345-18593364 | None:intergenic | 30.0% | |
| AAGTTTCTTGATGTTGATAC+TGG | + | chr4.3:18596084-18596103 | MS.gene023190:CDS | 30.0% | |
| ACTAATGAAAATGGTTGAGA+AGG | - | chr4.3:18593320-18593339 | None:intergenic | 30.0% | |
| ACTAGTTACTATACACCATT+TGG | + | chr4.3:18595559-18595578 | MS.gene023190:intron | 30.0% | |
| AGGATACCGTGAAAAAATAT+GGG | + | chr4.3:18594341-18594360 | MS.gene023190:CDS | 30.0% | |
| ATAATGATAAAGGGGGAAAA+TGG | - | chr4.3:18594149-18594168 | None:intergenic | 30.0% | |
| ATCCAATAGATGGTACTAAA+GGG | + | chr4.3:18593618-18593637 | MS.gene023190:CDS | 30.0% | |
| CATGCTTATTGAGAAAAGAT+GGG | - | chr4.3:18594480-18594499 | None:intergenic | 30.0% | |
| CATTAGAAACAAAAGGTAGA+TGG | + | chr4.3:18595625-18595644 | MS.gene023190:intron | 30.0% | |
| CATTCTTCTTCTAATGAAGT+TGG | + | chr4.3:18593852-18593871 | MS.gene023190:CDS | 30.0% | |
| CATTTGTGTAAGAGAACAAA+TGG | - | chr4.3:18595400-18595419 | None:intergenic | 30.0% | |
| GTTGATTACCAAATCCTTAT+TGG | + | chr4.3:18595419-18595438 | MS.gene023190:intron | 30.0% | |
| TAAACTCTATTAGGATTCAG+GGG | + | chr4.3:18593421-18593440 | MS.gene023190:intron | 30.0% | |
| TAGTAAAGAAGACATACTGA+AGG | - | chr4.3:18595543-18595562 | None:intergenic | 30.0% | |
| TGTAAGAGAACAAATGGAAA+TGG | - | chr4.3:18595394-18595413 | None:intergenic | 30.0% | |
| ! | AATGTTTCTATGCTTGAGAT+TGG | + | chr4.3:18595877-18595896 | MS.gene023190:intron | 30.0% |
| ! | GTCTCTTTTCAAATCCTTAT+AGG | + | chr4.3:18595127-18595146 | MS.gene023190:intron | 30.0% |
| ! | TGATAGTGCAGAAATTTATG+TGG | + | chr4.3:18595846-18595865 | MS.gene023190:intron | 30.0% |
| ! | TTGAAATTTGAAACAGATGG+TGG | + | chr4.3:18594839-18594858 | MS.gene023190:intron | 30.0% |
| ! | TTGTGTGATTTGTGTACATT+TGG | + | chr4.3:18593246-18593265 | MS.gene023190:intron | 30.0% |
| !! | ATTGATAATGGTAAGTCTGA+AGG | + | chr4.3:18593566-18593585 | MS.gene023190:CDS | 30.0% |
| !! | GCATTTGATGTTGTTGATTT+AGG | - | chr4.3:18592935-18592954 | None:intergenic | 30.0% |
| !! | GTGATTATTTTTCTAGACTC+TGG | + | chr4.3:18595717-18595736 | MS.gene023190:intron | 30.0% |
| !!! | CATGATCCCATATTTTTTCA+CGG | - | chr4.3:18594350-18594369 | None:intergenic | 30.0% |
| AAAGAAACAGTGGATAGTGT+CGG | + | chr4.3:18594946-18594965 | MS.gene023190:intron | 35.0% | |
| AACAACAGATGATGTGCTTA+AGG | + | chr4.3:18593541-18593560 | MS.gene023190:CDS | 35.0% | |
| AAGAAGAGCCAATAAGGATT+TGG | - | chr4.3:18595430-18595449 | None:intergenic | 35.0% | |
| AATGATACTCTCGCTAATGA+AGG | + | chr4.3:18593497-18593516 | MS.gene023190:CDS | 35.0% | |
