Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013594.t1 | XP_003602244.1 | 94.6 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 3.30E-109 | 404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013594.t1 | O81223 | 71.6 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 3.5e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013594.t1 | G7J6W3 | 94.6 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 2.4e-109 | 404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013594 | MS.gene46392 | PPI |
| MS.gene72376 | MS.gene013594 | PPI |
| MS.gene61257 | MS.gene013594 | PPI |
| MS.gene011601 | MS.gene013594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013594.t1 | MTR_3g091440 | 94.619 | 223 | 2 | 2 | 1 | 223 | 1 | 213 | 2.81e-151 | 419 |
| MS.gene013594.t1 | MTR_3g091440 | 99.482 | 193 | 1 | 0 | 31 | 223 | 22 | 214 | 4.63e-139 | 389 |
| MS.gene013594.t1 | MTR_3g091440 | 92.216 | 167 | 3 | 2 | 1 | 167 | 1 | 157 | 3.81e-105 | 301 |
| MS.gene013594.t1 | MTR_4g099210 | 61.086 | 221 | 75 | 2 | 1 | 221 | 1 | 210 | 2.57e-94 | 275 |
| MS.gene013594.t1 | MTR_8g099575 | 59.276 | 221 | 79 | 2 | 1 | 221 | 1 | 210 | 8.26e-92 | 268 |
| MS.gene013594.t1 | MTR_8g027620 | 64.734 | 207 | 64 | 1 | 18 | 224 | 39 | 236 | 1.25e-90 | 269 |
| MS.gene013594.t1 | MTR_4g134250 | 55.856 | 222 | 88 | 2 | 1 | 222 | 16 | 227 | 4.27e-89 | 262 |
| MS.gene013594.t1 | MTR_3g060730 | 59.420 | 207 | 75 | 1 | 16 | 222 | 29 | 226 | 2.70e-88 | 260 |
| MS.gene013594.t1 | MTR_5g096420 | 56.422 | 218 | 86 | 1 | 5 | 222 | 18 | 226 | 7.64e-88 | 259 |
| MS.gene013594.t1 | MTR_3g060730 | 62.703 | 185 | 69 | 0 | 38 | 222 | 4 | 188 | 1.06e-86 | 254 |
| MS.gene013594.t1 | MTR_8g099570 | 54.955 | 222 | 86 | 2 | 1 | 222 | 46 | 253 | 1.26e-85 | 254 |
| MS.gene013594.t1 | MTR_1g016430 | 59.545 | 220 | 77 | 2 | 2 | 218 | 36 | 246 | 2.14e-85 | 253 |
| MS.gene013594.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 39 | 218 | 1 | 180 | 3.94e-85 | 250 |
| MS.gene013594.t1 | MTR_1g016430 | 58.796 | 216 | 86 | 1 | 3 | 218 | 66 | 278 | 8.36e-85 | 253 |
| MS.gene013594.t1 | MTR_2g027500 | 53.425 | 219 | 93 | 1 | 4 | 222 | 15 | 224 | 3.33e-84 | 249 |
| MS.gene013594.t1 | MTR_2g027440 | 52.273 | 220 | 94 | 2 | 3 | 221 | 19 | 228 | 1.73e-78 | 235 |
| MS.gene013594.t1 | MTR_2g027480 | 51.818 | 220 | 95 | 2 | 3 | 221 | 19 | 228 | 7.32e-78 | 234 |
| MS.gene013594.t1 | MTR_5g013560 | 52.941 | 221 | 81 | 3 | 1 | 221 | 1 | 198 | 3.15e-72 | 218 |
| MS.gene013594.t1 | MTR_2g027520 | 48.889 | 225 | 102 | 3 | 4 | 224 | 18 | 233 | 4.24e-72 | 219 |
