Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011601.t1 | XP_013457573.1 | 100 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 4.70E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011601.t1 | O81445 | 80.6 | 211 | 41 | 0 | 1 | 211 | 1 | 211 | 6.7e-92 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011601.t1 | A0A072UP32 | 100.0 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 3.4e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011601 | MS.gene46392 | PPI |
| MS.gene011601 | MS.gene06712 | PPI |
| MS.gene011601 | MS.gene72376 | PPI |
| MS.gene011601 | MS.gene06931 | PPI |
| MS.gene61257 | MS.gene011601 | PPI |
| MS.gene011601 | MS.gene61257 | PPI |
| MS.gene011601 | MS.gene013594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011601.t1 | MTR_4g099210 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 8.32e-155 | 427 |
| MS.gene011601.t1 | MTR_3g091440 | 64.455 | 211 | 74 | 1 | 1 | 210 | 1 | 211 | 5.72e-98 | 284 |
| MS.gene011601.t1 | MTR_5g013560 | 69.014 | 213 | 54 | 2 | 1 | 213 | 1 | 201 | 6.62e-98 | 283 |
| MS.gene011601.t1 | MTR_5g096420 | 63.333 | 210 | 77 | 0 | 1 | 210 | 16 | 225 | 1.70e-94 | 275 |
| MS.gene011601.t1 | MTR_3g060730 | 62.857 | 210 | 78 | 0 | 1 | 210 | 16 | 225 | 8.89e-94 | 273 |
| MS.gene011601.t1 | MTR_4g134250 | 61.611 | 211 | 80 | 1 | 1 | 210 | 16 | 226 | 1.18e-93 | 273 |
| MS.gene011601.t1 | MTR_3g060730 | 66.486 | 185 | 62 | 0 | 26 | 210 | 3 | 187 | 1.81e-87 | 256 |
| MS.gene011601.t1 | MTR_3g091440 | 64.021 | 189 | 68 | 0 | 22 | 210 | 24 | 212 | 9.73e-87 | 256 |
| MS.gene011601.t1 | MTR_8g099575 | 54.286 | 210 | 96 | 0 | 1 | 210 | 1 | 210 | 8.49e-86 | 253 |
| MS.gene011601.t1 | MTR_1g016430 | 60.000 | 210 | 79 | 1 | 2 | 206 | 36 | 245 | 5.01e-84 | 249 |
| MS.gene011601.t1 | MTR_2g027500 | 54.327 | 208 | 95 | 0 | 3 | 210 | 16 | 223 | 5.28e-80 | 238 |
| MS.gene011601.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 1 | 179 | 2.66e-79 | 235 |
| MS.gene011601.t1 | MTR_8g099570 | 53.333 | 210 | 95 | 1 | 1 | 210 | 46 | 252 | 1.15e-78 | 236 |
| MS.gene011601.t1 | MTR_8g027620 | 56.923 | 195 | 84 | 0 | 16 | 210 | 39 | 233 | 2.11e-78 | 237 |
| MS.gene011601.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 99 | 277 | 2.22e-78 | 236 |
| MS.gene011601.t1 | MTR_2g027440 | 54.369 | 206 | 92 | 1 | 5 | 210 | 25 | 228 | 2.58e-77 | 232 |
| MS.gene011601.t1 | MTR_2g027480 | 52.381 | 210 | 98 | 1 | 3 | 210 | 19 | 228 | 3.91e-76 | 229 |
| MS.gene011601.t1 | MTR_4g113505 | 59.239 | 184 | 75 | 0 | 27 | 210 | 6 | 189 | 3.81e-74 | 224 |
| MS.gene011601.t1 | MTR_3g091440 | 66.242 | 157 | 52 | 1 | 1 | 156 | 1 | 157 | 7.55e-72 | 216 |
| MS.gene011601.t1 | MTR_2g027520 | 54.922 | 193 | 87 | 0 | 21 | 213 | 41 | 233 | 1.06e-70 | 215 |
| MS.gene011601.t1 | MTR_8g016170 | 48.165 | 218 | 104 | 1 | 2 | 210 | 38 | 255 | 2.28e-66 | 205 |