| AATTGTACTTCTACAGAAGC+TGG | + | chr4.3:18596012-18596031 | MS.gene023190:intron | 35.0% | |
| AGATCAAGGGAAAGTTGTAT+TGG | + | chr4.3:18593776-18593795 | MS.gene023190:CDS | 35.0% | |
| AGCTAGTGTGTTCAAGAAAT+TGG | + | chr4.3:18594454-18594473 | MS.gene023190:intron | 35.0% | |
| ATATGTTCCATTGCCAACTT+TGG | - | chr4.3:18593892-18593911 | None:intergenic | 35.0% | |
| ATTGAAAGTTAAACGGAGAG+TGG | - | chr4.3:18595517-18595536 | None:intergenic | 35.0% | |
| CTCCTCTTACAAACCTATAA+CGG | - | chr4.3:18593728-18593747 | None:intergenic | 35.0% | |
| CTTTCAAGAAAACAAGTGTC+AGG | + | chr4.3:18595809-18595828 | MS.gene023190:intron | 35.0% | |
| GAAAGTTGTATTGGGTGTAT+TGG | + | chr4.3:18593785-18593804 | MS.gene023190:CDS | 35.0% | |
| GATCAAGGGAAAGTTGTATT+GGG | + | chr4.3:18593777-18593796 | MS.gene023190:CDS | 35.0% | |
| GATCCAATAGATGGTACTAA+AGG | + | chr4.3:18593617-18593636 | MS.gene023190:CDS | 35.0% | |
| GCATGCTTATTGAGAAAAGA+TGG | - | chr4.3:18594481-18594500 | None:intergenic | 35.0% | |
| GTATAGATTTATGTATGGGC+TGG | + | chr4.3:18595084-18595103 | MS.gene023190:intron | 35.0% | |
| GTGCTTAAGGCTATTGATAA+TGG | + | chr4.3:18593554-18593573 | MS.gene023190:CDS | 35.0% | |
| TACCCTTTAGTACCATCTAT+TGG | - | chr4.3:18593623-18593642 | None:intergenic | 35.0% | |
| TCAAAAAATGACGCTTCTTC+TGG | - | chr4.3:18594052-18594071 | None:intergenic | 35.0% | |
| TCACTTCATGAACAGAAACT+CGG | + | chr4.3:18594225-18594244 | MS.gene023190:intron | 35.0% | |
| TGGAACATATATGCAAGCAT+TGG | + | chr4.3:18593902-18593921 | MS.gene023190:CDS | 35.0% | |
| TTAACTGCTCTCAAAAGTGA+AGG | - | chr4.3:18596138-18596157 | None:intergenic | 35.0% | |
| TTTGTGTACATTTGGTTGAC+AGG | + | chr4.3:18593254-18593273 | MS.gene023190:intron | 35.0% | |
| ! | AAATTTGAAACAGATGGTGG+AGG | + | chr4.3:18594842-18594861 | MS.gene023190:intron | 35.0% |
| ! | AAGAAGAATGCTGCTGATTA+TGG | - | chr4.3:18593842-18593861 | None:intergenic | 35.0% |
| ! | TGTCTTTTCTTTGCCAAAGT+TGG | + | chr4.3:18593876-18593895 | MS.gene023190:CDS | 35.0% |
| ! | TTTTCACGGTATCCTTTGTT+GGG | - | chr4.3:18594336-18594355 | None:intergenic | 35.0% |
| ! | TTTTTCACGGTATCCTTTGT+TGG | - | chr4.3:18594337-18594356 | None:intergenic | 35.0% |
| !! | AATTTGAAACAGATGGTGGA+GGG | + | chr4.3:18594843-18594862 | MS.gene023190:intron | 35.0% |
| !! | ACATATATGCAAGCATTGGA+TGG | + | chr4.3:18593906-18593925 | MS.gene023190:CDS | 35.0% |
| !! | TTCCTTTTGAGAAGTCCAAA+GGG | - | chr4.3:18596065-18596084 | None:intergenic | 35.0% |
