Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013374.t1 | XP_003602501.1 | 96.1 | 333 | 13 | 0 | 1 | 333 | 1 | 333 | 4.70E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013374.t1 | Q9LS48 | 46.1 | 89 | 48 | 0 | 218 | 306 | 212 | 300 | 5.5e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013374.t1 | G7JAC0 | 96.1 | 333 | 13 | 0 | 1 | 333 | 1 | 333 | 3.4e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64503 | MS.gene013374 | PPI |
| MS.gene013374 | MS.gene09833 | PPI |
| MS.gene061914 | MS.gene013374 | PPI |
| MS.gene018541 | MS.gene013374 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013374.t1 | MTR_3g095070 | 96.096 | 333 | 13 | 0 | 1 | 333 | 1 | 333 | 0.0 | 661 |
| MS.gene013374.t1 | MTR_7g100328 | 37.367 | 281 | 151 | 6 | 60 | 324 | 74 | 345 | 9.42e-52 | 175 |
| MS.gene013374.t1 | MTR_1g067600 | 33.333 | 210 | 134 | 4 | 104 | 310 | 132 | 338 | 3.83e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013374.t1 | AT4G39470 | 54.513 | 277 | 120 | 2 | 62 | 333 | 66 | 341 | 6.08e-103 | 306 |
| MS.gene013374.t1 | AT3G18420 | 36.992 | 246 | 142 | 4 | 74 | 306 | 55 | 300 | 2.43e-42 | 149 |
| MS.gene013374.t1 | AT2G37400 | 39.896 | 193 | 115 | 1 | 123 | 314 | 129 | 321 | 9.74e-38 | 137 |
| MS.gene013374.t1 | AT3G53560 | 40.000 | 195 | 112 | 2 | 123 | 314 | 129 | 321 | 2.32e-37 | 137 |
| MS.gene013374.t1 | AT3G53560 | 39.320 | 206 | 119 | 3 | 112 | 314 | 167 | 369 | 4.78e-37 | 137 |
| MS.gene013374.t1 | AT5G02590 | 39.691 | 194 | 115 | 2 | 115 | 307 | 120 | 312 | 5.50e-37 | 135 |
| MS.gene013374.t1 | AT3G09490 | 35.814 | 215 | 130 | 3 | 92 | 303 | 84 | 293 | 1.65e-30 | 118 |
Find 68 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATTGTATTTGGAAATTT+TGG | 0.111951 | 3.4:-86445386 | MS.gene013374:CDS |
| TGTTGATTCAGCTGAAATTT+TGG | 0.183578 | 3.4:-86445605 | MS.gene013374:CDS |
| TAAGGCTAAAGGATTGTATT+TGG | 0.219222 | 3.4:-86445395 | MS.gene013374:CDS |
| AACAAGTGCATAGTGATAAA+TGG | 0.231649 | 3.4:+86445779 | None:intergenic |
| AATTCCTTCTGAAACTTTAC+TGG | 0.241171 | 3.4:+86443543 | None:intergenic |
| ATACAGTCTTCTAGATAAAA+AGG | 0.263949 | 3.4:-86443670 | MS.gene013374:CDS |
| AAAATTGTGGAGGGTGTTAA+TGG | 0.334111 | 3.4:+86445748 | None:intergenic |
| AGAAGGGAATTGGGGAGATA+TGG | 0.336995 | 3.4:+86445871 | None:intergenic |
| TGGTTGTGTATGGGAAAATT+AGG | 0.344777 | 3.4:-86445534 | MS.gene013374:CDS |
| GTGTGCTTTGCAGGGTGATT+TGG | 0.355123 | 3.4:-86443962 | MS.gene013374:intron |
| CCCTTCTGTGGAAACTCTTC+AGG | 0.358106 | 3.4:+86443606 | None:intergenic |
| AGCCTCCACTCAACCTCATT+TGG | 0.359412 | 3.4:+86445457 | None:intergenic |
| TCGTGGCAAAAGAAGGGAAT+TGG | 0.399875 | 3.4:+86445861 | None:intergenic |