| MS.gene011601.t1 | MTR_8g016170 | 47.264 | 201 | 97 | 1 | 2 | 193 | 19 | 219 | 4.52e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011601.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene011601.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene011601.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene011601.t1 | AT5G47100 | 78.873 | 213 | 45 | 0 | 1 | 213 | 1 | 213 | 1.81e-121 | 343 |
| MS.gene011601.t1 | AT4G17615 | 78.894 | 199 | 42 | 0 | 1 | 199 | 1 | 199 | 1.92e-112 | 322 |
| MS.gene011601.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene011601.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene011601.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene011601.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene011601.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene011601.t1 | AT4G26570 | 61.538 | 208 | 80 | 0 | 3 | 210 | 18 | 225 | 5.22e-92 | 269 |
| MS.gene011601.t1 | AT4G17615 | 80.000 | 160 | 32 | 0 | 54 | 213 | 12 | 171 | 1.99e-90 | 263 |
| MS.gene011601.t1 | AT4G26570 | 60.377 | 212 | 80 | 1 | 3 | 210 | 18 | 229 | 7.18e-90 | 264 |
| MS.gene011601.t1 | AT5G47100 | 79.114 | 158 | 33 | 0 | 1 | 158 | 1 | 158 | 1.92e-88 | 258 |
| MS.gene011601.t1 | AT5G24270 | 62.032 | 187 | 71 | 0 | 25 | 211 | 4 | 190 | 2.31e-83 | 246 |
| MS.gene011601.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 38 | 246 | 9.00e-80 | 239 |
| MS.gene011601.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene011601.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene011601.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene011601.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 48 | 256 | 1.63e-79 | 238 |
| MS.gene011601.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene011601.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene011601.t1 | AT1G64480 | 53.403 | 191 | 89 | 0 | 3 | 193 | 7 | 197 | 7.80e-73 | 219 |
| MS.gene011601.t1 | AT5G24270 | 59.259 | 162 | 66 | 0 | 50 | 211 | 7 | 168 | 3.52e-68 | 207 |
| MS.gene011601.t1 | AT4G01420 | 49.268 | 205 | 99 | 2 | 1 | 203 | 1 | 202 | 8.20e-63 | 194 |
| MS.gene011601.t1 | AT4G01420 | 49.231 | 195 | 94 | 2 | 1 | 193 | 1 | 192 | 3.28e-59 | 184 |
| MS.gene011601.t1 | AT4G26560 | 47.120 | 191 | 88 | 2 | 33 | 210 | 23 | 213 | 8.59e-58 | 182 |
| MS.gene011601.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene011601.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene011601.t1 | AT4G33000 | 51.299 | 154 | 74 | 1 | 3 | 155 | 38 | 191 | 1.20e-52 | 169 |
| MS.gene011601.t1 | AT4G33000 | 46.087 | 115 | 61 | 1 | 3 | 116 | 38 | 152 | 4.47e-31 | 111 |
Find 31 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGATTTGCACAATAC+TGG | 0.282366 | 8.1:+23189075 | MS.gene011601:CDS |
| TTCCCAGGATACTGTCTTGT+TGG | 0.314753 | 8.1:-23187032 | None:intergenic |
| TGTCTTCTAGCGCTGCGTTT+GGG | 0.352671 | 8.1:-23188935 | None:intergenic |
| TTGTCTTCTAGCGCTGCGTT+TGG | 0.360612 | 8.1:-23188936 | None:intergenic |
| AAGAAAATATCTTTGCAAAT+CGG | 0.363808 | 8.1:+23188537 | MS.gene011601:CDS |
| AGCAGTTCTGTTGTTGATGA+TGG | 0.399714 | 8.1:+23188206 | MS.gene011601:CDS |
| AGAAAATATCTTTGCAAATC+GGG | 0.419742 | 8.1:+23188538 | MS.gene011601:CDS |