| !! | TTTCCTTTTGAGAAGTCCAA+AGG | - | chr4.3:18596066-18596085 | None:intergenic | 35.0% |
| !!! | TGTTTTGAGAAGTGAGAACA+CGG | + | chr4.3:18594696-18594715 | MS.gene023190:intron | 35.0% |
| AAAATATGGGATCATGCTGC+TGG | + | chr4.3:18594354-18594373 | MS.gene023190:CDS | 40.0% | |
| AACACACTAGCTGAAAGATG+GGG | - | chr4.3:18594446-18594465 | None:intergenic | 40.0% | |
| AACCAGACAAGTCCTAAATC+TGG | - | chr4.3:18594532-18594551 | None:intergenic | 40.0% | |
| AACCCTTTGGACTTCTCAAA+AGG | + | chr4.3:18596060-18596079 | MS.gene023190:CDS | 40.0% | |
| AAGAAACAGTGGATAGTGTC+GGG | + | chr4.3:18594947-18594966 | MS.gene023190:intron | 40.0% | |
| ACTTCACATGTAGAGTTCCT+TGG | - | chr4.3:18595331-18595350 | None:intergenic | 40.0% | |
| ACTTCATGAACAGAAACTCG+GGG | + | chr4.3:18594227-18594246 | MS.gene023190:intron | 40.0% | |
| AGAACACGGTTGAAAATGGA+TGG | + | chr4.3:18594710-18594729 | MS.gene023190:intron | 40.0% | |
| AGTGAGAACACGGTTGAAAA+TGG | + | chr4.3:18594706-18594725 | MS.gene023190:intron | 40.0% | |
| ATCTAGCAGAGCTAATGCTA+TGG | - | chr4.3:18593760-18593779 | None:intergenic | 40.0% | |
| ATTATGACCAATTGCCATCC+AGG | + | chr4.3:18594003-18594022 | MS.gene023190:intron | 40.0% | |
| ATTGACAGCCAGGCTAAATA+CGG | + | chr4.3:18594270-18594289 | MS.gene023190:CDS | 40.0% | |
| CACTTCATGAACAGAAACTC+GGG | + | chr4.3:18594226-18594245 | MS.gene023190:intron | 40.0% | |
| CGCTTCTTCTGGATTATCAA+CGG | - | chr4.3:18594041-18594060 | None:intergenic | 40.0% | |
| GAACACACTAGCTGAAAGAT+GGG | - | chr4.3:18594447-18594466 | None:intergenic | 40.0% | |
| GACGATAACGAACCAGATTT+AGG | + | chr4.3:18594517-18594536 | MS.gene023190:intron | 40.0% | |
| GAGCTAATGCTATGGCATAT+TGG | - | chr4.3:18593752-18593771 | None:intergenic | 40.0% | |
| GTGCAGAAATTTATGTGGCT+AGG | + | chr4.3:18595851-18595870 | MS.gene023190:intron | 40.0% | |
| TATTTGCGTTTCCCCAACAA+AGG | + | chr4.3:18594321-18594340 | MS.gene023190:CDS | 40.0% | |
| TCCTCGGCTACTAATGAAAA+TGG | - | chr4.3:18593329-18593348 | None:intergenic | 40.0% | |
| TGAACACACTAGCTGAAAGA+TGG | - | chr4.3:18594448-18594467 | None:intergenic | 40.0% | |
| TGCCGTTATAGGTTTGTAAG+AGG | + | chr4.3:18593723-18593742 | MS.gene023190:intron | 40.0% | |
| TTCTTTGCCAAAGTTGGCAA+TGG | + | chr4.3:18593882-18593901 | MS.gene023190:CDS | 40.0% | |
| TTTCACGGTATCCTTTGTTG+GGG | - | chr4.3:18594335-18594354 | None:intergenic | 40.0% | |
| ! | AACCAGATTTAGGACTTGTC+TGG | + | chr4.3:18594527-18594546 | MS.gene023190:intron | 40.0% |