| MS.gene013594.t1 | MTR_8g016170 | 56.098 | 205 | 81 | 1 | 17 | 221 | 60 | 255 | 3.05e-71 | 218 |
| MS.gene013594.t1 | MTR_8g016170 | 56.383 | 188 | 73 | 1 | 17 | 204 | 41 | 219 | 1.55e-65 | 202 |
| MS.gene013594.t1 | MTR_4g113505 | 51.366 | 183 | 89 | 0 | 41 | 223 | 9 | 191 | 2.98e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013594.t1 | AT5G24270 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 3.91e-112 | 320 |
| MS.gene013594.t1 | AT5G24270 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 3.91e-112 | 320 |
| MS.gene013594.t1 | AT5G24270 | 71.556 | 225 | 53 | 2 | 1 | 223 | 1 | 216 | 3.91e-112 | 320 |
| MS.gene013594.t1 | AT5G24270 | 77.419 | 186 | 42 | 0 | 38 | 223 | 6 | 191 | 1.41e-102 | 295 |
| MS.gene013594.t1 | AT4G17615 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.55e-91 | 268 |
| MS.gene013594.t1 | AT4G17615 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.55e-91 | 268 |
| MS.gene013594.t1 | AT4G17615 | 60.181 | 221 | 77 | 2 | 1 | 221 | 1 | 210 | 1.55e-91 | 268 |
| MS.gene013594.t1 | AT5G47100 | 59.729 | 221 | 78 | 2 | 1 | 221 | 1 | 210 | 4.47e-91 | 266 |
| MS.gene013594.t1 | AT1G64480 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 8.73e-91 | 266 |
| MS.gene013594.t1 | AT1G64480 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 8.73e-91 | 266 |
| MS.gene013594.t1 | AT1G64480 | 61.751 | 217 | 74 | 1 | 5 | 221 | 7 | 214 | 8.73e-91 | 266 |
| MS.gene013594.t1 | AT4G26570 | 59.242 | 211 | 77 | 1 | 12 | 222 | 25 | 226 | 9.81e-89 | 261 |
| MS.gene013594.t1 | AT4G33000 | 66.667 | 183 | 61 | 0 | 39 | 221 | 64 | 246 | 1.01e-86 | 257 |
| MS.gene013594.t1 | AT4G26570 | 58.140 | 215 | 77 | 2 | 12 | 222 | 25 | 230 | 1.39e-86 | 256 |
| MS.gene013594.t1 | AT4G33000 | 66.667 | 183 | 61 | 0 | 39 | 221 | 74 | 256 | 1.63e-86 | 256 |
| MS.gene013594.t1 | AT5G24270 | 74.233 | 163 | 42 | 0 | 61 | 223 | 7 | 169 | 3.34e-86 | 253 |
| MS.gene013594.t1 | AT5G55990 | 55.856 | 222 | 87 | 2 | 1 | 222 | 16 | 226 | 4.18e-86 | 254 |
| MS.gene013594.t1 | AT5G55990 | 55.856 | 222 | 87 | 2 | 1 | 222 | 16 | 226 | 4.18e-86 | 254 |
| MS.gene013594.t1 | AT4G17615 | 60.870 | 207 | 70 | 2 | 1 | 207 | 1 | 196 | 2.01e-84 | 251 |
| MS.gene013594.t1 | AT1G64480 | 61.500 | 200 | 68 | 1 | 5 | 204 | 7 | 197 | 6.76e-82 | 243 |
| MS.gene013594.t1 | AT4G16350 | 57.065 | 184 | 75 | 1 | 39 | 222 | 41 | 220 | 5.34e-73 | 221 |
| MS.gene013594.t1 | AT4G16350 | 57.065 | 184 | 75 | 1 | 39 | 222 | 41 | 220 | 5.34e-73 | 221 |
| MS.gene013594.t1 | AT4G17615 | 63.694 | 157 | 57 | 0 | 65 | 221 | 12 | 168 | 2.52e-71 | 215 |
