Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51926.t1 | XP_003624554.2 | 99.1 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 1.80E-202 | 714.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51926.t1 | Q9LPV9 | 90.9 | 352 | 26 | 1 | 1 | 352 | 1 | 346 | 6.3e-188 | 657.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51926.t1 | G7KYC1 | 99.1 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 1.3e-202 | 714.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51926 | MS.gene057254 | PPI |
| MS.gene51926 | MS.gene013494 | PPI |
| MS.gene51926 | MS.gene06812 | PPI |
| MS.gene51926 | MS.gene06600 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51926.t1 | MTR_7g084810 | 99.148 | 352 | 3 | 0 | 1 | 352 | 1 | 352 | 0.0 | 720 |
| MS.gene51926.t1 | MTR_3g092840 | 61.493 | 335 | 114 | 5 | 23 | 352 | 18 | 342 | 8.33e-150 | 426 |
| MS.gene51926.t1 | MTR_3g092830 | 55.319 | 94 | 40 | 1 | 259 | 352 | 1 | 92 | 4.90e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51926.t1 | AT1G12910 | 91.477 | 352 | 24 | 2 | 1 | 352 | 1 | 346 | 0.0 | 664 |
| MS.gene51926.t1 | AT3G26640 | 86.080 | 352 | 43 | 2 | 1 | 352 | 1 | 346 | 0.0 | 624 |
| MS.gene51926.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene51926.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene51926.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene51926.t1 | AT5G24520 | 62.069 | 348 | 118 | 6 | 10 | 352 | 3 | 341 | 1.01e-155 | 441 |
| MS.gene51926.t1 | AT1G18830 | 24.859 | 177 | 114 | 4 | 138 | 302 | 112 | 281 | 2.56e-11 | 65.5 |
| MS.gene51926.t1 | AT1G18830 | 24.859 | 177 | 114 | 4 | 138 | 302 | 112 | 281 | 2.56e-11 | 65.5 |
| MS.gene51926.t1 | AT1G18830 | 24.859 | 177 | 114 | 4 | 138 | 302 | 112 | 281 | 2.59e-11 | 65.5 |
| MS.gene51926.t1 | AT4G35050 | 24.444 | 225 | 142 | 10 | 149 | 352 | 177 | 394 | 5.82e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTAAGCTTCAGATTCTT+AGG | 0.130906 | 7.1:+20232475 | MS.gene51926:CDS |
| TTCCAATCAAAAGAAGTAAT+TGG | 0.178566 | 7.1:-20231871 | None:intergenic |
| CCTCCGATTTCCTCCGTATT+TGG | 0.189798 | 7.1:+20231755 | MS.gene51926:CDS |
| AGGTGGGCTTGATCCTATTT+TGG | 0.218068 | 7.1:+20232377 | MS.gene51926:CDS |
| TTCAGAACTTTCGTAAATTA+TGG | 0.245041 | 7.1:-20232100 | None:intergenic |
| TGAACGATTTCGACGCGGTT+AGG | 0.301990 | 7.1:-20231607 | None:intergenic |
| GATTTGGGATCTTTCTTCAA+TGG | 0.308847 | 7.1:+20232341 | MS.gene51926:CDS |
| TTTCTGCTGATGGGTCTGTT+AGG | 0.312772 | 7.1:+20232046 | MS.gene51926:CDS |