| CGTGGCAAAAGAAGGGAATT+GGG | 0.418032 | 3.4:+86445862 | None:intergenic |
| ACAAGTGCATAGTGATAAAT+GGG | 0.468344 | 3.4:+86445780 | None:intergenic |
| GCTCTTAAAGTGGTTGTGTA+TGG | 0.470707 | 3.4:-86445544 | MS.gene013374:CDS |
| TTGCAGGGTGATTTGGAGGA+GGG | 0.472903 | 3.4:-86443955 | MS.gene013374:intron |
| TTACGGAGGAGAGAAATATA+AGG | 0.473332 | 3.4:-86444124 | MS.gene013374:CDS |
| TACGAATTCGTGGCAAAAGA+AGG | 0.481369 | 3.4:+86445854 | None:intergenic |
| TTTGCAGGGTGATTTGGAGG+AGG | 0.482427 | 3.4:-86443956 | MS.gene013374:intron |
| GGTTGAAGTGAAATTGATAA+GGG | 0.483895 | 3.4:+86445820 | None:intergenic |
| TGCACAAATGCGTGTTGTAC+AGG | 0.487235 | 3.4:-86444093 | MS.gene013374:intron |
| TGCTTTGCAGGGTGATTTGG+AGG | 0.487354 | 3.4:-86443959 | MS.gene013374:intron |
| GATATCACCTTAGCAGCAAA+AGG | 0.497307 | 3.4:-86443573 | MS.gene013374:CDS |
| TTCAGCATTTCAAATACAGC+AGG | 0.497693 | 3.4:+86444182 | None:intergenic |
| GACAATGGGGTATTTGAGTA+AGG | 0.500527 | 3.4:-86445413 | MS.gene013374:CDS |
| CTCTTAAAGTGGTTGTGTAT+GGG | 0.502104 | 3.4:-86445543 | MS.gene013374:CDS |
| AAGCTGAGAAGTTTGTGAAG+AGG | 0.509773 | 3.4:-86445495 | MS.gene013374:CDS |
| TGGTTGAAGTGAAATTGATA+AGG | 0.510289 | 3.4:+86445819 | None:intergenic |
| ATTCCTTCTGAAACTTTACT+GGG | 0.524396 | 3.4:+86443544 | None:intergenic |
| AAACTCACCTGGCAAAGATA+AGG | 0.536373 | 3.4:+86443883 | None:intergenic |
| GGGTATTTGAGTAAGGCTAA+AGG | 0.536389 | 3.4:-86445406 | MS.gene013374:CDS |
| GCATTGTGTTATGAGACAAT+GGG | 0.536548 | 3.4:-86445427 | MS.gene013374:CDS |
| GCCTGAAGAGTTTCCACAGA+AGG | 0.536929 | 3.4:-86443607 | MS.gene013374:CDS |
| AAATGTTGAGGCTCTTAAAG+TGG | 0.543541 | 3.4:-86445554 | MS.gene013374:CDS |
| TATTAATGAAAACAAAGTTA+CGG | 0.545367 | 3.4:-86444141 | MS.gene013374:CDS |
| GGTACTGAAACTGCAAAAGC+GGG | 0.549723 | 3.4:+86445631 | None:intergenic |
| CCTGAAGAGTTTCCACAGAA+GGG | 0.557973 | 3.4:-86443606 | MS.gene013374:CDS |
| AAGTTGGTTAAAGTTGTTTG+AGG | 0.558821 | 3.4:+86445721 | None:intergenic |
| GGAGGGTGTTAATGGAGTGC+GGG | 0.560063 | 3.4:+86445756 | None:intergenic |
| TGCATTGTGTTATGAGACAA+TGG | 0.562265 | 3.4:-86445428 | MS.gene013374:CDS |
| GATTGATGAGGAACCAAATG+AGG | 0.565692 | 3.4:-86445470 | MS.gene013374:CDS |
| TGGAGGGTGTTAATGGAGTG+CGG | 0.568184 | 3.4:+86445755 | None:intergenic |
| TCATCAAGAAATCCCTTCTG+TGG | 0.572197 | 3.4:+86443594 | None:intergenic |
| TTGTTGCAGATACGAATTCG+TGG | 0.574634 | 3.4:+86445844 | None:intergenic |
| TGAAGAGCTCTAACAAGAAG+AGG | 0.582607 | 3.4:+86445355 | None:intergenic |
| AGGAACCAAATGAGGTTGAG+TGG | 0.584513 | 3.4:-86445462 | MS.gene013374:CDS |
| ACGAATTCGTGGCAAAAGAA+GGG | 0.586466 | 3.4:+86445855 | None:intergenic |
