Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013494.t1 | XP_003602392.1 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 3.20E-196 | 694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013494.t1 | Q9XGN1 | 78.2 | 344 | 70 | 3 | 1 | 342 | 1 | 341 | 2.4e-155 | 549.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013494.t1 | B4XH97 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 2.3e-196 | 694.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51926 | MS.gene013494 | PPI |
| MS.gene013494 | MS.gene024336 | PPI |
| MS.gene52286 | MS.gene013494 | PPI |
| MS.gene013494 | MS.gene72217 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013494.t1 | MTR_3g092840 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 705 |
| MS.gene013494.t1 | MTR_7g084810 | 58.857 | 350 | 127 | 5 | 3 | 342 | 10 | 352 | 2.37e-148 | 422 |
| MS.gene013494.t1 | MTR_3g092830 | 86.957 | 92 | 12 | 0 | 251 | 342 | 1 | 92 | 1.80e-53 | 171 |
| MS.gene013494.t1 | MTR_2g016160 | 27.027 | 185 | 128 | 4 | 138 | 319 | 112 | 292 | 5.90e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013494.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene013494.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene013494.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene013494.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene013494.t1 | AT1G12910 | 60.790 | 329 | 120 | 4 | 18 | 342 | 23 | 346 | 1.61e-146 | 417 |
| MS.gene013494.t1 | AT3G26640 | 58.092 | 346 | 134 | 5 | 1 | 342 | 8 | 346 | 7.73e-145 | 413 |
| MS.gene013494.t1 | AT1G29260 | 28.646 | 192 | 130 | 4 | 131 | 319 | 104 | 291 | 7.01e-13 | 68.9 |
Find 108 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATGCTTCGAACTTCT+TGG | 0.223079 | 3.4:+84847548 | None:intergenic |
| TAGTAATAAAGTTGTGATTT+TGG | 0.231763 | 3.4:-84847645 | MS.gene013494:CDS |
| ATGATGCACAGGCTCTTATT+TGG | 0.239316 | 3.4:-84847514 | MS.gene013494:CDS |
| TTCCAATCAAAGGATGTTAA+AGG | 0.269478 | 3.4:+84847968 | None:intergenic |
| TTGACACTACTTGTACTATC+TGG | 0.291467 | 3.4:-84847910 | MS.gene013494:CDS |
| CTCCTTTAACATCCTTTGAT+TGG | 0.296600 | 3.4:-84847970 | MS.gene013494:CDS |
| AACTACACCGGTGGCGGAAT+TGG | 0.308686 | 3.4:-84847609 | MS.gene013494:CDS |
| GGCTCTTATTTGGGAGTTGC+CGG | 0.327141 | 3.4:-84847504 | MS.gene013494:CDS |
| GGATACCCCTTTGCTTCGTT+TGG | 0.334156 | 3.4:-84847714 | MS.gene013494:CDS |
| ACTTGAAGTTCCAATTCGTT+TGG | 0.338704 | 3.4:+84847934 | None:intergenic |
| AGTTCGAAGCATATTTGTTC+TGG | 0.340652 | 3.4:-84847542 | MS.gene013494:CDS |
| CCGGTGACTATCTCCGTCTC+TGG | 0.354504 | 3.4:-84848060 | MS.gene013494:CDS |