| TTTGCAGGAAGAATTTCAAT+TGG | 0.442118 | 8.1:+23188493 | MS.gene011601:intron |
| TTAGAATTAAATACAAAACT+TGG | 0.466958 | 8.1:-23189827 | None:intergenic |
| CGAGTCTGAAATGAAGTTGG+CGG | 0.474982 | 8.1:+23189359 | MS.gene011601:CDS |
| CGTGATTCTTGCATCACAAA+CGG | 0.498006 | 8.1:+23187064 | MS.gene011601:CDS |
| TTTCGAGTCTGAAATGAAGT+TGG | 0.499107 | 8.1:+23189356 | MS.gene011601:CDS |
| TTGATCTATTTGATGTCAAG+AGG | 0.532385 | 8.1:+23188862 | MS.gene011601:CDS |
| AAGCCAACAAGACAGTATCC+TGG | 0.544762 | 8.1:+23187029 | MS.gene011601:CDS |
| TAGAATTAAATACAAAACTT+GGG | 0.546002 | 8.1:-23189826 | None:intergenic |
| ATCACGGGATCCTCTTTCCC+AGG | 0.546051 | 8.1:-23187047 | None:intergenic |
| AGCCAACAAGACAGTATCCT+GGG | 0.547133 | 8.1:+23187030 | MS.gene011601:CDS |
| AAGACAGTATCCTGGGAAAG+AGG | 0.548655 | 8.1:+23187037 | MS.gene011601:CDS |
| TCTATTTGATGTCAAGAGGA+AGG | 0.556268 | 8.1:+23188866 | MS.gene011601:CDS |
| TCATGACACTTCCCTACCTA+AGG | 0.559648 | 8.1:+23189680 | MS.gene011601:CDS |
| GATGCTGACTTGAACCAAGA+TGG | 0.561233 | 8.1:+23189598 | MS.gene011601:CDS |
| GTTTGTGATGCAAGAATCAC+GGG | 0.563182 | 8.1:-23187062 | None:intergenic |
| CTTCTAGCGCTGCGTTTGGG+TGG | 0.565868 | 8.1:-23188932 | None:intergenic |
| CGTTTGTGATGCAAGAATCA+CGG | 0.569128 | 8.1:-23187063 | None:intergenic |
| TCCAGGACATACCTTAGGTA+GGG | 0.569895 | 8.1:-23189691 | None:intergenic |
| GCAGTTCTGTTGTTGATGAT+GGG | 0.573252 | 8.1:+23188207 | MS.gene011601:CDS |
| CTATTTGATGTCAAGAGGAA+GGG | 0.597733 | 8.1:+23188867 | MS.gene011601:CDS |
| GTCCAGGACATACCTTAGGT+AGG | 0.617633 | 8.1:-23189692 | None:intergenic |
| TGATGATGGGCTAATAAGCA+AGG | 0.637084 | 8.1:+23188220 | MS.gene011601:CDS |
| GATAGAAACAATTCTAGACA+AGG | 0.686128 | 8.1:+23189389 | MS.gene011601:CDS |
| TGGCTTTATAGAGCGTCCAG+AGG | 0.712213 | 8.1:+23189095 | MS.gene011601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGATAAAACTA+AGG | + | chr8.1:23187249-23187268 | MS.gene011601:intron | 10.0% |
| !! | AAAATTATATCAATGAAAAG+AGG | - | chr8.1:23189265-23189284 | None:intergenic | 15.0% |
| !! | ATTTCATATCTAATATTCTA+TGG | - | chr8.1:23189478-23189497 | None:intergenic | 15.0% |
| !! | TAGAATTAAATACAAAACTT+GGG | - | chr8.1:23189829-23189848 | None:intergenic | 15.0% |
| !! | TTAGAATTAAATACAAAACT+TGG | - | chr8.1:23189830-23189849 | None:intergenic | 15.0% |
| !! | TTCAAAATTGATGAAAATAT+TGG | + | chr8.1:23187439-23187458 | MS.gene011601:intron | 15.0% |
| !! | AAAAAAACAACCATGATATT+CGG | - | chr8.1:23187740-23187759 | None:intergenic | 20.0% |
| !! | AAAGAAGTTGTAAAAGAAAA+TGG | + | chr8.1:23187470-23187489 | MS.gene011601:intron | 20.0% |
| !! | AAATAAATAAGAAAGTTGCA+AGG | - | chr8.1:23188740-23188759 | None:intergenic | 20.0% |
| !! | AAGAAAATATCTTTGCAAAT+CGG | + | chr8.1:23188537-23188556 | MS.gene011601:CDS | 20.0% |
| !! | AATAAAAACATAACATTCAG+TGG | - | chr8.1:23189176-23189195 | None:intergenic | 20.0% |
| !! | AATAAGCTGAAAATAATCAA+TGG | + | chr8.1:23188288-23188307 | MS.gene011601:intron | 20.0% |
| !! | TGAACATCATAATCATAATA+TGG | - | chr8.1:23189750-23189769 | None:intergenic | 20.0% |