| MS.gene013594.t1 | AT4G01420 | 47.664 | 214 | 100 | 2 | 1 | 214 | 1 | 202 | 2.61e-66 | 203 |
| MS.gene013594.t1 | AT5G47100 | 59.524 | 168 | 57 | 2 | 1 | 168 | 1 | 157 | 2.95e-65 | 200 |
| MS.gene013594.t1 | AT4G01420 | 47.549 | 204 | 95 | 2 | 1 | 204 | 1 | 192 | 1.98e-62 | 193 |
| MS.gene013594.t1 | AT4G26560 | 47.396 | 192 | 88 | 2 | 44 | 222 | 23 | 214 | 4.91e-61 | 190 |
| MS.gene013594.t1 | AT4G33000 | 65.116 | 129 | 45 | 0 | 39 | 167 | 64 | 192 | 9.75e-55 | 174 |
| MS.gene013594.t1 | AT4G33000 | 65.116 | 129 | 45 | 0 | 39 | 167 | 64 | 192 | 9.75e-55 | 174 |
| MS.gene013594.t1 | AT4G33000 | 65.625 | 128 | 44 | 0 | 39 | 166 | 64 | 191 | 1.37e-54 | 174 |
| MS.gene013594.t1 | AT4G33000 | 66.667 | 81 | 27 | 0 | 39 | 119 | 64 | 144 | 4.55e-31 | 112 |
Find 39 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTTCTTGCAATAAAAC+TGG | 0.237866 | 3.4:+83703280 | None:intergenic |
| CGCAACGGCGTTATTGAGTT+TGG | 0.301486 | 3.4:-83704058 | MS.gene013594:CDS |
| GGTTACACTTACTTTAGATA+TGG | 0.371596 | 3.4:+83703411 | None:intergenic |
| AATTCCAGCTAGCACTCTTC+AGG | 0.371966 | 3.4:-83704318 | MS.gene013594:CDS |
| TTGTATGATCTGAGGCAAAC+AGG | 0.377411 | 3.4:-83703816 | MS.gene013594:CDS |
| GCAGTTAAAGGAAATGGTAT+TGG | 0.379876 | 3.4:-83703694 | MS.gene013594:intron |
| GGTGAATTTGTTCGATCTCT+TGG | 0.384084 | 3.4:-83704037 | MS.gene013594:CDS |
| GTCATGTTCTTTATCAAAGA+TGG | 0.400140 | 3.4:+83703438 | None:intergenic |
| AGCAATTCAATTATTGAAGA+TGG | 0.401125 | 3.4:-83704459 | MS.gene013594:CDS |
| TTGTCTTCTAAAGCCGCATT+TGG | 0.412464 | 3.4:+83704004 | None:intergenic |
| TTATTTGCAGTTAAAGGAAA+TGG | 0.412783 | 3.4:-83703700 | MS.gene013594:intron |
| GATAGAGGCTATTGTGGATA+AGG | 0.439938 | 3.4:-83703631 | MS.gene013594:intron |
| TATCCATCTTCATCATTAAC+CGG | 0.453433 | 3.4:-83704624 | MS.gene013594:intron |
| CATTCCTGAAGAGTGCTAGC+TGG | 0.479014 | 3.4:+83704314 | None:intergenic |
| GATGCTGATACAAAAGATGA+TGG | 0.508848 | 3.4:-83703504 | MS.gene013594:CDS |
| GCTTTCAGATGACATGATAG+AGG | 0.529697 | 3.4:-83703646 | MS.gene013594:CDS |
| ACACTTACTTTAGATATGGA+AGG | 0.535196 | 3.4:+83703415 | None:intergenic |
| AATAAAACTGGGAAATGCTA+AGG | 0.541646 | 3.4:+83703292 | None:intergenic |
| TTACCGGTTAATGATGAAGA+TGG | 0.551660 | 3.4:+83704621 | None:intergenic |
| TAAAACACCACCAGGCTATG+AGG | 0.560691 | 3.4:-83704682 | MS.gene013594:CDS |
| CTGATACAAAAGATGATGGA+AGG | 0.564303 | 3.4:-83703500 | MS.gene013594:CDS |
| CACTTACTTTAGATATGGAA+GGG | 0.565574 | 3.4:+83703416 | None:intergenic |
| TGACATGATAGAGGCTATTG+TGG | 0.568591 | 3.4:-83703637 | MS.gene013594:CDS |
| ACTGTGGGATCCTCATAGCC+TGG | 0.572736 | 3.4:+83704672 | None:intergenic |
