Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35178.t1 | XP_004504666.1 | 93.4 | 347 | 23 | 0 | 4 | 350 | 54 | 400 | 7.60E-177 | 629.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35178.t1 | Q42546 | 71.0 | 352 | 98 | 3 | 3 | 350 | 2 | 353 | 1.9e-131 | 470.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35178.t1 | A0A1S2YGY7 | 93.4 | 347 | 23 | 0 | 4 | 350 | 54 | 400 | 5.5e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35178 | MS.gene046100 | PPI |
| MS.gene01364 | MS.gene35178 | PPI |
| MS.gene01334 | MS.gene35178 | PPI |
| MS.gene01773 | MS.gene35178 | PPI |
| MS.gene002387 | MS.gene35178 | PPI |
| MS.gene047523 | MS.gene35178 | PPI |
| MS.gene01744 | MS.gene35178 | PPI |
| MS.gene070607 | MS.gene35178 | PPI |
| MS.gene29934 | MS.gene35178 | PPI |
| MS.gene02315 | MS.gene35178 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35178.t1 | MTR_4g094672 | 94.167 | 240 | 14 | 0 | 57 | 296 | 1 | 240 | 2.20e-169 | 472 |
| MS.gene35178.t1 | MTR_8g464260 | 42.276 | 369 | 185 | 6 | 4 | 344 | 6 | 374 | 7.33e-93 | 282 |
| MS.gene35178.t1 | MTR_2g012510 | 44.068 | 354 | 164 | 7 | 4 | 325 | 91 | 442 | 3.98e-91 | 280 |
| MS.gene35178.t1 | MTR_4g090525 | 37.429 | 350 | 186 | 8 | 4 | 325 | 82 | 426 | 1.22e-62 | 206 |
| MS.gene35178.t1 | MTR_2g011680 | 32.708 | 373 | 208 | 12 | 2 | 342 | 47 | 408 | 1.18e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35178.t1 | AT5G63980 | 76.989 | 352 | 77 | 3 | 3 | 350 | 2 | 353 | 0.0 | 533 |
| MS.gene35178.t1 | AT5G63990 | 62.209 | 344 | 125 | 3 | 3 | 344 | 2 | 342 | 7.63e-151 | 429 |
| MS.gene35178.t1 | AT5G64000 | 63.478 | 345 | 122 | 2 | 3 | 346 | 2 | 343 | 2.21e-149 | 425 |
| MS.gene35178.t1 | AT5G09290 | 59.710 | 345 | 125 | 4 | 4 | 346 | 3 | 335 | 9.81e-147 | 418 |
| MS.gene35178.t1 | AT5G63990 | 61.149 | 296 | 110 | 3 | 3 | 296 | 2 | 294 | 7.68e-125 | 360 |
| MS.gene35178.t1 | AT5G64000 | 61.538 | 299 | 111 | 2 | 49 | 346 | 5 | 300 | 8.29e-124 | 358 |
| MS.gene35178.t1 | AT5G54390 | 42.192 | 365 | 184 | 10 | 3 | 342 | 5 | 367 | 5.17e-85 | 262 |
| MS.gene35178.t1 | AT4G05090 | 32.967 | 364 | 201 | 12 | 2 | 339 | 44 | 390 | 2.41e-43 | 154 |
| MS.gene35178.t1 | AT4G05090 | 29.396 | 364 | 182 | 11 | 2 | 339 | 44 | 358 | 7.19e-34 | 128 |
Find 76 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAACTCTATTAGGATTC+AGG | 0.211302 | 4.4:+19072552 | MS.gene35178:intron |
| CGTTGGTCGACACTGGGTTT+TGG | 0.242248 | 4.4:+19072728 | MS.gene35178:CDS |
| TGAGAAGTCCAAAGGGTTTC+CGG | 0.253320 | 4.4:-19075186 | None:intergenic |
| AAGAAGAATGCTGCTGATTA+TGG | 0.294931 | 4.4:-19072972 | None:intergenic |
| TCCTCGGCTACTAATGAAAA+TGG | 0.299974 | 4.4:-19072459 | None:intergenic |
| CCTGTCACTGTTGCTGATTA+TGG | 0.316799 | 4.4:+19072200 | MS.gene35178:CDS |
| ATGGTTGCCAGTGGAAGATT+TGG | 0.329719 | 4.4:-19072946 | None:intergenic |
| AAAGTGAAGGCATCAAGTTC+TGG | 0.341094 | 4.4:-19075253 | None:intergenic |
| TACCCTTTAGTACCATCTAT+TGG | 0.348231 | 4.4:-19072753 | None:intergenic |
| AAGTTTCTTGATGTTGATAC+TGG | 0.362764 | 4.4:+19075215 | MS.gene35178:CDS |
| GTGGTTCCGTTGGTCGACAC+TGG | 0.374689 | 4.4:+19072721 | MS.gene35178:CDS |
| GTTGACAGGTTCACAGGTCT+TGG | 0.380007 | 4.4:+19072401 | MS.gene35178:intron |
| GAAAGTTGTATTGGGTGTAT+TGG | 0.382393 | 4.4:+19072918 | MS.gene35178:CDS |
| AACAACAGATGATGTGCTTA+AGG | 0.386211 | 4.4:+19072674 | MS.gene35178:CDS |
| ATATATAGCCCCGTCTCCTC+TGG | 0.394658 | 4.4:-19073434 | None:intergenic |
| ATATGTTCCATTGCCAACTT+TGG | 0.422006 | 4.4:-19073022 | None:intergenic |
| AGATGCTGCCGGAAACCCTT+TGG | 0.422474 | 4.4:+19075178 | MS.gene35178:CDS |
| GAGCTAATGCTATGGCATAT+TGG | 0.422687 | 4.4:-19072882 | None:intergenic |
| CATTCTTCTTCTAATGAAGT+TGG | 0.427695 | 4.4:+19072985 | MS.gene35178:CDS |