| GGGCGTTGGCAGTCTTTGTC+AGG | 0.322893 | 7.1:-20231715 | None:intergenic |
| ATGATTCTCAGGCGTTGATT+TGG | 0.327910 | 7.1:+20232325 | MS.gene51926:CDS |
| GAGGAGGTGGCGAGGAGGTC+GGG | 0.337769 | 7.1:-20231736 | None:intergenic |
| GTCTTCTTCTCAGCCTGATT+GGG | 0.338432 | 7.1:+20232437 | MS.gene51926:CDS |
| GGTCTTCTTCTCAGCCTGAT+TGG | 0.338481 | 7.1:+20232436 | MS.gene51926:CDS |
| TGATTCTCAGGCGTTGATTT+GGG | 0.344030 | 7.1:+20232326 | MS.gene51926:CDS |
| TAAACAAGATCCTAGGTATA+TGG | 0.347324 | 7.1:+20232155 | MS.gene51926:CDS |
| ATTTGGGATCTTTCTTCAAT+GGG | 0.351970 | 7.1:+20232342 | MS.gene51926:CDS |
| AGCCTAACCAACGGTGTATC+AGG | 0.360847 | 7.1:-20232123 | None:intergenic |
| CCAGCAGTATAAGCCAAAAT+AGG | 0.361162 | 7.1:-20232390 | None:intergenic |
| GTATATGGCAACGATTATAA+TGG | 0.363636 | 7.1:+20232170 | MS.gene51926:CDS |
| GGATGTTCGAAGGAGAGATT+TGG | 0.364624 | 7.1:-20231664 | None:intergenic |
| ATGGATTTGGTGGGTGGGTA+AGG | 0.374091 | 7.1:-20231685 | None:intergenic |
| GTTGCTCGTCGGAAGTGTCT+TGG | 0.374416 | 7.1:-20231468 | None:intergenic |
| CGACACAACGTGTACCATTT+GGG | 0.395220 | 7.1:+20231930 | MS.gene51926:CDS |
| TCGACACAACGTGTACCATT+TGG | 0.395312 | 7.1:+20231929 | MS.gene51926:CDS |
| GTCAGGGATGAAGATGGATT+TGG | 0.401641 | 7.1:-20231698 | None:intergenic |
| AGGAGGTGGCGAGGAGGTCG+GGG | 0.406903 | 7.1:-20231735 | None:intergenic |
| AAGAGGTTTATGATATAGCT+TGG | 0.407143 | 7.1:+20231998 | MS.gene51926:CDS |
| AGAGGTTTATGATATAGCTT+GGG | 0.414776 | 7.1:+20231999 | MS.gene51926:CDS |
| TTCTGCTGATGGGTCTGTTA+GGG | 0.416523 | 7.1:+20232047 | MS.gene51926:CDS |
| TCAATGGGGCAGCCTGTTGA+AGG | 0.416805 | 7.1:+20232357 | MS.gene51926:CDS |
| TTTGCGTCGGTTTCTGCTGA+TGG | 0.417377 | 7.1:+20232036 | MS.gene51926:CDS |
| CCGCCAAATACGGAGGAAAT+CGG | 0.418339 | 7.1:-20231758 | None:intergenic |
| GAACGATTTCGACGCGGTTA+GGG | 0.418818 | 7.1:-20231606 | None:intergenic |
| CACTGCTGGTGATGATTCTC+AGG | 0.422046 | 7.1:+20232314 | MS.gene51926:CDS |
| TCCAATCAAAAGAAGTAATT+GGG | 0.422669 | 7.1:-20231870 | None:intergenic |
| TTCTTTCTCAATATCCCAAA+TGG | 0.431809 | 7.1:-20231944 | None:intergenic |
| CGTCGGAAGTGTCTTGGGTT+GGG | 0.435334 | 7.1:-20231462 | None:intergenic |
| CTGAGATTGAACAGCTTCAA+TGG | 0.437364 | 7.1:+20232415 | MS.gene51926:CDS |
| TGGCGAGGAGGTCGGGGCGT+TGG | 0.442078 | 7.1:-20231729 | None:intergenic |
| GACTAAGCTTCAGATTCTTA+GGG | 0.451874 | 7.1:+20232476 | MS.gene51926:CDS |
| AAAGCAATAGCAACCCAATC+AGG | 0.452793 | 7.1:-20232450 | None:intergenic |