| TTTGCTTCGGTTTCTGCTGA+TGG | 0.360345 | 3.4:-84847803 | MS.gene013494:CDS |
| CCCCTTTGCTTCGTTTGGCT+TGG | 0.361608 | 3.4:-84847709 | MS.gene013494:CDS |
| GGTTTGAGTGAGAGTGTGTC+AGG | 0.364304 | 3.4:+84848190 | None:intergenic |
| GGTCTGCTGCTCAGCCTGAT+TGG | 0.373267 | 3.4:-84847409 | MS.gene013494:CDS |
| TGATGCACAGGCTCTTATTT+GGG | 0.374972 | 3.4:-84847513 | MS.gene013494:CDS |
| TTTCTGCTGATGGGTCTGTT+AGG | 0.375024 | 3.4:-84847793 | MS.gene013494:CDS |
| GTATGTTACGGAGTTGTTAT+CGG | 0.377404 | 3.4:+84848336 | None:intergenic |
| GAAATTGAGCCCAAACGAAT+TGG | 0.382415 | 3.4:-84847944 | MS.gene013494:CDS |
| CTGGTGTCAATGCGATTGCT+TGG | 0.387077 | 3.4:-84847574 | MS.gene013494:CDS |
| CTTGAAGTTCCAATTCGTTT+GGG | 0.388164 | 3.4:+84847935 | None:intergenic |
| ATGAGTTTGGTGGGTGGGTA+AGG | 0.390168 | 3.4:+84848142 | None:intergenic |
| AGAGGTTTATGATATTGCTT+GGG | 0.401590 | 3.4:-84847840 | MS.gene013494:CDS |
| GACATGGCGTAGAGTGGGTA+TGG | 0.409381 | 3.4:+84848307 | None:intergenic |
| AAGAGGTTTATGATATTGCT+TGG | 0.412325 | 3.4:-84847841 | MS.gene013494:CDS |
| TGTTGTGGGGAATTGGTGTT+GGG | 0.413984 | 3.4:+84848277 | None:intergenic |
| TTGTTGTGGGGAATTGGTGT+TGG | 0.414411 | 3.4:+84848276 | None:intergenic |
| GGAATTGGTGTTGGGAGAGA+TGG | 0.421413 | 3.4:+84848285 | None:intergenic |
| GATGCGTTGTTGTGGGGAAT+TGG | 0.430152 | 3.4:+84848270 | None:intergenic |
| TGGGAGTTGCCGGCTGTGGC+TGG | 0.434983 | 3.4:-84847494 | MS.gene013494:CDS |
| GTGTGTCAGGGTTGAAATTG+AGG | 0.439145 | 3.4:+84848203 | None:intergenic |
| CCGGCTGTGGCTGGTCCGAA+TGG | 0.451106 | 3.4:-84847485 | MS.gene013494:CDS |
| CTCAATTTCATTCCAATCAA+AGG | 0.452776 | 3.4:+84847958 | None:intergenic |
| TTCTGGTGGGGATGATGCAC+AGG | 0.454070 | 3.4:-84847525 | MS.gene013494:CDS |
| AAACGAAGCAAAGGGGTATC+CGG | 0.454376 | 3.4:+84847716 | None:intergenic |
| AGTTGTTATCGGATCGGAGA+TGG | 0.455221 | 3.4:+84848347 | None:intergenic |
| CCAGCAGAATACATAGTCAT+TGG | 0.462312 | 3.4:+84847455 | None:intergenic |
| GGCGGGATGGAACATGAGTT+TGG | 0.463020 | 3.4:+84848129 | None:intergenic |
| TTGCTTCGGTTTCTGCTGAT+GGG | 0.464907 | 3.4:-84847802 | MS.gene013494:CDS |
| TGGTGTCAATGCGATTGCTT+GGG | 0.476618 | 3.4:-84847573 | MS.gene013494:CDS |
| GTTAATTGCGCATGATAAAG+AGG | 0.479182 | 3.4:-84847858 | MS.gene013494:CDS |
| GGAACATGAGTTTGGTGGGT+GGG | 0.485922 | 3.4:+84848137 | None:intergenic |
| CGGCTGTGGCTGGTCCGAAT+GGG | 0.487137 | 3.4:-84847484 | MS.gene013494:CDS |
| GGTAGCGAGGAGGTCGGAGG+AGG | 0.491352 | 3.4:+84848084 | None:intergenic |
| CTTGGAACAAGAAGGATTTG+AGG | 0.491459 | 3.4:-84847691 | MS.gene013494:CDS |
