AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09833

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09833.t1 MTR_7g100328 98.295 352 5 1 1 352 1 351 0.0 707
MS.gene09833.t1 MTR_1g067600 46.286 350 157 9 1 332 1 337 1.34e-81 253
MS.gene09833.t1 MTR_3g095070 36.458 288 154 7 68 346 57 324 3.87e-49 168
MS.gene09833.t1 MTR_8g101290 29.536 237 135 10 58 284 80 294 6.02e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09833.t1 AT3G53560 63.043 230 80 2 119 348 108 332 3.80e-96 289
MS.gene09833.t1 AT2G37400 54.745 274 112 3 83 348 63 332 4.85e-96 289
MS.gene09833.t1 AT3G53560 63.043 230 80 2 119 348 156 380 7.85e-96 290
MS.gene09833.t1 AT5G02590 43.988 341 141 7 11 337 15 319 2.40e-85 261
MS.gene09833.t1 AT3G09490 44.279 201 108 1 127 327 98 294 2.45e-52 176
MS.gene09833.t1 AT4G39470 32.927 328 178 8 6 331 29 316 6.58e-52 176
MS.gene09833.t1 AT3G18420 33.110 299 166 7 49 339 38 310 5.11e-46 159

Find 94 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGGAGTAGGGTTATTT+TGG 0.204717 7.1:-7397716 None:intergenic
GTTATTGGTTGCTCAGATTA+AGG 0.260166 7.1:+7398301 MS.gene09833:CDS
AGAAGAAGGTTTCGGATGTT+AGG 0.266026 7.1:+7398270 MS.gene09833:CDS
AAGGAGAGGGAGGGTGATAA+GGG 0.280767 7.1:-7397591 None:intergenic
CTTCGAGTTGAAGCATTTCA+TGG 0.282568 7.1:+7398149 MS.gene09833:CDS
TTTGAAACGCAGGGTCGTTT+TGG 0.296089 7.1:-7397689 None:intergenic
TCATCAAAATACTCTTTATA+AGG 0.300941 7.1:-7398497 None:intergenic
AGAGGCGCTTAAAGCTTATC+AGG 0.305548 7.1:+7398343 MS.gene09833:CDS
ACAATTTCTTAGCAGATTCA+TGG 0.328436 7.1:-7398100 None:intergenic
AAAGGAGAGGGAGGGTGATA+AGG 0.331906 7.1:-7397592 None:intergenic
CGTAGAGCTTCAGCATCATT+TGG 0.335421 7.1:-7397942 None:intergenic
TGGAAAGGGTTTGGTGGAGT+AGG 0.342617 7.1:-7397726 None:intergenic
TCTTTATAAGGATGATTCTT+CGG 0.343610 7.1:-7398485 None:intergenic
GCTTAAAGCTTATCAGGATT+TGG 0.343744 7.1:+7398349 MS.gene09833:CDS
TGAAGCTCTACGTGCTTTAA+TGG 0.348747 7.1:+7397953 MS.gene09833:CDS
CTTTATAAGGATGATTCTTC+GGG 0.354190 7.1:-7398484 None:intergenic
GGGAGGAATTGTGGTGGTGG+TGG 0.373494 7.1:-7397624 None:intergenic
GGAGGGAGGAATTGTGGTGG+TGG 0.386933 7.1:-7397627 None:intergenic
GGAATTGTGGTGGTGGTGGA+TGG 0.389269 7.1:-7397620 None:intergenic
AGAAGAGAGAGGATAGGGTT+TGG 0.397563 7.1:-7397746 None:intergenic
TGGACTTGTGATGGCGAGTT+CGG 0.402706 7.1:+7398169 MS.gene09833:CDS
CAGGTTCAATTTCAATCAAA+CGG 0.412642 7.1:-7398025 None:intergenic
GGAAAGGGTTTGGTGGAGTA+GGG 0.413750 7.1:-7397725 None:intergenic
GAGAGGATAGGGTTTGGAAA+GGG 0.419757 7.1:-7397740 None:intergenic
