Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52286.t1 | XP_003624554.2 | 99.1 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 1.80E-202 | 714.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52286.t1 | Q9LPV9 | 90.9 | 352 | 26 | 1 | 1 | 352 | 1 | 346 | 6.3e-188 | 657.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52286.t1 | G7KYC1 | 99.1 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 1.3e-202 | 714.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52286 | MS.gene06812 | PPI |
| MS.gene52286 | MS.gene06600 | PPI |
| MS.gene52286 | MS.gene057254 | PPI |
| MS.gene52286 | MS.gene013494 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52286.t1 | MTR_7g084810 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 720 |
| MS.gene52286.t1 | MTR_3g092840 | 61.493 | 335 | 114 | 5 | 23 | 352 | 18 | 342 | 8.33e-150 | 426 |
| MS.gene52286.t1 | MTR_3g092830 | 55.319 | 94 | 40 | 1 | 259 | 352 | 1 | 92 | 4.90e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52286.t1 | AT1G12910 | 91.477 | 352 | 24 | 2 | 1 | 352 | 1 | 346 | 0.0 | 664 |
| MS.gene52286.t1 | AT3G26640 | 86.080 | 352 | 43 | 2 | 1 | 352 | 1 | 346 | 0.0 | 624 |
| MS.gene52286.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene52286.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene52286.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene52286.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene52286.t1 | AT1G18830 | 24.859 | 177 | 114 | 4 | 138 | 302 | 112 | 281 | 2.56e-11 | 65.5 |
| MS.gene52286.t1 | AT1G18830 | 24.859 | 177 | 114 | 4 | 138 | 302 | 112 | 281 | 2.56e-11 | 65.5 |
| MS.gene52286.t1 | AT1G18830 | 24.859 | 177 | 114 | 4 | 138 | 302 | 112 | 281 | 2.59e-11 | 65.5 |
| MS.gene52286.t1 | AT4G35050 | 24.444 | 225 | 142 | 10 | 149 | 352 | 177 | 394 | 5.82e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTAAGCTTCAGATTCTT+AGG | 0.130906 | 7.3:+23817063 | MS.gene52286:CDS |
| TTCCAATCAAAAGAAGTAAT+TGG | 0.178566 | 7.3:-23816459 | None:intergenic |
| CCTCCGATTTCCTCCGTATT+TGG | 0.189798 | 7.3:+23816343 | MS.gene52286:CDS |
| AGGTGGGCTTGATCCTATTT+TGG | 0.218068 | 7.3:+23816965 | MS.gene52286:CDS |
| TTCAGAACTTTCGTAAATTA+TGG | 0.245041 | 7.3:-23816688 | None:intergenic |
| TGAACGATTTCGACGCGGTT+AGG | 0.301990 | 7.3:-23816195 | None:intergenic |
| GATTTGGGATCTTTCTTCAA+TGG | 0.308847 | 7.3:+23816929 | MS.gene52286:CDS |
| TTTCTGCTGATGGGTCTGTT+AGG | 0.312772 | 7.3:+23816634 | MS.gene52286:CDS |