| ATCCCCAGTAAAGTTTCAGA+AGG | 0.590040 | 3.4:-86443547 | MS.gene013374:CDS |
| AGGTACTGAAACTGCAAAAG+CGG | 0.602398 | 3.4:+86445630 | None:intergenic |
| TGTGAAGAGGTTGATTGATG+AGG | 0.608344 | 3.4:-86445482 | MS.gene013374:CDS |
| TGTTTGAGGTGAGAAAATTG+TGG | 0.610889 | 3.4:+86445735 | None:intergenic |
| GAAGGATTCAAGAAATGTTG+AGG | 0.622010 | 3.4:-86445566 | MS.gene013374:CDS |
| TGTATGGGAAAATTAGGAGA+GGG | 0.623027 | 3.4:-86445528 | MS.gene013374:CDS |
| ATTTCAGCTGAATCAACAGA+AGG | 0.625556 | 3.4:+86445610 | None:intergenic |
| TGAGGTGAGAAAATTGTGGA+GGG | 0.628555 | 3.4:+86445739 | None:intergenic |
| GTGTATGGGAAAATTAGGAG+AGG | 0.651978 | 3.4:-86445529 | MS.gene013374:CDS |
| AGATAAGGCCTAAAATCTCG+AGG | 0.652081 | 3.4:+86443898 | None:intergenic |
| TTCCTTCTGAAACTTTACTG+GGG | 0.652971 | 3.4:+86443545 | None:intergenic |
| GTGGCAAAAGAAGGGAATTG+GGG | 0.656867 | 3.4:+86445863 | None:intergenic |
| TGTATTTGAAATGCTGAACA+AGG | 0.665874 | 3.4:-86444177 | MS.gene013374:CDS |
| TTGAGGTGAGAAAATTGTGG+AGG | 0.671928 | 3.4:+86445738 | None:intergenic |
| ATAGTGATAAATGGGTAGCA+CGG | 0.676425 | 3.4:+86445788 | None:intergenic |
| AACCAAATGAGGTTGAGTGG+AGG | 0.677766 | 3.4:-86445459 | MS.gene013374:CDS |
| TAATGAAAACAAAGTTACGG+AGG | 0.686188 | 3.4:-86444138 | MS.gene013374:CDS |
| GAGATATGGTTTGAACTCTG+AGG | 0.695791 | 3.4:+86445885 | None:intergenic |
| CTCTGAGGAGATGAAGAGAG+TGG | 0.713127 | 3.4:+86445900 | None:intergenic |
| CATTGTGTTATGAGACAATG+GGG | 0.737873 | 3.4:-86445426 | MS.gene013374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATGAAAACAAAGTTA+CGG | - | chr3.4:86445293-86445312 | MS.gene013374:intron | 15.0% |
| !!! | TAATACAATTACTATTTTGA+CGG | + | chr3.4:86445099-86445118 | None:intergenic | 15.0% |
| !!! | TCAAATTTTGATTAGAAATT+TGG | - | chr3.4:86444225-86444244 | MS.gene013374:intron | 15.0% |
| !! | AAATAAAGAGTTAAGAACTT+AGG | + | chr3.4:86444682-86444701 | None:intergenic | 20.0% |
| !! | AATAAAGAGTTAAGAACTTA+GGG | + | chr3.4:86444681-86444700 | None:intergenic | 20.0% |
| !! | CAAAACAATATAAGCATAAT+AGG | + | chr3.4:86444786-86444805 | None:intergenic | 20.0% |
| !! | CAATACAATAATTTCATGAA+TGG | + | chr3.4:86445712-86445731 | None:intergenic | 20.0% |
| !! | TTTATGTGATGAATATTAGA+CGG | - | chr3.4:86444855-86444874 | MS.gene013374:intron | 20.0% |
| !! | TTTGATTATGATTGAAAAGT+TGG | - | chr3.4:86444175-86444194 | MS.gene013374:CDS | 20.0% |
| !!! | AAAGTTTCATTTTTTCTCAT+TGG | - | chr3.4:86443746-86443765 | MS.gene013374:intron | 20.0% |
| !!! | AAGTTTCATTTTTTCTCATT+GGG | - | chr3.4:86443747-86443766 | MS.gene013374:intron | 20.0% |
| !!! | ACTAAGTTGAAAAGAATTTA+TGG | + | chr3.4:86444369-86444388 | None:intergenic | 20.0% |