| AAGAACAGAGGTTGAAGACT+CGG | 0.584373 | 3.4:-83703267 | MS.gene013594:CDS |
| TGAAGATGGTCTTATTCACA+AGG | 0.588994 | 3.4:-83704445 | MS.gene013594:intron |
| GTTTCAGAAGCAAGAACTGT+GGG | 0.589683 | 3.4:+83704657 | None:intergenic |
| TTATTTGATGTTAAGCGCAA+CGG | 0.591522 | 3.4:-83704073 | MS.gene013594:CDS |
| GAAGGATTGATCAAGATGAG+TGG | 0.600746 | 3.4:-83703482 | MS.gene013594:CDS |
| TCTGTTCTTGCAATAAAACT+GGG | 0.605918 | 3.4:+83703281 | None:intergenic |
| TGTATGATCTGAGGCAAACA+GGG | 0.613793 | 3.4:-83703815 | MS.gene013594:CDS |
| AGTTACTGTGAGTGAAGTAG+AGG | 0.623440 | 3.4:-83704508 | MS.gene013594:CDS |
| AGGGTACATTGAAAGAGAAG+AGG | 0.631645 | 3.4:-83703796 | MS.gene013594:intron |
| AAGAATGTTAAAACACCACC+AGG | 0.637444 | 3.4:-83704690 | MS.gene013594:CDS |
| AACAGAGGTTGAAGACTCGG+AGG | 0.660525 | 3.4:-83703264 | MS.gene013594:CDS |
| ACAGAGGTTGAAGACTCGGA+GGG | 0.674518 | 3.4:-83703263 | MS.gene013594:CDS |
| GTGGGATCCTCATAGCCTGG+TGG | 0.686147 | 3.4:+83704675 | None:intergenic |
| TGTTTCAGAAGCAAGAACTG+TGG | 0.689885 | 3.4:+83704656 | None:intergenic |
| GATGAAGATGGATACTCACA+AGG | 0.700807 | 3.4:+83704633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATAAATCTATTTATT+AGG | + | chr3.4:83703388-83703407 | None:intergenic | 10.0% |
| !! | AAGTTTAATATTAATATAGC+TGG | + | chr3.4:83704215-83704234 | None:intergenic | 15.0% |
| !! | ACAAAAATATTATTACTTCT+AGG | - | chr3.4:83703629-83703648 | MS.gene013594:intron | 15.0% |
| !!! | ATTTGTTTTAATCAACTTTA+AGG | + | chr3.4:83703420-83703439 | None:intergenic | 15.0% |
| !! | AATAAGTCAAAAATCTATAG+AGG | + | chr3.4:83703885-83703904 | None:intergenic | 20.0% |
| !! | ATTCCAGTCAATAAAAAAAA+TGG | + | chr3.4:83704601-83704620 | None:intergenic | 20.0% |
| !! | TCATAAATCTATTTATTAGG+TGG | + | chr3.4:83703385-83703404 | None:intergenic | 20.0% |
| !! | TTATAACTCTTGCTTAATAT+AGG | + | chr3.4:83704082-83704101 | None:intergenic | 20.0% |
| !! | TTTAAATGTAACAATCGTAA+TGG | + | chr3.4:83704387-83704406 | None:intergenic | 20.0% |
| !!! | AAAAATGGATTTTCATTAAG+AGG | + | chr3.4:83704586-83704605 | None:intergenic | 20.0% |
| !!! | AATCCATTTTTTTTATTGAC+TGG | - | chr3.4:83704595-83704614 | MS.gene013594:intron | 20.0% |
| !!! | ATATTTTTGTAGAAGAGATT+AGG | + | chr3.4:83703619-83703638 | None:intergenic | 20.0% |
| !!! | TTCTGGTTATTTATTGAATT+GGG | - | chr3.4:83704106-83704125 | MS.gene013594:intron | 20.0% |
| ! | AGATAAAATGTCCTTAATTC+AGG | - | chr3.4:83703591-83703610 | MS.gene013594:intron | 25.0% |
| ! | AGCAATTCAATTATTGAAGA+TGG | - | chr3.4:83703514-83703533 | MS.gene013594:CDS | 25.0% |