| GGGCGTTGGCAGTCTTTGTC+AGG | 0.322893 | 7.3:-23816303 | None:intergenic |
| ATGATTCTCAGGCGTTGATT+TGG | 0.327910 | 7.3:+23816913 | MS.gene52286:CDS |
| GAGGAGGTGGCGAGGAGGTC+GGG | 0.337769 | 7.3:-23816324 | None:intergenic |
| GTCTTCTTCTCAGCCTGATT+GGG | 0.338432 | 7.3:+23817025 | MS.gene52286:CDS |
| GGTCTTCTTCTCAGCCTGAT+TGG | 0.338481 | 7.3:+23817024 | MS.gene52286:CDS |
| TGATTCTCAGGCGTTGATTT+GGG | 0.344030 | 7.3:+23816914 | MS.gene52286:CDS |
| TAAACAAGATCCTAGGTATA+TGG | 0.347324 | 7.3:+23816743 | MS.gene52286:CDS |
| ATTTGGGATCTTTCTTCAAT+GGG | 0.351970 | 7.3:+23816930 | MS.gene52286:CDS |
| AGCCTAACCAACGGTGTATC+AGG | 0.360847 | 7.3:-23816711 | None:intergenic |
| CCAGCAGTATAAGCCAAAAT+AGG | 0.361162 | 7.3:-23816978 | None:intergenic |
| GTATATGGCAACGATTATAA+TGG | 0.363636 | 7.3:+23816758 | MS.gene52286:CDS |
| GGATGTTCGAAGGAGAGATT+TGG | 0.364624 | 7.3:-23816252 | None:intergenic |
| ATGGATTTGGTGGGTGGGTA+AGG | 0.374091 | 7.3:-23816273 | None:intergenic |
| GTTGCTCGTCGGAAGTGTCT+TGG | 0.374416 | 7.3:-23816056 | None:intergenic |
| CGACACAACGTGTACCATTT+GGG | 0.395220 | 7.3:+23816518 | MS.gene52286:CDS |
| TCGACACAACGTGTACCATT+TGG | 0.395312 | 7.3:+23816517 | MS.gene52286:CDS |
| GTCAGGGATGAAGATGGATT+TGG | 0.401641 | 7.3:-23816286 | None:intergenic |
| AGGAGGTGGCGAGGAGGTCG+GGG | 0.406903 | 7.3:-23816323 | None:intergenic |
| AAGAGGTTTATGATATAGCT+TGG | 0.407143 | 7.3:+23816586 | MS.gene52286:CDS |
| AGAGGTTTATGATATAGCTT+GGG | 0.414776 | 7.3:+23816587 | MS.gene52286:CDS |
| TTCTGCTGATGGGTCTGTTA+GGG | 0.416523 | 7.3:+23816635 | MS.gene52286:CDS |
| TCAATGGGGCAGCCTGTTGA+AGG | 0.416805 | 7.3:+23816945 | MS.gene52286:CDS |
| TTTGCGTCGGTTTCTGCTGA+TGG | 0.417377 | 7.3:+23816624 | MS.gene52286:CDS |
| CCGCCAAATACGGAGGAAAT+CGG | 0.418339 | 7.3:-23816346 | None:intergenic |
| GAACGATTTCGACGCGGTTA+GGG | 0.418818 | 7.3:-23816194 | None:intergenic |
| CACTGCTGGTGATGATTCTC+AGG | 0.422046 | 7.3:+23816902 | MS.gene52286:CDS |
| TCCAATCAAAAGAAGTAATT+GGG | 0.422669 | 7.3:-23816458 | None:intergenic |
| TTCTTTCTCAATATCCCAAA+TGG | 0.431809 | 7.3:-23816532 | None:intergenic |
| CGTCGGAAGTGTCTTGGGTT+GGG | 0.435334 | 7.3:-23816050 | None:intergenic |
| CTGAGATTGAACAGCTTCAA+TGG | 0.437364 | 7.3:+23817003 | MS.gene52286:CDS |
| TGGCGAGGAGGTCGGGGCGT+TGG | 0.442078 | 7.3:-23816317 | None:intergenic |
| GACTAAGCTTCAGATTCTTA+GGG | 0.451874 | 7.3:+23817064 | MS.gene52286:CDS |
| AAAGCAATAGCAACCCAATC+AGG | 0.452793 | 7.3:-23817038 | None:intergenic |