| CGCAATTAACTGCGTATCAA+CGG | 0.454016 | 7.1:-20231968 | None:intergenic |
| ATGGGGCAGCCTGTTGAAGG+TGG | 0.459832 | 7.1:+20232360 | MS.gene51926:CDS |
| CGACGCTGATTCGTCGGAAT+CGG | 0.459940 | 7.1:-20231785 | None:intergenic |
| TTGCTCGTCGGAAGTGTCTT+GGG | 0.460024 | 7.1:-20231467 | None:intergenic |
| GATATAGCTTGGGGTGGTGT+TGG | 0.461083 | 7.1:+20232009 | MS.gene51926:CDS |
| TTGCGTCGGTTTCTGCTGAT+GGG | 0.464907 | 7.1:+20232037 | MS.gene51926:CDS |
| TCGTCGGAAGTGTCTTGGGT+TGG | 0.465598 | 7.1:-20231463 | None:intergenic |
| GGATCAAGCCCACCTTCAAC+AGG | 0.465837 | 7.1:-20232369 | None:intergenic |
| GAAGCTGAACCACGTCGAAT+CGG | 0.471288 | 7.1:+20231895 | MS.gene51926:CDS |
| GGCACATCTACGCTATGAAC+TGG | 0.475900 | 7.1:+20231527 | MS.gene51926:CDS |
| GTTAATTGCGCATGATAAAG+AGG | 0.479182 | 7.1:+20231981 | MS.gene51926:CDS |
| CCGATTTCCTCCGTATTTGG+CGG | 0.480379 | 7.1:+20231758 | MS.gene51926:CDS |
| GATGTTCGAAGGAGAGATTT+GGG | 0.482799 | 7.1:-20231663 | None:intergenic |
| AATCGGAGATCCGCCAAATA+CGG | 0.485839 | 7.1:-20231768 | None:intergenic |
| GTCTTTGTCAGGGATGAAGA+TGG | 0.492695 | 7.1:-20231704 | None:intergenic |
| CACCGTTGGTTAGGCTAGGT+TGG | 0.498966 | 7.1:+20232130 | MS.gene51926:CDS |
| ACTATGCGGCGCCCACGCTA+TGG | 0.499007 | 7.1:-20232277 | None:intergenic |
| AGGGATGAAGATGGATTTGG+TGG | 0.499516 | 7.1:-20231695 | None:intergenic |
| TCGTGTCATATTTGCACTGC+TGG | 0.500103 | 7.1:+20232300 | MS.gene51926:CDS |
| GGAGGAGGTGGCGAGGAGGT+CGG | 0.504036 | 7.1:-20231737 | None:intergenic |
| GTTGGAATAAACAAGATCCT+AGG | 0.507846 | 7.1:+20232148 | MS.gene51926:CDS |
| ACGGAGGAAATCGGAGGAGG+TGG | 0.513893 | 7.1:-20231749 | None:intergenic |
| GGCGTTGGCAGTCTTTGTCA+GGG | 0.522445 | 7.1:-20231714 | None:intergenic |
| GATTATAATGGATTCTGCTA+AGG | 0.524815 | 7.1:+20232182 | MS.gene51926:CDS |
| ATGAAGATGGATTTGGTGGG+TGG | 0.531828 | 7.1:-20231691 | None:intergenic |
| TGGGGCAGCCTGTTGAAGGT+GGG | 0.536184 | 7.1:+20232361 | MS.gene51926:CDS |
| GAACTCAAAAGTCTTCTCAA+TGG | 0.538802 | 7.1:+20231823 | MS.gene51926:CDS |
| TTCGAAGGAGAGATTTGGGT+CGG | 0.542384 | 7.1:-20231659 | None:intergenic |
| AACCTGATACACCGTTGGTT+AGG | 0.543600 | 7.1:+20232121 | MS.gene51926:CDS |
| GGAAATCGGAGGAGGTGGCG+AGG | 0.553341 | 7.1:-20231744 | None:intergenic |
| CTAAGAGAGAAGCGATAGCG+AGG | 0.568922 | 7.1:-20231576 | None:intergenic |
| AACTCCACCACCGGTAGCGT+TGG | 0.572521 | 7.1:-20232228 | None:intergenic |
| GTCGGATTTGATTTCGCCGG+TGG | 0.588124 | 7.1:-20231641 | None:intergenic |