AATTGCCACTCCATTTCTTC+AGG 0.420552 7.1:-7398044 None:intergenic
TGAAATTGAACCTGAAGAAA+TGG 0.424458 7.1:+7398034 MS.gene09833:CDS
TGGGAAGATGAGGATTTGAT+TGG 0.425612 7.1:-7397669 None:intergenic
GATAGGGTTTGGAAAGGGTT+TGG 0.426503 7.1:-7397735 None:intergenic
GAAGAAGGTTTCGGATGTTA+GGG 0.426707 7.1:+7398271 MS.gene09833:CDS
GAGGTTGGGTATGGAATTCA+TGG 0.443970 7.1:-7397526 None:intergenic
GAGGTTGGAGTGACGGAGGT+TGG 0.447670 7.1:-7397541 None:intergenic
GAGGGTGATAAGGGGAATGA+TGG 0.448818 7.1:-7397582 None:intergenic
CAAGAAACAGAAGAAGGTTT+CGG 0.449162 7.1:+7398262 MS.gene09833:CDS
GAGAGAGTGGCGGCGATGAC+AGG 0.450025 7.1:-7397840 None:intergenic
ATCTGCTAAGAAATTGTTTG+AGG 0.450418 7.1:+7398106 MS.gene09833:CDS
AGGTTGGAGTGACGGAGGTT+GGG 0.454356 7.1:-7397540 None:intergenic
AGAGAGGATAGGGTTTGGAA+AGG 0.455764 7.1:-7397741 None:intergenic
CTTCCCTCTCGAATTTCTGC+GGG 0.460361 7.1:-7398544 None:intergenic
ATGCATGTGGTTTCAACGAC+GGG 0.470057 7.1:-7397771 None:intergenic
GAATTGTGGTGGTGGTGGAT+GGG 0.471518 7.1:-7397619 None:intergenic
GGAGTGACGGAGGTTGGGTA+TGG 0.475825 7.1:-7397535 None:intergenic
TTCATCTTTCTTTCTAAGCA+AGG 0.478456 7.1:-7398426 None:intergenic
GAGGATGGAGGGAGGAATTG+TGG 0.483001 7.1:-7397633 None:intergenic
AGGGTTTGGAAAGGGTTTGG+TGG 0.514075 7.1:-7397732 None:intergenic
AATGGAGTGGCAATTGTTGA+AGG 0.525932 7.1:+7398052 MS.gene09833:CDS
CTCTTTAACAATCCTTTCAA+CGG 0.526642 7.1:-7398215 None:intergenic
GTTGTGATTGAGTGAGAGGT+TGG 0.527474 7.1:-7397556 None:intergenic
GAAGATGAGGATTTGATTGG+TGG 0.529899 7.1:-7397666 None:intergenic
AGAGGGAAGAAGCTGGTGCT+AGG 0.536510 7.1:+7398558 MS.gene09833:CDS
GGTTGCTCAGATTAAGGTGA+TGG 0.536546 7.1:+7398307 MS.gene09833:CDS
ATGGGAACGAAAGGAGAGGG+AGG 0.539050 7.1:-7397601 None:intergenic
CATGAAGAAGAAAGCGGTGG+CGG 0.540016 7.1:-7397802 None:intergenic
CTCTCCTCCGACCACCGTAA+CGG 0.540098 7.1:+7397860 MS.gene09833:CDS
TGAGTGAGAGGTTGGAGTGA+CGG 0.540138 7.1:-7397548 None:intergenic
GGTGGAAGCTTGAACGAGGA+TGG 0.546675 7.1:-7397648 None:intergenic
AGGAGAGGGAGGGTGATAAG+GGG 0.549745 7.1:-7397590 None:intergenic
TCTTCCCTCTCGAATTTCTG+CGG 0.553717 7.1:-7398545 None:intergenic
CAATCTGATGAACCGTTGAA+AGG 0.557133 7.1:+7398203 MS.gene09833:CDS
TGGATGGGAACGAAAGGAGA+GGG 0.557548 7.1:-7397604 None:intergenic
TGGTGGTGGATGGGAACGAA+AGG 0.558966 7.1:-7397610 None:intergenic
GACGGTTGTGATTGAGTGAG+AGG 0.560939 7.1:-7397560 None:intergenic
ATAATACCCTGACACAGATA+AGG 0.564227 7.1:-7398398 None:intergenic
GAAGCTTGAACGAGGATGGA+GGG 0.567512 7.1:-7397644 None:intergenic