| !!! | ATATGAATGCTTTTTTGTTT+AGG | - | chr3.4:86444198-86444217 | MS.gene013374:CDS | 20.0% |
| !!! | TAATATAGTTCTGTAAGATA+TGG | - | chr3.4:86445666-86445685 | MS.gene013374:CDS | 20.0% |
| !!! | TATATCTGTTTTTGTTTTGA+TGG | - | chr3.4:86444121-86444140 | MS.gene013374:CDS | 20.0% |
| ! | AACATCCAAAATTCATACAT+GGG | + | chr3.4:86444736-86444755 | None:intergenic | 25.0% |
| ! | AATCTGAATCCAAAGTAAAA+TGG | + | chr3.4:86444995-86445014 | None:intergenic | 25.0% |
| ! | AATTGTCAAAATAACAGCTA+TGG | - | chr3.4:86444897-86444916 | MS.gene013374:intron | 25.0% |
| ! | AGAACAAAAATTAAAGTCAG+AGG | + | chr3.4:86445606-86445625 | None:intergenic | 25.0% |
| ! | ATACAGTCTTCTAGATAAAA+AGG | - | chr3.4:86445764-86445783 | MS.gene013374:CDS | 25.0% |
| ! | ATGCAATCATATTTGCATAA+AGG | + | chr3.4:86444630-86444649 | None:intergenic | 25.0% |
| ! | ATGTTAAAAGAATATGTTGC+AGG | - | chr3.4:86445734-86445753 | MS.gene013374:CDS | 25.0% |
| ! | TCACATAAATTTACAATCAC+AGG | + | chr3.4:86444844-86444863 | None:intergenic | 25.0% |
| ! | TGTTAAAAGAATATGTTGCA+GGG | - | chr3.4:86445735-86445754 | MS.gene013374:CDS | 25.0% |
| ! | TTTGATGGAATTATGAATGT+TGG | - | chr3.4:86444136-86444155 | MS.gene013374:CDS | 25.0% |
| !! | AACTTTTTGTGAAATGAAGT+TGG | + | chr3.4:86443732-86443751 | None:intergenic | 25.0% |
| !! | AGGATTGTATTTGGAAATTT+TGG | - | chr3.4:86444048-86444067 | MS.gene013374:intron | 25.0% |
| !! | TAAAACCCATGTATGAATTT+TGG | - | chr3.4:86444728-86444747 | MS.gene013374:intron | 25.0% |
| !!! | ACATTGATAATTGTTGACTT+AGG | - | chr3.4:86444261-86444280 | MS.gene013374:intron | 25.0% |
| !!! | AGTTGTGAGAATGTTTTAAA+GGG | - | chr3.4:86444318-86444337 | MS.gene013374:intron | 25.0% |
| !!! | ATTTGGAAATTTTGGAGAAT+TGG | - | chr3.4:86444056-86444075 | MS.gene013374:intron | 25.0% |
| !!! | CATTGATAATTGTTGACTTA+GGG | - | chr3.4:86444262-86444281 | MS.gene013374:intron | 25.0% |
| !!! | GTCTTTTTGGAGTAATTATT+TGG | - | chr3.4:86445435-86445454 | MS.gene013374:CDS | 25.0% |
| !!! | TAGTTGTGAGAATGTTTTAA+AGG | - | chr3.4:86444317-86444336 | MS.gene013374:intron | 25.0% |
| AACAAGTGCATAGTGATAAA+TGG | + | chr3.4:86443658-86443677 | None:intergenic | 30.0% | |
| AATATGATTGCATGTTGACA+TGG | - | chr3.4:86444637-86444656 | MS.gene013374:intron | 30.0% | |
| ACAAGTGCATAGTGATAAAT+GGG | + | chr3.4:86443657-86443676 | None:intergenic | 30.0% | |
| CAACATCCAAAATTCATACA+TGG | + | chr3.4:86444737-86444756 | None:intergenic | 30.0% | |
| GGTTGAAGTGAAATTGATAA+GGG | + | chr3.4:86443617-86443636 | None:intergenic | 30.0% | |
| TAAGGCTAAAGGATTGTATT+TGG | - | chr3.4:86444039-86444058 | MS.gene013374:intron | 30.0% | |
