AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061914

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061914.t1 MTR_7g100328 98.295 352 5 1 1 352 1 351 0.0 707
MS.gene061914.t1 MTR_1g067600 46.286 350 157 9 1 332 1 337 1.34e-81 253
MS.gene061914.t1 MTR_3g095070 36.458 288 154 7 68 346 57 324 3.87e-49 168
MS.gene061914.t1 MTR_8g101290 29.536 237 135 10 58 284 80 294 6.02e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061914.t1 AT3G53560 63.043 230 80 2 119 348 108 332 3.80e-96 289
MS.gene061914.t1 AT2G37400 54.745 274 112 3 83 348 63 332 4.85e-96 289
MS.gene061914.t1 AT3G53560 63.043 230 80 2 119 348 156 380 7.85e-96 290
MS.gene061914.t1 AT5G02590 43.988 341 141 7 11 337 15 319 2.40e-85 261
MS.gene061914.t1 AT3G09490 44.279 201 108 1 127 327 98 294 2.45e-52 176
MS.gene061914.t1 AT4G39470 32.927 328 178 8 6 331 29 316 6.58e-52 176
MS.gene061914.t1 AT3G18420 33.110 299 166 7 49 339 38 310 5.11e-46 159

Find 94 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGGAGTAGGGTTATTT+TGG 0.204717 7.2:+11888699 None:intergenic
GTTATTGGTTGCTCAGATTA+AGG 0.260166 7.2:-11888114 MS.gene061914:CDS
AGAAGAAGGTTTCGGATGTT+AGG 0.266026 7.2:-11888145 MS.gene061914:CDS
AAGGAGAGGGAGGGTGATAA+GGG 0.280767 7.2:+11888824 None:intergenic
CTTCGAGTTGAAGCATTTCA+TGG 0.282568 7.2:-11888266 MS.gene061914:CDS
TTTGAAACGCAGGGTCGTTT+TGG 0.296089 7.2:+11888726 None:intergenic
TCATCAAAATACTCTTTATA+AGG 0.300941 7.2:+11887918 None:intergenic
AGAGGCGCTTAAAGCTTATC+AGG 0.305548 7.2:-11888072 MS.gene061914:CDS
ACAATTTCTTAGCAGATTCA+TGG 0.328436 7.2:+11888315 None:intergenic
AAAGGAGAGGGAGGGTGATA+AGG 0.331906 7.2:+11888823 None:intergenic
CGTAGAGCTTCAGCATCATT+TGG 0.335421 7.2:+11888473 None:intergenic
TGGAAAGGGTTTGGTGGAGT+AGG 0.342617 7.2:+11888689 None:intergenic
TCTTTATAAGGATGATTCTT+CGG 0.343610 7.2:+11887930 None:intergenic
GCTTAAAGCTTATCAGGATT+TGG 0.343744 7.2:-11888066 MS.gene061914:CDS
TGAAGCTCTACGTGCTTTAA+TGG 0.348747 7.2:-11888462 MS.gene061914:CDS
CTTTATAAGGATGATTCTTC+GGG 0.354190 7.2:+11887931 None:intergenic
GGGAGGAATTGTGGTGGTGG+TGG 0.373494 7.2:+11888791 None:intergenic
GGAGGGAGGAATTGTGGTGG+TGG 0.386933 7.2:+11888788 None:intergenic
GGAATTGTGGTGGTGGTGGA+TGG 0.389269 7.2:+11888795 None:intergenic
AGAAGAGAGAGGATAGGGTT+TGG 0.397563 7.2:+11888669 None:intergenic
TGGACTTGTGATGGCGAGTT+CGG 0.402706 7.2:-11888246 MS.gene061914:CDS
CAGGTTCAATTTCAATCAAA+CGG 0.412642 7.2:+11888390 None:intergenic
GGAAAGGGTTTGGTGGAGTA+GGG 0.413750 7.2:+11888690 None:intergenic
GAGAGGATAGGGTTTGGAAA+GGG 0.419757 7.2:+11888675 None:intergenic