| TGTCTCTGCAACTCCACCAC+CGG | 0.590157 | 7.1:-20232237 | None:intergenic |
| TGAAGATGGATTTGGTGGGT+GGG | 0.592001 | 7.1:-20231690 | None:intergenic |
| TTCTGAACCTGATACACCGT+TGG | 0.592173 | 7.1:+20232116 | MS.gene51926:CDS |
| AATACGGAGGAAATCGGAGG+AGG | 0.595705 | 7.1:-20231752 | None:intergenic |
| TGGGTCGGATTTGATTTCGC+CGG | 0.599155 | 7.1:-20231644 | None:intergenic |
| AGACTCCGACGCTGATTCGT+CGG | 0.602656 | 7.1:-20231791 | None:intergenic |
| CGGAGATCCGCCAAATACGG+AGG | 0.602926 | 7.1:-20231765 | None:intergenic |
| TTCATAGCGTAGATGTGCCA+TGG | 0.606486 | 7.1:-20231523 | None:intergenic |
| TAGTGTGAATGCCATAGCGT+GGG | 0.611881 | 7.1:+20232266 | MS.gene51926:CDS |
| GATACACCGTTGGTTAGGCT+AGG | 0.616430 | 7.1:+20232126 | MS.gene51926:CDS |
| ATAATCGTTGCCATATACCT+AGG | 0.620729 | 7.1:-20232165 | None:intergenic |
| GAATCAGCGTCGGAGTCTCG+TGG | 0.628287 | 7.1:+20231796 | MS.gene51926:CDS |
| AATCGGAGGAGGTGGCGAGG+AGG | 0.630478 | 7.1:-20231741 | None:intergenic |
| GTTTATGATATAGCTTGGGG+TGG | 0.631893 | 7.1:+20232003 | MS.gene51926:CDS |
| TTCCAACCTAGCCTAACCAA+CGG | 0.643891 | 7.1:-20232132 | None:intergenic |
| GGGATGAAGATGGATTTGGT+GGG | 0.648292 | 7.1:-20231694 | None:intergenic |
| CGATTCCGACGAATCAGCGT+CGG | 0.649196 | 7.1:+20231786 | MS.gene51926:CDS |
| TTTGGGATCTTTCTTCAATG+GGG | 0.652017 | 7.1:+20232343 | MS.gene51926:CDS |
| GTTCAGCTTGATGACACCAC+CGG | 0.655354 | 7.1:+20231625 | MS.gene51926:CDS |
| GGGTGGGTAAGGATGTTCGA+AGG | 0.657390 | 7.1:-20231674 | None:intergenic |
| CTAGTGTGAATGCCATAGCG+TGG | 0.659753 | 7.1:+20232265 | MS.gene51926:CDS |
| CAAATATGACACGAACTATG+CGG | 0.670679 | 7.1:-20232291 | None:intergenic |
| GAGGTTTATGATATAGCTTG+GGG | 0.671285 | 7.1:+20232000 | MS.gene51926:CDS |
| CTCGAAGTACCGATTCGACG+TGG | 0.693978 | 7.1:-20231904 | None:intergenic |
| TCTACACTTACGAAGCACCA+TGG | 0.695382 | 7.1:+20231506 | MS.gene51926:CDS |
| CCAAATACGGAGGAAATCGG+AGG | 0.698544 | 7.1:-20231755 | None:intergenic |
| CAAGCTGAACGATTTCGACG+CGG | 0.729457 | 7.1:-20231612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATAAAAACAGTGAATACTG+TGG | + | chr7.1:20231847-20231866 | MS.gene51926:CDS | 25.0% |
| ! | TCCAATCAAAAGAAGTAATT+GGG | - | chr7.1:20231873-20231892 | None:intergenic | 25.0% |
| ! | TTCAGAACTTTCGTAAATTA+TGG | - | chr7.1:20232103-20232122 | None:intergenic | 25.0% |
| ! | TTCCAATCAAAAGAAGTAAT+TGG | - | chr7.1:20231874-20231893 | None:intergenic | 25.0% |
| AAGAGGTTTATGATATAGCT+TGG | + | chr7.1:20231998-20232017 | MS.gene51926:CDS | 30.0% | |