GTGGATGGGAACGAAAGGAG+AGG 0.569834 7.1:-7397605 None:intergenic
AACGGAAAATGCTACGACGG+AGG 0.575798 7.1:+7397878 MS.gene09833:CDS
GCTCAGATTAAGGTGATGGA+AGG 0.579155 7.1:+7398311 MS.gene09833:CDS
GTGATAAGGGGAATGATGGA+CGG 0.584735 7.1:-7397578 None:intergenic
AGATAAGGCCTAAAATCTCT+CGG 0.585108 7.1:-7398383 None:intergenic
GGAAGCTTGAACGAGGATGG+AGG 0.588597 7.1:-7397645 None:intergenic
TTTAGGCCTTATCTGTGTCA+GGG 0.591449 7.1:+7398392 MS.gene09833:CDS
CGGCGATGACAGGAGTGTGA+TGG 0.592621 7.1:-7397830 None:intergenic
AGCATTTCATGGACTTGTGA+TGG 0.594852 7.1:+7398160 MS.gene09833:CDS
GTTGTGCAAGAAACAGAAGA+AGG 0.595826 7.1:+7398256 MS.gene09833:CDS
AAATTCGAGAGGGAAGAAGC+TGG 0.597290 7.1:+7398551 MS.gene09833:CDS
GTGAGAGGTTGGAGTGACGG+AGG 0.609583 7.1:-7397545 None:intergenic
TGGGAACGAAAGGAGAGGGA+GGG 0.616150 7.1:-7397600 None:intergenic
GCTTAGAAAGAAAGATGAAG+CGG 0.617032 7.1:+7398430 MS.gene09833:CDS
CTCAGATTAAGGTGATGGAA+GGG 0.621477 7.1:+7398312 MS.gene09833:CDS
TGAAATGCTTCAACTCGAAG+CGG 0.637606 7.1:-7398146 None:intergenic
TTGAACCTGAAGAAATGGAG+TGG 0.639379 7.1:+7398039 MS.gene09833:CDS
GCTTGAACGAGGATGGAGGG+AGG 0.643989 7.1:-7397641 None:intergenic
GGTGGTCGGAGGAGAGAGAG+TGG 0.645390 7.1:-7397853 None:intergenic
GATGCATGTGGTTTCAACGA+CGG 0.656165 7.1:-7397772 None:intergenic
AGCTCTACGTGCTTTAATGG+AGG 0.672443 7.1:+7397956 MS.gene09833:CDS
GGCGGCGATAACGATGCATG+TGG 0.673470 7.1:-7397784 None:intergenic
CGTAACGGAAAATGCTACGA+CGG 0.678661 7.1:+7397875 MS.gene09833:CDS
TGCATGTGGTTTCAACGACG+GGG 0.681809 7.1:-7397770 None:intergenic
TTTCCCGCAGAAATTCGAGA+GGG 0.688033 7.1:+7398541 MS.gene09833:CDS
GATGGAGGGAGGAATTGTGG+TGG 0.694212 7.1:-7397630 None:intergenic
GATTGGTGGAAGCTTGAACG+AGG 0.699317 7.1:-7397652 None:intergenic
GAAACGCATGAAGAAGAAAG+CGG 0.702638 7.1:-7397808 None:intergenic
GCATGTGGTTTCAACGACGG+GGG 0.706740 7.1:-7397769 None:intergenic
ACGCATGAAGAAGAAAGCGG+TGG 0.712874 7.1:-7397805 None:intergenic
GGTCGGAGGAGAGAGAGTGG+CGG 0.713800 7.1:-7397850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATACTCTTTATA+AGG - chr7.1:7398500-7398519 None:intergenic 20.0%
!!! TATTTTGATGATAACATGAA+TGG + chr7.1:7398509-7398528 MS.gene09833:CDS 20.0%
! TCTTTATAAGGATGATTCTT+CGG - chr7.1:7398488-7398507 None:intergenic 25.0%
AAAGAGAGTTGAAAAAGCAA+TGG + chr7.1:7398232-7398251 MS.gene09833:CDS 30.0%
ACAATTTCTTAGCAGATTCA+TGG - chr7.1:7398103-7398122 None:intergenic 30.0%
AGAAAAATTGATGAAGCGAT+TGG + chr7.1:7397993-7398012 MS.gene09833:CDS 30.0%
