AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013571

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013571.t1 MTR_3g491830 96.684 392 10 2 1 391 1 390 0.0 772
MS.gene013571.t1 MTR_2g033000 33.442 308 152 10 57 347 57 328 6.51e-37 137
MS.gene013571.t1 MTR_4g123080 30.747 348 176 11 45 363 48 359 2.01e-36 137
MS.gene013571.t1 MTR_4g123080 30.636 346 175 11 47 363 32 341 2.03e-36 136
MS.gene013571.t1 MTR_1g086350 30.114 352 197 11 17 354 21 337 1.76e-33 128
MS.gene013571.t1 MTR_1g086350 31.190 311 167 9 58 354 76 353 1.65e-32 126
MS.gene013571.t1 MTR_4g007440 30.091 329 164 9 60 347 22 325 2.87e-32 125
MS.gene013571.t1 MTR_5g024340 29.703 303 164 7 60 352 84 347 3.03e-31 122
MS.gene013571.t1 MTR_4g116420 29.801 302 164 8 58 347 82 347 3.28e-31 122
MS.gene013571.t1 MTR_1g014190 29.143 350 183 7 60 368 22 347 8.84e-31 120
MS.gene013571.t1 MTR_1g014190 29.143 350 183 7 60 368 60 385 9.75e-31 121
MS.gene013571.t1 MTR_3g105880 27.747 364 178 8 60 372 22 351 1.46e-30 120
MS.gene013571.t1 MTR_3g107880 26.910 301 172 7 58 347 21 284 2.34e-29 116
MS.gene013571.t1 MTR_3g107880 26.910 301 172 7 58 347 78 341 4.51e-29 116
MS.gene013571.t1 MTR_3g107880 26.910 301 172 7 58 347 79 342 4.96e-29 116
MS.gene013571.t1 MTR_1g086350 29.710 276 157 7 83 354 9 251 1.87e-28 113
MS.gene013571.t1 MTR_1g115570 29.592 294 148 9 60 347 94 334 2.40e-28 114
MS.gene013571.t1 MTR_3g105730 27.362 307 167 8 49 347 19 277 2.71e-28 112
MS.gene013571.t1 MTR_1g014640 27.508 309 168 8 47 347 60 320 2.80e-28 113
MS.gene013571.t1 MTR_1g013400 27.508 309 168 8 47 347 60 320 2.80e-28 113
MS.gene013571.t1 MTR_3g105730 27.491 291 158 7 62 347 13 255 6.51e-28 111
MS.gene013571.t1 MTR_5g071550 30.479 292 147 11 68 350 130 374 7.43e-28 113
MS.gene013571.t1 MTR_6g081850 29.605 304 151 9 68 347 51 315 1.33e-26 108
MS.gene013571.t1 MTR_3g105880 29.276 304 135 7 60 317 22 291 1.93e-26 108
MS.gene013571.t1 MTR_3g068200 26.398 322 167 8 61 350 92 375 2.12e-26 109
MS.gene013571.t1 MTR_3g091060 27.931 290 156 7 63 347 96 337 1.01e-25 107
MS.gene013571.t1 MTR_3g104710 25.575 348 172 11 56 350 226 539 1.53e-24 105
MS.gene013571.t1 MTR_2g078760 28.125 288 146 10 72 350 18 253 1.31e-23 99.0
MS.gene013571.t1 MTR_1g050520 28.617 311 154 12 58 350 384 644 1.73e-23 102
MS.gene013571.t1 MTR_1g028300 30.476 315 157 12 59 353 110 382 2.68e-23 100
MS.gene013571.t1 MTR_2g078760 28.125 288 146 10 72 350 97 332 3.36e-23 99.4
MS.gene013571.t1 MTR_8g463130 29.658 263 126 9 92 347 40 250 3.53e-23 97.8
MS.gene013571.t1 MTR_4g125810 25.595 336 164 9 62 350 207 503 4.01e-23 101
MS.gene013571.t1 MTR_3g464700 29.880 251 120 7 68 310 94 296 4.35e-23 99.4
MS.gene013571.t1 MTR_8g463130 29.658 263 126 9 92 347 68 278 5.35e-23 97.8
MS.gene013571.t1 MTR_3g464650 26.415 318 171 10 47 350 46 314 6.91e-23 98.2
MS.gene013571.t1 MTR_4g094208 27.425 299 155 10 59 347 27 273 9.31e-23 97.1
MS.gene013571.t1 MTR_5g009370 28.621 290 159 8 42 320 33 285 1.13e-21 95.1
MS.gene013571.t1 MTR_1g015110 26.023 342 162 11 62 350 240 543 1.57e-21 96.7
MS.gene013571.t1 MTR_5g071550 30.992 242 113 10 68 302 130 324 7.39e-21 93.2
MS.gene013571.t1 MTR_2g040500 25.843 356 170 13 54 350 215 535 4.64e-20 92.4
MS.gene013571.t1 MTR_2g008850 27.090 299 156 11 59 347 31 277 1.10e-19 88.6
MS.gene013571.t1 MTR_8g102550 24.625 333 164 10 60 350 101 388 7.98e-19 87.8
MS.gene013571.t1 MTR_2g008850 28.137 263 130 9 92 347 21 231 1.05e-18 84.7
MS.gene013571.t1 MTR_5g080680 25.275 273 149 7 61 318 101 333 1.83e-18 86.7
MS.gene013571.t1 MTR_4g123080 33.974 156 79 3 210 363 113 246 1.95e-18 84.7
MS.gene013571.t1 MTR_4g094542 25.623 281 140 10 74 335 132 362 2.74e-18 85.9
MS.gene013571.t1 MTR_7g090530 25.697 323 193 11 72 362 52 359 3.17e-18 86.3
MS.gene013571.t1 MTR_3g032700 24.351 308 177 9 90 360 68 356 1.20e-15 78.6
MS.gene013571.t1 MTR_3g032660 24.026 308 178 9 90 360 68 356 5.56e-15 76.6
MS.gene013571.t1 MTR_3g105730 26.667 180 111 5 49 223 19 182 8.42e-15 73.6
MS.gene013571.t1 MTR_1g110210 27.055 292 152 10 83 359 61 306 1.62e-14 74.3
MS.gene013571.t1 MTR_7g090550 24.917 301 188 10 72 354 53 333 5.75e-14 73.6
MS.gene013571.t1 MTR_5g080680 27.179 195 115 6 61 240 101 283 1.48e-13 70.9
MS.gene013571.t1 MTR_5g071550 34.058 138 74 5 68 202 130 253 4.61e-13 69.3
MS.gene013571.t1 MTR_7g060770 24.919 309 183 11 86 358 259 554 9.34e-13 70.1
MS.gene013571.t1 MTR_7g100240 26.378 254 139 10 89 319 70 298 1.70e-12 68.6
MS.gene013571.t1 MTR_1g112840 24.830 294 167 8 44 318 49 307 2.29e-12 68.2
MS.gene013571.t1 MTR_1g106855 26.531 245 140 7 89 313 60 284 2.47e-12 67.4
MS.gene013571.t1 MTR_1g067210 26.829 246 142 9 89 316 75 300 3.20e-12 67.8
MS.gene013571.t1 MTR_1g106855 26.531 245 140 7 89 313 60 284 4.36e-12 67.4
MS.gene013571.t1 MTR_7g081020 25.514 243 153 8 89 318 75 302 1.24e-11 65.5
MS.gene013571.t1 MTR_7g081020 25.514 243 153 8 89 318 75 302 1.54e-11 65.9
MS.gene013571.t1 MTR_8g074930 24.291 247 147 10 89 316 78 303 6.63e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013571.t1 AT4G27800 63.613 393 135 4 1 390 1 388 0.0 514
MS.gene013571.t1 AT4G27800 63.314 338 116 4 1 335 1 333 1.61e-152 434
MS.gene013571.t1 AT4G27800 62.121 330 117 4 1 327 1 325 3.37e-146 417
MS.gene013571.t1 AT3G62260 30.000 330 182 9 51 363 67 364 7.44e-35 132
MS.gene013571.t1 AT3G62260 30.000 330 182 9 51 363 68 365 7.73e-35 132
MS.gene013571.t1 AT1G43900 32.192 292 142 10 62 347 124 365 1.68e-31 123
MS.gene013571.t1 AT3G51470 27.703 296 168 6 58 347 25 280 2.24e-31 121
MS.gene013571.t1 AT3G62260 29.537 281 161 7 89 363 26 275 2.30e-31 121
MS.gene013571.t1 AT3G51470 27.703 296 168 6 58 347 69 324 5.11e-31 121
MS.gene013571.t1 AT2G25620 26.974 304 178 7 58 350 86 356 2.23e-29 117
MS.gene013571.t1 AT2G25620 26.974 304 178 7 58 350 86 356 2.23e-29 117
MS.gene013571.t1 AT5G53140 27.987 318 175 9 56 368 96 364 1.57e-28 115
MS.gene013571.t1 AT5G53140 27.987 318 175 9 56 368 96 364 1.57e-28 115
MS.gene013571.t1 AT2G33700 26.814 317 183 5 58 364 81 358 1.63e-28 115
MS.gene013571.t1 AT3G17250 29.664 327 176 13 41 347 98 390 3.95e-28 114
MS.gene013571.t1 AT2G25070 27.616 344 164 8 60 352 22 331 4.03e-28 113
MS.gene013571.t1 AT2G25070 27.616 344 164 8 60 352 22 331 4.03e-28 113
MS.gene013571.t1 AT5G24940 27.922 308 166 9 48 347 17 276 6.49e-28 114
MS.gene013571.t1 AT1G48040 29.595 321 176 11 58 363 75 360 8.35e-28 113
MS.gene013571.t1 AT4G31750 29.562 274 141 7 49 314 18 247 1.30e-27 111
MS.gene013571.t1 AT4G31750 29.562 274 141 7 49 314 18 247 2.15e-27 110
MS.gene013571.t1 AT4G31750 29.562 274 141 7 49 314 18 247 2.15e-27 110
MS.gene013571.t1 AT5G59220 28.374 289 140 7 61 326 111 355 3.31e-27 112
MS.gene013571.t1 AT4G31860 28.485 330 169 9 60 347 22 326 4.74e-27 110
MS.gene013571.t1 AT1G67820 32.692 260 120 8 62 313 85 297 5.06e-27 111
MS.gene013571.t1 AT1G67820 32.692 260 120 8 62 313 121 333 6.49e-27 111
MS.gene013571.t1 AT2G29380 27.640 322 163 9 61 350 77 360 7.03e-27 110
MS.gene013571.t1 AT1G07160 28.788 330 164 11 44 350 95 376 1.56e-26 109
MS.gene013571.t1 AT1G18030 30.100 299 156 9 68 347 81 345 1.59e-26 109
MS.gene013571.t1 AT5G10740 27.597 308 167 9 48 347 17 276 1.96e-26 108
MS.gene013571.t1 AT5G10740 27.597 308 167 9 48 347 17 276 1.96e-26 108
MS.gene013571.t1 AT2G40180 31.058 293 150 11 68 350 135 385 3.25e-26 108