AATTGCCACTCCATTTCTTC+AGG 0.420552 7.2:+11888371 None:intergenic
TGAAATTGAACCTGAAGAAA+TGG 0.424458 7.2:-11888381 MS.gene061914:CDS
TGGGAAGATGAGGATTTGAT+TGG 0.425612 7.2:+11888746 None:intergenic
GATAGGGTTTGGAAAGGGTT+TGG 0.426503 7.2:+11888680 None:intergenic
GAAGAAGGTTTCGGATGTTA+GGG 0.426707 7.2:-11888144 MS.gene061914:CDS
GAGGTTGGGTATGGAATTCA+TGG 0.443970 7.2:+11888889 None:intergenic
GAGGTTGGAGTGACGGAGGT+TGG 0.447670 7.2:+11888874 None:intergenic
GAGGGTGATAAGGGGAATGA+TGG 0.448818 7.2:+11888833 None:intergenic
CAAGAAACAGAAGAAGGTTT+CGG 0.449162 7.2:-11888153 MS.gene061914:CDS
GAGAGAGTGGCGGCGATGAC+AGG 0.450025 7.2:+11888575 None:intergenic
ATCTGCTAAGAAATTGTTTG+AGG 0.450418 7.2:-11888309 MS.gene061914:CDS
AGGTTGGAGTGACGGAGGTT+GGG 0.454356 7.2:+11888875 None:intergenic
AGAGAGGATAGGGTTTGGAA+AGG 0.455764 7.2:+11888674 None:intergenic
CTTCCCTCTCGAATTTCTGC+GGG 0.460361 7.2:+11887871 None:intergenic
ATGCATGTGGTTTCAACGAC+GGG 0.470057 7.2:+11888644 None:intergenic
GAATTGTGGTGGTGGTGGAT+GGG 0.471518 7.2:+11888796 None:intergenic
GGAGTGACGGAGGTTGGGTA+TGG 0.475825 7.2:+11888880 None:intergenic
TTCATCTTTCTTTCTAAGCA+AGG 0.478456 7.2:+11887989 None:intergenic
GAGGATGGAGGGAGGAATTG+TGG 0.483001 7.2:+11888782 None:intergenic
AGGGTTTGGAAAGGGTTTGG+TGG 0.514075 7.2:+11888683 None:intergenic
AATGGAGTGGCAATTGTTGA+AGG 0.525932 7.2:-11888363 MS.gene061914:CDS
CTCTTTAACAATCCTTTCAA+CGG 0.526642 7.2:+11888200 None:intergenic
GTTGTGATTGAGTGAGAGGT+TGG 0.527474 7.2:+11888859 None:intergenic
GAAGATGAGGATTTGATTGG+TGG 0.529899 7.2:+11888749 None:intergenic
AGAGGGAAGAAGCTGGTGCT+AGG 0.536510 7.2:-11887857 MS.gene061914:CDS
GGTTGCTCAGATTAAGGTGA+TGG 0.536546 7.2:-11888108 MS.gene061914:CDS
ATGGGAACGAAAGGAGAGGG+AGG 0.539050 7.2:+11888814 None:intergenic
CATGAAGAAGAAAGCGGTGG+CGG 0.540016 7.2:+11888613 None:intergenic
CTCTCCTCCGACCACCGTAA+CGG 0.540098 7.2:-11888555 MS.gene061914:CDS
TGAGTGAGAGGTTGGAGTGA+CGG 0.540138 7.2:+11888867 None:intergenic
GGTGGAAGCTTGAACGAGGA+TGG 0.546675 7.2:+11888767 None:intergenic
AGGAGAGGGAGGGTGATAAG+GGG 0.549745 7.2:+11888825 None:intergenic
TCTTCCCTCTCGAATTTCTG+CGG 0.553717 7.2:+11887870 None:intergenic
CAATCTGATGAACCGTTGAA+AGG 0.557133 7.2:-11888212 MS.gene061914:CDS
TGGATGGGAACGAAAGGAGA+GGG 0.557548 7.2:+11888811 None:intergenic
TGGTGGTGGATGGGAACGAA+AGG 0.558966 7.2:+11888805 None:intergenic
GACGGTTGTGATTGAGTGAG+AGG 0.560939 7.2:+11888855 None:intergenic
ATAATACCCTGACACAGATA+AGG 0.564227 7.2:+11888017 None:intergenic
GAAGCTTGAACGAGGATGGA+GGG 0.567512 7.2:+11888771 None:intergenic