ATCTGCTAAGAAATTGTTTG+AGG + chr7.1:7398106-7398125 MS.gene09833:CDS 30.0%
CAGGTTCAATTTCAATCAAA+CGG - chr7.1:7398028-7398047 None:intergenic 30.0%
CTCTTTAACAATCCTTTCAA+CGG - chr7.1:7398218-7398237 None:intergenic 30.0%
CTTTATAAGGATGATTCTTC+GGG - chr7.1:7398487-7398506 None:intergenic 30.0%
TGAAATTGAACCTGAAGAAA+TGG + chr7.1:7398034-7398053 MS.gene09833:CDS 30.0%
TTCATCTTTCTTTCTAAGCA+AGG - chr7.1:7398429-7398448 None:intergenic 30.0%
! TTCAGCATCATTTGGATTTT+CGG - chr7.1:7397937-7397956 None:intergenic 30.0%
!!! TGTTAGGGATTTTAGGTTAT+TGG + chr7.1:7398286-7398305 MS.gene09833:CDS 30.0%
AGATAAGGCCTAAAATCTCT+CGG - chr7.1:7398386-7398405 None:intergenic 35.0%
ATAATACCCTGACACAGATA+AGG - chr7.1:7398401-7398420 None:intergenic 35.0%
CAAGAAACAGAAGAAGGTTT+CGG + chr7.1:7398262-7398281 MS.gene09833:CDS 35.0%
GCTTAAAGCTTATCAGGATT+TGG + chr7.1:7398349-7398368 MS.gene09833:CDS 35.0%
GCTTAGAAAGAAAGATGAAG+CGG + chr7.1:7398430-7398449 MS.gene09833:CDS 35.0%
! AAGAAGAACCGAGAGATTTT+AGG + chr7.1:7398375-7398394 MS.gene09833:CDS 35.0%
! GTTATTGGTTGCTCAGATTA+AGG + chr7.1:7398301-7398320 MS.gene09833:CDS 35.0%
! TTTCGGATGTTAGGGATTTT+AGG + chr7.1:7398279-7398298 MS.gene09833:CDS 35.0%
AATGGAGTGGCAATTGTTGA+AGG + chr7.1:7398052-7398071 MS.gene09833:CDS 40.0%
AATTGCCACTCCATTTCTTC+AGG - chr7.1:7398047-7398066 None:intergenic 40.0%
AGAAGAAGGTTTCGGATGTT+AGG + chr7.1:7398270-7398289 MS.gene09833:CDS 40.0%
AGCATTTCATGGACTTGTGA+TGG + chr7.1:7398160-7398179 MS.gene09833:CDS 40.0%
CAATCTGATGAACCGTTGAA+AGG + chr7.1:7398203-7398222 MS.gene09833:CDS 40.0%
GAAACGCATGAAGAAGAAAG+CGG - chr7.1:7397811-7397830 None:intergenic 40.0%
GAAGAAGGTTTCGGATGTTA+GGG + chr7.1:7398271-7398290 MS.gene09833:CDS 40.0%
GAAGATGAGGATTTGATTGG+TGG - chr7.1:7397669-7397688 None:intergenic 40.0%
GTTGTGCAAGAAACAGAAGA+AGG + chr7.1:7398256-7398275 MS.gene09833:CDS 40.0%
TGAAATGCTTCAACTCGAAG+CGG - chr7.1:7398149-7398168 None:intergenic 40.0%
TGAAGCTCTACGTGCTTTAA+TGG + chr7.1:7397953-7397972 MS.gene09833:CDS 40.0%
TGGGAAGATGAGGATTTGAT+TGG - chr7.1:7397672-7397691 None:intergenic 40.0%
TTGAACCTGAAGAAATGGAG+TGG + chr7.1:7398039-7398058 MS.gene09833:CDS 40.0%
! TTGGTGGAGTAGGGTTATTT+TGG - chr7.1:7397719-7397738 None:intergenic 40.0%
! TTTAGGCCTTATCTGTGTCA+GGG + chr7.1:7398392-7398411 MS.gene09833:CDS 40.0%
!! CTCAGATTAAGGTGATGGAA+GGG + chr7.1:7398312-7398331 MS.gene09833:CDS 40.0%
!! CTTCGAGTTGAAGCATTTCA+TGG + chr7.1:7398149-7398168 MS.gene09833:CDS 40.0%
!! GATGGAAGGGAATTTTTCAG+AGG + chr7.1:7398325-7398344 MS.gene09833:CDS 40.0%