MS.gene013571.t1 AT2G40860 28.076 317 167 11 47 350 282 550 6.58e-25 107
MS.gene013571.t1 AT4G31860 29.492 295 146 8 60 317 22 291 7.23e-25 103
MS.gene013571.t1 AT2G40860 28.076 317 167 11 47 350 380 648 7.28e-25 107
MS.gene013571.t1 AT2G30020 28.767 292 154 9 68 350 146 392 1.10e-23 102
MS.gene013571.t1 AT2G40860 28.904 301 154 11 47 332 380 635 1.10e-23 103
MS.gene013571.t1 AT4G28400 26.855 283 146 9 74 347 27 257 3.61e-23 98.2
MS.gene013571.t1 AT1G07430 25.070 359 166 11 55 350 115 433 3.68e-23 100
MS.gene013571.t1 AT4G28400 26.855 283 146 9 74 347 49 279 6.75e-23 97.8
MS.gene013571.t1 AT3G15260 27.465 284 145 11 73 347 54 285 2.58e-22 96.3
MS.gene013571.t1 AT3G15260 27.465 284 145 11 73 347 54 285 2.58e-22 96.3
MS.gene013571.t1 AT2G20630 27.208 283 145 10 74 347 45 275 2.47e-21 93.2
MS.gene013571.t1 AT2G20630 27.208 283 145 10 74 347 45 275 4.84e-21 92.8
MS.gene013571.t1 AT5G57050 24.926 337 167 10 62 350 73 371 5.53e-21 94.0
MS.gene013571.t1 AT3G11410 28.082 292 156 9 49 321 94 350 7.38e-21 94.0
MS.gene013571.t1 AT5G57050 24.926 337 167 10 62 350 113 411 8.19e-21 94.0
MS.gene013571.t1 AT1G18030 30.830 253 123 9 68 302 81 299 1.82e-20 91.3
MS.gene013571.t1 AT1G17550 24.286 350 167 10 62 350 189 501 3.74e-20 92.4
MS.gene013571.t1 AT1G17550 24.286 350 167 10 62 350 189 501 3.74e-20 92.4
MS.gene013571.t1 AT4G31860 28.674 279 137 8 60 301 22 275 5.09e-20 89.4
MS.gene013571.t1 AT1G72770 25.000 356 167 12 56 350 185 501 5.99e-20 92.0
MS.gene013571.t1 AT1G72770 25.000 356 167 12 56 350 185 501 5.99e-20 92.0
MS.gene013571.t1 AT1G72770 25.000 356 167 12 56 350 185 501 5.99e-20 92.0
MS.gene013571.t1 AT2G34740 27.113 284 144 12 74 347 101 331 6.58e-20 90.5
MS.gene013571.t1 AT4G26080 24.348 345 177 11 62 361 129 434 2.59e-19 89.7
MS.gene013571.t1 AT1G78200 25.000 296 167 9 60 347 31 279 2.61e-18 84.7
MS.gene013571.t1 AT1G78200 25.000 296 167 9 60 347 31 279 2.61e-18 84.7
MS.gene013571.t1 AT1G78200 25.000 296 167 9 60 347 31 279 2.61e-18 84.7
MS.gene013571.t1 AT5G59220 28.922 204 106 6 61 241 111 298 3.37e-18 84.7
MS.gene013571.t1 AT1G78200 25.267 281 156 8 74 347 1 234 4.81e-18 83.2
MS.gene013571.t1 AT1G78200 25.267 281 156 8 74 347 1 234 4.81e-18 83.2
MS.gene013571.t1 AT5G51760 24.496 347 173 9 55 350 73 381 9.99e-18 84.3
MS.gene013571.t1 AT5G51760 24.496 347 173 9 55 350 103 411 1.12e-17 84.7
MS.gene013571.t1 AT1G22280 24.671 304 169 10 56 347 28 283 1.55e-17 82.8
MS.gene013571.t1 AT1G22280 25.166 302 164 10 56 347 28 277 1.80e-17 82.4
MS.gene013571.t1 AT1G34750 25.658 304 158 12 60 350 33 281 8.71e-16 77.4
MS.gene013571.t1 AT1G34750 25.658 304 158 12 60 350 33 281 8.71e-16 77.4
MS.gene013571.t1 AT1G34750 25.658 304 158 12 60 350 33 281 8.71e-16 77.4
MS.gene013571.t1 AT2G40860 28.409 264 125 11 47 294 380 595 1.02e-14 76.3
MS.gene013571.t1 AT2G34740 26.471 238 116 10 74 301 97 285 1.19e-13 71.6
MS.gene013571.t1 AT2G34740 26.471 238 116 10 74 301 115 303 1.21e-13 71.6
MS.gene013571.t1 AT5G06750 26.255 259 140 9 86 318 78 311 3.79e-13 70.9
MS.gene013571.t1 AT5G06750 26.255 259 140 9 86 318 78 311 3.79e-13 70.9
MS.gene013571.t1 AT3G17090 26.316 247 146 10 89 318 83 310 4.72e-13 69.7
MS.gene013571.t1 AT4G38520 25.397 252 144 7 89 319 80 308 5.21e-13 70.5
MS.gene013571.t1 AT4G38520 25.397 252 144 7 89 319 80 308 5.21e-13 70.5
MS.gene013571.t1 AT5G19280 28.315 279 144 12 88 350 339 577 5.60e-13 70.9
MS.gene013571.t1 AT5G57050 28.293 205 111 7 62 240 113 307 5.87e-13 69.7
MS.gene013571.t1 AT3G17090 26.316 247 146 10 89 318 83 310 7.26e-13 69.7
MS.gene013571.t1 AT5G02760 24.306 288 176 8 44 319 40 297 8.07e-13 69.7
MS.gene013571.t1 AT5G26010 29.167 288 133 12 56 313 37 283 1.50e-12 68.6
MS.gene013571.t1 AT1G34750 25.794 252 129 9 60 301 33 236 2.91e-12 66.6
MS.gene013571.t1 AT3G51370 25.000 248 148 9 89 318 78 305 4.69e-12 67.4
MS.gene013571.t1 AT3G51370 25.000 248 148 9 89 318 78 305 4.69e-12 67.4
MS.gene013571.t1 AT5G66080 24.793 242 156 7 89 318 81 308 3.21e-11 64.7
MS.gene013571.t1 AT3G06270 24.752 303 184 12 70 352 66 344 8.86e-11 63.2

Find 100 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGAGGTGGAGTGTTTA+TGG 0.113064 3.4:-83942179 None:intergenic
TCTGTTTGTGTTTATGTATT+TGG 0.232802 3.4:-83942199 None:intergenic
GAGAAACCTTGGAGACTATT+TGG 0.260980 3.4:-83942375 None:intergenic
CTTATTATTTCCTAGGAATA+TGG 0.264600 3.4:-83943295 None:intergenic
TGTTAGCATCCGATGGCTTA+TGG 0.271564 3.4:+83946993 MS.gene013571:CDS
TGAGGACTAGTTAGCAATTC+TGG 0.276029 3.4:-83943846 None:intergenic
CTGACATGAGGTTGTTAAAA+TGG 0.280042 3.4:+83943112 MS.gene013571:CDS
TTGCTGTATCCCGTGCATTT+GGG 0.314251 3.4:+83946568 MS.gene013571:CDS
AAGCTGCTAATTTCACATAT+TGG 0.316833 3.4:+83943315 MS.gene013571:CDS
ATTGCTGTATCCCGTGCATT+TGG 0.322501 3.4:+83946567 MS.gene013571:CDS
TGGAAGATGATATTATTCTT+AGG 0.339370 3.4:+83942352 MS.gene013571:CDS
AGAGTTACTTGATAAATATC+AGG 0.343230 3.4:-83946947 None:intergenic
TCTTTCGCGGCCGTGTTTGA+TGG 0.343544 3.4:+83942396 MS.gene013571:CDS
GAATTGTGTCTATTGGAATC+TGG 0.357830 3.4:+83947839 MS.gene013571:CDS
ACCGTTGGAATTGTGTCTAT+TGG 0.358693 3.4:+83947832 MS.gene013571:CDS
CAGACTCTCCTCCTATTAGA+TGG 0.360549 3.4:+83942295 MS.gene013571:CDS
ATCCCTTGCACAAGTCGTTT+TGG 0.370646 3.4:+83947278 MS.gene013571:CDS
AGCATTATAATTGCCGATCT+AGG 0.371221 3.4:+83947403 MS.gene013571:CDS
GATACTGATCCCCATCTAAT+AGG 0.373259 3.4:-83942306 None:intergenic
TTAGCAGCTTATTATTTCCT+AGG 0.379640 3.4:-83943302 None:intergenic
GTTTATGGAGCTTAGTTAAG+AGG 0.385365 3.4:-83942164 None:intergenic
ACTAGTCCTCACCGTCCATA+TGG 0.386128 3.4:+83943858 MS.gene013571:CDS
GTTAGCATCCGATGGCTTAT+GGG 0.389003 3.4:+83946994 MS.gene013571:CDS
ATGGGGATCAGTATCTTTGC+AGG 0.390272 3.4:+83942314 MS.gene013571:CDS
TTGCTTCTGTCCAGTTCCTC+AGG 0.392143 3.4:+83942430 MS.gene013571:CDS
TTTAAAGGCTTGAAATGAAA+GGG 0.400684 3.4:+83943238 MS.gene013571:intron
GTGAAAAGGATGCTACAAAA+AGG 0.413005 3.4:+83946737 MS.gene013571:intron
ATAGCTAAGACCTGAGGAAC+TGG 0.414366 3.4:-83942440 None:intergenic
GGGGAGGAGGAGGATGAATC+AGG 0.415467 3.4:+83943258 MS.gene013571:CDS
TGAAATGAAAGGGGAGGAGG+AGG 0.428058 3.4:+83943248 MS.gene013571:CDS
GATATTTATCAAGTAACTCT+TGG 0.438968 3.4:+83946950 MS.gene013571:CDS
ATCAAAAGAATCAGAGAAGC+AGG 0.445855 3.4:+83943906 MS.gene013571:CDS
GGACAGAAAAGTTCATTTCC+CGG 0.447424 3.4:+83946777 MS.gene013571:CDS
GCAGGGTCCACGTGAAGAAA+TGG 0.449478 3.4:+83942332 MS.gene013571:CDS
AAGAGGAATCTTTGTATATG+TGG 0.453079 3.4:-83942147 None:intergenic
GAGGCCTTGTTGCTCCCATA+TGG 0.455386 3.4:-83943873 None:intergenic
TTCCAACGGTGGCTAGGGCT+TGG 0.460560 3.4:-83947819 None:intergenic
TGTGTTTATGTATTTGGAAG+AGG 0.466639 3.4:-83942193 None:intergenic
CACAATTCCAACGGTGGCTA+GGG 0.467000 3.4:-83947824 None:intergenic
GCGGCCGTGTTTGATGGCCA+TGG 0.471142 3.4:+83942402 MS.gene013571:CDS
GCTTGAAATGAAAGGGGAGG+AGG 0.477022 3.4:+83943245 MS.gene013571:CDS
ATTACCAACGGTAGGATTTG+CGG 0.480678 3.4:+83946540 MS.gene013571:CDS
CCGTGTTTGATGGCCATGGA+GGG 0.482647 3.4:+83942406 MS.gene013571:CDS
ACACAATTCCAACGGTGGCT+AGG 0.491960 3.4:-83947825 None:intergenic
TCTCCAAGGTTTCTCTTTCG+CGG 0.496528 3.4:+83942383 MS.gene013571:CDS
ACAGCAACTGCCATATTCCT+AGG 0.507970 3.4:+83943285 MS.gene013571:CDS
CTTAGGCCAAATAGTCTCCA+AGG 0.519183 3.4:+83942369 MS.gene013571:CDS
GCTTATGGGATTACATGAGC+AGG 0.519531 3.4:+83947008 MS.gene013571:CDS