| TCTCGCTGCTCGTCTTTGCC+AGG | 0.427962 | 4.4:+19072030 | MS.gene35178:CDS |
| AGATCAAGGGAAAGTTGTAT+TGG | 0.434380 | 4.4:+19072909 | MS.gene35178:CDS |
| CATTTGGTTGACAGGTTCAC+AGG | 0.441171 | 4.4:+19072395 | MS.gene35178:intron |
| AACCCTTTGGACTTCTCAAA+AGG | 0.444660 | 4.4:+19075191 | MS.gene35178:CDS |
| GTGCTTAAGGCTATTGATAA+TGG | 0.450269 | 4.4:+19072687 | MS.gene35178:CDS |
| GATCCAATAGATGGTACTAA+AGG | 0.456630 | 4.4:+19072750 | MS.gene35178:CDS |
| GGATGGTTCTACACAAACTA+AGG | 0.458730 | 4.4:+19073056 | MS.gene35178:CDS |
| TTAAACTCTATTAGGATTCA+GGG | 0.465154 | 4.4:+19072553 | MS.gene35178:intron |
| ATGCTGCTGATTATGGCTAA+TGG | 0.472819 | 4.4:-19072965 | None:intergenic |
| TTCTTTGCCAAAGTTGGCAA+TGG | 0.475551 | 4.4:+19073015 | MS.gene35178:CDS |
| TGCCGTTATAGGTTTGTAAG+AGG | 0.478049 | 4.4:+19072856 | MS.gene35178:intron |
| GCATTAGCTCTGCTAGATCA+AGG | 0.483237 | 4.4:+19072895 | MS.gene35178:CDS |
| GATCAAGGGAAAGTTGTATT+GGG | 0.494154 | 4.4:+19072910 | MS.gene35178:CDS |
| GAGCTCTGTCCAGAGGAGAC+GGG | 0.503558 | 4.4:+19073425 | MS.gene35178:CDS |
| ATCCAATAGATGGTACTAAA+GGG | 0.503600 | 4.4:+19072751 | MS.gene35178:CDS |
| GCCTGGCTGTCAATTCTGAC+TGG | 0.506783 | 4.4:-19073394 | None:intergenic |
| TGGTTCCGTTGGTCGACACT+GGG | 0.508761 | 4.4:+19072722 | MS.gene35178:CDS |
| GGCTTGTCCAAATCTTCCAC+TGG | 0.511392 | 4.4:+19072939 | MS.gene35178:CDS |
| ATTGACAGCCAGGCTAAATA+CGG | 0.513091 | 4.4:+19073403 | MS.gene35178:CDS |
| TTTAGGGTTATTGACATGCC+TGG | 0.513177 | 4.4:-19072048 | None:intergenic |
| CCATAATCAGCAACAGTGAC+AGG | 0.514252 | 4.4:-19072200 | None:intergenic |
| GCAAAGACGAGCAGCGAGAG+TGG | 0.515405 | 4.4:-19072026 | None:intergenic |
| TGGAACATATATGCAAGCAT+TGG | 0.519175 | 4.4:+19073035 | MS.gene35178:CDS |
| AAGTTAAAATTTCACCTCCT+CGG | 0.521505 | 4.4:-19072475 | None:intergenic |
| TCTTCGTAAGGAAAGTGGTC+AGG | 0.526988 | 4.4:+19072578 | MS.gene35178:CDS |
| GGAGCTCTGTCCAGAGGAGA+CGG | 0.527942 | 4.4:+19073424 | MS.gene35178:CDS |
| CACTTCATGAACAGAAACTC+GGG | 0.528428 | 4.4:+19073359 | MS.gene35178:intron |
| ACTAATGAAAATGGTTGAGA+AGG | 0.531083 | 4.4:-19072450 | None:intergenic |
| AATGATACTCTCGCTAATGA+AGG | 0.531200 | 4.4:+19072630 | MS.gene35178:CDS |
| CGCTTCTTCTGGATTATCAA+CGG | 0.551847 | 4.4:-19073171 | None:intergenic |
| ACAGAGCTCCGTATTTAGCC+TGG | 0.556395 | 4.4:-19073411 | None:intergenic |
| AAAATATGGGATCATGCTGC+TGG | 0.556471 | 4.4:+19073487 | MS.gene35178:CDS |
| GGATTCAGGGGATCTTCGTA+AGG | 0.557759 | 4.4:+19072566 | MS.gene35178:intron |
| ACCAGTCAGAATTGACAGCC+AGG | 0.567872 | 4.4:+19073393 | MS.gene35178:CDS |
| TTAACTGCTCTCAAAAGTGA+AGG | 0.568631 | 4.4:-19075266 | None:intergenic |
| ATTGATAATGGTAAGTCTGA+AGG | 0.577108 | 4.4:+19072699 | MS.gene35178:CDS |
| TTTCACGGTATCCTTTGTTG+GGG | 0.579406 | 4.4:-19073465 | None:intergenic |
| ATCTAGCAGAGCTAATGCTA+TGG | 0.585894 | 4.4:-19072890 | None:intergenic |
| TTCAATGTCGTCTTACGACA+AGG | 0.587964 | 4.4:+19071979 | None:intergenic |
| GGTATTGTCTCAGATGCTGC+CGG | 0.589379 | 4.4:+19075167 | MS.gene35178:CDS |
| AAGTCTGAAGGTGGTTCCGT+TGG | 0.589934 | 4.4:+19072711 | MS.gene35178:CDS |
| TGGCTGTCAATTCTGACTGG+TGG | 0.591754 | 4.4:-19073391 | None:intergenic |
| ACATATATGCAAGCATTGGA+TGG | 0.592693 | 4.4:+19073039 | MS.gene35178:CDS |
| AGCTCTGTCCAGAGGAGACG+GGG | 0.593560 | 4.4:+19073426 | MS.gene35178:CDS |
| CATTAGCTCTGCTAGATCAA+GGG | 0.596216 | 4.4:+19072896 | MS.gene35178:CDS |
| GGGGATCTTCGTAAGGAAAG+TGG | 0.596819 | 4.4:+19072573 | MS.gene35178:CDS |
| TATTTGCGTTTCCCCAACAA+AGG | 0.603160 | 4.4:+19073454 | MS.gene35178:CDS |
| TCACTTCATGAACAGAAACT+CGG | 0.609428 | 4.4:+19073358 | MS.gene35178:intron |
| TAAACTCTATTAGGATTCAG+GGG | 0.620644 | 4.4:+19072554 | MS.gene35178:intron |