| TAATGAAAACAAAGTTACGG+AGG | - | chr3.4:86445296-86445315 | MS.gene013374:intron | 30.0% | |
| TACTTTGGATTCAGATTTGA+AGG | - | chr3.4:86444998-86445017 | MS.gene013374:intron | 30.0% | |
| TGGTTGAAGTGAAATTGATA+AGG | + | chr3.4:86443618-86443637 | None:intergenic | 30.0% | |
| TGTCATGAAATCAATTTACC+AGG | - | chr3.4:86445127-86445146 | MS.gene013374:intron | 30.0% | |
| TTGAGCCTTAGTATGTATTT+CGG | - | chr3.4:86444811-86444830 | MS.gene013374:intron | 30.0% | |
| ! | AACCATGAACAATGTCTTTT+TGG | - | chr3.4:86445422-86445441 | MS.gene013374:CDS | 30.0% |
| ! | AAGTTGGTTAAAGTTGTTTG+AGG | + | chr3.4:86443716-86443735 | None:intergenic | 30.0% |
| ! | ATCAAAATCCTCGAGATTTT+AGG | - | chr3.4:86445528-86445547 | MS.gene013374:CDS | 30.0% |
| ! | GGTAAATTGATTTCATGACA+TGG | + | chr3.4:86445127-86445146 | None:intergenic | 30.0% |
| ! | TGTATTTGAAATGCTGAACA+AGG | - | chr3.4:86445257-86445276 | MS.gene013374:intron | 30.0% |
| !! | AATTCCTTCTGAAACTTTAC+TGG | + | chr3.4:86445894-86445913 | None:intergenic | 30.0% |
| !! | AATTTTGGAGGAGAAGATTT+TGG | - | chr3.4:86443844-86443863 | MS.gene013374:intron | 30.0% |
| !! | ATTCCTTCTGAAACTTTACT+GGG | + | chr3.4:86445893-86445912 | None:intergenic | 30.0% |
| !!! | TGTTGATTCAGCTGAAATTT+TGG | - | chr3.4:86443829-86443848 | MS.gene013374:intron | 30.0% |
| AAATGTTGAGGCTCTTAAAG+TGG | - | chr3.4:86443880-86443899 | MS.gene013374:intron | 35.0% | |
| AACAAACAAATTGAGTGTCC+TGG | + | chr3.4:86445148-86445167 | None:intergenic | 35.0% | |
| AACTCGTAGTAGATAAGCAA+AGG | + | chr3.4:86445395-86445414 | None:intergenic | 35.0% | |
| ATAACATATGTGTGCTTTGC+AGG | - | chr3.4:86445463-86445482 | MS.gene013374:CDS | 35.0% | |
| ATAGTGATAAATGGGTAGCA+CGG | + | chr3.4:86443649-86443668 | None:intergenic | 35.0% | |
| ATTTCAGCTGAATCAACAGA+AGG | + | chr3.4:86443827-86443846 | None:intergenic | 35.0% | |
| CAGTCTTCTAGATAAAAAGG+AGG | - | chr3.4:86445767-86445786 | MS.gene013374:CDS | 35.0% | |
| CATTGTGTTATGAGACAATG+GGG | - | chr3.4:86444008-86444027 | MS.gene013374:intron | 35.0% | |
| CTCCAAAAAGACATTGTTCA+TGG | + | chr3.4:86445427-86445446 | None:intergenic | 35.0% | |
| CTCTTAAAGTGGTTGTGTAT+GGG | - | chr3.4:86443891-86443910 | MS.gene013374:CDS | 35.0% | |
| CTGAATCCAAAGTAAAATGG+TGG | + | chr3.4:86444992-86445011 | None:intergenic | 35.0% | |
| GAAGGATTCAAGAAATGTTG+AGG | - | chr3.4:86443868-86443887 | MS.gene013374:intron | 35.0% | |
| GCATTGTGTTATGAGACAAT+GGG | - | chr3.4:86444007-86444026 | MS.gene013374:intron | 35.0% | |
| GTGATGCACAAAAACAATGA+GGG | - | chr3.4:86445228-86445247 | MS.gene013374:intron | 35.0% | |
| TAACATATGTGTGCTTTGCA+GGG | - | chr3.4:86445464-86445483 | MS.gene013374:CDS | 35.0% | |