!! TGGTGGAGTAGGGTTATTTT+GGG - chr7.1:7397718-7397737 None:intergenic 40.0%
!! TTTTAGGCCTTATCTGTGTC+AGG + chr7.1:7398391-7398410 MS.gene09833:CDS 40.0%
!!! TTTGGGGTTTTTGAAACGCA+GGG - chr7.1:7397701-7397720 None:intergenic 40.0%
!!! TTTTGGGGTTTTTGAAACGC+AGG - chr7.1:7397702-7397721 None:intergenic 40.0%
AAATTCGAGAGGGAAGAAGC+TGG + chr7.1:7398551-7398570 MS.gene09833:CDS 45.0%
AGAAGAGAGAGGATAGGGTT+TGG - chr7.1:7397749-7397768 None:intergenic 45.0%
AGAGAGGATAGGGTTTGGAA+AGG - chr7.1:7397744-7397763 None:intergenic 45.0%
AGCTCTACGTGCTTTAATGG+AGG + chr7.1:7397956-7397975 MS.gene09833:CDS 45.0%
ATGCATGTGGTTTCAACGAC+GGG - chr7.1:7397774-7397793 None:intergenic 45.0%
CGTAGAGCTTCAGCATCATT+TGG - chr7.1:7397945-7397964 None:intergenic 45.0%
GAGAGGATAGGGTTTGGAAA+GGG - chr7.1:7397743-7397762 None:intergenic 45.0%
GATAGGGTTTGGAAAGGGTT+TGG - chr7.1:7397738-7397757 None:intergenic 45.0%
GATGCATGTGGTTTCAACGA+CGG - chr7.1:7397775-7397794 None:intergenic 45.0%
GGTTGCTCAGATTAAGGTGA+TGG + chr7.1:7398307-7398326 MS.gene09833:CDS 45.0%
GTTGTGATTGAGTGAGAGGT+TGG - chr7.1:7397559-7397578 None:intergenic 45.0%
TCTTCCCTCTCGAATTTCTG+CGG - chr7.1:7398548-7398567 None:intergenic 45.0%
TTTCCCGCAGAAATTCGAGA+GGG + chr7.1:7398541-7398560 MS.gene09833:CDS 45.0%
! CGTAACGGAAAATGCTACGA+CGG + chr7.1:7397875-7397894 MS.gene09833:CDS 45.0%
! CGTCGTAGCATTTTCCGTTA+CGG - chr7.1:7397877-7397896 None:intergenic 45.0%
! GTGATAAGGGGAATGATGGA+CGG - chr7.1:7397581-7397600 None:intergenic 45.0%
! TTTTCCCGCAGAAATTCGAG+AGG + chr7.1:7398540-7398559 MS.gene09833:CDS 45.0%
!! AGAGGCGCTTAAAGCTTATC+AGG + chr7.1:7398343-7398362 MS.gene09833:CDS 45.0%
!! GCTCAGATTAAGGTGATGGA+AGG + chr7.1:7398311-7398330 MS.gene09833:CDS 45.0%
!! GGTGGAGTAGGGTTATTTTG+GGG - chr7.1:7397717-7397736 None:intergenic 45.0%
!! TTGAAACGCAGGGTCGTTTT+GGG - chr7.1:7397691-7397710 None:intergenic 45.0%
!! TTTGAAACGCAGGGTCGTTT+TGG - chr7.1:7397692-7397711 None:intergenic 45.0%
AAAGGAGAGGGAGGGTGATA+AGG - chr7.1:7397595-7397614 None:intergenic 50.0%
AACGGAAAATGCTACGACGG+AGG + chr7.1:7397878-7397897 MS.gene09833:CDS 50.0%
AAGGAGAGGGAGGGTGATAA+GGG - chr7.1:7397594-7397613 None:intergenic 50.0%
ACGCATGAAGAAGAAAGCGG+TGG - chr7.1:7397808-7397827 None:intergenic 50.0%
AGGGTTTGGAAAGGGTTTGG+TGG - chr7.1:7397735-7397754 None:intergenic 50.0%
CATGAAGAAGAAAGCGGTGG+CGG - chr7.1:7397805-7397824 None:intergenic 50.0%
CTTCCCTCTCGAATTTCTGC+GGG - chr7.1:7398547-7398566 None:intergenic 50.0%