GTGGATGGGAACGAAAGGAG+AGG 0.569834 7.2:+11888810 None:intergenic
AACGGAAAATGCTACGACGG+AGG 0.575798 7.2:-11888537 MS.gene061914:CDS
GCTCAGATTAAGGTGATGGA+AGG 0.579155 7.2:-11888104 MS.gene061914:CDS
GTGATAAGGGGAATGATGGA+CGG 0.584735 7.2:+11888837 None:intergenic
AGATAAGGCCTAAAATCTCT+CGG 0.585108 7.2:+11888032 None:intergenic
GGAAGCTTGAACGAGGATGG+AGG 0.588597 7.2:+11888770 None:intergenic
TTTAGGCCTTATCTGTGTCA+GGG 0.591449 7.2:-11888023 MS.gene061914:CDS
CGGCGATGACAGGAGTGTGA+TGG 0.592621 7.2:+11888585 None:intergenic
AGCATTTCATGGACTTGTGA+TGG 0.594852 7.2:-11888255 MS.gene061914:CDS
GTTGTGCAAGAAACAGAAGA+AGG 0.595826 7.2:-11888159 MS.gene061914:CDS
AAATTCGAGAGGGAAGAAGC+TGG 0.597290 7.2:-11887864 MS.gene061914:CDS
GTGAGAGGTTGGAGTGACGG+AGG 0.609583 7.2:+11888870 None:intergenic
TGGGAACGAAAGGAGAGGGA+GGG 0.616150 7.2:+11888815 None:intergenic
GCTTAGAAAGAAAGATGAAG+CGG 0.617032 7.2:-11887985 MS.gene061914:CDS
CTCAGATTAAGGTGATGGAA+GGG 0.621477 7.2:-11888103 MS.gene061914:CDS
TGAAATGCTTCAACTCGAAG+CGG 0.637606 7.2:+11888269 None:intergenic
TTGAACCTGAAGAAATGGAG+TGG 0.639379 7.2:-11888376 MS.gene061914:CDS
GCTTGAACGAGGATGGAGGG+AGG 0.643989 7.2:+11888774 None:intergenic
GGTGGTCGGAGGAGAGAGAG+TGG 0.645390 7.2:+11888562 None:intergenic
GATGCATGTGGTTTCAACGA+CGG 0.656165 7.2:+11888643 None:intergenic
AGCTCTACGTGCTTTAATGG+AGG 0.672443 7.2:-11888459 MS.gene061914:CDS
GGCGGCGATAACGATGCATG+TGG 0.673470 7.2:+11888631 None:intergenic
CGTAACGGAAAATGCTACGA+CGG 0.678661 7.2:-11888540 MS.gene061914:CDS
TGCATGTGGTTTCAACGACG+GGG 0.681809 7.2:+11888645 None:intergenic
TTTCCCGCAGAAATTCGAGA+GGG 0.688033 7.2:-11887874 MS.gene061914:CDS
GATGGAGGGAGGAATTGTGG+TGG 0.694212 7.2:+11888785 None:intergenic
GATTGGTGGAAGCTTGAACG+AGG 0.699317 7.2:+11888763 None:intergenic
GAAACGCATGAAGAAGAAAG+CGG 0.702638 7.2:+11888607 None:intergenic
GCATGTGGTTTCAACGACGG+GGG 0.706740 7.2:+11888646 None:intergenic
ACGCATGAAGAAGAAAGCGG+TGG 0.712874 7.2:+11888610 None:intergenic
GGTCGGAGGAGAGAGAGTGG+CGG 0.713800 7.2:+11888565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATACTCTTTATA+AGG + chr7.2:11888823-11888842 None:intergenic 20.0%
!!! TATTTTGATGATAACATGAA+TGG - chr7.2:11888832-11888851 MS.gene061914:CDS 20.0%
! TCTTTATAAGGATGATTCTT+CGG + chr7.2:11888811-11888830 None:intergenic 25.0%
AAAGAGAGTTGAAAAAGCAA+TGG - chr7.2:11888555-11888574 MS.gene061914:CDS 30.0%
ACAATTTCTTAGCAGATTCA+TGG + chr7.2:11888426-11888445 None:intergenic 30.0%
AGAAAAATTGATGAAGCGAT+TGG - chr7.2:11888316-11888335 MS.gene061914:CDS 30.0%