| CGCAATTAACTGCGTATCAA+CGG | 0.454016 | 7.3:-23816556 | None:intergenic |
| ATGGGGCAGCCTGTTGAAGG+TGG | 0.459832 | 7.3:+23816948 | MS.gene52286:CDS |
| CGACGCTGATTCGTCGGAAT+CGG | 0.459940 | 7.3:-23816373 | None:intergenic |
| TTGCTCGTCGGAAGTGTCTT+GGG | 0.460024 | 7.3:-23816055 | None:intergenic |
| GATATAGCTTGGGGTGGTGT+TGG | 0.461083 | 7.3:+23816597 | MS.gene52286:CDS |
| TTGCGTCGGTTTCTGCTGAT+GGG | 0.464907 | 7.3:+23816625 | MS.gene52286:CDS |
| TCGTCGGAAGTGTCTTGGGT+TGG | 0.465598 | 7.3:-23816051 | None:intergenic |
| GGATCAAGCCCACCTTCAAC+AGG | 0.465837 | 7.3:-23816957 | None:intergenic |
| GAAGCTGAACCACGTCGAAT+CGG | 0.471288 | 7.3:+23816483 | MS.gene52286:CDS |
| GGCACATCTACGCTATGAAC+TGG | 0.475900 | 7.3:+23816115 | MS.gene52286:CDS |
| GTTAATTGCGCATGATAAAG+AGG | 0.479182 | 7.3:+23816569 | MS.gene52286:CDS |
| CCGATTTCCTCCGTATTTGG+CGG | 0.480379 | 7.3:+23816346 | MS.gene52286:CDS |
| GATGTTCGAAGGAGAGATTT+GGG | 0.482799 | 7.3:-23816251 | None:intergenic |
| AATCGGAGATCCGCCAAATA+CGG | 0.485839 | 7.3:-23816356 | None:intergenic |
| GTCTTTGTCAGGGATGAAGA+TGG | 0.492695 | 7.3:-23816292 | None:intergenic |
| CACCGTTGGTTAGGCTAGGT+TGG | 0.498966 | 7.3:+23816718 | MS.gene52286:CDS |
| ACTATGCGGCGCCCACGCTA+TGG | 0.499007 | 7.3:-23816865 | None:intergenic |
| AGGGATGAAGATGGATTTGG+TGG | 0.499516 | 7.3:-23816283 | None:intergenic |
| TCGTGTCATATTTGCACTGC+TGG | 0.500103 | 7.3:+23816888 | MS.gene52286:CDS |
| GGAGGAGGTGGCGAGGAGGT+CGG | 0.504036 | 7.3:-23816325 | None:intergenic |
| GTTGGAATAAACAAGATCCT+AGG | 0.507846 | 7.3:+23816736 | MS.gene52286:CDS |
| ACGGAGGAAATCGGAGGAGG+TGG | 0.513893 | 7.3:-23816337 | None:intergenic |
| GGCGTTGGCAGTCTTTGTCA+GGG | 0.522445 | 7.3:-23816302 | None:intergenic |
| GATTATAATGGATTCTGCTA+AGG | 0.524815 | 7.3:+23816770 | MS.gene52286:CDS |
| ATGAAGATGGATTTGGTGGG+TGG | 0.531828 | 7.3:-23816279 | None:intergenic |
| TGGGGCAGCCTGTTGAAGGT+GGG | 0.536184 | 7.3:+23816949 | MS.gene52286:CDS |
| GAACTCAAAAGTCTTCTCAA+TGG | 0.538802 | 7.3:+23816411 | MS.gene52286:CDS |
| TTCGAAGGAGAGATTTGGGT+CGG | 0.542384 | 7.3:-23816247 | None:intergenic |
| AACCTGATACACCGTTGGTT+AGG | 0.543600 | 7.3:+23816709 | MS.gene52286:CDS |
| GGAAATCGGAGGAGGTGGCG+AGG | 0.553341 | 7.3:-23816332 | None:intergenic |
| CTAAGAGAGAAGCGATAGCG+AGG | 0.568922 | 7.3:-23816164 | None:intergenic |
| AACTCCACCACCGGTAGCGT+TGG | 0.572521 | 7.3:-23816816 | None:intergenic |
| GTCGGATTTGATTTCGCCGG+TGG | 0.588124 | 7.3:-23816229 | None:intergenic |
| TGTCTCTGCAACTCCACCAC+CGG | 0.590157 | 7.3:-23816825 | None:intergenic |