| TCTTCCCGAAATACATACTA+AGG | + | chr3.4:86444819-86444838 | None:intergenic | 35.0% | |
| TGAGCCTTAGTATGTATTTC+GGG | - | chr3.4:86444812-86444831 | MS.gene013374:intron | 35.0% | |
| TGCATTGTGTTATGAGACAA+TGG | - | chr3.4:86444006-86444025 | MS.gene013374:intron | 35.0% | |
| TGGTTGTGTATGGGAAAATT+AGG | - | chr3.4:86443900-86443919 | MS.gene013374:CDS | 35.0% | |
| TGTATGGGAAAATTAGGAGA+GGG | - | chr3.4:86443906-86443925 | MS.gene013374:CDS | 35.0% | |
| TTACGGAGGAGAGAAATATA+AGG | - | chr3.4:86445310-86445329 | MS.gene013374:intron | 35.0% | |
| TTAGTATGTATTTCGGGAAG+AGG | - | chr3.4:86444818-86444837 | MS.gene013374:intron | 35.0% | |
| TTCAGCATTTCAAATACAGC+AGG | + | chr3.4:86445255-86445274 | None:intergenic | 35.0% | |
| TTTGCTAGATGCTTCTTTGA+CGG | - | chr3.4:86445024-86445043 | MS.gene013374:intron | 35.0% | |
| TTTGGATTCAGATTTGAAGG+TGG | - | chr3.4:86445001-86445020 | MS.gene013374:intron | 35.0% | |
| ! | AAACAAGTTGTGTTGCTGAT+TGG | - | chr3.4:86444528-86444547 | MS.gene013374:intron | 35.0% |
| ! | AACTGTGCAGTGTTGTTAAA+TGG | - | chr3.4:86444925-86444944 | MS.gene013374:intron | 35.0% |
| ! | AGTGATACTCTCTTTTCTAC+AGG | - | chr3.4:86445194-86445213 | MS.gene013374:intron | 35.0% |
| ! | GATTGGTAATCATGGCTATT+AGG | - | chr3.4:86444545-86444564 | MS.gene013374:intron | 35.0% |
| ! | GTGATACTCTCTTTTCTACA+GGG | - | chr3.4:86445195-86445214 | MS.gene013374:intron | 35.0% |
| ! | TGAACACCACCATTTTACTT+TGG | - | chr3.4:86444983-86445002 | MS.gene013374:intron | 35.0% |
| ! | TGATTCAGCTGAAATTTTGG+AGG | - | chr3.4:86443832-86443851 | MS.gene013374:intron | 35.0% |
| ! | TGTTTGAGGTGAGAAAATTG+TGG | + | chr3.4:86443702-86443721 | None:intergenic | 35.0% |
| !! | AAAATTGTGGAGGGTGTTAA+TGG | + | chr3.4:86443689-86443708 | None:intergenic | 35.0% |
| !! | TTCCTTCTGAAACTTTACTG+GGG | + | chr3.4:86445892-86445911 | None:intergenic | 35.0% |
| !!! | ACTATTTTGACGGCATTTTG+TGG | + | chr3.4:86445089-86445108 | None:intergenic | 35.0% |
| AAACTCACCTGGCAAAGATA+AGG | + | chr3.4:86445554-86445573 | None:intergenic | 40.0% | |
| AAGCTGAGAAGTTTGTGAAG+AGG | - | chr3.4:86443939-86443958 | MS.gene013374:CDS | 40.0% | |
| AAGTTATCGCGAAGAGCTTA+TGG | + | chr3.4:86444393-86444412 | None:intergenic | 40.0% | |
| ACGAATTCGTGGCAAAAGAA+GGG | + | chr3.4:86443582-86443601 | None:intergenic | 40.0% | |
| AGATAAGGCCTAAAATCTCG+AGG | + | chr3.4:86445539-86445558 | None:intergenic | 40.0% | |
| ATCCCCAGTAAAGTTTCAGA+AGG | - | chr3.4:86445887-86445906 | MS.gene013374:CDS | 40.0% | |
| GAGATATGGTTTGAACTCTG+AGG | + | chr3.4:86443552-86443571 | None:intergenic | 40.0% | |
| GATATCACCTTAGCAGCAAA+AGG | - | chr3.4:86445861-86445880 | MS.gene013374:CDS | 40.0% | |