CTAGTCCTCACCGTCCATAT+GGG 0.520919 3.4:+83943859 MS.gene013571:CDS
GAATCAGAGAAGCAGGTGGA+TGG 0.523820 3.4:+83943913 MS.gene013571:CDS
AAGGAGCTCAGGAAGGAAGA+TGG 0.526606 3.4:+83946756 MS.gene013571:CDS
TGCTGTATCCCGTGCATTTG+GGG 0.527648 3.4:+83946569 MS.gene013571:CDS
GCATTATAATTGCCGATCTA+GGG 0.535217 3.4:+83947404 MS.gene013571:CDS
AGACTCTCCTCCTATTAGAT+GGG 0.543447 3.4:+83942296 MS.gene013571:CDS
TTTATAGTGTTAGCATCCGA+TGG 0.544491 3.4:+83946986 MS.gene013571:CDS
GTGCTTGCAGGAAGACAGAC+TGG 0.546345 3.4:+83947752 MS.gene013571:intron
GGAGAGTCTGTCAATGATGA+AGG 0.549099 3.4:-83942282 None:intergenic
CGGCCGCGAAAGAGAAACCT+TGG 0.549935 3.4:-83942386 None:intergenic
GTCCAAGCCCTAGCCACCGT+TGG 0.555090 3.4:+83947817 MS.gene013571:CDS
CAATGATGAAGGTGCATCAA+TGG 0.556018 3.4:-83942271 None:intergenic
ACAAAATACATACCCTAGAT+CGG 0.557827 3.4:-83947416 None:intergenic
ATCGCATGTCCCCAAATGCA+CGG 0.559501 3.4:-83946578 None:intergenic
CCCTCCATGGCCATCAAACA+CGG 0.563996 3.4:-83942406 None:intergenic
TGTACAGTTCAAAGATGACT+TGG 0.565147 3.4:+83946913 MS.gene013571:CDS
AATCAGAGAAGCAGGTGGAT+GGG 0.572153 3.4:+83943914 MS.gene013571:CDS
GTTTATGTATTTGGAAGAGG+TGG 0.576117 3.4:-83942190 None:intergenic
TGTTGAAGAAGCATTAAAGC+AGG 0.576690 3.4:+83943077 MS.gene013571:CDS
TCGCATGTCCCCAAATGCAC+GGG 0.578399 3.4:-83946577 None:intergenic
TACCAAAACGACTTGTGCAA+GGG 0.580364 3.4:-83947280 None:intergenic
GAGTGTCTTGAAGCTCTACA+AGG 0.580723 3.4:+83943021 MS.gene013571:CDS
TTACCAAAACGACTTGTGCA+AGG 0.581838 3.4:-83947281 None:intergenic
TTAAAGGCTTGAAATGAAAG+GGG 0.583830 3.4:+83943239 MS.gene013571:intron
TCATCTTCCATTTCTTCACG+TGG 0.584276 3.4:-83942339 None:intergenic
CTACAGGGATGAGTTATACA+AGG 0.587623 3.4:+83942999 MS.gene013571:intron
GGACAGAAGCAAACCCTCCA+TGG 0.588408 3.4:-83942419 None:intergenic
ATCTCCGCAAATCCTACCGT+TGG 0.588610 3.4:-83946544 None:intergenic
GAGTTACTTGATAAATATCA+GGG 0.596312 3.4:-83946946 None:intergenic
ACTGATCCCCATCTAATAGG+AGG 0.597752 3.4:-83942303 None:intergenic
GTCTTGAAGCTCTACAAGGT+GGG 0.604160 3.4:+83943025 MS.gene013571:CDS
CATGTAATCCCATAAGCCAT+CGG 0.609703 3.4:-83947002 None:intergenic
GCCGTGTTTGATGGCCATGG+AGG 0.611537 3.4:+83942405 MS.gene013571:CDS
AAGGCTTGAAATGAAAGGGG+AGG 0.613590 3.4:+83943242 MS.gene013571:intron
TGAAGGTGCATCAATGGCTA+TGG 0.614608 3.4:-83942265 None:intergenic
ACATATTGGTGACTCATCTG+TGG 0.614996 3.4:+83943329 MS.gene013571:CDS
TGGGGATCAGTATCTTTGCA+GGG 0.616882 3.4:+83942315 MS.gene013571:CDS
TTCTTTAGATTACCAACGGT+AGG 0.622788 3.4:+83946532 MS.gene013571:intron
CCTTGTTGCTCCCATATGGA+CGG 0.623217 3.4:-83943869 None:intergenic
GACTCTCCTCCTATTAGATG+GGG 0.625445 3.4:+83942297 MS.gene013571:CDS
TGGCTATGGCAGAACAGCAA+CGG 0.629952 3.4:-83942251 None:intergenic
CCGTCCATATGGGAGCAACA+AGG 0.639612 3.4:+83943869 MS.gene013571:CDS
CATTTGTTAAAGCTGACATG+AGG 0.639772 3.4:+83943100 MS.gene013571:CDS
TCTGCAGGACCAACGTACAC+AGG 0.646615 3.4:+83947372 MS.gene013571:intron
AGGGATCAACTACGAAAACA+TGG 0.647059 3.4:+83947142 MS.gene013571:CDS
TCCAATAGACACAATTCCAA+CGG 0.647966 3.4:-83947833 None:intergenic
TTGCTCCCATATGGACGGTG+AGG 0.659175 3.4:-83943864 None:intergenic
AAAAGAATCAGAGAAGCAGG+TGG 0.661475 3.4:+83943909 MS.gene013571:CDS
TGTCTTGAAGCTCTACAAGG+TGG 0.664593 3.4:+83943024 MS.gene013571:CDS
ACGAAAACATGGAAACACAC+AGG 0.687122 3.4:+83947153 MS.gene013571:CDS
AATAGACACAATTCCAACGG+TGG 0.712558 3.4:-83947830 None:intergenic
TGACATTATCCTGTGTACGT+TGG 0.736320 3.4:-83947381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGAAAATAAAATTC+TGG + chr3.4:83944141-83944160 MS.gene013571:intron 10.0%
!!! TTTAATACAATGTAATTTTT+TGG - chr3.4:83944849-83944868 None:intergenic 10.0%
!! AAATTTACAAAATCAATACA+AGG - chr3.4:83942544-83942563 None:intergenic 15.0%
!! ATTAATTAATTATGTGTGTT+TGG + chr3.4:83942496-83942515 MS.gene013571:intron 15.0%
!! ATTTAATAAAACTCATATTC+TGG + chr3.4:83947531-83947550 MS.gene013571:intron 15.0%
!! TTAATTAATTATGTGTGTTT+GGG + chr3.4:83942497-83942516 MS.gene013571:intron 15.0%
!! TTTGAATTTCATTGATATTT+AGG + chr3.4:83944666-83944685 MS.gene013571:intron 15.0%
!!! AATTAAAAATCTTTGGTTTA+GGG - chr3.4:83945897-83945916 None:intergenic 15.0%
!!! ATAATTAATCTGATGTTTTA+TGG + chr3.4:83944200-83944219 MS.gene013571:intron 15.0%
!!! CATCTCTTTTTTAATAATAT+TGG - chr3.4:83944443-83944462 None:intergenic 15.0%
!!! CTTTTTTAATAATATTGGAT+AGG - chr3.4:83944438-83944457 None:intergenic 15.0%
!!! GTGAAAAAATTTAATTTTGA+GGG + chr3.4:83946321-83946340 MS.gene013571:intron 15.0%
!!! TAATTAATCTGATGTTTTAT+GGG + chr3.4:83944201-83944220 MS.gene013571:intron 15.0%
!!! TCATTTTGAATAATTTGTTT+AGG + chr3.4:83944389-83944408 MS.gene013571:intron 15.0%
!!! TGTGAAAAAATTTAATTTTG+AGG + chr3.4:83946320-83946339 MS.gene013571:intron 15.0%
!!! TTAATCAATTTTATTCATGT+AGG + chr3.4:83943803-83943822 MS.gene013571:intron 15.0%
!!! TTTTTTTTTTCTTTTCACAA+AGG - chr3.4:83947499-83947518 None:intergenic 15.0%
!! AAACACAATCCTAATAAAAT+AGG + chr3.4:83944568-83944587 MS.gene013571:intron 20.0%
!! AAATTGAAAATTCAATGAGA+AGG - chr3.4:83945084-83945103 None:intergenic 20.0%
!! ATAAATCATACATTTGACTA+GGG + chr3.4:83943695-83943714 MS.gene013571:intron 20.0%
!! ATAAATTCCTTTATACTAGA+AGG - chr3.4:83946649-83946668 None:intergenic 20.0%
!! ATAACAACATAAATAGAATG+CGG + chr3.4:83944997-83945016 MS.gene013571:intron 20.0%
!! ATATAAAAAATGAAGGAACA+AGG - chr3.4:83943948-83943967 None:intergenic 20.0%
!! GAAATATATTGTTTCCAATA+AGG + chr3.4:83944287-83944306 MS.gene013571:intron 20.0%
!! GAATAACATGATAAATTAGT+AGG + chr3.4:83945652-83945671 MS.gene013571:intron 20.0%
!! GGTAATCAATTAAAAATCTT+TGG - chr3.4:83945904-83945923 None:intergenic 20.0%
!! TAACTTCAATTGTGATAAAT+TGG - chr3.4:83945849-83945868 None:intergenic 20.0%
!! TAATTAATTATGTGTGTTTG+GGG + chr3.4:83942498-83942517 MS.gene013571:intron 20.0%
!! TAGTTAAATGCTTATAACAT+AGG + chr3.4:83942656-83942675 MS.gene013571:intron 20.0%
!! TTCAAATTACACTTTATTGA+AGG + chr3.4:83944723-83944742 MS.gene013571:intron 20.0%
!!! AAAAATTTAATTTTGAGGGT+TGG + chr3.4:83946325-83946344 MS.gene013571:intron 20.0%
!!! AAAACCAATTTTGTATTCTT+AGG + chr3.4:83943444-83943463 MS.gene013571:intron 20.0%
!!! AAAGAGCATATAAAAAATGA+AGG - chr3.4:83943955-83943974 None:intergenic 20.0%
!!! AATTAATCTGATGTTTTATG+GGG + chr3.4:83944202-83944221 MS.gene013571:intron 20.0%
!!! AGACAGTATTTTGTTTTTAA+AGG + chr3.4:83943223-83943242 MS.gene013571:intron 20.0%
!!! AGATTTTTAATTGATTACCT+TGG + chr3.4:83945905-83945924 MS.gene013571:intron 20.0%
!!! ATAACAAATCTAGAATCATT+TGG - chr3.4:83943179-83943198 None:intergenic 20.0%
!!! CAATTAAAAATCTTTGGTTT+AGG - chr3.4:83945898-83945917 None:intergenic 20.0%
!!! TAAGATTCATATTAGTTTCT+TGG + chr3.4:83945551-83945570 MS.gene013571:intron 20.0%
!!! TGAAGAAAATTATGTTGATT+AGG + chr3.4:83945109-83945128 MS.gene013571:intron 20.0%
!!! TGATTTCATGATTTTGTTTT+GGG - chr3.4:83944613-83944632 None:intergenic 20.0%
!!! TTCAAAAAATGGAAAAGTAT+CGG - chr3.4:83943662-83943681 None:intergenic 20.0%
!!! TTGATTTCATGATTTTGTTT+TGG - chr3.4:83944614-83944633 None:intergenic 20.0%
!!! TTTAAGCTTATTTTCATAAG+TGG - chr3.4:83942721-83942740 None:intergenic 20.0%
! AAATAACAAAAACAGTTGAG+GGG + chr3.4:83944468-83944487 MS.gene013571:intron 25.0%
! AAATTCACACGATGATTATA+TGG + chr3.4:83942939-83942958 MS.gene013571:intron 25.0%