| ! | ACCATTTTCATTAGTAGCCG+AGG | + | chr4.3:18593325-18593344 | MS.gene023190:CDS | 40.0% |
| ! | ATGCTGCTGATTATGGCTAA+TGG | - | chr4.3:18593835-18593854 | None:intergenic | 40.0% |
| ! | ATTTTCATTAGTAGCCGAGG+AGG | + | chr4.3:18593328-18593347 | MS.gene023190:CDS | 40.0% |
| ! | GAATCTAGAGTATGATGCCA+AGG | + | chr4.3:18595311-18595330 | MS.gene023190:intron | 40.0% |
| ! | GATAATGGTAAGTCTGAAGG+TGG | + | chr4.3:18593569-18593588 | MS.gene023190:CDS | 40.0% |
| ! | GATCTGCTGTGAAGTTGATT+TGG | + | chr4.3:18595669-18595688 | MS.gene023190:intron | 40.0% |
| ! | GCATTTTCTACTTCCCTTCA+AGG | - | chr4.3:18595790-18595809 | None:intergenic | 40.0% |
| ! | GGATGGTTCTACACAAACTA+AGG | + | chr4.3:18593923-18593942 | MS.gene023190:CDS | 40.0% |
| ! | TTTAGGGTTATTGACATGCC+TGG | - | chr4.3:18592918-18592937 | None:intergenic | 40.0% |
| !! | AAAGTGAAGGCATCAAGTTC+TGG | - | chr4.3:18596125-18596144 | None:intergenic | 40.0% |
| !! | CATTAGCTCTGCTAGATCAA+GGG | + | chr4.3:18593763-18593782 | MS.gene023190:CDS | 40.0% |
| !!! | CGGACTTGTTTTTACTGTAC+AGG | - | chr4.3:18595947-18595966 | None:intergenic | 40.0% |
| !!! | TGGGTTTTGGATCCAATAGA+TGG | + | chr4.3:18593608-18593627 | MS.gene023190:CDS | 40.0% |
| AAGTCTGAAGGTGGTTCCTT+TGG | + | chr4.3:18593578-18593597 | MS.gene023190:CDS | 45.0% | |
| ACAGATCGTAATGAGGGAAG+TGG | + | chr4.3:18594868-18594887 | MS.gene023190:intron | 45.0% | |
| ACATTCACCTGGATGGCAAT+TGG | - | chr4.3:18594013-18594032 | None:intergenic | 45.0% | |
| ACCACAAAGCCACAACAGTT+TGG | - | chr4.3:18595699-18595718 | None:intergenic | 45.0% | |
| AGGGTGACAGATCGTAATGA+GGG | + | chr4.3:18594862-18594881 | MS.gene023190:intron | 45.0% | |
| ATGGTTGCCAGTGGAAGATT+TGG | - | chr4.3:18593816-18593835 | None:intergenic | 45.0% | |
| CAACGGTACTAACATTCACC+TGG | - | chr4.3:18594024-18594043 | None:intergenic | 45.0% | |
| CATTTGGTTGACAGGTTCAC+AGG | + | chr4.3:18593262-18593281 | MS.gene023190:intron | 45.0% | |
| CCATAATCAGCAACAGTGAC+AGG | - | chr4.3:18593070-18593089 | None:intergenic | 45.0% | |
| GGTACTAACATTCACCTGGA+TGG | - | chr4.3:18594020-18594039 | None:intergenic | 45.0% | |
| TAGCTGAAAGATGGGGTGAA+AGG | - | chr4.3:18594439-18594458 | None:intergenic | 45.0% | |
| TCAGGCAACGAAAGAAACAG+TGG | + | chr4.3:18594936-18594955 | MS.gene023190:intron | 45.0% | |
| TCTTCGTAAGGAAAGTGGTC+AGG | + | chr4.3:18593445-18593464 | MS.gene023190:CDS | 45.0% | |
| TGAGAAGTCCAAAGGGTTTC+CGG | - | chr4.3:18596058-18596077 | None:intergenic | 45.0% | |
| TGCTTGTCTGATGCCGTTAT+AGG | + | chr4.3:18593712-18593731 | MS.gene023190:intron | 45.0% | |