ATCTGCTAAGAAATTGTTTG+AGG - chr7.2:11888429-11888448 MS.gene061914:CDS 30.0%
CAGGTTCAATTTCAATCAAA+CGG + chr7.2:11888351-11888370 None:intergenic 30.0%
CTCTTTAACAATCCTTTCAA+CGG + chr7.2:11888541-11888560 None:intergenic 30.0%
CTTTATAAGGATGATTCTTC+GGG + chr7.2:11888810-11888829 None:intergenic 30.0%
TGAAATTGAACCTGAAGAAA+TGG - chr7.2:11888357-11888376 MS.gene061914:CDS 30.0%
TTCATCTTTCTTTCTAAGCA+AGG + chr7.2:11888752-11888771 None:intergenic 30.0%
! TTCAGCATCATTTGGATTTT+CGG + chr7.2:11888260-11888279 None:intergenic 30.0%
!!! TGTTAGGGATTTTAGGTTAT+TGG - chr7.2:11888609-11888628 MS.gene061914:CDS 30.0%
AGATAAGGCCTAAAATCTCT+CGG + chr7.2:11888709-11888728 None:intergenic 35.0%
ATAATACCCTGACACAGATA+AGG + chr7.2:11888724-11888743 None:intergenic 35.0%
CAAGAAACAGAAGAAGGTTT+CGG - chr7.2:11888585-11888604 MS.gene061914:CDS 35.0%
GCTTAAAGCTTATCAGGATT+TGG - chr7.2:11888672-11888691 MS.gene061914:CDS 35.0%
GCTTAGAAAGAAAGATGAAG+CGG - chr7.2:11888753-11888772 MS.gene061914:CDS 35.0%
! AAGAAGAACCGAGAGATTTT+AGG - chr7.2:11888698-11888717 MS.gene061914:CDS 35.0%
! GTTATTGGTTGCTCAGATTA+AGG - chr7.2:11888624-11888643 MS.gene061914:CDS 35.0%
! TTTCGGATGTTAGGGATTTT+AGG - chr7.2:11888602-11888621 MS.gene061914:CDS 35.0%
AATGGAGTGGCAATTGTTGA+AGG - chr7.2:11888375-11888394 MS.gene061914:CDS 40.0%
AATTGCCACTCCATTTCTTC+AGG + chr7.2:11888370-11888389 None:intergenic 40.0%
AGAAGAAGGTTTCGGATGTT+AGG - chr7.2:11888593-11888612 MS.gene061914:CDS 40.0%
AGCATTTCATGGACTTGTGA+TGG - chr7.2:11888483-11888502 MS.gene061914:CDS 40.0%
CAATCTGATGAACCGTTGAA+AGG - chr7.2:11888526-11888545 MS.gene061914:CDS 40.0%
GAAACGCATGAAGAAGAAAG+CGG + chr7.2:11888134-11888153 None:intergenic 40.0%
GAAGAAGGTTTCGGATGTTA+GGG - chr7.2:11888594-11888613 MS.gene061914:CDS 40.0%
GAAGATGAGGATTTGATTGG+TGG + chr7.2:11887992-11888011 None:intergenic 40.0%
GTTGTGCAAGAAACAGAAGA+AGG - chr7.2:11888579-11888598 MS.gene061914:CDS 40.0%
TGAAATGCTTCAACTCGAAG+CGG + chr7.2:11888472-11888491 None:intergenic 40.0%
TGAAGCTCTACGTGCTTTAA+TGG - chr7.2:11888276-11888295 MS.gene061914:CDS 40.0%
TGGGAAGATGAGGATTTGAT+TGG + chr7.2:11887995-11888014 None:intergenic 40.0%
TTGAACCTGAAGAAATGGAG+TGG - chr7.2:11888362-11888381 MS.gene061914:CDS 40.0%
! TTGGTGGAGTAGGGTTATTT+TGG + chr7.2:11888042-11888061 None:intergenic 40.0%
! TTTAGGCCTTATCTGTGTCA+GGG - chr7.2:11888715-11888734 MS.gene061914:CDS 40.0%
!! CTCAGATTAAGGTGATGGAA+GGG - chr7.2:11888635-11888654 MS.gene061914:CDS 40.0%
!! CTTCGAGTTGAAGCATTTCA+TGG - chr7.2:11888472-11888491 MS.gene061914:CDS 40.0%
!! GATGGAAGGGAATTTTTCAG+AGG - chr7.2:11888648-11888667 MS.gene061914:CDS 40.0%