! AAGGAATGATTTAGAGATTA+AGG - chr3.4:83946630-83946649 None:intergenic 25.0%
! AATAAAACCACAAATGTGTT+TGG - chr3.4:83942876-83942895 None:intergenic 25.0%
! AATCATTCCTTCTAGTATAA+AGG + chr3.4:83946639-83946658 MS.gene013571:intron 25.0%
! ACTACCTAAGAATACAAAAT+TGG - chr3.4:83943451-83943470 None:intergenic 25.0%
! AGAAATAACAAAAACAGTTG+AGG + chr3.4:83944466-83944485 MS.gene013571:intron 25.0%
! AGAGTTACTTGATAAATATC+AGG - chr3.4:83946950-83946969 None:intergenic 25.0%
! ATCATTCAACTAGAATATCT+AGG + chr3.4:83943753-83943772 MS.gene013571:intron 25.0%
! CATAAATCATACATTTGACT+AGG + chr3.4:83943694-83943713 MS.gene013571:intron 25.0%
! CGTACTTTCATTATATAGAA+CGG - chr3.4:83946475-83946494 None:intergenic 25.0%
! CTAATATCCAACTACAAATT+AGG + chr3.4:83944636-83944655 MS.gene013571:intron 25.0%
! CTACTTACTTAGTTACATAT+CGG + chr3.4:83943596-83943615 MS.gene013571:intron 25.0%
! CTTATTATTTCCTAGGAATA+TGG - chr3.4:83943298-83943317 None:intergenic 25.0%
! GAAATAACAAAAACAGTTGA+GGG + chr3.4:83944467-83944486 MS.gene013571:intron 25.0%
! GAGTTACTTGATAAATATCA+GGG - chr3.4:83946949-83946968 None:intergenic 25.0%
! GATATTTATCAAGTAACTCT+TGG + chr3.4:83946950-83946969 MS.gene013571:CDS 25.0%
! GTCAAAAAGACATCAATTTA+TGG + chr3.4:83944328-83944347 MS.gene013571:intron 25.0%
! GTTGTAGATACTTCAAAAAA+TGG - chr3.4:83943673-83943692 None:intergenic 25.0%
! TACTTACTTAGTTACATATC+GGG + chr3.4:83943597-83943616 MS.gene013571:intron 25.0%
! TCAACATGTTTCATGTAATT+TGG - chr3.4:83945247-83945266 None:intergenic 25.0%
! TCATTCAACTAGAATATCTA+GGG + chr3.4:83943754-83943773 MS.gene013571:intron 25.0%
! TCTGTTTGTGTTTATGTATT+TGG - chr3.4:83942202-83942221 None:intergenic 25.0%
! TGAATCCTACTAATTTATCA+AGG - chr3.4:83945497-83945516 None:intergenic 25.0%
! TGCAAAAAAAATATATGAGG+AGG + chr3.4:83946269-83946288 MS.gene013571:intron 25.0%
! TGCCAAAAACTTTATATTTG+AGG + chr3.4:83947178-83947197 MS.gene013571:intron 25.0%
! TGGAAGATGATATTATTCTT+AGG + chr3.4:83942352-83942371 MS.gene013571:CDS 25.0%
! TGGTGCAAAAAAAATATATG+AGG + chr3.4:83946266-83946285 MS.gene013571:intron 25.0%
! TGTTTCTTTATTATGAAAGC+CGG + chr3.4:83942609-83942628 MS.gene013571:intron 25.0%
! TTGTCATGTATATATGACTT+TGG + chr3.4:83947435-83947454 MS.gene013571:intron 25.0%
! TTGTTTAAATCCTAAACCTT+TGG - chr3.4:83947608-83947627 None:intergenic 25.0%
! TTTAAAGGCTTGAAATGAAA+GGG + chr3.4:83943238-83943257 MS.gene013571:intron 25.0%
!! ATATCACTAGAGTATTAATG+TGG + chr3.4:83947581-83947600 MS.gene013571:intron 25.0%
!! GAAAATTATGTTGATTAGGT+TGG + chr3.4:83945113-83945132 MS.gene013571:intron 25.0%
!! GGTTTAATGAATTTGGTAAT+TGG - chr3.4:83945048-83945067 None:intergenic 25.0%
!! TGCCTCAAATATAAAGTTTT+TGG - chr3.4:83947183-83947202 None:intergenic 25.0%
!! TTGAAGGTCATTCTTTTAAT+TGG + chr3.4:83944739-83944758 MS.gene013571:intron 25.0%
!!! AAACACATTTGTGGTTTTAT+TGG + chr3.4:83942875-83942894 MS.gene013571:intron 25.0%
!!! ATGTTACTTTGTTTGAATCA+TGG - chr3.4:83945601-83945620 None:intergenic 25.0%
!!! GACATTGTTTTACTATAATG+AGG - chr3.4:83945427-83945446 None:intergenic 25.0%
!!! TCAAAAAATGGAAAAGTATC+GGG - chr3.4:83943661-83943680 None:intergenic 25.0%
!!! TGAAGGTCATTCTTTTAATT+GGG + chr3.4:83944740-83944759 MS.gene013571:intron 25.0%
!!! TTGAGTTTGGTCAATTTTTT+TGG + chr3.4:83943973-83943992 MS.gene013571:intron 25.0%
!!! TTGTTTTACTATAATGAGGA+TGG - chr3.4:83945423-83945442 None:intergenic 25.0%
!!! TTTTAAAGGCTTGAAATGAA+AGG + chr3.4:83943237-83943256 MS.gene013571:intron 25.0%
!!! TTTTATATGCTCTTTGAGTT+TGG + chr3.4:83943960-83943979 MS.gene013571:intron 25.0%
!!! TTTTTAATTGATTACCTTGG+TGG + chr3.4:83945908-83945927 MS.gene013571:intron 25.0%
!!! TTTTTGCTTTTGTTTGAGTT+TGG - chr3.4:83944500-83944519 None:intergenic 25.0%
!!! TTTTTGGTTTTAAAGAGTCT+AGG + chr3.4:83943989-83944008 MS.gene013571:intron 25.0%
AAAATCACACTTACAAAGTG+TGG + chr3.4:83944016-83944035 MS.gene013571:intron 30.0%
AAGAGGAATCTTTGTATATG+TGG - chr3.4:83942150-83942169 None:intergenic 30.0%
AAGCTGCTAATTTCACATAT+TGG + chr3.4:83943315-83943334 MS.gene013571:CDS 30.0%
AATAAGCTTAAAACAGCTCA+TGG + chr3.4:83942729-83942748 MS.gene013571:intron 30.0%
ACAAAATACATACCCTAGAT+CGG - chr3.4:83947419-83947438 None:intergenic 30.0%
ACATACATAAGATTACCTAC+CGG - chr3.4:83946799-83946818 None:intergenic 30.0%
ACCAAATTCATTAAACCAAG+AGG + chr3.4:83945051-83945070 MS.gene013571:intron 30.0%
AGAAGCCTTGATAAATTAGT+AGG + chr3.4:83945489-83945508 MS.gene013571:intron 30.0%
ATGACATTTGTGTCTTTAGT+TGG + chr3.4:83943498-83943517 MS.gene013571:intron 30.0%
ATTATGAGTTGTGACAACTT+AGG + chr3.4:83944171-83944190 MS.gene013571:intron 30.0%
ATTGCAACTGATATTTGAGA+TGG + chr3.4:83946022-83946041 MS.gene013571:intron 30.0%
CAGCAATTACGTTCTATAAT+TGG + chr3.4:83947462-83947481 MS.gene013571:intron 30.0%
CATTCAACTAGAATATCTAG+GGG + chr3.4:83943755-83943774 MS.gene013571:intron 30.0%
CCAAATTCATTAAACCAAGA+GGG + chr3.4:83945052-83945071 MS.gene013571:intron 30.0%
CCAAATTTACACTAAGCTTT+AGG - chr3.4:83942851-83942870 None:intergenic 30.0%
CCTAAAGCTTAGTGTAAATT+TGG + chr3.4:83942848-83942867 MS.gene013571:intron 30.0%
CCTAATAAAATAGGACAGTT+CGG + chr3.4:83944577-83944596 MS.gene013571:intron 30.0%
CTAAAGACACAAATGTCATT+TGG - chr3.4:83943497-83943516 None:intergenic 30.0%
CTTATCCAAACAAATTACAC+CGG - chr3.4:83942631-83942650 None:intergenic 30.0%
GAACAAGCAGAATATTATTG+CGG - chr3.4:83947238-83947257 None:intergenic 30.0%
GACAACGTTCATTTCAAAAA+TGG - chr3.4:83946451-83946470 None:intergenic 30.0%
GATTCAAACAAAGTAACATG+TGG + chr3.4:83945602-83945621 MS.gene013571:intron 30.0%
GTTGATTGAATATGCAATTG+AGG - chr3.4:83945827-83945846 None:intergenic 30.0%
TAAAACTCATATTCTGGTCA+TGG + chr3.4:83947537-83947556 MS.gene013571:intron 30.0%
TAAGCTAACAAACATGAGAA+AGG - chr3.4:83942476-83942495 None:intergenic 30.0%
TAATTTGGAAGAGTTACCAT+CGG - chr3.4:83945232-83945251 None:intergenic 30.0%
TCAGGTGATAGGAAATTAAA+TGG + chr3.4:83944366-83944385 MS.gene013571:intron 30.0%
TCTTTATATTGAGAGAGATG+TGG - chr3.4:83944976-83944995 None:intergenic 30.0%
TGTGTTTATGTATTTGGAAG+AGG - chr3.4:83942196-83942215 None:intergenic 30.0%
TTAAAGGCTTGAAATGAAAG+GGG + chr3.4:83943239-83943258 MS.gene013571:intron 30.0%
TTAGCAGCTTATTATTTCCT+AGG - chr3.4:83943305-83943324 None:intergenic 30.0%
TTATCTCTTGATCATATGGA+TGG + chr3.4:83945175-83945194 MS.gene013571:intron 30.0%
TTTACTATAATGAGGATGGA+TGG - chr3.4:83945419-83945438 None:intergenic 30.0%
! AACTGATATTTGAGATGGAA+AGG + chr3.4:83946027-83946046 MS.gene013571:intron 30.0%
! AATTGATGTCTTTTTGACAG+TGG - chr3.4:83944326-83944345 None:intergenic 30.0%
! ACTGATATTTGAGATGGAAA+GGG + chr3.4:83946028-83946047 MS.gene013571:intron 30.0%
! ATGGATTACTAAAACTGTAC+AGG - chr3.4:83947342-83947361 None:intergenic 30.0%
! CCTTTTCTTTAGATTACCAA+CGG + chr3.4:83946528-83946547 MS.gene013571:intron 30.0%
! GACACGTTTTATGTATTAAC+TGG - chr3.4:83943142-83943161 None:intergenic 30.0%
! GCATTTTGAACAAATTGAAC+AGG + chr3.4:83945690-83945709 MS.gene013571:intron 30.0%
! TATAATGAAAGTACGTTGCA+TGG + chr3.4:83946480-83946499 MS.gene013571:intron 30.0%
! TATCAGACATGTATCGATAT+TGG + chr3.4:83943623-83943642 MS.gene013571:intron 30.0%
! TTCAAAGTGCAAAAAGCATA+GGG + chr3.4:83946292-83946311 MS.gene013571:intron 30.0%
!! CAAAAAATGGAAAAGTATCG+GGG - chr3.4:83943660-83943679 None:intergenic 30.0%
!! CTTAAAGTTTGTTATTGTGC+TGG - chr3.4:83945336-83945355 None:intergenic 30.0%