| TGAAGATGGATTTGGTGGGT+GGG | 0.592001 | 7.3:-23816278 | None:intergenic |
| TTCTGAACCTGATACACCGT+TGG | 0.592173 | 7.3:+23816704 | MS.gene52286:CDS |
| AATACGGAGGAAATCGGAGG+AGG | 0.595705 | 7.3:-23816340 | None:intergenic |
| TGGGTCGGATTTGATTTCGC+CGG | 0.599155 | 7.3:-23816232 | None:intergenic |
| AGACTCCGACGCTGATTCGT+CGG | 0.602656 | 7.3:-23816379 | None:intergenic |
| CGGAGATCCGCCAAATACGG+AGG | 0.602926 | 7.3:-23816353 | None:intergenic |
| TTCATAGCGTAGATGTGCCA+TGG | 0.606486 | 7.3:-23816111 | None:intergenic |
| TAGTGTGAATGCCATAGCGT+GGG | 0.611881 | 7.3:+23816854 | MS.gene52286:CDS |
| GATACACCGTTGGTTAGGCT+AGG | 0.616430 | 7.3:+23816714 | MS.gene52286:CDS |
| ATAATCGTTGCCATATACCT+AGG | 0.620729 | 7.3:-23816753 | None:intergenic |
| GAATCAGCGTCGGAGTCTCG+TGG | 0.628287 | 7.3:+23816384 | MS.gene52286:CDS |
| AATCGGAGGAGGTGGCGAGG+AGG | 0.630478 | 7.3:-23816329 | None:intergenic |
| GTTTATGATATAGCTTGGGG+TGG | 0.631893 | 7.3:+23816591 | MS.gene52286:CDS |
| TTCCAACCTAGCCTAACCAA+CGG | 0.643891 | 7.3:-23816720 | None:intergenic |
| GGGATGAAGATGGATTTGGT+GGG | 0.648292 | 7.3:-23816282 | None:intergenic |
| CGATTCCGACGAATCAGCGT+CGG | 0.649196 | 7.3:+23816374 | MS.gene52286:CDS |
| TTTGGGATCTTTCTTCAATG+GGG | 0.652017 | 7.3:+23816931 | MS.gene52286:CDS |
| GTTCAGCTTGATGACACCAC+CGG | 0.655354 | 7.3:+23816213 | MS.gene52286:CDS |
| GGGTGGGTAAGGATGTTCGA+AGG | 0.657390 | 7.3:-23816262 | None:intergenic |
| CTAGTGTGAATGCCATAGCG+TGG | 0.659753 | 7.3:+23816853 | MS.gene52286:CDS |
| CAAATATGACACGAACTATG+CGG | 0.670679 | 7.3:-23816879 | None:intergenic |
| GAGGTTTATGATATAGCTTG+GGG | 0.671285 | 7.3:+23816588 | MS.gene52286:CDS |
| CTCGAAGTACCGATTCGACG+TGG | 0.693978 | 7.3:-23816492 | None:intergenic |
| TCTACACTTACGAAGCACCA+TGG | 0.695382 | 7.3:+23816094 | MS.gene52286:CDS |
| CCAAATACGGAGGAAATCGG+AGG | 0.698544 | 7.3:-23816343 | None:intergenic |
| CAAGCTGAACGATTTCGACG+CGG | 0.729457 | 7.3:-23816200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAAAAACAGTGAATACTG+TGG | + | chr7.3:23816435-23816454 | MS.gene52286:CDS | 25.0% |
| ! | TCCAATCAAAAGAAGTAATT+GGG | - | chr7.3:23816461-23816480 | None:intergenic | 25.0% |
| ! | TTCAGAACTTTCGTAAATTA+TGG | - | chr7.3:23816691-23816710 | None:intergenic | 25.0% |
| ! | TTCCAATCAAAAGAAGTAAT+TGG | - | chr7.3:23816462-23816481 | None:intergenic | 25.0% |
| AAGAGGTTTATGATATAGCT+TGG | + | chr7.3:23816586-23816605 | MS.gene52286:CDS | 30.0% | |