| AGAGGTTTATGATATAGCTT+GGG | + | chr7.1:20231999-20232018 | MS.gene51926:CDS | 30.0% | |
| GTATATGGCAACGATTATAA+TGG | + | chr7.1:20232170-20232189 | MS.gene51926:CDS | 30.0% | |
| TAAACAAGATCCTAGGTATA+TGG | + | chr7.1:20232155-20232174 | MS.gene51926:CDS | 30.0% | |
| TTCTTTCTCAATATCCCAAA+TGG | - | chr7.1:20231947-20231966 | None:intergenic | 30.0% | |
| ! | ATTTGGGATCTTTCTTCAAT+GGG | + | chr7.1:20232342-20232361 | MS.gene51926:CDS | 30.0% |
| !! | GATTATAATGGATTCTGCTA+AGG | + | chr7.1:20232182-20232201 | MS.gene51926:CDS | 30.0% |
| ATAATCGTTGCCATATACCT+AGG | - | chr7.1:20232168-20232187 | None:intergenic | 35.0% | |
| CAAATATGACACGAACTATG+CGG | - | chr7.1:20232294-20232313 | None:intergenic | 35.0% | |
| GAACTCAAAAGTCTTCTCAA+TGG | + | chr7.1:20231823-20231842 | MS.gene51926:CDS | 35.0% | |
| GACTAAGCTTCAGATTCTTA+GGG | + | chr7.1:20232476-20232495 | MS.gene51926:CDS | 35.0% | |
| GAGGTTTATGATATAGCTTG+GGG | + | chr7.1:20232000-20232019 | MS.gene51926:CDS | 35.0% | |
| GTTAATTGCGCATGATAAAG+AGG | + | chr7.1:20231981-20232000 | MS.gene51926:CDS | 35.0% | |
| GTTGGAATAAACAAGATCCT+AGG | + | chr7.1:20232148-20232167 | MS.gene51926:CDS | 35.0% | |
| ! | GATTTGGGATCTTTCTTCAA+TGG | + | chr7.1:20232341-20232360 | MS.gene51926:CDS | 35.0% |
| ! | GCCCAATTACTTCTTTTGAT+TGG | + | chr7.1:20231869-20231888 | MS.gene51926:CDS | 35.0% |
| ! | TTTGGGATCTTTCTTCAATG+GGG | + | chr7.1:20232343-20232362 | MS.gene51926:CDS | 35.0% |
| AAAGCAATAGCAACCCAATC+AGG | - | chr7.1:20232453-20232472 | None:intergenic | 40.0% | |
| CCAGCAGTATAAGCCAAAAT+AGG | - | chr7.1:20232393-20232412 | None:intergenic | 40.0% | |
| CGACTAAGCTTCAGATTCTT+AGG | + | chr7.1:20232475-20232494 | MS.gene51926:CDS | 40.0% | |
| CGCAATTAACTGCGTATCAA+CGG | - | chr7.1:20231971-20231990 | None:intergenic | 40.0% | |
| CTGAGATTGAACAGCTTCAA+TGG | + | chr7.1:20232415-20232434 | MS.gene51926:CDS | 40.0% | |
| GATGTTCGAAGGAGAGATTT+GGG | - | chr7.1:20231666-20231685 | None:intergenic | 40.0% | |
| GTTTATGATATAGCTTGGGG+TGG | + | chr7.1:20232003-20232022 | MS.gene51926:CDS | 40.0% | |
| ! | TATTCGTTTTCCAACGCTAC+CGG | + | chr7.1:20232218-20232237 | MS.gene51926:CDS | 40.0% |
| !! | ATGATTCTCAGGCGTTGATT+TGG | + | chr7.1:20232325-20232344 | MS.gene51926:CDS | 40.0% |
| !! | TGATTCTCAGGCGTTGATTT+GGG | + | chr7.1:20232326-20232345 | MS.gene51926:CDS | 40.0% |
| !!! | CCTATTTTGGCTTATACTGC+TGG | + | chr7.1:20232390-20232409 | MS.gene51926:CDS | 40.0% |
| AATCGGAGATCCGCCAAATA+CGG | - | chr7.1:20231771-20231790 | None:intergenic | 45.0% | |