| TCCGACCTCCTCGCTACCTC+CGG | 0.494753 | 3.4:-84848079 | MS.gene013494:CDS |
| TATTTGGGAGTTGCCGGCTG+TGG | 0.495883 | 3.4:-84847498 | MS.gene013494:CDS |
| AAAGCAATAGCAATCCAATC+AGG | 0.495960 | 3.4:+84847395 | None:intergenic |
| GTCATTGGATCAATCCCATT+CGG | 0.499402 | 3.4:+84847470 | None:intergenic |
| GTTGTTATCGGATCGGAGAT+GGG | 0.506009 | 3.4:+84848348 | None:intergenic |
| CCAACGGCGATGCGTTGTTG+TGG | 0.506615 | 3.4:+84848262 | None:intergenic |
| CAACGGCGATGCGTTGTTGT+GGG | 0.514389 | 3.4:+84848263 | None:intergenic |
| TGACACTACTTGTACTATCT+GGG | 0.515740 | 3.4:-84847909 | MS.gene013494:CDS |
| AGCAAAGGGGTATCCGGCTG+TGG | 0.516356 | 3.4:+84847722 | None:intergenic |
| TCGAAGGAGAGTGAAGGTTG+AGG | 0.520984 | 3.4:+84848169 | None:intergenic |
| GAAGCATATTTGTTCTGGTG+GGG | 0.522421 | 3.4:-84847537 | MS.gene013494:CDS |
| TCCAAGCCAAACGAAGCAAA+GGG | 0.522555 | 3.4:+84847708 | None:intergenic |
| AATTCCGCCACCGGTGTAGT+TGG | 0.525035 | 3.4:+84847611 | None:intergenic |
| TCGAAGCATATTTGTTCTGG+TGG | 0.528006 | 3.4:-84847539 | MS.gene013494:CDS |
| TCGTTTGGCTTGGAACAAGA+AGG | 0.528809 | 3.4:-84847699 | MS.gene013494:CDS |
| CGAAGCATATTTGTTCTGGT+GGG | 0.533772 | 3.4:-84847538 | MS.gene013494:CDS |
| CCATTCGGACCAGCCACAGC+CGG | 0.534014 | 3.4:+84847485 | None:intergenic |
| CGGTGACTATCTCCGTCTCT+GGG | 0.535569 | 3.4:-84848059 | MS.gene013494:CDS |
| GGTTTATGATATTGCTTGGG+GGG | 0.537143 | 3.4:-84847837 | MS.gene013494:CDS |
| TGTCTCTCCAATTCCGCCAC+CGG | 0.541299 | 3.4:+84847602 | None:intergenic |
| ACATGGCGTAGAGTGGGTAT+GGG | 0.541875 | 3.4:+84848308 | None:intergenic |
| TTCCAAGCCAAACGAAGCAA+AGG | 0.542040 | 3.4:+84847707 | None:intergenic |
| ATCACCAACTACACCGGTGG+CGG | 0.543805 | 3.4:-84847615 | MS.gene013494:CDS |
| CCAATGACTATGTATTCTGC+TGG | 0.558064 | 3.4:-84847455 | MS.gene013494:CDS |
| GTATGGGGAATCGTATGTTA+CGG | 0.558553 | 3.4:+84848324 | None:intergenic |
| GGAGGTAGCGAGGAGGTCGG+AGG | 0.571097 | 3.4:+84848081 | None:intergenic |
| CATGGCGTAGAGTGGGTATG+GGG | 0.571219 | 3.4:+84848309 | None:intergenic |
| TAAAGGAGCACAAAACTCAC+TGG | 0.571374 | 3.4:+84847985 | None:intergenic |
| GAGAAGAATGTGTGGCGGGA+TGG | 0.574788 | 3.4:+84848116 | None:intergenic |
| GTGAAATTAATCAGCTTCAG+TGG | 0.574954 | 3.4:-84847430 | MS.gene013494:CDS |
| CCACAACAACGCATCGCCGT+TGG | 0.579052 | 3.4:-84848262 | MS.gene013494:CDS |
| CCAGAGACGGAGATAGTCAC+CGG | 0.580223 | 3.4:+84848060 | None:intergenic |
| GTTTGAGTGAGAGTGTGTCA+GGG | 0.584476 | 3.4:+84848191 | None:intergenic |
| TGGAACATGAGTTTGGTGGG+TGG | 0.586765 | 3.4:+84848136 | None:intergenic |
| GATAGTCACCGGAGGTAGCG+AGG | 0.590791 | 3.4:+84848071 | None:intergenic |