| ! | TATAACTCATCCATACTTTA+TGG | - | chr3.4:83703716-83703735 | MS.gene013594:intron | 25.0% |
| ! | TATGTTAGAACTTAGAATCA+TGG | - | chr3.4:83704249-83704268 | MS.gene013594:intron | 25.0% |
| ! | TTATTTGCAGTTAAAGGAAA+TGG | - | chr3.4:83704273-83704292 | MS.gene013594:intron | 25.0% |
| !! | GTTCTGGTTATTTATTGAAT+TGG | - | chr3.4:83704105-83704124 | MS.gene013594:intron | 25.0% |
| AATAAAACTGGGAAATGCTA+AGG | + | chr3.4:83704684-83704703 | None:intergenic | 30.0% | |
| ACACTTACTTTAGATATGGA+AGG | + | chr3.4:83704561-83704580 | None:intergenic | 30.0% | |
| ATAGGAAACTCCAAAACTTA+GGG | + | chr3.4:83704064-83704083 | None:intergenic | 30.0% | |
| CAAGTTTAGACCATAAAGTA+TGG | + | chr3.4:83703729-83703748 | None:intergenic | 30.0% | |
| CACTTACTTTAGATATGGAA+GGG | + | chr3.4:83704560-83704579 | None:intergenic | 30.0% | |
| CATGGTTTATTTGCAGTTAA+AGG | - | chr3.4:83704267-83704286 | MS.gene013594:intron | 30.0% | |
| GCAAGAGTTATAATATGTTC+TGG | - | chr3.4:83704089-83704108 | MS.gene013594:intron | 30.0% | |
| GCATTAGAATGAAATAATGC+AGG | + | chr3.4:83703844-83703863 | None:intergenic | 30.0% | |
| GGTTACACTTACTTTAGATA+TGG | + | chr3.4:83704565-83704584 | None:intergenic | 30.0% | |
| GTCATGTTCTTTATCAAAGA+TGG | + | chr3.4:83704538-83704557 | None:intergenic | 30.0% | |
| TATAGGAAACTCCAAAACTT+AGG | + | chr3.4:83704065-83704084 | None:intergenic | 30.0% | |
| TATCCATCTTCATCATTAAC+CGG | - | chr3.4:83703349-83703368 | MS.gene013594:intron | 30.0% | |
| TCTGTTCTTGCAATAAAACT+GGG | + | chr3.4:83704695-83704714 | None:intergenic | 30.0% | |
| TTATTTGATGTTAAGCGCAA+CGG | - | chr3.4:83703900-83703919 | MS.gene013594:intron | 30.0% | |
| !!! | TGATATTTGCAGTTGCTTTT+AGG | - | chr3.4:83704134-83704153 | MS.gene013594:intron | 30.0% |
| AAACTCCAAAACTTAGGGAA+AGG | + | chr3.4:83704059-83704078 | None:intergenic | 35.0% | |
| AAGAATGTTAAAACACCACC+AGG | - | chr3.4:83703283-83703302 | MS.gene013594:CDS | 35.0% | |
| AATATCCCTACAAAATGTGG+AGG | + | chr3.4:83704660-83704679 | None:intergenic | 35.0% | |
| AGAAAAATCTGTTTGCAGAC+AGG | - | chr3.4:83703688-83703707 | MS.gene013594:CDS | 35.0% | |
| ATGTAACAATCGTAATGGCA+AGG | + | chr3.4:83704382-83704401 | None:intergenic | 35.0% | |
| ATTAGGTGGAACAGAATTAC+CGG | + | chr3.4:83703371-83703390 | None:intergenic | 35.0% | |
| CTCTGTTCTTGCAATAAAAC+TGG | + | chr3.4:83704696-83704715 | None:intergenic | 35.0% | |
| GAAAAATCTGTTTGCAGACA+GGG | - | chr3.4:83703689-83703708 | MS.gene013594:CDS | 35.0% | |
| GAGGAGAAACAATTGTGAAA+AGG | + | chr3.4:83703866-83703885 | None:intergenic | 35.0% | |