!!! AGGATTGTGTTTTTAGAGAT+AGG - chr3.4:83944560-83944579 None:intergenic 30.0%
!!! ATCTAACACTCATGGTTTTT+TGG - chr3.4:83945749-83945768 None:intergenic 30.0%
!!! ATGGTTTTTTGGGTTGTAAA+TGG - chr3.4:83945738-83945757 None:intergenic 30.0%
!!! TCTAACACTCATGGTTTTTT+GGG - chr3.4:83945748-83945767 None:intergenic 30.0%
!!! TCTTTTGATTTCTTGAAGAG+AGG - chr3.4:83943895-83943914 None:intergenic 30.0%
!!! TGGTTTAGGGTTTTGAAATT+TGG - chr3.4:83945884-83945903 None:intergenic 30.0%
AACAATCAAACCACAACACT+TGG - chr3.4:83944258-83944277 None:intergenic 35.0%
AACTAAAACGTGACTGTAGA+TGG + chr3.4:83946051-83946070 MS.gene013571:intron 35.0%
AAGTGACAATCTAACACTCA+TGG - chr3.4:83945757-83945776 None:intergenic 35.0%
AGATTGTTTGGGAAAGCTTA+TGG - chr3.4:83942777-83942796 None:intergenic 35.0%
AGCACTCAATATAAAACGCA+TGG - chr3.4:83947737-83947756 None:intergenic 35.0%
AGCATTATAATTGCCGATCT+AGG + chr3.4:83947403-83947422 MS.gene013571:CDS 35.0%
ATCAAAAGAATCAGAGAAGC+AGG + chr3.4:83943906-83943925 MS.gene013571:CDS 35.0%
ATGTGTAAATGAGTGAAGTG+AGG + chr3.4:83946228-83946247 MS.gene013571:intron 35.0%
ATTGTGAAGGTAATTCTCTG+CGG - chr3.4:83947084-83947103 None:intergenic 35.0%
CACAACACAGACATATCATT+AGG + chr3.4:83945800-83945819 MS.gene013571:intron 35.0%
CACTTGGTAAAACTAGGAAA+TGG - chr3.4:83944242-83944261 None:intergenic 35.0%
CATACATAAGATTACCTACC+GGG - chr3.4:83946798-83946817 None:intergenic 35.0%
CCCTCTTGGTTTAATGAATT+TGG - chr3.4:83945055-83945074 None:intergenic 35.0%
CGCATTATCTCTTGATCATA+TGG + chr3.4:83945171-83945190 MS.gene013571:intron 35.0%
CTGACATGAGGTTGTTAAAA+TGG + chr3.4:83943112-83943131 MS.gene013571:CDS 35.0%
CTTAGGTAGTAATGTATCGA+AGG + chr3.4:83943461-83943480 MS.gene013571:intron 35.0%
GAACACTAGTGAGATTGTTT+GGG - chr3.4:83942788-83942807 None:intergenic 35.0%
GAATTGTGTCTATTGGAATC+TGG + chr3.4:83947839-83947858 MS.gene013571:CDS 35.0%
GAGAACTAATCCTTACTCAT+GGG + chr3.4:83945265-83945284 MS.gene013571:intron 35.0%
GCAAAAGGTAGATAACACTT+AGG - chr3.4:83946715-83946734 None:intergenic 35.0%
GCATTATAATTGCCGATCTA+GGG + chr3.4:83947404-83947423 MS.gene013571:CDS 35.0%
GGACATTTGTAAAGAATGGA+TGG - chr3.4:83944894-83944913 None:intergenic 35.0%
GGTAGATTCAATGTCTTTGA+AGG + chr3.4:83945929-83945948 MS.gene013571:intron 35.0%
GTAACTGATTGGAACCTTAT+TGG - chr3.4:83944304-83944323 None:intergenic 35.0%
GTCTGTGTTGTGAATTTGAT+TGG - chr3.4:83945792-83945811 None:intergenic 35.0%
GTGAAAAGGATGCTACAAAA+AGG + chr3.4:83946737-83946756 MS.gene013571:intron 35.0%
GTTTATGGAGCTTAGTTAAG+AGG - chr3.4:83942167-83942186 None:intergenic 35.0%
GTTTATGTATTTGGAAGAGG+TGG - chr3.4:83942193-83942212 None:intergenic 35.0%
TAGGGGACATTTGTAAAGAA+TGG - chr3.4:83944898-83944917 None:intergenic 35.0%
TCCAATAGACACAATTCCAA+CGG - chr3.4:83947836-83947855 None:intergenic 35.0%
TGAACACTAGTGAGATTGTT+TGG - chr3.4:83942789-83942808 None:intergenic 35.0%
TGAGAACTAATCCTTACTCA+TGG + chr3.4:83945264-83945283 MS.gene013571:intron 35.0%
TGTACAGTTCAAAGATGACT+TGG + chr3.4:83946913-83946932 MS.gene013571:CDS 35.0%
TGTGTAAATGAGTGAAGTGA+GGG + chr3.4:83946229-83946248 MS.gene013571:intron 35.0%
TTAATGTGGTCCAAAGGTTT+AGG + chr3.4:83947595-83947614 MS.gene013571:intron 35.0%
TTAATTTCCTATCACCTGAC+AGG - chr3.4:83944365-83944384 None:intergenic 35.0%
TTCTTTAGATTACCAACGGT+AGG + chr3.4:83946532-83946551 MS.gene013571:intron 35.0%
TTGAATATAGCTAAGACCTG+AGG - chr3.4:83942449-83942468 None:intergenic 35.0%
TTTATAGTGTTAGCATCCGA+TGG + chr3.4:83946986-83947005 MS.gene013571:CDS 35.0%
! AAGGGTAGCAGAAATGATTT+TGG - chr3.4:83947049-83947068 None:intergenic 35.0%
! AGAGTATTAATGTGGTCCAA+AGG + chr3.4:83947589-83947608 MS.gene013571:intron 35.0%
! AGGGTAGCAGAAATGATTTT+GGG - chr3.4:83947048-83947067 None:intergenic 35.0%
! AGGGTTTTCTAAGTTAAGAG+AGG + chr3.4:83946184-83946203 MS.gene013571:intron 35.0%
! ATCGTGTGAATTTGCTCTTA+TGG - chr3.4:83942932-83942951 None:intergenic 35.0%
! ATGAGCACCTAATTTGTAGT+TGG - chr3.4:83944646-83944665 None:intergenic 35.0%
! CATTGTGCATGTTTTATGAG+AGG - chr3.4:83943382-83943401 None:intergenic 35.0%
! CATTTGTTAAAGCTGACATG+AGG + chr3.4:83943100-83943119 MS.gene013571:CDS 35.0%
! CCGAACTGTCCTATTTTATT+AGG - chr3.4:83944580-83944599 None:intergenic 35.0%
! GGATGGTATGTTGACATTTT+AGG + chr3.4:83945192-83945211 MS.gene013571:intron 35.0%
! GTTCAAAGTGCAAAAAGCAT+AGG + chr3.4:83946291-83946310 MS.gene013571:intron 35.0%
! GTTTTATATTGAGTGCTTGC+AGG + chr3.4:83947740-83947759 MS.gene013571:intron 35.0%
! TCAAAGTGCAAAAAGCATAG+GGG + chr3.4:83946293-83946312 MS.gene013571:intron 35.0%
! TTTGGAACCAAACACATTTG+TGG + chr3.4:83942866-83942885 MS.gene013571:intron 35.0%
! TTTTGACAGTGGTAACTGAT+TGG - chr3.4:83944315-83944334 None:intergenic 35.0%
!! ACTAAGCTTTAGGACATGTT+TGG - chr3.4:83942841-83942860 None:intergenic 35.0%
!! ATGTAGGTTTTATGCAGATC+TGG + chr3.4:83943819-83943838 MS.gene013571:intron 35.0%
!! CCGTTGGTAATCTAAAGAAA+AGG - chr3.4:83946531-83946550 None:intergenic 35.0%
!! GGTCATTCTTTTAATTGGGT+TGG + chr3.4:83944744-83944763 MS.gene013571:intron 35.0%
!! GTTTTATGAGAGGCACAATA+AGG - chr3.4:83943372-83943391 None:intergenic 35.0%
!! TGTTGAAGAAGCATTAAAGC+AGG + chr3.4:83943077-83943096 MS.gene013571:CDS 35.0%
!! TTCTTTTCACAAAGGCATAG+CGG - chr3.4:83947491-83947510 None:intergenic 35.0%
!!! CACTTAGGAAGCATTTTAAC+AGG - chr3.4:83946700-83946719 None:intergenic 35.0%
!!! TTCTGCTACCCTTCTTTTTT+TGG + chr3.4:83947056-83947075 MS.gene013571:intron 35.0%
!!! TTGGTTTTGTGACACATTCA+TGG - chr3.4:83943432-83943451 None:intergenic 35.0%
AAAAGAATCAGAGAAGCAGG+TGG + chr3.4:83943909-83943928 MS.gene013571:CDS 40.0%
AAGTCAGCTTAGACGGTAAA+AGG - chr3.4:83944099-83944118 None:intergenic 40.0%
AATAGACACAATTCCAACGG+TGG - chr3.4:83947833-83947852 None:intergenic 40.0%
ACCGTTGGAATTGTGTCTAT+TGG + chr3.4:83947832-83947851 MS.gene013571:CDS 40.0%
ACGAAAACATGGAAACACAC+AGG + chr3.4:83947153-83947172 MS.gene013571:CDS 40.0%
ACGGAAAAATAAGGTGGAGA+CGG + chr3.4:83945990-83946009 MS.gene013571:intron 40.0%
ACTAATCCTTACTCATGGGA+TGG + chr3.4:83945269-83945288 MS.gene013571:intron 40.0%
ACTTACAAAGTGTGGAGAAG+AGG + chr3.4:83944024-83944043 MS.gene013571:intron 40.0%
AGAAAAGTTCATTTCCCGGT+AGG + chr3.4:83946781-83946800 MS.gene013571:intron 40.0%
AGACATTGAATCTACCACCA+AGG - chr3.4:83945925-83945944 None:intergenic 40.0%
AGACTCTCCTCCTATTAGAT+GGG + chr3.4:83942296-83942315 MS.gene013571:CDS 40.0%
AGAGTGAAGATGGAATGGAT+TGG + chr3.4:83946090-83946109 MS.gene013571:intron 40.0%
AGGGATCAACTACGAAAACA+TGG + chr3.4:83947142-83947161 MS.gene013571:CDS 40.0%
AGTTGTGACAACTTAGGATG+TGG + chr3.4:83944177-83944196 MS.gene013571:intron 40.0%
ATGAGGATGGATGGTAAGAA+AGG - chr3.4:83945410-83945429 None:intergenic 40.0%
ATGGATGGTAAGAAAGGAGT+AGG - chr3.4:83945404-83945423 None:intergenic 40.0%
ATTACCAACGGTAGGATTTG+CGG + chr3.4:83946540-83946559 MS.gene013571:CDS 40.0%
CAAGGATAGCAAGATTGTGA+AGG - chr3.4:83947097-83947116 None:intergenic 40.0%
CATGTAATCCCATAAGCCAT+CGG - chr3.4:83947005-83947024 None:intergenic 40.0%
CCACAACACTTGGTAAAACT+AGG - chr3.4:83944248-83944267 None:intergenic 40.0%
CTACAGGGATGAGTTATACA+AGG + chr3.4:83942999-83943018 MS.gene013571:intron 40.0%
CTGCGGAACCAAAAAAAGAA+GGG - chr3.4:83947067-83947086 None:intergenic 40.0%
CTTACAAAGTGTGGAGAAGA+GGG + chr3.4:83944025-83944044 MS.gene013571:intron 40.0%
GAATTACCATCCCATGAGTA+AGG - chr3.4:83945278-83945297 None:intergenic 40.0%