| CAAAACCCAGTGTCGACCAA+CGG | 0.625868 | 4.4:-19072727 | None:intergenic |
| GATAATGGTAAGTCTGAAGG+TGG | 0.649049 | 4.4:+19072702 | MS.gene35178:CDS |
| TGCGCTTGACGGATATCACA+AGG | 0.658698 | 4.4:-19075315 | None:intergenic |
| GCTGGCTGTATTGTTGTGAG+CGG | 0.674925 | 4.4:+19073505 | MS.gene35178:CDS |
| AAATACGGAGCTCTGTCCAG+AGG | 0.680232 | 4.4:+19073418 | MS.gene35178:CDS |
| TGTACTTCTACAGAAGCTGG+AGG | 0.680394 | 4.4:+19075146 | MS.gene35178:intron |
| TTATGGCTAATGGTTGCCAG+TGG | 0.725118 | 4.4:-19072955 | None:intergenic |
| ACTTCATGAACAGAAACTCG+GGG | 0.737878 | 4.4:+19073360 | MS.gene35178:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTTTACATAATTTA+AGG | + | chr4.4:19074364-19074383 | MS.gene35178:intron | 10.0% |
| !! | TTAAAAAAAAACAGTTAAAT+GGG | + | chr4.4:19074160-19074179 | MS.gene35178:intron | 10.0% |
| !!! | TATTTTATTATTAATCCTTT+TGG | + | chr4.4:19072094-19072113 | MS.gene35178:intron | 10.0% |
| !! | AAGACAAAAATAATGATAAA+GGG | - | chr4.4:19073291-19073310 | None:intergenic | 15.0% |
| !! | GTTAAAAAAAAACAGTTAAA+TGG | + | chr4.4:19074159-19074178 | MS.gene35178:intron | 15.0% |
| !! | TAAGACAAAAATAATGATAA+AGG | - | chr4.4:19073292-19073311 | None:intergenic | 15.0% |
| !!! | AAATTGTTTTTAAGAGATTA+TGG | + | chr4.4:19072233-19072252 | MS.gene35178:intron | 15.0% |
| !!! | AATTGTTTTTAAGAGATTAT+GGG | + | chr4.4:19072234-19072253 | MS.gene35178:intron | 15.0% |
| !!! | ACTTTTTCAAATTATTTTTC+TGG | + | chr4.4:19074396-19074415 | MS.gene35178:intron | 15.0% |
| !!! | TAACTTTTTTACAAATTTCT+TGG | + | chr4.4:19072492-19072511 | MS.gene35178:intron | 15.0% |
| !!! | TTAATTGATCAAAACATTTT+TGG | - | chr4.4:19074320-19074339 | None:intergenic | 15.0% |
| !! | AAAGAAAATCAAAATCCAAA+AGG | - | chr4.4:19072112-19072131 | None:intergenic | 20.0% |
| !! | AAATTAAAGAAGAACCAATA+AGG | - | chr4.4:19074567-19074586 | None:intergenic | 20.0% |
| !! | AGACAAAAATAATGATAAAG+GGG | - | chr4.4:19073290-19073309 | None:intergenic | 20.0% |
| !! | CAAAGTATAGATTTATGTAT+GGG | + | chr4.4:19074211-19074230 | MS.gene35178:intron | 20.0% |
| !! | TAAATATAGCAACATGTTAA+CGG | - | chr4.4:19075052-19075071 | None:intergenic | 20.0% |
| !! | TACATAAATCTATACTTTGA+TGG | - | chr4.4:19074210-19074229 | None:intergenic | 20.0% |
| !! | TATAAAGAAAATATGCCAAA+TGG | - | chr4.4:19074708-19074727 | None:intergenic | 20.0% |
| !! | TCAAAGTATAGATTTATGTA+TGG | + | chr4.4:19074210-19074229 | MS.gene35178:intron | 20.0% |
| !! | TTATAACTTATCAACAAAGA+AGG | - | chr4.4:19074501-19074520 | None:intergenic | 20.0% |
| !! | TTTAATCAAAAAGACATGAA+AGG | - | chr4.4:19073541-19073560 | None:intergenic | 20.0% |
| !!! | ATAGAACAATTTTCATAACA+AGG | - | chr4.4:19073691-19073710 | None:intergenic | 20.0% |
| !!! | TGTTTAAGATAACAAAATTC+AGG | - | chr4.4:19074600-19074619 | None:intergenic | 20.0% |
| ! | AAGGCTTATTGAAAGTTAAA+CGG | - | chr4.4:19074655-19074674 | None:intergenic | 25.0% |
| ! | ATTAGAAACAAAAGGTAGAT+GGG | + | chr4.4:19074757-19074776 | MS.gene35178:intron | 25.0% |
| ! | GACAAAAATAATGATAAAGG+GGG | - | chr4.4:19073289-19073308 | None:intergenic | 25.0% |
| ! | GCTAAATCATTAGAAACAAA+AGG | + | chr4.4:19074749-19074768 | MS.gene35178:intron | 25.0% |
| ! | TAAACAGTTGTAAGATTGTA+TGG | - | chr4.4:19072308-19072327 | None:intergenic | 25.0% |
| ! | TCCAAATAACTTAACCTATA+AGG | - | chr4.4:19074275-19074294 | None:intergenic | 25.0% |
| ! | TCCTTATAGGTTAAGTTATT+TGG | + | chr4.4:19074271-19074290 | MS.gene35178:intron | 25.0% |
| ! | TTAAACTCTATTAGGATTCA+GGG | + | chr4.4:19072553-19072572 | MS.gene35178:intron | 25.0% |
| ! | TTCAGTGTTTAAACTCTATT+AGG | + | chr4.4:19072545-19072564 | MS.gene35178:intron | 25.0% |
| ! | TTTAAACTCTATTAGGATTC+AGG | + | chr4.4:19072552-19072571 | MS.gene35178:intron | 25.0% |