| CGACACAACGTGTACCATTT+GGG | + | chr7.1:20231930-20231949 | MS.gene51926:CDS | 45.0% | |
| CGACGAGCAACAAAAACGTT+CGG | + | chr7.1:20231480-20231499 | MS.gene51926:CDS | 45.0% | |
| GGATGTTCGAAGGAGAGATT+TGG | - | chr7.1:20231667-20231686 | None:intergenic | 45.0% | |
| GTCTTCTTCTCAGCCTGATT+GGG | + | chr7.1:20232437-20232456 | MS.gene51926:CDS | 45.0% | |
| GTCTTTGTCAGGGATGAAGA+TGG | - | chr7.1:20231707-20231726 | None:intergenic | 45.0% | |
| TAGTGTGAATGCCATAGCGT+GGG | + | chr7.1:20232266-20232285 | MS.gene51926:CDS | 45.0% | |
| TCGACACAACGTGTACCATT+TGG | + | chr7.1:20231929-20231948 | MS.gene51926:CDS | 45.0% | |
| TCGTGTCATATTTGCACTGC+TGG | + | chr7.1:20232300-20232319 | MS.gene51926:CDS | 45.0% | |
| TTCATAGCGTAGATGTGCCA+TGG | - | chr7.1:20231526-20231545 | None:intergenic | 45.0% | |
| TTCCAACCTAGCCTAACCAA+CGG | - | chr7.1:20232135-20232154 | None:intergenic | 45.0% | |
| TTCGAAGGAGAGATTTGGGT+CGG | - | chr7.1:20231662-20231681 | None:intergenic | 45.0% | |
| TTCTGAACCTGATACACCGT+TGG | + | chr7.1:20232116-20232135 | MS.gene51926:CDS | 45.0% | |
| ! | AACCTGATACACCGTTGGTT+AGG | + | chr7.1:20232121-20232140 | MS.gene51926:CDS | 45.0% |
| ! | AGGGATGAAGATGGATTTGG+TGG | - | chr7.1:20231698-20231717 | None:intergenic | 45.0% |
| ! | CGAACGTTTTTGTTGCTCGT+CGG | - | chr7.1:20231482-20231501 | None:intergenic | 45.0% |
| ! | GGGATGAAGATGGATTTGGT+GGG | - | chr7.1:20231697-20231716 | None:intergenic | 45.0% |
| ! | GTCAGGGATGAAGATGGATT+TGG | - | chr7.1:20231701-20231720 | None:intergenic | 45.0% |
| ! | TCTACACTTACGAAGCACCA+TGG | + | chr7.1:20231506-20231525 | MS.gene51926:CDS | 45.0% |
| ! | TTCTGCTGATGGGTCTGTTA+GGG | + | chr7.1:20232047-20232066 | MS.gene51926:CDS | 45.0% |
| ! | TTTCTGCTGATGGGTCTGTT+AGG | + | chr7.1:20232046-20232065 | MS.gene51926:CDS | 45.0% |
| !! | AGGTGGGCTTGATCCTATTT+TGG | + | chr7.1:20232377-20232396 | MS.gene51926:CDS | 45.0% |
| !! | ATGAAGATGGATTTGGTGGG+TGG | - | chr7.1:20231694-20231713 | None:intergenic | 45.0% |
| !! | TGAAGATGGATTTGGTGGGT+GGG | - | chr7.1:20231693-20231712 | None:intergenic | 45.0% |
| !!! | GGCGATATTTTTTGTCGCGA+CGG | - | chr7.1:20231558-20231577 | None:intergenic | 45.0% |
| !!! | TGGTGTTGGTGTTTTTGCGT+CGG | + | chr7.1:20232023-20232042 | MS.gene51926:CDS | 45.0% |
| AATACGGAGGAAATCGGAGG+AGG | - | chr7.1:20231755-20231774 | None:intergenic | 50.0% | |
| AGCCTAACCAACGGTGTATC+AGG | - | chr7.1:20232126-20232145 | None:intergenic | 50.0% | |