GAGAAACCTTGGAGACTATT+TGG - chr3.4:83942378-83942397 None:intergenic 40.0%
GATACTGATCCCCATCTAAT+AGG - chr3.4:83942309-83942328 None:intergenic 40.0%
GGACAGAAAAGTTCATTTCC+CGG + chr3.4:83946777-83946796 MS.gene013571:CDS 40.0%
GTATAACTCATCCCTGTAGT+TGG - chr3.4:83942998-83943017 None:intergenic 40.0%
GTCATCTTTGAACTGTACAC+TGG - chr3.4:83946912-83946931 None:intergenic 40.0%
GTCCTCTTTGTAGATATGCT+CGG + chr3.4:83945148-83945167 MS.gene013571:intron 40.0%
TACCAAAACGACTTGTGCAA+GGG - chr3.4:83947283-83947302 None:intergenic 40.0%
TCATCTTCCATTTCTTCACG+TGG - chr3.4:83942342-83942361 None:intergenic 40.0%
TCCATTATGATACACTCTGC+AGG + chr3.4:83947357-83947376 MS.gene013571:intron 40.0%
TCCTGCAGAGTGTATCATAA+TGG - chr3.4:83947361-83947380 None:intergenic 40.0%
TCTGCGGAACCAAAAAAAGA+AGG - chr3.4:83947068-83947087 None:intergenic 40.0%
TGACATTATCCTGTGTACGT+TGG - chr3.4:83947384-83947403 None:intergenic 40.0%
TGTAGGACGGAAAAATAAGG+TGG + chr3.4:83945984-83946003 MS.gene013571:intron 40.0%
TTACCAAAACGACTTGTGCA+AGG - chr3.4:83947284-83947303 None:intergenic 40.0%
! ACATATTGGTGACTCATCTG+TGG + chr3.4:83943329-83943348 MS.gene013571:CDS 40.0%
! AGACGCAGTTTCTTTTGTGA+GGG + chr3.4:83947123-83947142 MS.gene013571:CDS 40.0%
! CAATGATGAAGGTGCATCAA+TGG - chr3.4:83942274-83942293 None:intergenic 40.0%
! GAGTGAAGATGGAATGGATT+GGG + chr3.4:83946091-83946110 MS.gene013571:intron 40.0%
! GGCTTTTGAATATCCCTTTG+TGG + chr3.4:83945950-83945969 MS.gene013571:intron 40.0%
! GGGTAGCAGAAATGATTTTG+GGG - chr3.4:83947047-83947066 None:intergenic 40.0%
! GTATCGATATTGGATAGCGT+CGG + chr3.4:83943633-83943652 MS.gene013571:intron 40.0%
! TATGAGAGGCACAATAAGGA+TGG - chr3.4:83943368-83943387 None:intergenic 40.0%
! TCTACCTTTTGCGTGTGAAA+AGG + chr3.4:83946723-83946742 MS.gene013571:intron 40.0%
! TTACCGTCTAAGCTGACTTT+CGG + chr3.4:83944100-83944119 MS.gene013571:intron 40.0%
!! GAAAGCCGGTGTAATTTGTT+TGG + chr3.4:83942623-83942642 MS.gene013571:intron 40.0%
!! GCTTTAGGACATGTTTGGAT+TGG - chr3.4:83942836-83942855 None:intergenic 40.0%
!! GTTATTGTGCTGGTTACTGT+AGG - chr3.4:83945326-83945345 None:intergenic 40.0%
!! TGAGGACTAGTTAGCAATTC+TGG - chr3.4:83943849-83943868 None:intergenic 40.0%
!! TGTTGATTAGGTTGGCAACT+TGG + chr3.4:83945121-83945140 MS.gene013571:intron 40.0%
!!! CCTAGTTTTACCAAGTGTTG+TGG + chr3.4:83944245-83944264 MS.gene013571:intron 40.0%
AACGTGACTGTAGATGGTAG+TGG + chr3.4:83946057-83946076 MS.gene013571:intron 45.0%
AAGGCTTGAAATGAAAGGGG+AGG + chr3.4:83943242-83943261 MS.gene013571:intron 45.0%
AATCAGAGAAGCAGGTGGAT+GGG + chr3.4:83943914-83943933 MS.gene013571:CDS 45.0%
ACAGCAACTGCCATATTCCT+AGG + chr3.4:83943285-83943304 MS.gene013571:CDS 45.0%
ACTGATCCCCATCTAATAGG+AGG - chr3.4:83942306-83942325 None:intergenic 45.0%
AGTGTGGAGAAGAGGGTTAT+TGG + chr3.4:83944032-83944051 MS.gene013571:intron 45.0%
ATAGCTAAGACCTGAGGAAC+TGG - chr3.4:83942443-83942462 None:intergenic 45.0%
ATGGGGATCAGTATCTTTGC+AGG + chr3.4:83942314-83942333 MS.gene013571:CDS 45.0%
ATGTGCCAAATGCCAACTAC+AGG + chr3.4:83942983-83943002 MS.gene013571:intron 45.0%
ATTGCTGTATCCCGTGCATT+TGG + chr3.4:83946567-83946586 MS.gene013571:CDS 45.0%
CAGACTCTCCTCCTATTAGA+TGG + chr3.4:83942295-83942314 MS.gene013571:CDS 45.0%
CGGAGACATTTGATGTGTTG+GGG - chr3.4:83944073-83944092 None:intergenic 45.0%
CGGTGTAGGACGGAAAAATA+AGG + chr3.4:83945981-83946000 MS.gene013571:intron 45.0%
CTACAAAAAGGAGCTCAGGA+AGG + chr3.4:83946749-83946768 MS.gene013571:CDS 45.0%
CTATCACCTGACAGGCTAAA+GGG - chr3.4:83944357-83944376 None:intergenic 45.0%
CTTAGGCCAAATAGTCTCCA+AGG + chr3.4:83942369-83942388 MS.gene013571:CDS 45.0%
CTTTACAAATGTCCCCTACG+AGG + chr3.4:83944900-83944919 MS.gene013571:intron 45.0%
GAAAAATAAGGTGGAGACGG+TGG + chr3.4:83945993-83946012 MS.gene013571:intron 45.0%
GAAGAGTTACCATCGGATTC+GGG - chr3.4:83945225-83945244 None:intergenic 45.0%
GACTCTCCTCCTATTAGATG+GGG + chr3.4:83942297-83942316 MS.gene013571:CDS 45.0%
GAGTGTCTTGAAGCTCTACA+AGG + chr3.4:83943021-83943040 MS.gene013571:CDS 45.0%
GATGCTACAAAAAGGAGCTC+AGG + chr3.4:83946745-83946764 MS.gene013571:CDS 45.0%
GCGGAGACATTTGATGTGTT+GGG - chr3.4:83944074-83944093 None:intergenic 45.0%
GCTGGTTACTGTAGGAGTTA+TGG - chr3.4:83945318-83945337 None:intergenic 45.0%
GCTTAGACGGTAAAAGGTTG+CGG - chr3.4:83944093-83944112 None:intergenic 45.0%
GCTTATGGGATTACATGAGC+AGG + chr3.4:83947008-83947027 MS.gene013571:CDS 45.0%
GGAAGAGTTACCATCGGATT+CGG - chr3.4:83945226-83945245 None:intergenic 45.0%
GGAGAGTCTGTCAATGATGA+AGG - chr3.4:83942285-83942304 None:intergenic 45.0%
GTAAATGAGTGAAGTGAGGG+TGG + chr3.4:83946232-83946251 MS.gene013571:intron 45.0%
GTCTTGAAGCTCTACAAGGT+GGG + chr3.4:83943025-83943044 MS.gene013571:CDS 45.0%
GTGTGGAGAAGAGGGTTATT+GGG + chr3.4:83944033-83944052 MS.gene013571:intron 45.0%
GTTAGCATCCGATGGCTTAT+GGG + chr3.4:83946994-83947013 MS.gene013571:CDS 45.0%
TCAGAACATGCAACCTCGTA+GGG - chr3.4:83944916-83944935 None:intergenic 45.0%
TCATCCCTGTAGTTGGCATT+TGG - chr3.4:83942991-83943010 None:intergenic 45.0%
TCTCCAAGGTTTCTCTTTCG+CGG + chr3.4:83942383-83942402 MS.gene013571:CDS 45.0%
TGAGAAGGATTTGTCCCTCT+TGG - chr3.4:83945069-83945088 None:intergenic 45.0%
TGCGGAGACATTTGATGTGT+TGG - chr3.4:83944075-83944094 None:intergenic 45.0%
TGGGGATCAGTATCTTTGCA+GGG + chr3.4:83942315-83942334 MS.gene013571:CDS 45.0%
TGTCTTGAAGCTCTACAAGG+TGG + chr3.4:83943024-83943043 MS.gene013571:CDS 45.0%
TGTGCCAAATGCCAACTACA+GGG + chr3.4:83942984-83943003 MS.gene013571:intron 45.0%
TGTGGAGAAGAGGGTTATTG+GGG + chr3.4:83944034-83944053 MS.gene013571:intron 45.0%
TGTTAGCATCCGATGGCTTA+TGG + chr3.4:83946993-83947012 MS.gene013571:CDS 45.0%
TTCAGAACATGCAACCTCGT+AGG - chr3.4:83944917-83944936 None:intergenic 45.0%
TTGCTGTATCCCGTGCATTT+GGG + chr3.4:83946568-83946587 MS.gene013571:CDS 45.0%
! AATTTTGAACCTCCTGACCC+TGG - chr3.4:83944791-83944810 None:intergenic 45.0%
! ATCCCTTGCACAAGTCGTTT+TGG + chr3.4:83947278-83947297 MS.gene013571:CDS 45.0%
! ATTTTGAACCTCCTGACCCT+GGG - chr3.4:83944790-83944809 None:intergenic 45.0%
! CAGACGCAGTTTCTTTTGTG+AGG + chr3.4:83947122-83947141 MS.gene013571:CDS 45.0%
! GCATCCTTTTCACACGCAAA+AGG - chr3.4:83946730-83946749 None:intergenic 45.0%
! GTGACATTTTGTTGCTGCAG+TGG - chr3.4:83947787-83947806 None:intergenic 45.0%
! TACCGTCTAAGCTGACTTTC+GGG + chr3.4:83944101-83944120 MS.gene013571:intron 45.0%
! TGAAGGTGCATCAATGGCTA+TGG - chr3.4:83942268-83942287 None:intergenic 45.0%
! TGGAAGAGGTGGAGTGTTTA+TGG - chr3.4:83942182-83942201 None:intergenic 45.0%
!! ATTAGGTTGGCAACTTGGCA+TGG + chr3.4:83945126-83945145 MS.gene013571:intron 45.0%
!! GACTGTAGATGGTAGTGGAT+AGG + chr3.4:83946062-83946081 MS.gene013571:intron 45.0%
!! TGAAGATGGAATGGATTGGG+TGG + chr3.4:83946094-83946113 MS.gene013571:intron 45.0%
!! TTTAATTGGGTTGGCAGCAG+TGG + chr3.4:83944753-83944772 MS.gene013571:intron 45.0%
AAATAAGGTGGAGACGGTGG+TGG + chr3.4:83945996-83946015 MS.gene013571:intron 50.0%
AAGGAGCTCAGGAAGGAAGA+TGG + chr3.4:83946756-83946775 MS.gene013571:CDS 50.0%
ACACAATTCCAACGGTGGCT+AGG - chr3.4:83947828-83947847 None:intergenic 50.0%
ACATTTGATGTGTTGGGGCG+TGG - chr3.4:83944068-83944087 None:intergenic 50.0%
ACTAGTCCTCACCGTCCATA+TGG + chr3.4:83943858-83943877 MS.gene013571:CDS 50.0%
ATAGGTCGCGAGAGTGAAGA+TGG + chr3.4:83946080-83946099 MS.gene013571:intron 50.0%