| !! | AAAAAACAGTTAAATGGGTT+TGG | + | chr4.4:19074165-19074184 | MS.gene35178:intron | 25.0% |
| !! | AATGATTTTTAACACCTTGA+AGG | + | chr4.4:19074904-19074923 | MS.gene35178:intron | 25.0% |
| !! | ACATTGAAATTTGAAACAGA+TGG | + | chr4.4:19073967-19073986 | MS.gene35178:intron | 25.0% |
| !! | ATGATTTTTAACACCTTGAA+GGG | + | chr4.4:19074905-19074924 | MS.gene35178:intron | 25.0% |
| !! | GGTTTTCTATGATTTAAGTA+AGG | + | chr4.4:19074778-19074797 | MS.gene35178:intron | 25.0% |
| !! | TCATGAAGTGATAATGTTAA+AGG | - | chr4.4:19073349-19073368 | None:intergenic | 25.0% |
| !! | TTACCAAACATGATTCTTTT+GGG | - | chr4.4:19073744-19073763 | None:intergenic | 25.0% |
| !! | TTTACCAAACATGATTCTTT+TGG | - | chr4.4:19073745-19073764 | None:intergenic | 25.0% |
| !!! | CATTTGATGTTGTTGATTTA+GGG | - | chr4.4:19072067-19072086 | None:intergenic | 25.0% |
| !!! | TTTTCTTCAGAAAGTACAAA+AGG | + | chr4.4:19072136-19072155 | MS.gene35178:intron | 25.0% |
| !!! | TTTTTTTTAACGTGTTTGAG+TGG | - | chr4.4:19074150-19074169 | None:intergenic | 25.0% |
| AAACCCAAAAGAATCATGTT+TGG | + | chr4.4:19073738-19073757 | MS.gene35178:intron | 30.0% | |
| AAGAAGAACCAATAAGGATT+TGG | - | chr4.4:19074561-19074580 | None:intergenic | 30.0% | |
| AAGATTAGAAGTAGAAGACA+CGG | - | chr4.4:19075098-19075117 | None:intergenic | 30.0% | |
| AAGGATACCGTGAAAAAATA+TGG | + | chr4.4:19073473-19073492 | MS.gene35178:CDS | 30.0% | |
| AAGTTAAAATTTCACCTCCT+CGG | - | chr4.4:19072478-19072497 | None:intergenic | 30.0% | |
| AAGTTTCTTGATGTTGATAC+TGG | + | chr4.4:19075215-19075234 | MS.gene35178:CDS | 30.0% | |
| ACTAATGAAAATGGTTGAGA+AGG | - | chr4.4:19072453-19072472 | None:intergenic | 30.0% | |
| ACTAGTTACTATACACCATT+TGG | + | chr4.4:19074690-19074709 | MS.gene35178:intron | 30.0% | |
| AGGATACCGTGAAAAAATAT+GGG | + | chr4.4:19073474-19073493 | MS.gene35178:CDS | 30.0% | |
| ATAATGATAAAGGGGGAAAA+TGG | - | chr4.4:19073282-19073301 | None:intergenic | 30.0% | |
| ATCCAATAGATGGTACTAAA+GGG | + | chr4.4:19072751-19072770 | MS.gene35178:CDS | 30.0% | |
| CATGCTTATTGAGAAAAGAT+GGG | - | chr4.4:19073611-19073630 | None:intergenic | 30.0% | |
| CATTAGAAACAAAAGGTAGA+TGG | + | chr4.4:19074756-19074775 | MS.gene35178:intron | 30.0% | |
| CATTCTTCTTCTAATGAAGT+TGG | + | chr4.4:19072985-19073004 | MS.gene35178:CDS | 30.0% | |
| CATTTGTGTAAGAGAACAAA+TGG | - | chr4.4:19074531-19074550 | None:intergenic | 30.0% | |
| GATTCAGTATGTAAAGATCT+AGG | + | chr4.4:19074237-19074256 | MS.gene35178:intron | 30.0% | |
| GTTGATTACCAAATCCTTAT+TGG | + | chr4.4:19074550-19074569 | MS.gene35178:intron | 30.0% | |
| TAAACTCTATTAGGATTCAG+GGG | + | chr4.4:19072554-19072573 | MS.gene35178:intron | 30.0% | |
| TAGTAAAGAAGACATACTGA+AGG | - | chr4.4:19074674-19074693 | None:intergenic | 30.0% | |
| TGTAAGAGAACAAATGGAAA+TGG | - | chr4.4:19074525-19074544 | None:intergenic | 30.0% | |
| ! | AATGTTTCTATGCTTGAGAT+TGG | + | chr4.4:19075008-19075027 | MS.gene35178:intron | 30.0% |
| ! | TGATAGTGCAGAAATTTATG+TGG | + | chr4.4:19074977-19074996 | MS.gene35178:intron | 30.0% |
| ! | TTGAAATTTGAAACAGATGG+TGG | + | chr4.4:19073970-19073989 | MS.gene35178:intron | 30.0% |
| ! | TTGTGTGATTTGTGTACATT+TGG | + | chr4.4:19072379-19072398 | MS.gene35178:intron | 30.0% |
| !! | ATTGATAATGGTAAGTCTGA+AGG | + | chr4.4:19072699-19072718 | MS.gene35178:CDS | 30.0% |
| !! | GCATTTGATGTTGTTGATTT+AGG | - | chr4.4:19072068-19072087 | None:intergenic | 30.0% |
| !! | GTGATTATTTTTCTAGACTC+TGG | + | chr4.4:19074848-19074867 | MS.gene35178:intron | 30.0% |
| !!! | CATGATCCCATATTTTTTCA+CGG | - | chr4.4:19073483-19073502 | None:intergenic | 30.0% |
| AAAGAAACAGTGGATAGTGT+CGG | + | chr4.4:19074077-19074096 | MS.gene35178:intron | 35.0% | |
| AACAACAGATGATGTGCTTA+AGG | + | chr4.4:19072674-19072693 | MS.gene35178:CDS | 35.0% | |