| AGAGGTTTATGATATAGCTT+GGG | + | chr7.3:23816587-23816606 | MS.gene52286:CDS | 30.0% | |
| GTATATGGCAACGATTATAA+TGG | + | chr7.3:23816758-23816777 | MS.gene52286:CDS | 30.0% | |
| TAAACAAGATCCTAGGTATA+TGG | + | chr7.3:23816743-23816762 | MS.gene52286:CDS | 30.0% | |
| TTCTTTCTCAATATCCCAAA+TGG | - | chr7.3:23816535-23816554 | None:intergenic | 30.0% | |
| ! | ATTTGGGATCTTTCTTCAAT+GGG | + | chr7.3:23816930-23816949 | MS.gene52286:CDS | 30.0% |
| !! | GATTATAATGGATTCTGCTA+AGG | + | chr7.3:23816770-23816789 | MS.gene52286:CDS | 30.0% |
| ATAATCGTTGCCATATACCT+AGG | - | chr7.3:23816756-23816775 | None:intergenic | 35.0% | |
| CAAATATGACACGAACTATG+CGG | - | chr7.3:23816882-23816901 | None:intergenic | 35.0% | |
| GAACTCAAAAGTCTTCTCAA+TGG | + | chr7.3:23816411-23816430 | MS.gene52286:CDS | 35.0% | |
| GACTAAGCTTCAGATTCTTA+GGG | + | chr7.3:23817064-23817083 | MS.gene52286:CDS | 35.0% | |
| GAGGTTTATGATATAGCTTG+GGG | + | chr7.3:23816588-23816607 | MS.gene52286:CDS | 35.0% | |
| GTTAATTGCGCATGATAAAG+AGG | + | chr7.3:23816569-23816588 | MS.gene52286:CDS | 35.0% | |
| GTTGGAATAAACAAGATCCT+AGG | + | chr7.3:23816736-23816755 | MS.gene52286:CDS | 35.0% | |
| ! | GATTTGGGATCTTTCTTCAA+TGG | + | chr7.3:23816929-23816948 | MS.gene52286:CDS | 35.0% |
| ! | GCCCAATTACTTCTTTTGAT+TGG | + | chr7.3:23816457-23816476 | MS.gene52286:CDS | 35.0% |
| ! | TTTGGGATCTTTCTTCAATG+GGG | + | chr7.3:23816931-23816950 | MS.gene52286:CDS | 35.0% |
| AAAGCAATAGCAACCCAATC+AGG | - | chr7.3:23817041-23817060 | None:intergenic | 40.0% | |
| CCAGCAGTATAAGCCAAAAT+AGG | - | chr7.3:23816981-23817000 | None:intergenic | 40.0% | |
| CGACTAAGCTTCAGATTCTT+AGG | + | chr7.3:23817063-23817082 | MS.gene52286:CDS | 40.0% | |
| CGCAATTAACTGCGTATCAA+CGG | - | chr7.3:23816559-23816578 | None:intergenic | 40.0% | |
| CTGAGATTGAACAGCTTCAA+TGG | + | chr7.3:23817003-23817022 | MS.gene52286:CDS | 40.0% | |
| GATGTTCGAAGGAGAGATTT+GGG | - | chr7.3:23816254-23816273 | None:intergenic | 40.0% | |
| GTTTATGATATAGCTTGGGG+TGG | + | chr7.3:23816591-23816610 | MS.gene52286:CDS | 40.0% | |
| ! | TATTCGTTTTCCAACGCTAC+CGG | + | chr7.3:23816806-23816825 | MS.gene52286:CDS | 40.0% |
| !! | ATGATTCTCAGGCGTTGATT+TGG | + | chr7.3:23816913-23816932 | MS.gene52286:CDS | 40.0% |
| !! | TGATTCTCAGGCGTTGATTT+GGG | + | chr7.3:23816914-23816933 | MS.gene52286:CDS | 40.0% |
| !!! | CCTATTTTGGCTTATACTGC+TGG | + | chr7.3:23816978-23816997 | MS.gene52286:CDS | 40.0% |
| AATCGGAGATCCGCCAAATA+CGG | - | chr7.3:23816359-23816378 | None:intergenic | 45.0% | |