GAAGCTTGAACGAGGATGGA+GGG - chr7.1:7397647-7397666 None:intergenic 50.0%
GACGGTTGTGATTGAGTGAG+AGG - chr7.1:7397563-7397582 None:intergenic 50.0%
GAGGGTGATAAGGGGAATGA+TGG - chr7.1:7397585-7397604 None:intergenic 50.0%
GATTGGTGGAAGCTTGAACG+AGG - chr7.1:7397655-7397674 None:intergenic 50.0%
TGAGTGAGAGGTTGGAGTGA+CGG - chr7.1:7397551-7397570 None:intergenic 50.0%
TGCATGTGGTTTCAACGACG+GGG - chr7.1:7397773-7397792 None:intergenic 50.0%
TGGATGGGAACGAAAGGAGA+GGG - chr7.1:7397607-7397626 None:intergenic 50.0%
! CGTAGCATTTTCCGTTACGG+TGG - chr7.1:7397874-7397893 None:intergenic 50.0%
! GCATTTTCCGTTACGGTGGT+CGG - chr7.1:7397870-7397889 None:intergenic 50.0%
! TGGACTTGTGATGGCGAGTT+CGG + chr7.1:7398169-7398188 MS.gene09833:CDS 50.0%
!! GAATTGTGGTGGTGGTGGAT+GGG - chr7.1:7397622-7397641 None:intergenic 50.0%
!! GGAAAGGGTTTGGTGGAGTA+GGG - chr7.1:7397728-7397747 None:intergenic 50.0%
!! TGGAAAGGGTTTGGTGGAGT+AGG - chr7.1:7397729-7397748 None:intergenic 50.0%
!!! AGGGTCGTTTTGGGAAGATG+AGG - chr7.1:7397682-7397701 None:intergenic 50.0%
AGAGGGAAGAAGCTGGTGCT+AGG + chr7.1:7398558-7398577 MS.gene09833:CDS 55.0%
AGGAGAGGGAGGGTGATAAG+GGG - chr7.1:7397593-7397612 None:intergenic 55.0%
ATGGGAACGAAAGGAGAGGG+AGG - chr7.1:7397604-7397623 None:intergenic 55.0%
GAGGATGGAGGGAGGAATTG+TGG - chr7.1:7397636-7397655 None:intergenic 55.0%
GATGGAGGGAGGAATTGTGG+TGG - chr7.1:7397633-7397652 None:intergenic 55.0%
GCATGTGGTTTCAACGACGG+GGG - chr7.1:7397772-7397791 None:intergenic 55.0%
GGAAGCTTGAACGAGGATGG+AGG - chr7.1:7397648-7397667 None:intergenic 55.0%
GGGGGAGAAGAGAGAGGATA+GGG - chr7.1:7397754-7397773 None:intergenic 55.0%
GGTGGAAGCTTGAACGAGGA+TGG - chr7.1:7397651-7397670 None:intergenic 55.0%
GTGGATGGGAACGAAAGGAG+AGG - chr7.1:7397608-7397627 None:intergenic 55.0%
TGGGAACGAAAGGAGAGGGA+GGG - chr7.1:7397603-7397622 None:intergenic 55.0%
! AGGTTGGAGTGACGGAGGTT+GGG - chr7.1:7397543-7397562 None:intergenic 55.0%
! TTTTCCGTTACGGTGGTCGG+AGG - chr7.1:7397867-7397886 None:intergenic 55.0%
!! GGAATTGTGGTGGTGGTGGA+TGG - chr7.1:7397623-7397642 None:intergenic 55.0%
!! TGGTGGTGGATGGGAACGAA+AGG - chr7.1:7397613-7397632 None:intergenic 55.0%
AACGACGGGGGAGAAGAGAG+AGG - chr7.1:7397760-7397779 None:intergenic 60.0%
CGGGGGAGAAGAGAGAGGAT+AGG - chr7.1:7397755-7397774 None:intergenic 60.0%
CTCTCCTCCGACCACCGTAA+CGG + chr7.1:7397860-7397879 MS.gene09833:CDS 60.0%
GCTTGAACGAGGATGGAGGG+AGG - chr7.1:7397644-7397663 None:intergenic 60.0%
GGAGGGAGGAATTGTGGTGG+TGG - chr7.1:7397630-7397649 None:intergenic 60.0%