!! TGGTGGAGTAGGGTTATTTT+GGG + chr7.2:11888041-11888060 None:intergenic 40.0%
!! TTTTAGGCCTTATCTGTGTC+AGG - chr7.2:11888714-11888733 MS.gene061914:CDS 40.0%
!!! TTTGGGGTTTTTGAAACGCA+GGG + chr7.2:11888024-11888043 None:intergenic 40.0%
!!! TTTTGGGGTTTTTGAAACGC+AGG + chr7.2:11888025-11888044 None:intergenic 40.0%
AAATTCGAGAGGGAAGAAGC+TGG - chr7.2:11888874-11888893 MS.gene061914:CDS 45.0%
AGAAGAGAGAGGATAGGGTT+TGG + chr7.2:11888072-11888091 None:intergenic 45.0%
AGAGAGGATAGGGTTTGGAA+AGG + chr7.2:11888067-11888086 None:intergenic 45.0%
AGCTCTACGTGCTTTAATGG+AGG - chr7.2:11888279-11888298 MS.gene061914:CDS 45.0%
ATGCATGTGGTTTCAACGAC+GGG + chr7.2:11888097-11888116 None:intergenic 45.0%
CGTAGAGCTTCAGCATCATT+TGG + chr7.2:11888268-11888287 None:intergenic 45.0%
GAGAGGATAGGGTTTGGAAA+GGG + chr7.2:11888066-11888085 None:intergenic 45.0%
GATAGGGTTTGGAAAGGGTT+TGG + chr7.2:11888061-11888080 None:intergenic 45.0%
GATGCATGTGGTTTCAACGA+CGG + chr7.2:11888098-11888117 None:intergenic 45.0%
GGTTGCTCAGATTAAGGTGA+TGG - chr7.2:11888630-11888649 MS.gene061914:CDS 45.0%
GTTGTGATTGAGTGAGAGGT+TGG + chr7.2:11887882-11887901 None:intergenic 45.0%
TCTTCCCTCTCGAATTTCTG+CGG + chr7.2:11888871-11888890 None:intergenic 45.0%
TTTCCCGCAGAAATTCGAGA+GGG - chr7.2:11888864-11888883 MS.gene061914:CDS 45.0%
! CGTAACGGAAAATGCTACGA+CGG - chr7.2:11888198-11888217 MS.gene061914:CDS 45.0%
! CGTCGTAGCATTTTCCGTTA+CGG + chr7.2:11888200-11888219 None:intergenic 45.0%
! GTGATAAGGGGAATGATGGA+CGG + chr7.2:11887904-11887923 None:intergenic 45.0%
! TTTTCCCGCAGAAATTCGAG+AGG - chr7.2:11888863-11888882 MS.gene061914:CDS 45.0%
!! AGAGGCGCTTAAAGCTTATC+AGG - chr7.2:11888666-11888685 MS.gene061914:CDS 45.0%
!! GCTCAGATTAAGGTGATGGA+AGG - chr7.2:11888634-11888653 MS.gene061914:CDS 45.0%
!! GGTGGAGTAGGGTTATTTTG+GGG + chr7.2:11888040-11888059 None:intergenic 45.0%
!! TTGAAACGCAGGGTCGTTTT+GGG + chr7.2:11888014-11888033 None:intergenic 45.0%
!! TTTGAAACGCAGGGTCGTTT+TGG + chr7.2:11888015-11888034 None:intergenic 45.0%
AAAGGAGAGGGAGGGTGATA+AGG + chr7.2:11887918-11887937 None:intergenic 50.0%
AACGGAAAATGCTACGACGG+AGG - chr7.2:11888201-11888220 MS.gene061914:CDS 50.0%
AAGGAGAGGGAGGGTGATAA+GGG + chr7.2:11887917-11887936 None:intergenic 50.0%
ACGCATGAAGAAGAAAGCGG+TGG + chr7.2:11888131-11888150 None:intergenic 50.0%
AGGGTTTGGAAAGGGTTTGG+TGG + chr7.2:11888058-11888077 None:intergenic 50.0%
CATGAAGAAGAAAGCGGTGG+CGG + chr7.2:11888128-11888147 None:intergenic 50.0%
CTTCCCTCTCGAATTTCTGC+GGG + chr7.2:11888870-11888889 None:intergenic 50.0%