| GATTGATGAGGAACCAAATG+AGG | - | chr3.4:86443964-86443983 | MS.gene013374:intron | 40.0% | |
| GATTTGCATACAAACTCACC+TGG | + | chr3.4:86445565-86445584 | None:intergenic | 40.0% | |
| GCTCTTAAAGTGGTTGTGTA+TGG | - | chr3.4:86443890-86443909 | MS.gene013374:intron | 40.0% | |
| GGGTATTTGAGTAAGGCTAA+AGG | - | chr3.4:86444028-86444047 | MS.gene013374:intron | 40.0% | |
| GGTGATGCACAAAAACAATG+AGG | - | chr3.4:86445227-86445246 | MS.gene013374:intron | 40.0% | |
| GTGTATGGGAAAATTAGGAG+AGG | - | chr3.4:86443905-86443924 | MS.gene013374:CDS | 40.0% | |
| TACGAATTCGTGGCAAAAGA+AGG | + | chr3.4:86443583-86443602 | None:intergenic | 40.0% | |
| TATGACGCTTGTCAAAACAC+CGG | + | chr3.4:86444962-86444981 | None:intergenic | 40.0% | |
| TCATCAAGAAATCCCTTCTG+TGG | + | chr3.4:86445843-86445862 | None:intergenic | 40.0% | |
| TGAGGTGAGAAAATTGTGGA+GGG | + | chr3.4:86443698-86443717 | None:intergenic | 40.0% | |
| TTGAGGTGAGAAAATTGTGG+AGG | + | chr3.4:86443699-86443718 | None:intergenic | 40.0% | |
| TTGTTGCAGATACGAATTCG+TGG | + | chr3.4:86443593-86443612 | None:intergenic | 40.0% | |
| ! | ACTCTCTTTTCTACAGGGTT+TGG | - | chr3.4:86445200-86445219 | MS.gene013374:intron | 40.0% |
| ! | GACAATGGGGTATTTGAGTA+AGG | - | chr3.4:86444021-86444040 | MS.gene013374:intron | 40.0% |
| ! | GTGTTGCTGATTGGTAATCA+TGG | - | chr3.4:86444537-86444556 | MS.gene013374:intron | 40.0% |
| ! | TGAAGAGCTCTAACAAGAAG+AGG | + | chr3.4:86444082-86444101 | None:intergenic | 40.0% |
| ! | TGTGAAGAGGTTGATTGATG+AGG | - | chr3.4:86443952-86443971 | MS.gene013374:CDS | 40.0% |
| ! | TTTTCTACAGGGTTTGGCTA+TGG | - | chr3.4:86445206-86445225 | MS.gene013374:intron | 40.0% |
| !! | AGGTACTGAAACTGCAAAAG+CGG | + | chr3.4:86443807-86443826 | None:intergenic | 40.0% |
| !! | TTGTTGACTTAGGGTCTGTT+TGG | - | chr3.4:86444271-86444290 | MS.gene013374:intron | 40.0% |
| !! | TTTTAGGCCTTATCTTTGCC+AGG | - | chr3.4:86445544-86445563 | MS.gene013374:CDS | 40.0% |
| AACCAAATGAGGTTGAGTGG+AGG | - | chr3.4:86443975-86443994 | MS.gene013374:intron | 45.0% | |
| AGAAGGGAATTGGGGAGATA+TGG | + | chr3.4:86443566-86443585 | None:intergenic | 45.0% | |
| AGGAACCAAATGAGGTTGAG+TGG | - | chr3.4:86443972-86443991 | MS.gene013374:intron | 45.0% | |
| CCTGAAGAGTTTCCACAGAA+GGG | - | chr3.4:86445828-86445847 | MS.gene013374:CDS | 45.0% | |
| CGTGGCAAAAGAAGGGAATT+GGG | + | chr3.4:86443575-86443594 | None:intergenic | 45.0% | |
| GATGAATATTAGACGGCGCT+AGG | - | chr3.4:86444862-86444881 | MS.gene013374:intron | 45.0% | |
| GTGGCAAAAGAAGGGAATTG+GGG | + | chr3.4:86443574-86443593 | None:intergenic | 45.0% | |
| TCGTGGCAAAAGAAGGGAAT+TGG | + | chr3.4:86443576-86443595 | None:intergenic | 45.0% | |