ATCCCTTTGTGGTTGCACGA+CGG + chr3.4:83945961-83945980 MS.gene013571:intron 50.0%
ATCGCATGTCCCCAAATGCA+CGG - chr3.4:83946581-83946600 None:intergenic 50.0%
ATCTCCGCAAATCCTACCGT+TGG - chr3.4:83946547-83946566 None:intergenic 50.0%
CAAAAGAGACTGCCAACCAG+TGG - chr3.4:83946383-83946402 None:intergenic 50.0%
CACAATTCCAACGGTGGCTA+GGG - chr3.4:83947827-83947846 None:intergenic 50.0%
CAGAACATGCAACCTCGTAG+GGG - chr3.4:83944915-83944934 None:intergenic 50.0%
CCTATCACCTGACAGGCTAA+AGG - chr3.4:83944358-83944377 None:intergenic 50.0%
CCTTGTTGCTCCCATATGGA+CGG - chr3.4:83943872-83943891 None:intergenic 50.0%
CCTTTAGCCTGTCAGGTGAT+AGG + chr3.4:83944355-83944374 MS.gene013571:intron 50.0%
CGCCGAGCATATCTACAAAG+AGG - chr3.4:83945153-83945172 None:intergenic 50.0%
CTAGTCCTCACCGTCCATAT+GGG + chr3.4:83943859-83943878 MS.gene013571:CDS 50.0%
GAATCAGAGAAGCAGGTGGA+TGG + chr3.4:83943913-83943932 MS.gene013571:CDS 50.0%
GAGTGAAGTGAGGGTGGTTT+GGG + chr3.4:83946238-83946257 MS.gene013571:intron 50.0%
GCTTGAAATGAAAGGGGAGG+AGG + chr3.4:83943245-83943264 MS.gene013571:CDS 50.0%
GTCCCGAAAGTCAGCTTAGA+CGG - chr3.4:83944106-83944125 None:intergenic 50.0%
TACCATCGGATTCGGGAAAG+CGG - chr3.4:83945218-83945237 None:intergenic 50.0%
TCGCGAGAGTGAAGATGGAA+TGG + chr3.4:83946085-83946104 MS.gene013571:intron 50.0%
TGAAATGAAAGGGGAGGAGG+AGG + chr3.4:83943248-83943267 MS.gene013571:CDS 50.0%
TGAGTGAAGTGAGGGTGGTT+TGG + chr3.4:83946237-83946256 MS.gene013571:intron 50.0%
TGCTGTATCCCGTGCATTTG+GGG + chr3.4:83946569-83946588 MS.gene013571:CDS 50.0%
TGGCTATGGCAGAACAGCAA+CGG - chr3.4:83942254-83942273 None:intergenic 50.0%
TGGTGGAAGTGGAGGAAGAA+GGG + chr3.4:83946165-83946184 MS.gene013571:intron 50.0%
TTGCTTCTGTCCAGTTCCTC+AGG + chr3.4:83942430-83942449 MS.gene013571:CDS 50.0%
! TAAGCTGACTTTCGGGACTC+TGG + chr3.4:83944108-83944127 MS.gene013571:intron 50.0%
!! AGATGGAATGGATTGGGTGG+TGG + chr3.4:83946097-83946116 MS.gene013571:intron 50.0%
!! CATGTTGCACAGAAGTGCTC+TGG + chr3.4:83947644-83947663 MS.gene013571:intron 50.0%
AAGAGACTGCCAACCAGTGG+CGG - chr3.4:83946380-83946399 None:intergenic 55.0%
ACACCGTCGTGCAACCACAA+AGG - chr3.4:83945967-83945986 None:intergenic 55.0%
CACCGTCGTGCAACCACAAA+GGG - chr3.4:83945966-83945985 None:intergenic 55.0%
CCCTCCATGGCCATCAAACA+CGG - chr3.4:83942409-83942428 None:intergenic 55.0%
CCGTCCATATGGGAGCAACA+AGG + chr3.4:83943869-83943888 MS.gene013571:CDS 55.0%
GAAACTGCGTCTGAGCTGCA+AGG - chr3.4:83947115-83947134 None:intergenic 55.0%
GCAGGGTCCACGTGAAGAAA+TGG + chr3.4:83942332-83942351 MS.gene013571:CDS 55.0%
GGACAGAAGCAAACCCTCCA+TGG - chr3.4:83942422-83942441 None:intergenic 55.0%
GTGCTTGCAGGAAGACAGAC+TGG + chr3.4:83947752-83947771 MS.gene013571:intron 55.0%
TCCACCACTCTCATCCACTC+CGG - chr3.4:83946152-83946171 None:intergenic 55.0%
TCGCATGTCCCCAAATGCAC+GGG - chr3.4:83946580-83946599 None:intergenic 55.0%
TCTGCAGGACCAACGTACAC+AGG + chr3.4:83947372-83947391 MS.gene013571:intron 55.0%
TCTTTCGCGGCCGTGTTTGA+TGG + chr3.4:83942396-83942415 MS.gene013571:CDS 55.0%
TGGTCTCCCTTTAGCCTGTC+AGG + chr3.4:83944348-83944367 MS.gene013571:intron 55.0%
TTGCTCCCATATGGACGGTG+AGG - chr3.4:83943867-83943886 None:intergenic 55.0%
TTGTGGTTGCACGACGGTGT+AGG + chr3.4:83945967-83945986 MS.gene013571:intron 55.0%
! CCGTGTTTGATGGCCATGGA+GGG + chr3.4:83942406-83942425 MS.gene013571:CDS 55.0%
! GATGAGAGTGGTGGAAGTGG+AGG + chr3.4:83946157-83946176 MS.gene013571:intron 55.0%
! GTGGATGAGAGTGGTGGAAG+TGG + chr3.4:83946154-83946173 MS.gene013571:intron 55.0%
! GTGGTGGAAGTGGAGGAAGA+AGG + chr3.4:83946164-83946183 MS.gene013571:intron 55.0%
!! GAGGCCTTGTTGCTCCCATA+TGG - chr3.4:83943876-83943895 None:intergenic 55.0%
ACCACTCTCATCCACTCCGG+CGG - chr3.4:83946149-83946168 None:intergenic 60.0%
AGAGACTGCCAACCAGTGGC+GGG - chr3.4:83946379-83946398 None:intergenic 60.0%
CGGCCGCGAAAGAGAAACCT+TGG - chr3.4:83942389-83942408 None:intergenic 60.0%
CGGGTGCACATACAGCTGAG+GGG - chr3.4:83946360-83946379 None:intergenic 60.0%
GCGGGTGCACATACAGCTGA+GGG - chr3.4:83946361-83946380 None:intergenic 60.0%
GGGGAGGAGGAGGATGAATC+AGG + chr3.4:83943258-83943277 MS.gene013571:CDS 60.0%
GGTTGCACGACGGTGTAGGA+CGG + chr3.4:83945971-83945990 MS.gene013571:intron 60.0%
TATGTGCACCCGCCACTGGT+TGG + chr3.4:83946368-83946387 MS.gene013571:intron 60.0%
TTCCAACGGTGGCTAGGGCT+TGG - chr3.4:83947822-83947841 None:intergenic 60.0%
! GCCGTGTTTGATGGCCATGG+AGG + chr3.4:83942405-83942424 MS.gene013571:CDS 60.0%
! TGAGGGTGGTTTGGGTCAGC+TGG + chr3.4:83946246-83946265 MS.gene013571:intron 60.0%
!! GAATGGATTGGGTGGTGGCG+CGG + chr3.4:83946102-83946121 MS.gene013571:intron 60.0%
AACCTCCTGACCCTGGGTCC+TGG - chr3.4:83944784-83944803 None:intergenic 65.0%
AGTGGCGTCTCCAGGACCCA+GGG + chr3.4:83944771-83944790 MS.gene013571:intron 65.0%
GCCGGAGTGGATGAGAGTGG+TGG + chr3.4:83946148-83946167 MS.gene013571:intron 65.0%
GCTGTATGTGCACCCGCCAC+TGG + chr3.4:83946364-83946383 MS.gene013571:intron 65.0%
GGCGGGTGCACATACAGCTG+AGG - chr3.4:83946362-83946381 None:intergenic 65.0%
GTCCAAGCCCTAGCCACCGT+TGG + chr3.4:83947817-83947836 MS.gene013571:CDS 65.0%
TTGGCAGCAGTGGCGTCTCC+AGG + chr3.4:83944763-83944782 MS.gene013571:intron 65.0%
! GCGGCCGTGTTTGATGGCCA+TGG + chr3.4:83942402-83942421 MS.gene013571:CDS 65.0%
! GGCCGCTTTCCCGAATCCGA+TGG + chr3.4:83945213-83945232 MS.gene013571:intron 65.0%
!! GCGGTGGAGTTTGGTGGTGG+TGG + chr3.4:83946121-83946140 MS.gene013571:intron 65.0%
!! TTTGGTGGTGGTGGTGCCGC+CGG + chr3.4:83946130-83946149 MS.gene013571:intron 65.0%
CAGTGGCGTCTCCAGGACCC+AGG + chr3.4:83944770-83944789 MS.gene013571:intron 70.0%
CGTCTCCAGGACCCAGGGTC+AGG + chr3.4:83944776-83944795 MS.gene013571:intron 70.0%
CTCCAGGACCCAGGGTCAGG+AGG + chr3.4:83944779-83944798 MS.gene013571:intron 70.0%
GCCGCCGGAGTGGATGAGAG+TGG + chr3.4:83946145-83946164 MS.gene013571:intron 70.0%
GGTGGCGCGGTGGAGTTTGG+TGG + chr3.4:83946115-83946134 MS.gene013571:intron 70.0%
! GGCGCGGTGGAGTTTGGTGG+TGG + chr3.4:83946118-83946137 MS.gene013571:intron 70.0%
! GGTGGTGGCGCGGTGGAGTT+TGG + chr3.4:83946112-83946131 MS.gene013571:intron 70.0%
! TGGATTGGGTGGTGGCGCGG+TGG + chr3.4:83946105-83946124 MS.gene013571:intron 70.0%
!! TGGTGGTGGTGCCGCCGGAG+TGG + chr3.4:83946135-83946154 MS.gene013571:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 83942132 83947885 83942132 ID=MS.gene013571
chr3.4 mRNA 83942132 83947885 83942132 ID=MS.gene013571.t1;Parent=MS.gene013571
chr3.4 exon 83942132 83942451 83942132 ID=MS.gene013571.t1.exon1;Parent=MS.gene013571.t1
chr3.4 CDS 83942132 83942451 83942132 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83943005 83943133 83943005 ID=MS.gene013571.t1.exon2;Parent=MS.gene013571.t1
chr3.4 CDS 83943005 83943133 83943005 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83943245 83943350 83943245 ID=MS.gene013571.t1.exon3;Parent=MS.gene013571.t1
chr3.4 CDS 83943245 83943350 83943245 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83943825 83943935 83943825 ID=MS.gene013571.t1.exon4;Parent=MS.gene013571.t1
chr3.4 CDS 83943825 83943935 83943825 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83946540 83946619 83946540 ID=MS.gene013571.t1.exon5;Parent=MS.gene013571.t1
chr3.4 CDS 83946540 83946619 83946540 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83946745 83946798 83946745 ID=MS.gene013571.t1.exon6;Parent=MS.gene013571.t1