| CGACACAACGTGTACCATTT+GGG | + | chr7.3:23816518-23816537 | MS.gene52286:CDS | 45.0% | |
| CGACGAGCAACAAAAACGTT+CGG | + | chr7.3:23816068-23816087 | MS.gene52286:CDS | 45.0% | |
| GGATGTTCGAAGGAGAGATT+TGG | - | chr7.3:23816255-23816274 | None:intergenic | 45.0% | |
| GTCTTCTTCTCAGCCTGATT+GGG | + | chr7.3:23817025-23817044 | MS.gene52286:CDS | 45.0% | |
| GTCTTTGTCAGGGATGAAGA+TGG | - | chr7.3:23816295-23816314 | None:intergenic | 45.0% | |
| TAGTGTGAATGCCATAGCGT+GGG | + | chr7.3:23816854-23816873 | MS.gene52286:CDS | 45.0% | |
| TCGACACAACGTGTACCATT+TGG | + | chr7.3:23816517-23816536 | MS.gene52286:CDS | 45.0% | |
| TCGTGTCATATTTGCACTGC+TGG | + | chr7.3:23816888-23816907 | MS.gene52286:CDS | 45.0% | |
| TTCATAGCGTAGATGTGCCA+TGG | - | chr7.3:23816114-23816133 | None:intergenic | 45.0% | |
| TTCCAACCTAGCCTAACCAA+CGG | - | chr7.3:23816723-23816742 | None:intergenic | 45.0% | |
| TTCGAAGGAGAGATTTGGGT+CGG | - | chr7.3:23816250-23816269 | None:intergenic | 45.0% | |
| TTCTGAACCTGATACACCGT+TGG | + | chr7.3:23816704-23816723 | MS.gene52286:CDS | 45.0% | |
| ! | AACCTGATACACCGTTGGTT+AGG | + | chr7.3:23816709-23816728 | MS.gene52286:CDS | 45.0% |
| ! | AGGGATGAAGATGGATTTGG+TGG | - | chr7.3:23816286-23816305 | None:intergenic | 45.0% |
| ! | CGAACGTTTTTGTTGCTCGT+CGG | - | chr7.3:23816070-23816089 | None:intergenic | 45.0% |
| ! | GGGATGAAGATGGATTTGGT+GGG | - | chr7.3:23816285-23816304 | None:intergenic | 45.0% |
| ! | GTCAGGGATGAAGATGGATT+TGG | - | chr7.3:23816289-23816308 | None:intergenic | 45.0% |
| ! | TCTACACTTACGAAGCACCA+TGG | + | chr7.3:23816094-23816113 | MS.gene52286:CDS | 45.0% |
| ! | TTCTGCTGATGGGTCTGTTA+GGG | + | chr7.3:23816635-23816654 | MS.gene52286:CDS | 45.0% |
| ! | TTTCTGCTGATGGGTCTGTT+AGG | + | chr7.3:23816634-23816653 | MS.gene52286:CDS | 45.0% |
| !! | AGGTGGGCTTGATCCTATTT+TGG | + | chr7.3:23816965-23816984 | MS.gene52286:CDS | 45.0% |
| !! | ATGAAGATGGATTTGGTGGG+TGG | - | chr7.3:23816282-23816301 | None:intergenic | 45.0% |
| !! | TGAAGATGGATTTGGTGGGT+GGG | - | chr7.3:23816281-23816300 | None:intergenic | 45.0% |
| !!! | GGCGATATTTTTTGTCGCGA+CGG | - | chr7.3:23816146-23816165 | None:intergenic | 45.0% |
| !!! | TGGTGTTGGTGTTTTTGCGT+CGG | + | chr7.3:23816611-23816630 | MS.gene52286:CDS | 45.0% |
| AATACGGAGGAAATCGGAGG+AGG | - | chr7.3:23816343-23816362 | None:intergenic | 50.0% | |
| AGCCTAACCAACGGTGTATC+AGG | - | chr7.3:23816714-23816733 | None:intergenic | 50.0% | |