| TGGTCATAATGCAACTGTCG+AGG | - | chr4.3:18593993-18594012 | None:intergenic | 45.0% | |
| TGTACTTCTACAGAAGCTGG+AGG | + | chr4.3:18596015-18596034 | MS.gene023190:intron | 45.0% | |
| TTATGGCTAATGGTTGCCAG+TGG | - | chr4.3:18593825-18593844 | None:intergenic | 45.0% | |
| TTTGAGTGGCTGTGTTATCG+CGG | - | chr4.3:18595005-18595024 | None:intergenic | 45.0% | |
| ! | ACCAAACTGTTGTGGCTTTG+TGG | + | chr4.3:18595695-18595714 | MS.gene023190:intron | 45.0% |
| ! | ATGGTAGTGACTAGTGATGG+AGG | + | chr4.3:18594910-18594929 | MS.gene023190:intron | 45.0% |
| ! | CCTGTCACTGTTGCTGATTA+TGG | + | chr4.3:18593067-18593086 | MS.gene023190:CDS | 45.0% |
| ! | CTGGAGCTAGTTTAGTGTCT+TGG | + | chr4.3:18595736-18595755 | MS.gene023190:intron | 45.0% |
| ! | GTGATGGTAGTGACTAGTGA+TGG | + | chr4.3:18594907-18594926 | MS.gene023190:intron | 45.0% |
| ! | TGGTAGTGACTAGTGATGGA+GGG | + | chr4.3:18594911-18594930 | MS.gene023190:intron | 45.0% |
| ! | TTTGGAGCACCAAACTGTTG+TGG | + | chr4.3:18595687-18595706 | MS.gene023190:intron | 45.0% |
| !! | CAGTGACAGTAGAAGGTGTT+GGG | + | chr4.3:18594976-18594995 | MS.gene023190:intron | 45.0% |
| !! | GCATTAGCTCTGCTAGATCA+AGG | + | chr4.3:18593762-18593781 | MS.gene023190:CDS | 45.0% |
| !! | GCGGAAATGGTGGATGTTAT+AGG | + | chr4.3:18594813-18594832 | MS.gene023190:intron | 45.0% |
| AAATACGGAGCTCTGTCCAG+AGG | + | chr4.3:18594285-18594304 | MS.gene023190:CDS | 50.0% | |
| ACAGAGCTCCGTATTTAGCC+TGG | - | chr4.3:18594281-18594300 | None:intergenic | 50.0% | |
| ACCAGTCAGAATTGACAGCC+AGG | + | chr4.3:18594260-18594279 | MS.gene023190:CDS | 50.0% | |
| AGACAGCAATGGAGGCTGTT+GGG | + | chr4.3:18594771-18594790 | MS.gene023190:intron | 50.0% | |
| ATATATAGCCCCGTCTCCTC+TGG | - | chr4.3:18594304-18594323 | None:intergenic | 50.0% | |
| ATGGATGGTGACAGCAGCAA+TGG | + | chr4.3:18594725-18594744 | MS.gene023190:intron | 50.0% | |
| GAGGGTGACAGATCGTAATG+AGG | + | chr4.3:18594861-18594880 | MS.gene023190:intron | 50.0% | |
| GATCGTAATGAGGGAAGTGG+TGG | + | chr4.3:18594871-18594890 | MS.gene023190:intron | 50.0% | |
| GCTGGCTGTATTGTTGTGAG+CGG | + | chr4.3:18594372-18594391 | MS.gene023190:CDS | 50.0% | |
| GGATTCAGGGGATCTTCGTA+AGG | + | chr4.3:18593433-18593452 | MS.gene023190:intron | 50.0% | |
| GGCTTGTCCAAATCTTCCAC+TGG | + | chr4.3:18593806-18593825 | MS.gene023190:CDS | 50.0% | |
| GGGGATCTTCGTAAGGAAAG+TGG | + | chr4.3:18593440-18593459 | MS.gene023190:CDS | 50.0% | |
| GGTATTGTCTCAGATGCTGC+CGG | + | chr4.3:18596036-18596055 | MS.gene023190:CDS | 50.0% | |