GGCGGCGATAACGATGCATG+TGG - chr7.1:7397787-7397806 None:intergenic 60.0%
GTGAGAGGTTGGAGTGACGG+AGG - chr7.1:7397548-7397567 None:intergenic 60.0%
! CGGCGATGACAGGAGTGTGA+TGG - chr7.1:7397833-7397852 None:intergenic 60.0%
! GAGGTTGGAGTGACGGAGGT+TGG - chr7.1:7397544-7397563 None:intergenic 60.0%
! GGAGTGACGGAGGTTGGGTA+TGG - chr7.1:7397538-7397557 None:intergenic 60.0%
!! GGGAGGAATTGTGGTGGTGG+TGG - chr7.1:7397627-7397646 None:intergenic 60.0%
GAGAGAGTGGCGGCGATGAC+AGG - chr7.1:7397843-7397862 None:intergenic 65.0%
GGTCGGAGGAGAGAGAGTGG+CGG - chr7.1:7397853-7397872 None:intergenic 65.0%
GGTGGTCGGAGGAGAGAGAG+TGG - chr7.1:7397856-7397875 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 7397528 7398586 7397528 ID=MS.gene09833
chr7.1 mRNA 7397528 7398586 7397528 ID=MS.gene09833.t1;Parent=MS.gene09833
chr7.1 exon 7397528 7398586 7397528 ID=MS.gene09833.t1.exon1;Parent=MS.gene09833.t1
chr7.1 CDS 7397528 7398586 7397528 ID=cds.MS.gene09833.t1;Parent=MS.gene09833.t1
Gene Sequence

>MS.gene09833

ATGAATTCCATACCCAACCTCCGTCACTCCAACCTCTCACTCAATCACAACCGTCCATCATTCCCCTTATCACCCTCCCTCTCCTTTCGTTCCCATCCACCACCACCACAATTCCTCCCTCCATCCTCGTTCAAGCTTCCACCAATCAAATCCTCATCTTCCCAAAACGACCCTGCGTTTCAAAAACCCCAAAATAACCCTACTCCACCAAACCCTTTCCAAACCCTATCCTCTCTCTTCTCCCCCGTCGTTGAAACCACATGCATCGTTATCGCCGCCACCGCTTTCTTCTTCATGCGTTTCCATCACACTCCTGTCATCGCCGCCACTCTCTCTCCTCCGACCACCGTAACGGAAAATGCTACGACGGAGGAAGATGCTGAGAAGATAATTCAAGAGAAATTGACCGAAAATCCAAATGATGCTGAAGCTCTACGTGCTTTAATGGAGGTGAAAATCAAAGCTAGAAAAATTGATGAAGCGATTGGTGTTATAGACCGTTTGATTGAAATTGAACCTGAAGAAATGGAGTGGCAATTGTTGAAGGCGAATATGTATATCTACAACGATGACCATGAATCTGCTAAGAAATTGTTTGAGGAGATTTTGAAGAAAGATCCGCTTCGAGTTGAAGCATTTCATGGACTTGTGATGGCGAGTTCGGAATCGAATGAACAATCTGATGAACCGTTGAAAGGATTGTTAAAGAGAGTTGAAAAAGCAATGGAGTTGTGCAAGAAACAGAAGAAGGTTTCGGATGTTAGGGATTTTAGGTTATTGGTTGCTCAGATTAAGGTGATGGAAGGGAATTTTTCAGAGGCGCTTAAAGCTTATCAGGATTTGGTGAAAGAAGAACCGAGAGATTTTAGGCCTTATCTGTGTCAGGGTATTATATATACCTTGCTTAGAAAGAAAGATGAAGCGGAGAAGCAATTCGATCAGTTTCGAAAGCTTGTCCCGAAGAATCATCCTTATAAAGAGTATTTTGATGATAACATGAATGGTACAAATTTTTTCCCGCAGAAATTCGAGAGGGAAGAAGCTGGTGCTAGGAGTTGA
Protein sequence

>MS.gene09833.t1

MNSIPNLRHSNLSLNHNRPSFPLSPSLSFRSHPPPPQFLPPSSFKLPPIKSSSSQNDPAFQKPQNNPTPPNPFQTLSSLFSPVVETTCIVIAATAFFFMRFHHTPVIAATLSPPTTVTENATTEEDAEKIIQEKLTENPNDAEALRALMEVKIKARKIDEAIGVIDRLIEIEPEEMEWQLLKANMYIYNDDHESAKKLFEEILKKDPLRVEAFHGLVMASSESNEQSDEPLKGLLKRVEKAMELCKKQKKVSDVRDFRLLVAQIKVMEGNFSEALKAYQDLVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDQFRKLVPKNHPYKEYFDDNMNGTNFFPQKFEREEAGARS