| TGCACAAATGCGTGTTGTAC+AGG | - | chr3.4:86445341-86445360 | MS.gene013374:intron | 45.0% | |
| ! | GCTTCTTTGACGGCATTTTG+TGG | - | chr3.4:86445034-86445053 | MS.gene013374:intron | 45.0% |
| ! | GGATGTTCCTTTTGCTGCTA+AGG | + | chr3.4:86445871-86445890 | None:intergenic | 45.0% |
| ! | GGTACTGAAACTGCAAAAGC+GGG | + | chr3.4:86443806-86443825 | None:intergenic | 45.0% |
| ! | TGGGTAGCACGGAATTTTGA+TGG | + | chr3.4:86443638-86443657 | None:intergenic | 45.0% |
| !! | GGAGGAGAAGATTTTGGAGA+AGG | - | chr3.4:86443850-86443869 | MS.gene013374:intron | 45.0% |
| AGCCTCCACTCAACCTCATT+TGG | + | chr3.4:86443980-86443999 | None:intergenic | 50.0% | |
| CCCTTCTGTGGAAACTCTTC+AGG | + | chr3.4:86445831-86445850 | None:intergenic | 50.0% | |
| GCCTGAAGAGTTTCCACAGA+AGG | - | chr3.4:86445827-86445846 | MS.gene013374:CDS | 50.0% | |
| GCTTGTCAAAACACCGGTCA+CGG | + | chr3.4:86444956-86444975 | None:intergenic | 50.0% | |
| GTGTGCTTTGCAGGGTGATT+TGG | - | chr3.4:86445472-86445491 | MS.gene013374:CDS | 50.0% | |
| ! | CTCTGAGGAGATGAAGAGAG+TGG | + | chr3.4:86443537-86443556 | None:intergenic | 50.0% |
| ! | TGCTTTGCAGGGTGATTTGG+AGG | - | chr3.4:86445475-86445494 | MS.gene013374:CDS | 50.0% |
| ! | TTGCAGGGTGATTTGGAGGA+GGG | - | chr3.4:86445479-86445498 | MS.gene013374:CDS | 50.0% |
| ! | TTTGCAGGGTGATTTGGAGG+AGG | - | chr3.4:86445478-86445497 | MS.gene013374:CDS | 50.0% |
| !! | TGGAGGGTGTTAATGGAGTG+CGG | + | chr3.4:86443682-86443701 | None:intergenic | 50.0% |
| TTAAATGGCGACGCCGTGAC+CGG | - | chr3.4:86444940-86444959 | MS.gene013374:intron | 55.0% | |
| !! | GGAGGGTGTTAATGGAGTGC+GGG | + | chr3.4:86443681-86443700 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86443515 | 86445941 | 86443515 | ID=MS.gene013374 |
| chr3.4 | mRNA | 86443515 | 86445941 | 86443515 | ID=MS.gene013374.t1;Parent=MS.gene013374 |
| chr3.4 | exon | 86445354 | 86445941 | 86445354 | ID=MS.gene013374.t1.exon1;Parent=MS.gene013374.t1 |
| chr3.4 | CDS | 86445354 | 86445941 | 86445354 | ID=cds.MS.gene013374.t1;Parent=MS.gene013374.t1 |
| chr3.4 | exon | 86444094 | 86444240 | 86444094 | ID=MS.gene013374.t1.exon2;Parent=MS.gene013374.t1 |
| chr3.4 | CDS | 86444094 | 86444240 | 86444094 | ID=cds.MS.gene013374.t1;Parent=MS.gene013374.t1 |
| chr3.4 | exon | 86443891 | 86443971 | 86443891 | ID=MS.gene013374.t1.exon3;Parent=MS.gene013374.t1 |
| chr3.4 | CDS | 86443891 | 86443971 | 86443891 | ID=cds.MS.gene013374.t1;Parent=MS.gene013374.t1 |
| chr3.4 | exon | 86443515 | 86443700 | 86443515 | ID=MS.gene013374.t1.exon4;Parent=MS.gene013374.t1 |
| chr3.4 | CDS | 86443515 | 86443700 | 86443515 | ID=cds.MS.gene013374.t1;Parent=MS.gene013374.t1 |
| Gene Sequence |
| Protein sequence |