| GTTGACAGGTTCACAGGTCT+TGG | + | chr4.3:18593268-18593287 | MS.gene023190:intron | 50.0% | |
| TGGCTGTCAATTCTGACTGG+TGG | - | chr4.3:18594261-18594280 | None:intergenic | 50.0% | |
| TGGTTCCTTTGGTCGACACT+GGG | + | chr4.3:18593589-18593608 | MS.gene023190:CDS | 50.0% | |
| TGTTGGGCAGCATAGGTTGT+CGG | + | chr4.3:18594787-18594806 | MS.gene023190:intron | 50.0% | |
| ! | CTTTGGTCGACACTGGGTTT+TGG | + | chr4.3:18593595-18593614 | MS.gene023190:CDS | 50.0% |
| ! | GCAGTGACAGTAGAAGGTGT+TGG | + | chr4.3:18594975-18594994 | MS.gene023190:intron | 50.0% |
| ! | GTACTGGCAGTGACAGTAGA+AGG | + | chr4.3:18594969-18594988 | MS.gene023190:intron | 50.0% |
| !! | CAAAACCCAGTGTCGACCAA+AGG | - | chr4.3:18593597-18593616 | None:intergenic | 50.0% |
| !! | TGGAGAGTGTTGGGAAGTGA+TGG | + | chr4.3:18594891-18594910 | MS.gene023190:intron | 50.0% |
| AGATGCTGCCGGAAACCCTT+TGG | + | chr4.3:18596047-18596066 | MS.gene023190:CDS | 55.0% | |
| GAGACAGCAATGGAGGCTGT+TGG | + | chr4.3:18594770-18594789 | MS.gene023190:intron | 55.0% | |
| GCCTGGCTGTCAATTCTGAC+TGG | - | chr4.3:18594264-18594283 | None:intergenic | 55.0% | |
| GGAAGTCGAGACAGCAATGG+AGG | + | chr4.3:18594763-18594782 | MS.gene023190:intron | 55.0% | |
| GTGACAGCAGCAATGGTGAG+TGG | + | chr4.3:18594732-18594751 | MS.gene023190:intron | 55.0% | |
| GTGGTTCCTTTGGTCGACAC+TGG | + | chr4.3:18593588-18593607 | MS.gene023190:CDS | 55.0% | |
| GTTGGGCAGCATAGGTTGTC+GGG | + | chr4.3:18594788-18594807 | MS.gene023190:intron | 55.0% | |
| ! | AGGGAAGTGGTGGAGAGTGT+TGG | + | chr4.3:18594881-18594900 | MS.gene023190:intron | 55.0% |
| ! | CAGTGGATAGTGTCGGGTAC+TGG | + | chr4.3:18594953-18594972 | MS.gene023190:intron | 55.0% |
| !! | GACTAGTGATGGAGGGTGTC+AGG | + | chr4.3:18594918-18594937 | MS.gene023190:intron | 55.0% |
| !! | GGGAAGTGGTGGAGAGTGTT+GGG | + | chr4.3:18594882-18594901 | MS.gene023190:intron | 55.0% |
| AGCTCTGTCCAGAGGAGACG+GGG | + | chr4.3:18594293-18594312 | MS.gene023190:CDS | 60.0% | |
| CAATGGTGAGTGGTGCCTGG+CGG | + | chr4.3:18594742-18594761 | MS.gene023190:intron | 60.0% | |
| CAGCAATGGTGAGTGGTGCC+TGG | + | chr4.3:18594739-18594758 | MS.gene023190:intron | 60.0% | |
| CAGCATAGGTTGTCGGGTGG+CGG | + | chr4.3:18594794-18594813 | MS.gene023190:intron | 60.0% | |
| GAGCTCTGTCCAGAGGAGAC+GGG | + | chr4.3:18594292-18594311 | MS.gene023190:CDS | 60.0% | |
| GCAAAGACGAGCAGCGAGAG+TGG | - | chr4.3:18592896-18592915 | None:intergenic | 60.0% | |
| GGAGCTCTGTCCAGAGGAGA+CGG | + | chr4.3:18594291-18594310 | MS.gene023190:CDS | 60.0% | |