| CAAGCTGAACGATTTCGACG+CGG | - | chr7.3:23816203-23816222 | None:intergenic | 50.0% | |
| CCAAATACGGAGGAAATCGG+AGG | - | chr7.3:23816346-23816365 | None:intergenic | 50.0% | |
| CCGATTTCCTCCGTATTTGG+CGG | + | chr7.3:23816346-23816365 | MS.gene52286:CDS | 50.0% | |
| CCGCCAAATACGGAGGAAAT+CGG | - | chr7.3:23816349-23816368 | None:intergenic | 50.0% | |
| CCTCCGATTTCCTCCGTATT+TGG | + | chr7.3:23816343-23816362 | MS.gene52286:CDS | 50.0% | |
| CTAAGAGAGAAGCGATAGCG+AGG | - | chr7.3:23816167-23816186 | None:intergenic | 50.0% | |
| CTAGTGTGAATGCCATAGCG+TGG | + | chr7.3:23816853-23816872 | MS.gene52286:CDS | 50.0% | |
| GAACGATTTCGACGCGGTTA+GGG | - | chr7.3:23816197-23816216 | None:intergenic | 50.0% | |
| GAAGCTGAACCACGTCGAAT+CGG | + | chr7.3:23816483-23816502 | MS.gene52286:CDS | 50.0% | |
| GATATAGCTTGGGGTGGTGT+TGG | + | chr7.3:23816597-23816616 | MS.gene52286:CDS | 50.0% | |
| GGCACATCTACGCTATGAAC+TGG | + | chr7.3:23816115-23816134 | MS.gene52286:CDS | 50.0% | |
| GGTCTTCTTCTCAGCCTGAT+TGG | + | chr7.3:23817024-23817043 | MS.gene52286:CDS | 50.0% | |
| TGAACGATTTCGACGCGGTT+AGG | - | chr7.3:23816198-23816217 | None:intergenic | 50.0% | |
| ! | CACTGCTGGTGATGATTCTC+AGG | + | chr7.3:23816902-23816921 | MS.gene52286:CDS | 50.0% |
| ! | GATACACCGTTGGTTAGGCT+AGG | + | chr7.3:23816714-23816733 | MS.gene52286:CDS | 50.0% |
| ! | GTTCAGCTTGATGACACCAC+CGG | + | chr7.3:23816213-23816232 | MS.gene52286:CDS | 50.0% |
| ! | TGGGTCGGATTTGATTTCGC+CGG | - | chr7.3:23816235-23816254 | None:intergenic | 50.0% |
| !! | ATGGATTTGGTGGGTGGGTA+AGG | - | chr7.3:23816276-23816295 | None:intergenic | 50.0% |
| !! | TTGCGTCGGTTTCTGCTGAT+GGG | + | chr7.3:23816625-23816644 | MS.gene52286:CDS | 50.0% |
| !! | TTGCTCGTCGGAAGTGTCTT+GGG | - | chr7.3:23816058-23816077 | None:intergenic | 50.0% |
| !! | TTTGCGTCGGTTTCTGCTGA+TGG | + | chr7.3:23816624-23816643 | MS.gene52286:CDS | 50.0% |
| CGATTCCGACGAATCAGCGT+CGG | + | chr7.3:23816374-23816393 | MS.gene52286:CDS | 55.0% | |
| GGATCAAGCCCACCTTCAAC+AGG | - | chr7.3:23816960-23816979 | None:intergenic | 55.0% | |
| GGGTGGGTAAGGATGTTCGA+AGG | - | chr7.3:23816265-23816284 | None:intergenic | 55.0% | |
| TCAATGGGGCAGCCTGTTGA+AGG | + | chr7.3:23816945-23816964 | MS.gene52286:CDS | 55.0% | |
| TGTCTCTGCAACTCCACCAC+CGG | - | chr7.3:23816828-23816847 | None:intergenic | 55.0% | |
| ! | CACCGTTGGTTAGGCTAGGT+TGG | + | chr7.3:23816718-23816737 | MS.gene52286:CDS | 55.0% |
| ! | GTCGGATTTGATTTCGCCGG+TGG | - | chr7.3:23816232-23816251 | None:intergenic | 55.0% |