| GATGCTGATACAAAAGATGA+TGG | - | chr3.4:83704469-83704488 | MS.gene013594:CDS | 35.0% | |
| GCAGTTAAAGGAAATGGTAT+TGG | - | chr3.4:83704279-83704298 | MS.gene013594:intron | 35.0% | |
| GGTAATATCCCTACAAAATG+TGG | + | chr3.4:83704663-83704682 | None:intergenic | 35.0% | |
| ! | TGGTGTTTTTCATCCAAATG+CGG | - | chr3.4:83703956-83703975 | MS.gene013594:intron | 35.0% |
| ! | TTACCGGTTAATGATGAAGA+TGG | + | chr3.4:83703355-83703374 | None:intergenic | 35.0% |
| ! | TTTGTCCTTTCCCTAAGTTT+TGG | - | chr3.4:83704051-83704070 | MS.gene013594:CDS | 35.0% |
| !! | CTGATACAAAAGATGATGGA+AGG | - | chr3.4:83704473-83704492 | MS.gene013594:CDS | 35.0% |
| !! | TGAAGATGGTCTTATTCACA+AGG | - | chr3.4:83703528-83703547 | MS.gene013594:intron | 35.0% |
| !!! | CAGTTTTATTGCAAGAACAG+AGG | - | chr3.4:83704694-83704713 | MS.gene013594:CDS | 35.0% |
| !!! | CTTTTAGGTTGTATGATCTG+AGG | - | chr3.4:83704149-83704168 | MS.gene013594:intron | 35.0% |
| AAGAACAGAGGTTGAAGACT+CGG | - | chr3.4:83704706-83704725 | MS.gene013594:CDS | 40.0% | |
| AGGGTACATTGAAAGAGAAG+AGG | - | chr3.4:83704177-83704196 | MS.gene013594:intron | 40.0% | |
| AGTTACTGTGAGTGAAGTAG+AGG | - | chr3.4:83703465-83703484 | MS.gene013594:CDS | 40.0% | |
| GAAGGATTGATCAAGATGAG+TGG | - | chr3.4:83704491-83704510 | MS.gene013594:CDS | 40.0% | |
| GAGATTAGGCACCTGAATTA+AGG | + | chr3.4:83703605-83703624 | None:intergenic | 40.0% | |
| GATAGAGGCTATTGTGGATA+AGG | - | chr3.4:83704342-83704361 | MS.gene013594:intron | 40.0% | |
| GATCTTCTTGTTCAAGCTCT+AGG | - | chr3.4:83703752-83703771 | MS.gene013594:intron | 40.0% | |
| GATGAAGATGGATACTCACA+AGG | + | chr3.4:83703343-83703362 | None:intergenic | 40.0% | |
| GCTTTCAGATGACATGATAG+AGG | - | chr3.4:83704327-83704346 | MS.gene013594:intron | 40.0% | |
| GTTTCAGAAGCAAGAACTGT+GGG | + | chr3.4:83703319-83703338 | None:intergenic | 40.0% | |
| TGACATGATAGAGGCTATTG+TGG | - | chr3.4:83704336-83704355 | MS.gene013594:intron | 40.0% | |
| TGTTTCAGAAGCAAGAACTG+TGG | + | chr3.4:83703320-83703339 | None:intergenic | 40.0% | |
| ! | GGTGAATTTGTTCGATCTCT+TGG | - | chr3.4:83703936-83703955 | MS.gene013594:intron | 40.0% |
| ! | TGTATGATCTGAGGCAAACA+GGG | - | chr3.4:83704158-83704177 | MS.gene013594:intron | 40.0% |
| ! | TTGTATGATCTGAGGCAAAC+AGG | - | chr3.4:83704157-83704176 | MS.gene013594:intron | 40.0% |
| !! | TTGTCTTCTAAAGCCGCATT+TGG | + | chr3.4:83703972-83703991 | None:intergenic | 40.0% |
| AATTCCAGCTAGCACTCTTC+AGG | - | chr3.4:83703655-83703674 | MS.gene013594:CDS | 45.0% | |
| ATCCCTACAAAATGTGGAGG+AGG | + | chr3.4:83704657-83704676 | None:intergenic | 45.0% | |