| GGCGGAAGTCGAGACAGCAA+TGG | + | chr4.3:18594760-18594779 | MS.gene023190:intron | 60.0% | |
| TCTCGCTGCTCGTCTTTGCC+AGG | + | chr4.3:18592897-18592916 | MS.gene023190:CDS | 60.0% | |
| TGGAGGCTGTTGGGCAGCAT+AGG | + | chr4.3:18594780-18594799 | MS.gene023190:intron | 60.0% | |
| TTGCTGTCTCGACTTCCGCC+AGG | - | chr4.3:18594760-18594779 | None:intergenic | 60.0% | |
| !! | AGGTTGTCGGGTGGCGGAAA+TGG | + | chr4.3:18594800-18594819 | MS.gene023190:intron | 60.0% |
| !! | TTGTCGGGTGGCGGAAATGG+TGG | + | chr4.3:18594803-18594822 | MS.gene023190:intron | 60.0% |
| GGGCAGCATAGGTTGTCGGG+TGG | + | chr4.3:18594791-18594810 | MS.gene023190:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 18592850 | 18596191 | 18592850 | ID=MS.gene023190 |
| chr4.3 | mRNA | 18592850 | 18596191 | 18592850 | ID=MS.gene023190.t1;Parent=MS.gene023190 |
| chr4.3 | exon | 18592850 | 18592922 | 18592850 | ID=MS.gene023190.t1.exon1;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18592850 | 18592922 | 18592850 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18593017 | 18593088 | 18593017 | ID=MS.gene023190.t1.exon2;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18593017 | 18593088 | 18593017 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18593276 | 18593349 | 18593276 | ID=MS.gene023190.t1.exon3;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18593276 | 18593349 | 18593276 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18593434 | 18593639 | 18593434 | ID=MS.gene023190.t1.exon4;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18593434 | 18593639 | 18593434 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18593734 | 18593944 | 18593734 | ID=MS.gene023190.t1.exon5;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18593734 | 18593944 | 18593734 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18594025 | 18594123 | 18594025 | ID=MS.gene023190.t1.exon6;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18594025 | 18594123 | 18594025 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18594240 | 18594393 | 18594240 | ID=MS.gene023190.t1.exon7;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18594240 | 18594393 | 18594240 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| chr4.3 | exon | 18596028 | 18596191 | 18596028 | ID=MS.gene023190.t1.exon8;Parent=MS.gene023190.t1 |
| chr4.3 | CDS | 18596028 | 18596191 | 18596028 | ID=cds.MS.gene023190.t1;Parent=MS.gene023190.t1 |
| Gene Sequence |
| Protein sequence |