GAAGCTTGAACGAGGATGGA+GGG + chr7.2:11887970-11887989 None:intergenic 50.0%
GACGGTTGTGATTGAGTGAG+AGG + chr7.2:11887886-11887905 None:intergenic 50.0%
GAGGGTGATAAGGGGAATGA+TGG + chr7.2:11887908-11887927 None:intergenic 50.0%
GATTGGTGGAAGCTTGAACG+AGG + chr7.2:11887978-11887997 None:intergenic 50.0%
TGAGTGAGAGGTTGGAGTGA+CGG + chr7.2:11887874-11887893 None:intergenic 50.0%
TGCATGTGGTTTCAACGACG+GGG + chr7.2:11888096-11888115 None:intergenic 50.0%
TGGATGGGAACGAAAGGAGA+GGG + chr7.2:11887930-11887949 None:intergenic 50.0%
! CGTAGCATTTTCCGTTACGG+TGG + chr7.2:11888197-11888216 None:intergenic 50.0%
! GCATTTTCCGTTACGGTGGT+CGG + chr7.2:11888193-11888212 None:intergenic 50.0%
! TGGACTTGTGATGGCGAGTT+CGG - chr7.2:11888492-11888511 MS.gene061914:CDS 50.0%
!! GAATTGTGGTGGTGGTGGAT+GGG + chr7.2:11887945-11887964 None:intergenic 50.0%
!! GGAAAGGGTTTGGTGGAGTA+GGG + chr7.2:11888051-11888070 None:intergenic 50.0%
!! TGGAAAGGGTTTGGTGGAGT+AGG + chr7.2:11888052-11888071 None:intergenic 50.0%
!!! AGGGTCGTTTTGGGAAGATG+AGG + chr7.2:11888005-11888024 None:intergenic 50.0%
AGAGGGAAGAAGCTGGTGCT+AGG - chr7.2:11888881-11888900 MS.gene061914:CDS 55.0%
AGGAGAGGGAGGGTGATAAG+GGG + chr7.2:11887916-11887935 None:intergenic 55.0%
ATGGGAACGAAAGGAGAGGG+AGG + chr7.2:11887927-11887946 None:intergenic 55.0%
GAGGATGGAGGGAGGAATTG+TGG + chr7.2:11887959-11887978 None:intergenic 55.0%
GATGGAGGGAGGAATTGTGG+TGG + chr7.2:11887956-11887975 None:intergenic 55.0%
GCATGTGGTTTCAACGACGG+GGG + chr7.2:11888095-11888114 None:intergenic 55.0%
GGAAGCTTGAACGAGGATGG+AGG + chr7.2:11887971-11887990 None:intergenic 55.0%
GGGGGAGAAGAGAGAGGATA+GGG + chr7.2:11888077-11888096 None:intergenic 55.0%
GGTGGAAGCTTGAACGAGGA+TGG + chr7.2:11887974-11887993 None:intergenic 55.0%
GTGGATGGGAACGAAAGGAG+AGG + chr7.2:11887931-11887950 None:intergenic 55.0%
TGGGAACGAAAGGAGAGGGA+GGG + chr7.2:11887926-11887945 None:intergenic 55.0%
! AGGTTGGAGTGACGGAGGTT+GGG + chr7.2:11887866-11887885 None:intergenic 55.0%
! TTTTCCGTTACGGTGGTCGG+AGG + chr7.2:11888190-11888209 None:intergenic 55.0%
!! GGAATTGTGGTGGTGGTGGA+TGG + chr7.2:11887946-11887965 None:intergenic 55.0%
!! TGGTGGTGGATGGGAACGAA+AGG + chr7.2:11887936-11887955 None:intergenic 55.0%
AACGACGGGGGAGAAGAGAG+AGG + chr7.2:11888083-11888102 None:intergenic 60.0%
CGGGGGAGAAGAGAGAGGAT+AGG + chr7.2:11888078-11888097 None:intergenic 60.0%
CTCTCCTCCGACCACCGTAA+CGG - chr7.2:11888183-11888202 MS.gene061914:CDS 60.0%
GCTTGAACGAGGATGGAGGG+AGG + chr7.2:11887967-11887986 None:intergenic 60.0%
GGAGGGAGGAATTGTGGTGG+TGG + chr7.2:11887953-11887972 None:intergenic 60.0%