chr3.4 CDS 83946745 83946798 83946745 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83946913 83947029 83946913 ID=MS.gene013571.t1.exon7;Parent=MS.gene013571.t1
chr3.4 CDS 83946913 83947029 83946913 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83947120 83947174 83947120 ID=MS.gene013571.t1.exon8;Parent=MS.gene013571.t1
chr3.4 CDS 83947120 83947174 83947120 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83947267 83947299 83947267 ID=MS.gene013571.t1.exon9;Parent=MS.gene013571.t1
chr3.4 CDS 83947267 83947299 83947267 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83947379 83947425 83947379 ID=MS.gene013571.t1.exon10;Parent=MS.gene013571.t1
chr3.4 CDS 83947379 83947425 83947379 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
chr3.4 exon 83947762 83947885 83947762 ID=MS.gene013571.t1.exon11;Parent=MS.gene013571.t1
chr3.4 CDS 83947762 83947885 83947762 ID=cds.MS.gene013571.t1;Parent=MS.gene013571.t1
Gene Sequence

>MS.gene013571

ATGGCGTTATCAACACCACATATACAAAGATTCCTCTTAACTAAGCTCCATAAACACTCCACCTCTTCCAAATACATAAACACAAACAGAAACAAAAACAGATTCATCAGAAGAAGAAACCGTTGCTGTTCTGCCATAGCCATTGATGCACCTTCATCATTGACAGACTCTCCTCCTATTAGATGGGGATCAGTATCTTTGCAGGGTCCACGTGAAGAAATGGAAGATGATATTATTCTTAGGCCAAATAGTCTCCAAGGTTTCTCTTTCGCGGCCGTGTTTGATGGCCATGGAGGGTTTGCTTCTGTCCAGTTCCTCAGGTCTTAGCTATATTCAATTTTCCTTTCTCATGTTTGTTAGCTTAATTAATTAATTATGTGTGTTTGGGGCGAGCTTTTGATCAAAATAGCCTTGTATTGATTTTGTAAATTTGATTTGATTATAATCGAGTTTGAAGTGAAGTTAGTGATCTTTCGATGTTTCTTTATTATGAAAGCCGGTGTAATTTGTTTGGATAAGCAACTTAGTTAAATGCTTATAACATAGGTGCTTATCATTTAAGTGCTTATGTATAAGCTATCATGTACCACTTATGAAAATAAGCTTAAAACAGCTCATGGACACATGTCATATAAGATGTTTCCATAAGCTTTCCCAAACAATCTCACTAGTGTTCATGTCACTAGATATACTCAAATAAGCCAATCCAAACATGTCCTAAAGCTTAGTGTAAATTTGGAACCAAACACATTTGTGGTTTTATTGGATCACATTTACATCAAATTTGAAATTCTCTACCATAAGAGCAAATTCACACGATGATTATATGGATCATCTAAATTATTGATTTTATGTGCCAAATGCCAACTACAGGGATGAGTTATACAAGGAGTGTCTTGAAGCTCTACAAGGTGGGTTACTATTGCTTGAGAAAGATTTCAAAGCTGTTGAAGAAGCATTAAAGCAGGCATTTGTTAAAGCTGACATGAGGTTGTTAAAATGGTAAGCCAGTTAATACATAAAACGTGTCTAATTCAATAGTTTCCAAATGATTCTAGATTTGTTATGATTACATTGAAGATTTAGACTTTAGACAGTATTTTGTTTTTAAAGGCTTGAAATGAAAGGGGAGGAGGAGGATGAATCAGGTGCTACAGCAACTGCCATATTCCTAGGAAATAATAAGCTGCTAATTTCACATATTGGTGACTCATCTGTGGTATGTATTATAATCCATCCTTATTGTGCCTCTCATAAAACATGCACAATGTTCATAGTAGAAAGAATATTCTTTCTACCATGAATGTGTCACAAAACCAATTTTGTATTCTTAGGTAGTAATGTATCGAAGGTGTGTCGTATCCAAATGACATTTGTGTCTTTAGTTGGTAAGAAGTATTGAAAATGTTTCTCAGAAGTATCTATTAATTTTTTTTTGAAGAGAATTAAAAGTATTGCTGTATACTACTTACTTAGTTACATATCGGGAAGTATCAGACATGTATCGATATTGGATAGCGTCGGACCCCGATACTTTTCCATTTTTTGAAGTATCTACAACTCATAAATCATACATTTGACTAGGGCTACTTCTTTATATTTAATCAATTTTATGATATTTATCATTCAACTAGAATATCTAGGGGATTGAATGTCATCAAAATCACATGATTAATCAATTTTATTCATGTAGGTTTTATGCAGATCTGGAAAACCAGAATTGCTAACTAGTCCTCACCGTCCATATGGGAGCAACAAGGCCTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGGTGTGTTTTCCTTGTTCCTTCATTTTTTATATGCTCTTTGAGTTTGGTCAATTTTTTTGGTTTTAAAGAGTCTAGGAGCAAAAATCACACTTACAAAGTGTGGAGAAGAGGGTTATTGGGGATTCGAATCCACGCCCCAACACATCAAATGTCTCCGCAACCTTTTACCGTCTAAGCTGACTTTCGGGACTCTGGTCATATTTCTATATAATGAAAATAAAATTCTGGTTCGAAAATTATGAGTTGTGACAACTTAGGATGTGGATAATTAATCTGATGTTTTATGGGGCATATAGCTATTTTCCATTTCCTAGTTTTACCAAGTGTTGTGGTTTGATTGTTTGAGAACATGAAATATATTGTTTCCAATAAGGTTCCAATCAGTTACCACTGTCAAAAAGACATCAATTTATGGTCTCCCTTTAGCCTGTCAGGTGATAGGAAATTAAATGGTCATTTTGAATAATTTGTTTAGGTAAACTTGATAAGTGCAAAAGCACCTATCCAATATTATTAAAAAAGAGATGAAAAGAAATAACAAAAACAGTTGAGGGGACTAGACCAAACTCAAACAAAAGCAAAAAGAAACAAAAGAAAAAACAAATAGTTTCGTACACGATACCTATCTCTAAAAACACAATCCTAATAAAATAGGACAGTTCGGACAGATAACTCCCAAAACAAAATCATGAAATCAAAGCTAATATCCAACTACAAATTAGGTGCTCATTTTGAATTTCATTGATATTTAGGAGCTCATATTTCTCACTTAGTTTATAGTATAAGCTTCAAATTACACTTTATTGAAGGTCATTCTTTTAATTGGGTTGGCAGCAGTGGCGTCTCCAGGACCCAGGGTCAGGAGGTTCAAAATTTTAAATTTTAATTTATAATAATATAATAAATGTATCCAAAAAATTACATTGTATTAAATTTACAATGTAGTCAAACAACTCCATCCATTCTTTACAAATGTCCCCTACGAGGTTGCATGTTCTGAAATCGTTGAATAATCAACTCATCATCAATCTTGTTCGCCACATCTCTCTCAATATAAAGAGATAACAACATAAATAGAATGCGGCGTCTTTTTCGATACTATACTCTAACCAATTACCAAATTCATTAAACCAAGAGGGACAAATCCTTCTCATTGAATTTTCAATTTTTCTTTGAAGAAAATTATGTTGATTAGGTTGGCAACTTGGCATGGTCCTCTTTGTAGATATGCTCGGCGCATTATCTCTTGATCATATGGATGGTATGTTGACATTTTAGGCCGCTTTCCCGAATCCGATGGTAACTCTTCCAAATTACATGAAACATGTTGAGAACTAATCCTTACTCATGGGATGGTAATTCTCTTTTTAAAAAATTCTCCATAACTCCTACAGTAACCAGCACAATAACAAACTTTAAGATTCAATGAGTATGAAATAAAAAACAACATTCTTTCACATTTTCACCTACTCCTTTCTTACCATCCATCCTCATTATAGTAAAACAATGTCACAAAGAAGCTCACTCACTATTATAATGAAACATGACAAATTAGAAGCCTTGATAAATTAGTAGGATTCAAACAAAGTAGAATAACATGATTCAAACAAATTAGTAAGATTCATATTAGTTTCTTGGTTCAAAAATCAAAACAGAAGTTCACCATGATTCAAACAAAGTAACATGTGGAAATGAAACACACAAGTTGAACAAATAGAATAACATGATAAATTAGTAGGATTCATATGTTTTTTGCATTTTGAACAAATTGAACAGGATACTAAAAAATCTGAAGCGAACCATTTACAACCCAAAAAACCATGAGTGTTAGATTGTCACTTTAAAACAATTCTCCAATCAAATTCACAACACAGACATATCATTAGGACCTCAATTGCATATTCAATCAACCAATTTATCACAATTGAAGTTATCTAAAAGAAATCCAAATTTCAAAACCCTAAACCAAAGATTTTTAATTGATTACCTTGGTGGTAGATTCAATGTCTTTGAAGGCTTTTGAATATCCCTTTGTGGTTGCACGACGGTGTAGGACGGAAAAATAAGGTGGAGACGGTGGTGGTTTATTGCAACTGATATTTGAGATGGAAAGGGAACTAAAACGTGACTGTAGATGGTAGTGGATAGGTCGCGAGAGTGAAGATGGAATGGATTGGGTGGTGGCGCGGTGGAGTTTGGTGGTGGTGGTGCCGCCGGAGTGGATGAGAGTGGTGGAAGTGGAGGAAGAAGGGTTTTCTAAGTTAAGAGAGGATAGTTTAGAGAGAAGTTGAGATGTGTAAATGAGTGAAGTGAGGGTGGTTTGGGTCAGCTGGTGCAAAAAAAATATATGAGGAGGTTCAAAGTGCAAAAAGCATAGGGGTATATGTGAAAAAATTTAATTTTGAGGGTTGGCAAGTGCATCCCCTCAGCTGTATGTGCACCCGCCACTGGTTGGCAGTCTCTTTTGTTTTCATAGTTTTTATTTAATTTACCTTGATGGTGCAATTTTGGACCATTTTTGAAATGAACGTTGTCGCCGTTCTATATAATGAAAGTACGTTGCATGGCTGATGATTACTCAAATGTGTACTGCCTTTTCTTTAGATTACCAACGGTAGGATTTGCGGAGATATTGCTGTATCCCGTGCATTTGGGGACATGCGATTCAAAACAAAGAAGATCGAGTACATTCCTTAATCTCTAAATCATTCCTTCTAGTATAAAGGAATTTATTTATTCTAAATTGTTAATATCTTCTACTCCTGTTAAAATGCTTCCTAAGTGTTATCTACCTTTTGCGTGTGAAAAGGATGCTACAAAAAGGAGCTCAGGAAGGAAGATGGACAGAAAAGTTCATTTCCCGGTAGGTAATCTTATGTATGTCTTGTAACAAATGCATTAAAATTGCGTGTTGTATTATATTAAAATTGAGCTTTTAACTAATTTAAGTTTTAATCTAATCATTTCTTTTGACCAGTGTACAGTTCAAAGATGACTTGGTTGTTGCACGCCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTATAGTGTTAGCATCCGATGGCTTATGGGATTACATGAGCAGGTTTATTTTTTGATCCCCAAAATCATTTCTGCTACCCTTCTTTTTTTGGTTCCGCAGAGAATTACCTTCACAATCTTGCTATCCTTGCAGCTCAGACGCAGTTTCTTTTGTGAGGGATCAACTACGAAAACATGGAAACACACAGGTATGCCAAAAACTTTATATTTGAGGCATTTTGATTCATATTGATAAAGCATCGAAGCAGCCGCAATAATATTCTGCTTGTTCATATTTCAGCTAGCTTGTGAATCCCTTGCACAAGTCGTTTTGGTAAGTTATAATAAATTATGTAGCAGTTATTATCATGAACCTGTACAGTTTTAGTAATCCATTATGATACACTCTGCAGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGTATGTATTTTGTCATGTATATATGACTTTGGACATCAGCAATTACGTTCTATAATTGGCTACCGCTATGCCTTTGTGAAAAGAAAAAAAAAAACTGTGATTAGCATTTAATAAAACTCATATTCTGGTCATGGAAGTTCTTTCTAGATACTATCATATCACTAGAGTATTAATGTGGTCCAAAGGTTTAGGATTTAAACAAATATGAAAAACTAGAACATGTTGCACAGAAGTGCTCTGGTCGTTATATACACATGTATAGAAAACATATATTTTGTTAATAATTTTTTTTATTTTTATATTAATTACCATGCGTTTTATATTGAGTGCTTGCAGGAAGACAGACTGGAAGAGTGTACCACTGCAGCAACAAAATGTCACATTTGAGCTAGTCCAAGCCCTAGCCACCGTTGGAATTGTGTCTATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG
Protein sequence

>MS.gene013571.t1

MALSTPHIQRFLLTKLHKHSTSSKYINTNRNKNRFIRRRNRCCSAIAIDAPSSLTDSPPIRWGSVSLQGPREEMEDDIILRPNSLQGFSFAAVFDGHGGFASVQFLRDELYKECLEALQGGLLLLEKDFKAVEEALKQAFVKADMRLLKWLEMKGEEEDESGATATAIFLGNNKLLISHIGDSSVVLCRSGKPELLTSPHRPYGSNKASLQEIKRIREAGGWITNGRICGDIAVSRAFGDMRFKTKKIEMLQKGAQEGRWTEKFISRVQFKDDLVVARPDIYQVTLGSDAEFIVLASDGLWDYMSSSDAVSFVRDQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKSVPLQQQNVTFELVQALATVGIVSIGIWFSSQLSL