| ! | TCGTTTTCCAACGCTACCGG+TGG | + | chr7.3:23816809-23816828 | MS.gene52286:CDS | 55.0% |
| ! | TTTTCCAACGCTACCGGTGG+TGG | + | chr7.3:23816812-23816831 | MS.gene52286:CDS | 55.0% |
| !! | AGACTCCGACGCTGATTCGT+CGG | - | chr7.3:23816382-23816401 | None:intergenic | 55.0% |
| !! | CGACGCTGATTCGTCGGAAT+CGG | - | chr7.3:23816376-23816395 | None:intergenic | 55.0% |
| !! | CGTCGGAAGTGTCTTGGGTT+GGG | - | chr7.3:23816053-23816072 | None:intergenic | 55.0% |
| !! | CTCGAAGTACCGATTCGACG+TGG | - | chr7.3:23816495-23816514 | None:intergenic | 55.0% |
| !! | GGCGTTGGCAGTCTTTGTCA+GGG | - | chr7.3:23816305-23816324 | None:intergenic | 55.0% |
| !! | GTTGCTCGTCGGAAGTGTCT+TGG | - | chr7.3:23816059-23816078 | None:intergenic | 55.0% |
| !! | TCGTCGGAAGTGTCTTGGGT+TGG | - | chr7.3:23816054-23816073 | None:intergenic | 55.0% |
| AACTCCACCACCGGTAGCGT+TGG | - | chr7.3:23816819-23816838 | None:intergenic | 60.0% | |
| ACGGAGGAAATCGGAGGAGG+TGG | - | chr7.3:23816340-23816359 | None:intergenic | 60.0% | |
| ATGGGGCAGCCTGTTGAAGG+TGG | + | chr7.3:23816948-23816967 | MS.gene52286:CDS | 60.0% | |
| CGGAGATCCGCCAAATACGG+AGG | - | chr7.3:23816356-23816375 | None:intergenic | 60.0% | |
| TGGGGCAGCCTGTTGAAGGT+GGG | + | chr7.3:23816949-23816968 | MS.gene52286:CDS | 60.0% | |
| ! | GAATCAGCGTCGGAGTCTCG+TGG | + | chr7.3:23816384-23816403 | MS.gene52286:CDS | 60.0% |
| !! | GGGCGTTGGCAGTCTTTGTC+AGG | - | chr7.3:23816306-23816325 | None:intergenic | 60.0% |
| AATCGGAGGAGGTGGCGAGG+AGG | - | chr7.3:23816332-23816351 | None:intergenic | 65.0% | |
| ACTATGCGGCGCCCACGCTA+TGG | - | chr7.3:23816868-23816887 | None:intergenic | 65.0% | |
| GGAAATCGGAGGAGGTGGCG+AGG | - | chr7.3:23816335-23816354 | None:intergenic | 65.0% | |
| AGGAGGTGGCGAGGAGGTCG+GGG | - | chr7.3:23816326-23816345 | None:intergenic | 70.0% | |
| GAGGAGGTGGCGAGGAGGTC+GGG | - | chr7.3:23816327-23816346 | None:intergenic | 70.0% | |
| GGAGGAGGTGGCGAGGAGGT+CGG | - | chr7.3:23816328-23816347 | None:intergenic | 70.0% | |
| TGGCGAGGAGGTCGGGGCGT+TGG | - | chr7.3:23816320-23816339 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 23816033 | 23817091 | 23816033 | ID=MS.gene52286 |
| chr7.3 | mRNA | 23816033 | 23817091 | 23816033 | ID=MS.gene52286.t1;Parent=MS.gene52286 |
| chr7.3 | exon | 23816033 | 23817091 | 23816033 | ID=MS.gene52286.t1.exon1;Parent=MS.gene52286.t1 |
| chr7.3 | CDS | 23816033 | 23817091 | 23816033 | ID=cds.MS.gene52286.t1;Parent=MS.gene52286.t1 |
| Gene Sequence |
| Protein sequence |