| AATGATACTCTCGCTAATGA+AGG | + | chr4.4:19072630-19072649 | MS.gene35178:CDS | 35.0% | |
| AATTGTACTTCTACAGAAGC+TGG | + | chr4.4:19075143-19075162 | MS.gene35178:intron | 35.0% | |
| AGATCAAGGGAAAGTTGTAT+TGG | + | chr4.4:19072909-19072928 | MS.gene35178:CDS | 35.0% | |
| ATATGTTCCATTGCCAACTT+TGG | - | chr4.4:19073025-19073044 | None:intergenic | 35.0% | |
| ATTGAAAGTTAAACGGAGAG+TGG | - | chr4.4:19074648-19074667 | None:intergenic | 35.0% | |
| CTCCTCTTACAAACCTATAA+CGG | - | chr4.4:19072861-19072880 | None:intergenic | 35.0% | |
| CTTTCAAGAAAACAAGTGTC+AGG | + | chr4.4:19074940-19074959 | MS.gene35178:intron | 35.0% | |
| GAAAGTTGTATTGGGTGTAT+TGG | + | chr4.4:19072918-19072937 | MS.gene35178:CDS | 35.0% | |
| GATCAAGGGAAAGTTGTATT+GGG | + | chr4.4:19072910-19072929 | MS.gene35178:CDS | 35.0% | |
| GATCCAATAGATGGTACTAA+AGG | + | chr4.4:19072750-19072769 | MS.gene35178:CDS | 35.0% | |
| GCATGCTTATTGAGAAAAGA+TGG | - | chr4.4:19073612-19073631 | None:intergenic | 35.0% | |
| GTATAGATTTATGTATGGGC+TGG | + | chr4.4:19074215-19074234 | MS.gene35178:intron | 35.0% | |
| GTGCTTAAGGCTATTGATAA+TGG | + | chr4.4:19072687-19072706 | MS.gene35178:CDS | 35.0% | |
| TACCCTTTAGTACCATCTAT+TGG | - | chr4.4:19072756-19072775 | None:intergenic | 35.0% | |
| TCAAAAAATGACGCTTCTTC+TGG | - | chr4.4:19073185-19073204 | None:intergenic | 35.0% | |
| TCACTTCATGAACAGAAACT+CGG | + | chr4.4:19073358-19073377 | MS.gene35178:intron | 35.0% | |
| TCAGCTAGTGTTCAAGAAAT+TGG | + | chr4.4:19073585-19073604 | MS.gene35178:intron | 35.0% | |
| TGGAACATATATGCAAGCAT+TGG | + | chr4.4:19073035-19073054 | MS.gene35178:CDS | 35.0% | |
| TTAACTGCTCTCAAAAGTGA+AGG | - | chr4.4:19075269-19075288 | None:intergenic | 35.0% | |
| TTGAACACTAGCTGAAAGAT+GGG | - | chr4.4:19073580-19073599 | None:intergenic | 35.0% | |
| TTTGTGTACATTTGGTTGAC+AGG | + | chr4.4:19072387-19072406 | MS.gene35178:intron | 35.0% | |
| ! | AAATTTGAAACAGATGGTGG+AGG | + | chr4.4:19073973-19073992 | MS.gene35178:intron | 35.0% |
| ! | AAGAAGAATGCTGCTGATTA+TGG | - | chr4.4:19072975-19072994 | None:intergenic | 35.0% |
| ! | GCATTTTCTAATTCCCTTCA+AGG | - | chr4.4:19074921-19074940 | None:intergenic | 35.0% |
| ! | GGCTCTTTTCAAATCCTTAT+AGG | + | chr4.4:19074258-19074277 | MS.gene35178:intron | 35.0% |
| ! | TGTCTTTTCTTTGCCAAAGT+TGG | + | chr4.4:19073009-19073028 | MS.gene35178:CDS | 35.0% |
| ! | TTTTCACGGTATCCTTTGTT+GGG | - | chr4.4:19073469-19073488 | None:intergenic | 35.0% |
| ! | TTTTTCACGGTATCCTTTGT+TGG | - | chr4.4:19073470-19073489 | None:intergenic | 35.0% |
| !! | AATTTGAAACAGATGGTGGA+GGG | + | chr4.4:19073974-19073993 | MS.gene35178:intron | 35.0% |
| !! | ACATATATGCAAGCATTGGA+TGG | + | chr4.4:19073039-19073058 | MS.gene35178:CDS | 35.0% |
| !! | TTCCTTTTGAGAAGTCCAAA+GGG | - | chr4.4:19075196-19075215 | None:intergenic | 35.0% |
| !! | TTTCCTTTTGAGAAGTCCAA+AGG | - | chr4.4:19075197-19075216 | None:intergenic | 35.0% |
| !!! | TGTTTTGAGAAGTGAGAACA+CGG | + | chr4.4:19073827-19073846 | MS.gene35178:intron | 35.0% |
| AAAATATGGGATCATGCTGC+TGG | + | chr4.4:19073487-19073506 | MS.gene35178:CDS | 40.0% | |
| AACCAGACAAGTCCTAAATC+TGG | - | chr4.4:19073663-19073682 | None:intergenic | 40.0% | |
| AACCCTTTGGACTTCTCAAA+AGG | + | chr4.4:19075191-19075210 | MS.gene35178:CDS | 40.0% | |
| AAGAAACAGTGGATAGTGTC+GGG | + | chr4.4:19074078-19074097 | MS.gene35178:intron | 40.0% | |
| ACTTCACATGTAGAGTTCCT+TGG | - | chr4.4:19074462-19074481 | None:intergenic | 40.0% | |
| ACTTCATGAACAGAAACTCG+GGG | + | chr4.4:19073360-19073379 | MS.gene35178:intron | 40.0% | |
| AGAACACGGTTGAAAATGGA+TGG | + | chr4.4:19073841-19073860 | MS.gene35178:intron | 40.0% | |
| AGTGAGAACACGGTTGAAAA+TGG | + | chr4.4:19073837-19073856 | MS.gene35178:intron | 40.0% | |