| TAAAACACCACCAGGCTATG+AGG | - | chr3.4:83703291-83703310 | MS.gene013594:CDS | 45.0% | |
| ! | ATGCCTCCTCCACATTTTGT+AGG | - | chr3.4:83704651-83704670 | MS.gene013594:CDS | 45.0% |
| ! | TGCCTCCTCCACATTTTGTA+GGG | - | chr3.4:83704652-83704671 | MS.gene013594:CDS | 45.0% |
| AACAGAGGTTGAAGACTCGG+AGG | - | chr3.4:83704709-83704728 | MS.gene013594:CDS | 50.0% | |
| ACAGAGGTTGAAGACTCGGA+GGG | - | chr3.4:83704710-83704729 | MS.gene013594:CDS | 50.0% | |
| CGCAACGGCGTTATTGAGTT+TGG | - | chr3.4:83703915-83703934 | MS.gene013594:intron | 50.0% | |
| !! | CATTCCTGAAGAGTGCTAGC+TGG | + | chr3.4:83703662-83703681 | None:intergenic | 50.0% |
| ACTGTGGGATCCTCATAGCC+TGG | + | chr3.4:83703304-83703323 | None:intergenic | 55.0% | |
| GTGGGATCCTCATAGCCTGG+TGG | + | chr3.4:83703301-83703320 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83703259 | 83704736 | 83703259 | ID=MS.gene013594 |
| chr3.4 | mRNA | 83703259 | 83704736 | 83703259 | ID=MS.gene013594.t1;Parent=MS.gene013594 |
| chr3.4 | exon | 83704625 | 83704736 | 83704625 | ID=MS.gene013594.t1.exon1;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83704625 | 83704736 | 83704625 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83704446 | 83704528 | 83704446 | ID=MS.gene013594.t1.exon2;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83704446 | 83704528 | 83704446 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83704285 | 83704344 | 83704285 | ID=MS.gene013594.t1.exon3;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83704285 | 83704344 | 83704285 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83703996 | 83704104 | 83703996 | ID=MS.gene013594.t1.exon4;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83703996 | 83704104 | 83703996 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83703797 | 83703849 | 83703797 | ID=MS.gene013594.t1.exon5;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83703797 | 83703849 | 83703797 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83703632 | 83703712 | 83703632 | ID=MS.gene013594.t1.exon6;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83703632 | 83703712 | 83703632 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83703423 | 83703535 | 83703423 | ID=MS.gene013594.t1.exon7;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83703423 | 83703535 | 83703423 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| chr3.4 | exon | 83703259 | 83703322 | 83703259 | ID=MS.gene013594.t1.exon8;Parent=MS.gene013594.t1 |
| chr3.4 | CDS | 83703259 | 83703322 | 83703259 | ID=cds.MS.gene013594.t1;Parent=MS.gene013594.t1 |
| Gene Sequence |
| Protein sequence |