| AATCTATGAGAGTCCACAGC+CGG | 0.591354 | 3.4:-84847735 | MS.gene013494:CDS |
| AGATGGACATGGCGTAGAGT+GGG | 0.592865 | 3.4:+84848302 | None:intergenic |
| GAGATGGACATGGCGTAGAG+TGG | 0.596359 | 3.4:+84848301 | None:intergenic |
| GGATGATCGAAGGAGAGTGA+AGG | 0.596401 | 3.4:+84848163 | None:intergenic |
| ACTATCTGGGACATTGAAAG+AGG | 0.599329 | 3.4:-84847896 | MS.gene013494:CDS |
| AACGGCGATGCGTTGTTGTG+GGG | 0.605737 | 3.4:+84848264 | None:intergenic |
| GGGATGGAACATGAGTTTGG+TGG | 0.607789 | 3.4:+84848132 | None:intergenic |
| GGATGGAACATGAGTTTGGT+GGG | 0.609593 | 3.4:+84848133 | None:intergenic |
| TGGAGAGAAGAATGTGTGGC+GGG | 0.613114 | 3.4:+84848112 | None:intergenic |
| TTTCGCGAACTTCCCAGAGA+CGG | 0.616480 | 3.4:+84848047 | None:intergenic |
| GAGGTTTATGATATTGCTTG+GGG | 0.618826 | 3.4:-84847839 | MS.gene013494:CDS |
| TTACGGAGTTGTTATCGGAT+CGG | 0.627468 | 3.4:+84848341 | None:intergenic |
| TATTAGATCACCAACTACAC+CGG | 0.632803 | 3.4:-84847621 | MS.gene013494:CDS |
| CTGGAGAGAAGAATGTGTGG+CGG | 0.637151 | 3.4:+84848111 | None:intergenic |
| TCGGAGATGGGATTCTTGTG+TGG | 0.641501 | 3.4:+84848360 | None:intergenic |
| GAATTGGAGAGACATCGTGC+TGG | 0.649925 | 3.4:-84847593 | MS.gene013494:CDS |
| GGGTGGGTAAGGATGATCGA+AGG | 0.652213 | 3.4:+84848153 | None:intergenic |
| ACCGGAGGTAGCGAGGAGGT+CGG | 0.660144 | 3.4:+84848078 | None:intergenic |
| TTCTTCGATGAAGCTACCAA+CGG | 0.661547 | 3.4:+84848246 | None:intergenic |
| TGAAATTGAGGATATCGATG+CGG | 0.685931 | 3.4:+84848215 | None:intergenic |
| TAGATCACCAACTACACCGG+TGG | 0.690300 | 3.4:-84847618 | MS.gene013494:CDS |
| TTTCTGGAGAGAAGAATGTG+TGG | 0.702519 | 3.4:+84848108 | None:intergenic |
| CCAAGCCAAACGAAGCAAAG+GGG | 0.704032 | 3.4:+84847709 | None:intergenic |
| GAGACGGAGATAGTCACCGG+AGG | 0.711536 | 3.4:+84848063 | None:intergenic |
| AGGTTTATGATATTGCTTGG+GGG | 0.720364 | 3.4:-84847838 | MS.gene013494:CDS |
| AGTCACCGGAGGTAGCGAGG+AGG | 0.732592 | 3.4:+84848074 | None:intergenic |
| GGTGTTGGGAGAGATGGACA+TGG | 0.772892 | 3.4:+84848291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTAATAAAGTTGTGATTT+TGG | - | chr3.4:84848089-84848108 | MS.gene013494:CDS | 20.0% |
| !!! | TGTTAGGATTTTTGATTTAA+GGG | - | chr3.4:84847957-84847976 | MS.gene013494:CDS | 20.0% |
| !! | TAATAAAATGCAGCTTTTGA+GGG | - | chr3.4:84848365-84848384 | MS.gene013494:CDS | 25.0% |
| !!! | CTGTTAGGATTTTTGATTTA+AGG | - | chr3.4:84847956-84847975 | MS.gene013494:CDS | 25.0% |
| AAGAGGTTTATGATATTGCT+TGG | - | chr3.4:84847893-84847912 | MS.gene013494:CDS | 30.0% | |
| AGAGGTTTATGATATTGCTT+GGG | - | chr3.4:84847894-84847913 | MS.gene013494:CDS | 30.0% | |