| ATCTAGCAGAGCTAATGCTA+TGG | - | chr4.4:19072893-19072912 | None:intergenic | 40.0% | |
| ATTATGACCAATTGCCATCC+AGG | + | chr4.4:19073136-19073155 | MS.gene35178:intron | 40.0% | |
| ATTGACAGCCAGGCTAAATA+CGG | + | chr4.4:19073403-19073422 | MS.gene35178:CDS | 40.0% | |
| CACTTCATGAACAGAAACTC+GGG | + | chr4.4:19073359-19073378 | MS.gene35178:intron | 40.0% | |
| CGCTTCTTCTGGATTATCAA+CGG | - | chr4.4:19073174-19073193 | None:intergenic | 40.0% | |
| CTTGAACACTAGCTGAAAGA+TGG | - | chr4.4:19073581-19073600 | None:intergenic | 40.0% | |
| GACGATAACGAACCAGATTT+AGG | + | chr4.4:19073648-19073667 | MS.gene35178:intron | 40.0% | |
| GAGCTAATGCTATGGCATAT+TGG | - | chr4.4:19072885-19072904 | None:intergenic | 40.0% | |
| GTGCAGAAATTTATGTGGCT+AGG | + | chr4.4:19074982-19075001 | MS.gene35178:intron | 40.0% | |
| TATTTGCGTTTCCCCAACAA+AGG | + | chr4.4:19073454-19073473 | MS.gene35178:CDS | 40.0% | |
| TCCTCGGCTACTAATGAAAA+TGG | - | chr4.4:19072462-19072481 | None:intergenic | 40.0% | |
| TGAACACTAGCTGAAAGATG+GGG | - | chr4.4:19073579-19073598 | None:intergenic | 40.0% | |
| TGCCGTTATAGGTTTGTAAG+AGG | + | chr4.4:19072856-19072875 | MS.gene35178:intron | 40.0% | |
| TTCTTTGCCAAAGTTGGCAA+TGG | + | chr4.4:19073015-19073034 | MS.gene35178:CDS | 40.0% | |
| TTTCACGGTATCCTTTGTTG+GGG | - | chr4.4:19073468-19073487 | None:intergenic | 40.0% | |
| ! | AACCAGATTTAGGACTTGTC+TGG | + | chr4.4:19073658-19073677 | MS.gene35178:intron | 40.0% |
| ! | ACCATTTTCATTAGTAGCCG+AGG | + | chr4.4:19072458-19072477 | MS.gene35178:CDS | 40.0% |
| ! | ATGCTGCTGATTATGGCTAA+TGG | - | chr4.4:19072968-19072987 | None:intergenic | 40.0% |
| ! | ATTTTCATTAGTAGCCGAGG+AGG | + | chr4.4:19072461-19072480 | MS.gene35178:CDS | 40.0% |
| ! | GAATCTAGAGTATGATGCCA+AGG | + | chr4.4:19074442-19074461 | MS.gene35178:intron | 40.0% |
| ! | GATAATGGTAAGTCTGAAGG+TGG | + | chr4.4:19072702-19072721 | MS.gene35178:CDS | 40.0% |
| ! | GATCTGCTGTGAAGTTGATT+TGG | + | chr4.4:19074800-19074819 | MS.gene35178:intron | 40.0% |
| ! | GGATGGTTCTACACAAACTA+AGG | + | chr4.4:19073056-19073075 | MS.gene35178:CDS | 40.0% |
| ! | TTTAGGGTTATTGACATGCC+TGG | - | chr4.4:19072051-19072070 | None:intergenic | 40.0% |
| !! | AAAGTGAAGGCATCAAGTTC+TGG | - | chr4.4:19075256-19075275 | None:intergenic | 40.0% |
| !! | CATTAGCTCTGCTAGATCAA+GGG | + | chr4.4:19072896-19072915 | MS.gene35178:CDS | 40.0% |
| !! | GCGGAAATGATGGATGTTAT+AGG | + | chr4.4:19073944-19073963 | MS.gene35178:intron | 40.0% |
| !!! | CGGACTTGTTTTTACTGTAC+AGG | - | chr4.4:19075078-19075097 | None:intergenic | 40.0% |
| !!! | TGGGTTTTGGATCCAATAGA+TGG | + | chr4.4:19072741-19072760 | MS.gene35178:CDS | 40.0% |
| ACATTCACCTGGATGGCAAT+TGG | - | chr4.4:19073146-19073165 | None:intergenic | 45.0% | |
| ACCACAAAGCCACAACAGTT+TGG | - | chr4.4:19074830-19074849 | None:intergenic | 45.0% | |
| AGGGTGACAGATCGTAATGA+GGG | + | chr4.4:19073993-19074012 | MS.gene35178:intron | 45.0% | |
| ATGGTTGCCAGTGGAAGATT+TGG | - | chr4.4:19072949-19072968 | None:intergenic | 45.0% | |
| CAACGGTACTAACATTCACC+TGG | - | chr4.4:19073157-19073176 | None:intergenic | 45.0% | |
| CATTTGGTTGACAGGTTCAC+AGG | + | chr4.4:19072395-19072414 | MS.gene35178:intron | 45.0% | |
| CCATAATCAGCAACAGTGAC+AGG | - | chr4.4:19072203-19072222 | None:intergenic | 45.0% | |
| GATCGTAATGAGGGAAGTAG+TGG | + | chr4.4:19074002-19074021 | MS.gene35178:intron | 45.0% | |
| GGTACTAACATTCACCTGGA+TGG | - | chr4.4:19073153-19073172 | None:intergenic | 45.0% | |
| TAGCTGAAAGATGGGGTGAA+AGG | - | chr4.4:19073572-19073591 | None:intergenic | 45.0% | |
| TCAGGCAACGAAAGAAACAG+TGG | + | chr4.4:19074067-19074086 | MS.gene35178:intron | 45.0% | |
| TCTTCGTAAGGAAAGTGGTC+AGG | + | chr4.4:19072578-19072597 | MS.gene35178:CDS | 45.0% | |