GGCGGCGATAACGATGCATG+TGG + chr7.2:11888110-11888129 None:intergenic 60.0%
GTGAGAGGTTGGAGTGACGG+AGG + chr7.2:11887871-11887890 None:intergenic 60.0%
! CGGCGATGACAGGAGTGTGA+TGG + chr7.2:11888156-11888175 None:intergenic 60.0%
! GAGGTTGGAGTGACGGAGGT+TGG + chr7.2:11887867-11887886 None:intergenic 60.0%
! GGAGTGACGGAGGTTGGGTA+TGG + chr7.2:11887861-11887880 None:intergenic 60.0%
!! GGGAGGAATTGTGGTGGTGG+TGG + chr7.2:11887950-11887969 None:intergenic 60.0%
GAGAGAGTGGCGGCGATGAC+AGG + chr7.2:11888166-11888185 None:intergenic 65.0%
GGTCGGAGGAGAGAGAGTGG+CGG + chr7.2:11888176-11888195 None:intergenic 65.0%
GGTGGTCGGAGGAGAGAGAG+TGG + chr7.2:11888179-11888198 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 11887851 11888909 11887851 ID=MS.gene061914
chr7.2 mRNA 11887851 11888909 11887851 ID=MS.gene061914.t1;Parent=MS.gene061914
chr7.2 exon 11887851 11888909 11887851 ID=MS.gene061914.t1.exon1;Parent=MS.gene061914.t1
chr7.2 CDS 11887851 11888909 11887851 ID=cds.MS.gene061914.t1;Parent=MS.gene061914.t1
Gene Sequence

>MS.gene061914

ATGAATTCCATACCCAACCTCCGTCACTCCAACCTCTCACTCAATCACAACCGTCCATCATTCCCCTTATCACCCTCCCTCTCCTTTCGTTCCCATCCACCACCACCACAATTCCTCCCTCCATCCTCGTTCAAGCTTCCACCAATCAAATCCTCATCTTCCCAAAACGACCCTGCGTTTCAAAAACCCCAAAATAACCCTACTCCACCAAACCCTTTCCAAACCCTATCCTCTCTCTTCTCCCCCGTCGTTGAAACCACATGCATCGTTATCGCCGCCACCGCTTTCTTCTTCATGCGTTTCCATCACACTCCTGTCATCGCCGCCACTCTCTCTCCTCCGACCACCGTAACGGAAAATGCTACGACGGAGGAAGATGCTGAGAAGATAATTCAAGAGAAATTGACCGAAAATCCAAATGATGCTGAAGCTCTACGTGCTTTAATGGAGGTGAAAATCAAAGCTAGAAAAATTGATGAAGCGATTGGTGTTATAGACCGTTTGATTGAAATTGAACCTGAAGAAATGGAGTGGCAATTGTTGAAGGCGAATATGTATATCTACAACGATGACCATGAATCTGCTAAGAAATTGTTTGAGGAGATTTTGAAGAAAGATCCGCTTCGAGTTGAAGCATTTCATGGACTTGTGATGGCGAGTTCGGAATCGAATGAACAATCTGATGAACCGTTGAAAGGATTGTTAAAGAGAGTTGAAAAAGCAATGGAGTTGTGCAAGAAACAGAAGAAGGTTTCGGATGTTAGGGATTTTAGGTTATTGGTTGCTCAGATTAAGGTGATGGAAGGGAATTTTTCAGAGGCGCTTAAAGCTTATCAGGATTTGGTGAAAGAAGAACCGAGAGATTTTAGGCCTTATCTGTGTCAGGGTATTATATATACCTTGCTTAGAAAGAAAGATGAAGCGGAGAAGCAATTCGATCAGTTTCGAAAGCTTGTCCCGAAGAATCATCCTTATAAAGAGTATTTTGATGATAACATGAATGGTACAAATTTTTTCCCGCAGAAATTCGAGAGGGAAGAAGCTGGTGCTAGGAGTTGA
Protein sequence

>MS.gene061914.t1

MNSIPNLRHSNLSLNHNRPSFPLSPSLSFRSHPPPPQFLPPSSFKLPPIKSSSSQNDPAFQKPQNNPTPPNPFQTLSSLFSPVVETTCIVIAATAFFFMRFHHTPVIAATLSPPTTVTENATTEEDAEKIIQEKLTENPNDAEALRALMEVKIKARKIDEAIGVIDRLIEIEPEEMEWQLLKANMYIYNDDHESAKKLFEEILKKDPLRVEAFHGLVMASSESNEQSDEPLKGLLKRVEKAMELCKKQKKVSDVRDFRLLVAQIKVMEGNFSEALKAYQDLVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDQFRKLVPKNHPYKEYFDDNMNGTNFFPQKFEREEAGARS