| CTCAATTTCATTCCAATCAA+AGG | + | chr3.4:84847779-84847798 | None:intergenic | 30.0% | |
| TTCCAATCAAAGGATGTTAA+AGG | + | chr3.4:84847769-84847788 | None:intergenic | 30.0% | |
| ! | CTAATAAAATGCAGCTTTTG+AGG | - | chr3.4:84848364-84848383 | MS.gene013494:CDS | 30.0% |
| ! | GTATATGTCGACAATTTTGA+TGG | - | chr3.4:84848065-84848084 | MS.gene013494:CDS | 30.0% |
| AAAGCAATAGCAATCCAATC+AGG | + | chr3.4:84848342-84848361 | None:intergenic | 35.0% | |
| ACTTGAAGTTCCAATTCGTT+TGG | + | chr3.4:84847803-84847822 | None:intergenic | 35.0% | |
| AGGTTTATGATATTGCTTGG+GGG | - | chr3.4:84847896-84847915 | MS.gene013494:CDS | 35.0% | |
| AGTTCGAAGCATATTTGTTC+TGG | - | chr3.4:84848192-84848211 | MS.gene013494:CDS | 35.0% | |
| CAAATATGCTTCGAACTTCT+TGG | + | chr3.4:84848189-84848208 | None:intergenic | 35.0% | |
| CTCCTTTAACATCCTTTGAT+TGG | - | chr3.4:84847764-84847783 | MS.gene013494:CDS | 35.0% | |
| CTTGAAGTTCCAATTCGTTT+GGG | + | chr3.4:84847802-84847821 | None:intergenic | 35.0% | |
| GAGGTTTATGATATTGCTTG+GGG | - | chr3.4:84847895-84847914 | MS.gene013494:CDS | 35.0% | |
| GTATGTTACGGAGTTGTTAT+CGG | + | chr3.4:84847401-84847420 | None:intergenic | 35.0% | |
| GTGAAATTAATCAGCTTCAG+TGG | - | chr3.4:84848304-84848323 | MS.gene013494:CDS | 35.0% | |
| GTTAATTGCGCATGATAAAG+AGG | - | chr3.4:84847876-84847895 | MS.gene013494:CDS | 35.0% | |
| TATTAGATCACCAACTACAC+CGG | - | chr3.4:84848113-84848132 | MS.gene013494:CDS | 35.0% | |
| TGAAATTGAGGATATCGATG+CGG | + | chr3.4:84847522-84847541 | None:intergenic | 35.0% | |
| TGACACTACTTGTACTATCT+GGG | - | chr3.4:84847825-84847844 | MS.gene013494:CDS | 35.0% | |
| TTGACACTACTTGTACTATC+TGG | - | chr3.4:84847824-84847843 | MS.gene013494:CDS | 35.0% | |
| ATGATGCACAGGCTCTTATT+TGG | - | chr3.4:84848220-84848239 | MS.gene013494:CDS | 40.0% | |
| CCAATGACTATGTATTCTGC+TGG | - | chr3.4:84848279-84848298 | MS.gene013494:CDS | 40.0% | |
| CCAGCAGAATACATAGTCAT+TGG | + | chr3.4:84848282-84848301 | None:intergenic | 40.0% | |
| CGAAGCATATTTGTTCTGGT+GGG | - | chr3.4:84848196-84848215 | MS.gene013494:CDS | 40.0% | |
| CTTGGAACAAGAAGGATTTG+AGG | - | chr3.4:84848043-84848062 | MS.gene013494:CDS | 40.0% | |
| GAAATTGAGCCCAAACGAAT+TGG | - | chr3.4:84847790-84847809 | MS.gene013494:CDS | 40.0% | |
| GAAGCATATTTGTTCTGGTG+GGG | - | chr3.4:84848197-84848216 | MS.gene013494:CDS | 40.0% | |
| GGTTTATGATATTGCTTGGG+GGG | - | chr3.4:84847897-84847916 | MS.gene013494:CDS | 40.0% | |
| GTATGGGGAATCGTATGTTA+CGG | + | chr3.4:84847413-84847432 | None:intergenic | 40.0% | |
| GTCATTGGATCAATCCCATT+CGG | + | chr3.4:84848267-84848286 | None:intergenic | 40.0% | |