| TGAGAAGTCCAAAGGGTTTC+CGG | - | chr4.4:19075189-19075208 | None:intergenic | 45.0% | |
| TGCTTGTCTGATGCCGTTAT+AGG | + | chr4.4:19072845-19072864 | MS.gene35178:intron | 45.0% | |
| TGGTCATAATGCAACTGTCG+AGG | - | chr4.4:19073126-19073145 | None:intergenic | 45.0% | |
| TGTACTTCTACAGAAGCTGG+AGG | + | chr4.4:19075146-19075165 | MS.gene35178:intron | 45.0% | |
| TTATGGCTAATGGTTGCCAG+TGG | - | chr4.4:19072958-19072977 | None:intergenic | 45.0% | |
| TTTGAGTGGCTGTGTTATCG+CGG | - | chr4.4:19074136-19074155 | None:intergenic | 45.0% | |
| ! | ACCAAACTGTTGTGGCTTTG+TGG | + | chr4.4:19074826-19074845 | MS.gene35178:intron | 45.0% |
| ! | ATGGTAGTGACTAGTGATGG+AGG | + | chr4.4:19074041-19074060 | MS.gene35178:intron | 45.0% |
| ! | CCTGTCACTGTTGCTGATTA+TGG | + | chr4.4:19072200-19072219 | MS.gene35178:CDS | 45.0% |
| ! | CTGGAGCTAGTTTAGTGTCT+TGG | + | chr4.4:19074867-19074886 | MS.gene35178:intron | 45.0% |
| ! | GTGATGGTAGTGACTAGTGA+TGG | + | chr4.4:19074038-19074057 | MS.gene35178:intron | 45.0% |
| ! | TGGTAGTGACTAGTGATGGA+GGG | + | chr4.4:19074042-19074061 | MS.gene35178:intron | 45.0% |
| ! | TTTGGAGCACCAAACTGTTG+TGG | + | chr4.4:19074818-19074837 | MS.gene35178:intron | 45.0% |
| !! | CAGTGACAGTAGAAGGTGTT+GGG | + | chr4.4:19074107-19074126 | MS.gene35178:intron | 45.0% |
| !! | GCATTAGCTCTGCTAGATCA+AGG | + | chr4.4:19072895-19072914 | MS.gene35178:CDS | 45.0% |
| AAATACGGAGCTCTGTCCAG+AGG | + | chr4.4:19073418-19073437 | MS.gene35178:CDS | 50.0% | |
| AAGTCTGAAGGTGGTTCCGT+TGG | + | chr4.4:19072711-19072730 | MS.gene35178:CDS | 50.0% | |
| ACAGAGCTCCGTATTTAGCC+TGG | - | chr4.4:19073414-19073433 | None:intergenic | 50.0% | |
| ACCAGTCAGAATTGACAGCC+AGG | + | chr4.4:19073393-19073412 | MS.gene35178:CDS | 50.0% | |
| AGACAGCAATGGAGGCTGTT+GGG | + | chr4.4:19073902-19073921 | MS.gene35178:intron | 50.0% | |
| ATATATAGCCCCGTCTCCTC+TGG | - | chr4.4:19073437-19073456 | None:intergenic | 50.0% | |
| ATGGATGGTGACAGCAGCAA+TGG | + | chr4.4:19073856-19073875 | MS.gene35178:intron | 50.0% | |
| GAGGGTGACAGATCGTAATG+AGG | + | chr4.4:19073992-19074011 | MS.gene35178:intron | 50.0% | |
| GCTGGCTGTATTGTTGTGAG+CGG | + | chr4.4:19073505-19073524 | MS.gene35178:CDS | 50.0% | |
| GGATTCAGGGGATCTTCGTA+AGG | + | chr4.4:19072566-19072585 | MS.gene35178:intron | 50.0% | |
| GGCTTGTCCAAATCTTCCAC+TGG | + | chr4.4:19072939-19072958 | MS.gene35178:CDS | 50.0% | |
| GGGGATCTTCGTAAGGAAAG+TGG | + | chr4.4:19072573-19072592 | MS.gene35178:CDS | 50.0% | |
| GGTATTGTCTCAGATGCTGC+CGG | + | chr4.4:19075167-19075186 | MS.gene35178:CDS | 50.0% | |
| GTTGACAGGTTCACAGGTCT+TGG | + | chr4.4:19072401-19072420 | MS.gene35178:intron | 50.0% | |
| TGGCTGTCAATTCTGACTGG+TGG | - | chr4.4:19073394-19073413 | None:intergenic | 50.0% | |
| TGTTGGGCAGCATAGGTTGT+CGG | + | chr4.4:19073918-19073937 | MS.gene35178:intron | 50.0% | |
| ! | AGGGAAGTAGTGGAGAGTGT+TGG | + | chr4.4:19074012-19074031 | MS.gene35178:intron | 50.0% |
| ! | GCAGTGACAGTAGAAGGTGT+TGG | + | chr4.4:19074106-19074125 | MS.gene35178:intron | 50.0% |
| ! | GTACTGGCAGTGACAGTAGA+AGG | + | chr4.4:19074100-19074119 | MS.gene35178:intron | 50.0% |
| !! | CAAAACCCAGTGTCGACCAA+CGG | - | chr4.4:19072730-19072749 | None:intergenic | 50.0% |
| !! | GGGAAGTAGTGGAGAGTGTT+GGG | + | chr4.4:19074013-19074032 | MS.gene35178:intron | 50.0% |
| !! | TGGAGAGTGTTGGGAAGTGA+TGG | + | chr4.4:19074022-19074041 | MS.gene35178:intron | 50.0% |
| AGATGCTGCCGGAAACCCTT+TGG | + | chr4.4:19075178-19075197 | MS.gene35178:CDS | 55.0% | |
| GAGACAGCAATGGAGGCTGT+TGG | + | chr4.4:19073901-19073920 | MS.gene35178:intron | 55.0% | |
| GCCTGGCTGTCAATTCTGAC+TGG | - | chr4.4:19073397-19073416 | None:intergenic | 55.0% | |