| CAAGCTGAACGATTTCGACG+CGG | - | chr7.1:20231615-20231634 | None:intergenic | 50.0% | |
| CCAAATACGGAGGAAATCGG+AGG | - | chr7.1:20231758-20231777 | None:intergenic | 50.0% | |
| CCGATTTCCTCCGTATTTGG+CGG | + | chr7.1:20231758-20231777 | MS.gene51926:CDS | 50.0% | |
| CCGCCAAATACGGAGGAAAT+CGG | - | chr7.1:20231761-20231780 | None:intergenic | 50.0% | |
| CCTCCGATTTCCTCCGTATT+TGG | + | chr7.1:20231755-20231774 | MS.gene51926:CDS | 50.0% | |
| CTAAGAGAGAAGCGATAGCG+AGG | - | chr7.1:20231579-20231598 | None:intergenic | 50.0% | |
| CTAGTGTGAATGCCATAGCG+TGG | + | chr7.1:20232265-20232284 | MS.gene51926:CDS | 50.0% | |
| GAACGATTTCGACGCGGTTA+GGG | - | chr7.1:20231609-20231628 | None:intergenic | 50.0% | |
| GAAGCTGAACCACGTCGAAT+CGG | + | chr7.1:20231895-20231914 | MS.gene51926:CDS | 50.0% | |
| GATATAGCTTGGGGTGGTGT+TGG | + | chr7.1:20232009-20232028 | MS.gene51926:CDS | 50.0% | |
| GGCACATCTACGCTATGAAC+TGG | + | chr7.1:20231527-20231546 | MS.gene51926:CDS | 50.0% | |
| GGTCTTCTTCTCAGCCTGAT+TGG | + | chr7.1:20232436-20232455 | MS.gene51926:CDS | 50.0% | |
| TGAACGATTTCGACGCGGTT+AGG | - | chr7.1:20231610-20231629 | None:intergenic | 50.0% | |
| ! | CACTGCTGGTGATGATTCTC+AGG | + | chr7.1:20232314-20232333 | MS.gene51926:CDS | 50.0% |
| ! | GATACACCGTTGGTTAGGCT+AGG | + | chr7.1:20232126-20232145 | MS.gene51926:CDS | 50.0% |
| ! | GTTCAGCTTGATGACACCAC+CGG | + | chr7.1:20231625-20231644 | MS.gene51926:CDS | 50.0% |
| ! | TGGGTCGGATTTGATTTCGC+CGG | - | chr7.1:20231647-20231666 | None:intergenic | 50.0% |
| !! | ATGGATTTGGTGGGTGGGTA+AGG | - | chr7.1:20231688-20231707 | None:intergenic | 50.0% |
| !! | TTGCGTCGGTTTCTGCTGAT+GGG | + | chr7.1:20232037-20232056 | MS.gene51926:CDS | 50.0% |
| !! | TTGCTCGTCGGAAGTGTCTT+GGG | - | chr7.1:20231470-20231489 | None:intergenic | 50.0% |
| !! | TTTGCGTCGGTTTCTGCTGA+TGG | + | chr7.1:20232036-20232055 | MS.gene51926:CDS | 50.0% |
| CGATTCCGACGAATCAGCGT+CGG | + | chr7.1:20231786-20231805 | MS.gene51926:CDS | 55.0% | |
| GGATCAAGCCCACCTTCAAC+AGG | - | chr7.1:20232372-20232391 | None:intergenic | 55.0% | |
| GGGTGGGTAAGGATGTTCGA+AGG | - | chr7.1:20231677-20231696 | None:intergenic | 55.0% | |
| TCAATGGGGCAGCCTGTTGA+AGG | + | chr7.1:20232357-20232376 | MS.gene51926:CDS | 55.0% | |
| TGTCTCTGCAACTCCACCAC+CGG | - | chr7.1:20232240-20232259 | None:intergenic | 55.0% | |
| ! | CACCGTTGGTTAGGCTAGGT+TGG | + | chr7.1:20232130-20232149 | MS.gene51926:CDS | 55.0% |
| ! | GTCGGATTTGATTTCGCCGG+TGG | - | chr7.1:20231644-20231663 | None:intergenic | 55.0% |