| TCGAAGCATATTTGTTCTGG+TGG | - | chr3.4:84848195-84848214 | MS.gene013494:CDS | 40.0% | |
| TTACGGAGTTGTTATCGGAT+CGG | + | chr3.4:84847396-84847415 | None:intergenic | 40.0% | |
| TTCTTCGATGAAGCTACCAA+CGG | + | chr3.4:84847491-84847510 | None:intergenic | 40.0% | |
| ! | ACTATCTGGGACATTGAAAG+AGG | - | chr3.4:84847838-84847857 | MS.gene013494:CDS | 40.0% |
| ! | GGAATCAAGGGTTTTTGCTT+CGG | - | chr3.4:84847918-84847937 | MS.gene013494:CDS | 40.0% |
| ! | TAAAGGAGCACAAAACTCAC+TGG | + | chr3.4:84847752-84847771 | None:intergenic | 40.0% |
| ! | TGATGCACAGGCTCTTATTT+GGG | - | chr3.4:84848221-84848240 | MS.gene013494:CDS | 40.0% |
| ! | TTTCTGGAGAGAAGAATGTG+TGG | + | chr3.4:84847629-84847648 | None:intergenic | 40.0% |
| AATCTATGAGAGTCCACAGC+CGG | - | chr3.4:84847999-84848018 | MS.gene013494:CDS | 45.0% | |
| AGTTGTTATCGGATCGGAGA+TGG | + | chr3.4:84847390-84847409 | None:intergenic | 45.0% | |
| ATATTGCTTGGGGGGAATCA+AGG | - | chr3.4:84847905-84847924 | MS.gene013494:CDS | 45.0% | |
| GGATGGAACATGAGTTTGGT+GGG | + | chr3.4:84847604-84847623 | None:intergenic | 45.0% | |
| GTGTGTCAGGGTTGAAATTG+AGG | + | chr3.4:84847534-84847553 | None:intergenic | 45.0% | |
| GTTGTTATCGGATCGGAGAT+GGG | + | chr3.4:84847389-84847408 | None:intergenic | 45.0% | |
| TATTGCTTGGGGGGAATCAA+GGG | - | chr3.4:84847906-84847925 | MS.gene013494:CDS | 45.0% | |
| TCCAAGCCAAACGAAGCAAA+GGG | + | chr3.4:84848029-84848048 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACGAAGCAA+AGG | + | chr3.4:84848030-84848049 | None:intergenic | 45.0% | |
| TTGCTTCGGTTTCTGCTGAT+GGG | - | chr3.4:84847932-84847951 | MS.gene013494:CDS | 45.0% | |
| TTGTTGTGGGGAATTGGTGT+TGG | + | chr3.4:84847461-84847480 | None:intergenic | 45.0% | |
| TTTGCTTCGGTTTCTGCTGA+TGG | - | chr3.4:84847931-84847950 | MS.gene013494:CDS | 45.0% | |
| ! | GTTTGAGTGAGAGTGTGTCA+GGG | + | chr3.4:84847546-84847565 | None:intergenic | 45.0% |
| ! | TGGTGTCAATGCGATTGCTT+GGG | - | chr3.4:84848161-84848180 | MS.gene013494:CDS | 45.0% |
| ! | TGTTGTGGGGAATTGGTGTT+GGG | + | chr3.4:84847460-84847479 | None:intergenic | 45.0% |
| ! | TTTCTGCTGATGGGTCTGTT+AGG | - | chr3.4:84847941-84847960 | MS.gene013494:CDS | 45.0% |
| !! | AAACGAAGCAAAGGGGTATC+CGG | + | chr3.4:84848021-84848040 | None:intergenic | 45.0% |
| !! | TCGTTTGGCTTGGAACAAGA+AGG | - | chr3.4:84848035-84848054 | MS.gene013494:CDS | 45.0% |
| ACATGGCGTAGAGTGGGTAT+GGG | + | chr3.4:84847429-84847448 | None:intergenic | 50.0% | |
| AGATGGACATGGCGTAGAGT+GGG | + | chr3.4:84847435-84847454 | None:intergenic | 50.0% | |
| CCAAGCCAAACGAAGCAAAG+GGG | + | chr3.4:84848028-84848047 | None:intergenic | 50.0% | |