| GGAAGTCGAGACAGCAATGG+AGG | + | chr4.4:19073894-19073913 | MS.gene35178:intron | 55.0% | |
| GTGACAGCAGCAATGGTGAG+TGG | + | chr4.4:19073863-19073882 | MS.gene35178:intron | 55.0% | |
| GTTGGGCAGCATAGGTTGTC+GGG | + | chr4.4:19073919-19073938 | MS.gene35178:intron | 55.0% | |
| TGGTTCCGTTGGTCGACACT+GGG | + | chr4.4:19072722-19072741 | MS.gene35178:CDS | 55.0% | |
| ! | CAGTGGATAGTGTCGGGTAC+TGG | + | chr4.4:19074084-19074103 | MS.gene35178:intron | 55.0% |
| ! | CGTTGGTCGACACTGGGTTT+TGG | + | chr4.4:19072728-19072747 | MS.gene35178:CDS | 55.0% |
| !! | GACTAGTGATGGAGGGTGTC+AGG | + | chr4.4:19074049-19074068 | MS.gene35178:intron | 55.0% |
| !! | TTGTCGGGTGGCGGAAATGA+TGG | + | chr4.4:19073934-19073953 | MS.gene35178:intron | 55.0% |
| AGCTCTGTCCAGAGGAGACG+GGG | + | chr4.4:19073426-19073445 | MS.gene35178:CDS | 60.0% | |
| CAATGGTGAGTGGTGCCTGG+CGG | + | chr4.4:19073873-19073892 | MS.gene35178:intron | 60.0% | |
| CAGCAATGGTGAGTGGTGCC+TGG | + | chr4.4:19073870-19073889 | MS.gene35178:intron | 60.0% | |
| CAGCATAGGTTGTCGGGTGG+CGG | + | chr4.4:19073925-19073944 | MS.gene35178:intron | 60.0% | |
| GAGCTCTGTCCAGAGGAGAC+GGG | + | chr4.4:19073425-19073444 | MS.gene35178:CDS | 60.0% | |
| GCAAAGACGAGCAGCGAGAG+TGG | - | chr4.4:19072029-19072048 | None:intergenic | 60.0% | |
| GGAGCTCTGTCCAGAGGAGA+CGG | + | chr4.4:19073424-19073443 | MS.gene35178:CDS | 60.0% | |
| GGCGGAAGTCGAGACAGCAA+TGG | + | chr4.4:19073891-19073910 | MS.gene35178:intron | 60.0% | |
| GTGGTTCCGTTGGTCGACAC+TGG | + | chr4.4:19072721-19072740 | MS.gene35178:CDS | 60.0% | |
| TCTCGCTGCTCGTCTTTGCC+AGG | + | chr4.4:19072030-19072049 | MS.gene35178:CDS | 60.0% | |
| TGGAGGCTGTTGGGCAGCAT+AGG | + | chr4.4:19073911-19073930 | MS.gene35178:intron | 60.0% | |
| TTGCTGTCTCGACTTCCGCC+AGG | - | chr4.4:19073891-19073910 | None:intergenic | 60.0% | |
| GGGCAGCATAGGTTGTCGGG+TGG | + | chr4.4:19073922-19073941 | MS.gene35178:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19071983 | 19075322 | 19071983 | ID=MS.gene35178 |
| chr4.4 | mRNA | 19071983 | 19075322 | 19071983 | ID=MS.gene35178.t1;Parent=MS.gene35178 |
| chr4.4 | exon | 19071983 | 19072055 | 19071983 | ID=MS.gene35178.t1.exon1;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19071983 | 19072055 | 19071983 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19072150 | 19072221 | 19072150 | ID=MS.gene35178.t1.exon2;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19072150 | 19072221 | 19072150 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19072409 | 19072482 | 19072409 | ID=MS.gene35178.t1.exon3;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19072409 | 19072482 | 19072409 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19072567 | 19072772 | 19072567 | ID=MS.gene35178.t1.exon4;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19072567 | 19072772 | 19072567 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19072867 | 19073077 | 19072867 | ID=MS.gene35178.t1.exon5;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19072867 | 19073077 | 19072867 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19073158 | 19073256 | 19073158 | ID=MS.gene35178.t1.exon6;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19073158 | 19073256 | 19073158 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19073373 | 19073526 | 19073373 | ID=MS.gene35178.t1.exon7;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19073373 | 19073526 | 19073373 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| chr4.4 | exon | 19075159 | 19075322 | 19075159 | ID=MS.gene35178.t1.exon8;Parent=MS.gene35178.t1 |
| chr4.4 | CDS | 19075159 | 19075322 | 19075159 | ID=cds.MS.gene35178.t1;Parent=MS.gene35178.t1 |
| Gene Sequence |
| Protein sequence |