| ! | TCGTTTTCCAACGCTACCGG+TGG | + | chr7.1:20232221-20232240 | MS.gene51926:CDS | 55.0% |
| ! | TTTTCCAACGCTACCGGTGG+TGG | + | chr7.1:20232224-20232243 | MS.gene51926:CDS | 55.0% |
| !! | AGACTCCGACGCTGATTCGT+CGG | - | chr7.1:20231794-20231813 | None:intergenic | 55.0% |
| !! | CGACGCTGATTCGTCGGAAT+CGG | - | chr7.1:20231788-20231807 | None:intergenic | 55.0% |
| !! | CGTCGGAAGTGTCTTGGGTT+GGG | - | chr7.1:20231465-20231484 | None:intergenic | 55.0% |
| !! | CTCGAAGTACCGATTCGACG+TGG | - | chr7.1:20231907-20231926 | None:intergenic | 55.0% |
| !! | GGCGTTGGCAGTCTTTGTCA+GGG | - | chr7.1:20231717-20231736 | None:intergenic | 55.0% |
| !! | GTTGCTCGTCGGAAGTGTCT+TGG | - | chr7.1:20231471-20231490 | None:intergenic | 55.0% |
| !! | TCGTCGGAAGTGTCTTGGGT+TGG | - | chr7.1:20231466-20231485 | None:intergenic | 55.0% |
| AACTCCACCACCGGTAGCGT+TGG | - | chr7.1:20232231-20232250 | None:intergenic | 60.0% | |
| ACGGAGGAAATCGGAGGAGG+TGG | - | chr7.1:20231752-20231771 | None:intergenic | 60.0% | |
| ATGGGGCAGCCTGTTGAAGG+TGG | + | chr7.1:20232360-20232379 | MS.gene51926:CDS | 60.0% | |
| CGGAGATCCGCCAAATACGG+AGG | - | chr7.1:20231768-20231787 | None:intergenic | 60.0% | |
| TGGGGCAGCCTGTTGAAGGT+GGG | + | chr7.1:20232361-20232380 | MS.gene51926:CDS | 60.0% | |
| ! | GAATCAGCGTCGGAGTCTCG+TGG | + | chr7.1:20231796-20231815 | MS.gene51926:CDS | 60.0% |
| !! | GGGCGTTGGCAGTCTTTGTC+AGG | - | chr7.1:20231718-20231737 | None:intergenic | 60.0% |
| AATCGGAGGAGGTGGCGAGG+AGG | - | chr7.1:20231744-20231763 | None:intergenic | 65.0% | |
| ACTATGCGGCGCCCACGCTA+TGG | - | chr7.1:20232280-20232299 | None:intergenic | 65.0% | |
| GGAAATCGGAGGAGGTGGCG+AGG | - | chr7.1:20231747-20231766 | None:intergenic | 65.0% | |
| AGGAGGTGGCGAGGAGGTCG+GGG | - | chr7.1:20231738-20231757 | None:intergenic | 70.0% | |
| GAGGAGGTGGCGAGGAGGTC+GGG | - | chr7.1:20231739-20231758 | None:intergenic | 70.0% | |
| GGAGGAGGTGGCGAGGAGGT+CGG | - | chr7.1:20231740-20231759 | None:intergenic | 70.0% | |
| TGGCGAGGAGGTCGGGGCGT+TGG | - | chr7.1:20231732-20231751 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 20231445 | 20232503 | 20231445 | ID=MS.gene51926 |
| chr7.1 | mRNA | 20231445 | 20232503 | 20231445 | ID=MS.gene51926.t1;Parent=MS.gene51926 |
| chr7.1 | exon | 20231445 | 20232503 | 20231445 | ID=MS.gene51926.t1.exon1;Parent=MS.gene51926.t1 |
| chr7.1 | CDS | 20231445 | 20232503 | 20231445 | ID=cds.MS.gene51926.t1;Parent=MS.gene51926.t1 |
| Gene Sequence |
| Protein sequence |