| CTGGAGAGAAGAATGTGTGG+CGG | + | chr3.4:84847626-84847645 | None:intergenic | 50.0% | |
| GAATTGGAGAGACATCGTGC+TGG | - | chr3.4:84848141-84848160 | MS.gene013494:CDS | 50.0% | |
| GATGCGTTGTTGTGGGGAAT+TGG | + | chr3.4:84847467-84847486 | None:intergenic | 50.0% | |
| GGATACCCCTTTGCTTCGTT+TGG | - | chr3.4:84848020-84848039 | MS.gene013494:CDS | 50.0% | |
| GGATGATCGAAGGAGAGTGA+AGG | + | chr3.4:84847574-84847593 | None:intergenic | 50.0% | |
| GGGATGGAACATGAGTTTGG+TGG | + | chr3.4:84847605-84847624 | None:intergenic | 50.0% | |
| TAGATCACCAACTACACCGG+TGG | - | chr3.4:84848116-84848135 | MS.gene013494:CDS | 50.0% | |
| TCGAAGGAGAGTGAAGGTTG+AGG | + | chr3.4:84847568-84847587 | None:intergenic | 50.0% | |
| TCGGAGATGGGATTCTTGTG+TGG | + | chr3.4:84847377-84847396 | None:intergenic | 50.0% | |
| TGGAGAGAAGAATGTGTGGC+GGG | + | chr3.4:84847625-84847644 | None:intergenic | 50.0% | |
| TTTCGCGAACTTCCCAGAGA+CGG | + | chr3.4:84847690-84847709 | None:intergenic | 50.0% | |
| ! | ATGAGTTTGGTGGGTGGGTA+AGG | + | chr3.4:84847595-84847614 | None:intergenic | 50.0% |
| ! | CTGGTGTCAATGCGATTGCT+TGG | - | chr3.4:84848160-84848179 | MS.gene013494:CDS | 50.0% |
| ! | GGAACATGAGTTTGGTGGGT+GGG | + | chr3.4:84847600-84847619 | None:intergenic | 50.0% |
| ! | GGCTCTTATTTGGGAGTTGC+CGG | - | chr3.4:84848230-84848249 | MS.gene013494:CDS | 50.0% |
| ! | GGTTTGAGTGAGAGTGTGTC+AGG | + | chr3.4:84847547-84847566 | None:intergenic | 50.0% |
| ! | TGGAACATGAGTTTGGTGGG+TGG | + | chr3.4:84847601-84847620 | None:intergenic | 50.0% |
| !! | GGAATTGGTGTTGGGAGAGA+TGG | + | chr3.4:84847452-84847471 | None:intergenic | 50.0% |
| AACGGCGATGCGTTGTTGTG+GGG | + | chr3.4:84847473-84847492 | None:intergenic | 55.0% | |
| AATTCCGCCACCGGTGTAGT+TGG | + | chr3.4:84848126-84848145 | None:intergenic | 55.0% | |
| ATCACCAACTACACCGGTGG+CGG | - | chr3.4:84848119-84848138 | MS.gene013494:CDS | 55.0% | |
| CAACGGCGATGCGTTGTTGT+GGG | + | chr3.4:84847474-84847493 | None:intergenic | 55.0% | |
| CATGGCGTAGAGTGGGTATG+GGG | + | chr3.4:84847428-84847447 | None:intergenic | 55.0% | |
| CCAGAGACGGAGATAGTCAC+CGG | + | chr3.4:84847677-84847696 | None:intergenic | 55.0% | |
| CCCCTTTGCTTCGTTTGGCT+TGG | - | chr3.4:84848025-84848044 | MS.gene013494:CDS | 55.0% | |
| CGGTGACTATCTCCGTCTCT+GGG | - | chr3.4:84847675-84847694 | MS.gene013494:CDS | 55.0% | |
| GACATGGCGTAGAGTGGGTA+TGG | + | chr3.4:84847430-84847449 | None:intergenic | 55.0% | |
| GAGATGGACATGGCGTAGAG+TGG | + | chr3.4:84847436-84847455 | None:intergenic | 55.0% | |
| GGCGGGATGGAACATGAGTT+TGG | + | chr3.4:84847608-84847627 | None:intergenic | 55.0% | |
| GGGTGGGTAAGGATGATCGA+AGG | + | chr3.4:84847584-84847603 | None:intergenic | 55.0% | |
| TGTCTCTCCAATTCCGCCAC+CGG | + | chr3.4:84848135-84848154 | None:intergenic | 55.0% | |
| TTCTGGTGGGGATGATGCAC+AGG | - | chr3.4:84848209-84848228 | MS.gene013494:CDS | 55.0% | |
| ! | GAGAAGAATGTGTGGCGGGA+TGG | + | chr3.4:84847621-84847640 | None:intergenic | 55.0% |
| ! | GGTGTTGGGAGAGATGGACA+TGG | + | chr3.4:84847446-84847465 | None:intergenic | 55.0% |
| ! | TATTTGGGAGTTGCCGGCTG+TGG | - | chr3.4:84848236-84848255 | MS.gene013494:CDS | 55.0% |
| !! | AACTACACCGGTGGCGGAAT+TGG | - | chr3.4:84848125-84848144 | MS.gene013494:CDS | 55.0% |
| CCAACGGCGATGCGTTGTTG+TGG | + | chr3.4:84847475-84847494 | None:intergenic | 60.0% | |
| CCACAACAACGCATCGCCGT+TGG | - | chr3.4:84847472-84847491 | MS.gene013494:CDS | 60.0% | |
| CCGGTGACTATCTCCGTCTC+TGG | - | chr3.4:84847674-84847693 | MS.gene013494:CDS | 60.0% | |
| GAGACGGAGATAGTCACCGG+AGG | + | chr3.4:84847674-84847693 | None:intergenic | 60.0% | |
| GATAGTCACCGGAGGTAGCG+AGG | + | chr3.4:84847666-84847685 | None:intergenic | 60.0% | |
| GGTCTGCTGCTCAGCCTGAT+TGG | - | chr3.4:84848325-84848344 | MS.gene013494:CDS | 60.0% | |
| ! | GGAGGTCGGAGGAGGTTTTC+TGG | + | chr3.4:84847645-84847664 | None:intergenic | 60.0% |
| !! | AGCAAAGGGGTATCCGGCTG+TGG | + | chr3.4:84848015-84848034 | None:intergenic | 60.0% |
| ACCGGAGGTAGCGAGGAGGT+CGG | + | chr3.4:84847659-84847678 | None:intergenic | 65.0% | |
| AGTCACCGGAGGTAGCGAGG+AGG | + | chr3.4:84847663-84847682 | None:intergenic | 65.0% | |
| CCATTCGGACCAGCCACAGC+CGG | + | chr3.4:84848252-84848271 | None:intergenic | 65.0% | |
| TCCGACCTCCTCGCTACCTC+CGG | - | chr3.4:84847655-84847674 | MS.gene013494:CDS | 65.0% | |
| ! | CGGCTGTGGCTGGTCCGAAT+GGG | - | chr3.4:84848250-84848269 | MS.gene013494:CDS | 65.0% |
| GGAGGTAGCGAGGAGGTCGG+AGG | + | chr3.4:84847656-84847675 | None:intergenic | 70.0% | |
| GGTAGCGAGGAGGTCGGAGG+AGG | + | chr3.4:84847653-84847672 | None:intergenic | 70.0% | |
| ! | CCGGCTGTGGCTGGTCCGAA+TGG | - | chr3.4:84848249-84848268 | MS.gene013494:CDS | 70.0% |
| ! | TGGGAGTTGCCGGCTGTGGC+TGG | - | chr3.4:84848240-84848259 | MS.gene013494:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84847364 | 84848392 | 84847364 | ID=MS.gene013494 |
| chr3.4 | mRNA | 84847364 | 84848392 | 84847364 | ID=MS.gene013494.t1;Parent=MS.gene013494 |
| chr3.4 | exon | 84847364 | 84848392 | 84847364 | ID=MS.gene013494.t1.exon1;Parent=MS.gene013494.t1 |
| chr3.4 | CDS | 84847364 | 84848392 | 84847364 | ID=cds.MS.gene013494.t1;Parent=MS.gene013494.t1 |
| Gene Sequence |
| Protein sequence |