| !!! | AAAAAGTTATTTCACAAGAA+TGG | - | chr8.1:23188789-23188808 | None:intergenic | 20.0% |
| !!! | AAATAACTTTTTCAATTGAC+TGG | + | chr8.1:23188797-23188816 | MS.gene011601:intron | 20.0% |
| !!! | ATGTTTTCATATAGTAAACA+AGG | - | chr8.1:23187275-23187294 | None:intergenic | 20.0% |
| !!! | CAACTTTCTTATTTATTTCT+TGG | + | chr8.1:23188742-23188761 | MS.gene011601:intron | 20.0% |
| !!! | TAAAGAATATAATTGATAGC+AGG | - | chr8.1:23187808-23187827 | None:intergenic | 20.0% |
| !!! | TATGAAAACATTTTCAGTTT+TGG | + | chr8.1:23187284-23187303 | MS.gene011601:intron | 20.0% |
| !!! | TTGTTTTAAAACTGTTAACA+AGG | + | chr8.1:23187324-23187343 | MS.gene011601:intron | 20.0% |
| !!! | TTTGTGCATTTTTTTCATTT+TGG | + | chr8.1:23188413-23188432 | MS.gene011601:intron | 20.0% |
| !!! | TTTTGTATTTAATTCTAACG+TGG | + | chr8.1:23189832-23189851 | MS.gene011601:CDS | 20.0% |
| ! | AAAATGTTATCTGGATTAAG+AGG | - | chr8.1:23188395-23188414 | None:intergenic | 25.0% |
| ! | AAATGAAAAACATGAAGCAT+TGG | + | chr8.1:23187543-23187562 | MS.gene011601:intron | 25.0% |
| ! | AAATGCACAAAAATGTTATC+TGG | - | chr8.1:23188404-23188423 | None:intergenic | 25.0% |
| ! | AATCCCAAACATAATATATC+AGG | - | chr8.1:23189035-23189054 | None:intergenic | 25.0% |
| ! | AGAAAATATCTTTGCAAATC+GGG | + | chr8.1:23188538-23188557 | MS.gene011601:CDS | 25.0% |
| ! | ATTTCTATCTTCAAAGAAAC+CGG | - | chr8.1:23188703-23188722 | None:intergenic | 25.0% |
| ! | CATATGATATATCTCAACAT+GGG | + | chr8.1:23187619-23187638 | MS.gene011601:intron | 25.0% |
| ! | TCATATGATATATCTCAACA+TGG | + | chr8.1:23187618-23187637 | MS.gene011601:intron | 25.0% |
| ! | TGAAACCAAAATTTGATACA+CGG | - | chr8.1:23188138-23188157 | None:intergenic | 25.0% |
| ! | TGTCCTGATATATTATGTTT+GGG | + | chr8.1:23189029-23189048 | MS.gene011601:intron | 25.0% |
| ! | TTAAGGTAAACAACAATAAG+TGG | - | chr8.1:23188989-23189008 | None:intergenic | 25.0% |
| ! | TTGCAGAGAACAAAAATTTA+TGG | - | chr8.1:23188605-23188624 | None:intergenic | 25.0% |
| !! | AATGGAAAATAATTGATAGC+AGG | - | chr8.1:23187852-23187871 | None:intergenic | 25.0% |
| !! | CATTTTCAGAAACAATGTTT+TGG | + | chr8.1:23187412-23187431 | MS.gene011601:intron | 25.0% |
| !! | CTATCAATTATTTTCCATTG+TGG | + | chr8.1:23187853-23187872 | MS.gene011601:intron | 25.0% |
| !! | TTTGAGTTTATATGCTTATG+AGG | + | chr8.1:23187167-23187186 | MS.gene011601:intron | 25.0% |
| !!! | TTATTTTTGTCATTGATGCA+GGG | + | chr8.1:23189787-23189806 | MS.gene011601:intron | 25.0% |
| AAAATGTTTCCATCTTGTGA+TGG | + | chr8.1:23188054-23188073 | MS.gene011601:intron | 30.0% | |
| AACTCTGCATAAGAAATTGT+AGG | + | chr8.1:23188254-23188273 | MS.gene011601:intron | 30.0% | |
| AATGGTAGTTATTGGATTGT+AGG | + | chr8.1:23187116-23187135 | MS.gene011601:intron | 30.0% | |
| AATGTAAATTCACACTAAGC+AGG | - | chr8.1:23187194-23187213 | None:intergenic | 30.0% | |
| AATTTCTGACATCGTATCAA+TGG | - | chr8.1:23188827-23188846 | None:intergenic | 30.0% | |
| ACTATGAAGTTGACAAATAC+TGG | - | chr8.1:23188649-23188668 | None:intergenic | 30.0% | |
| ACTCTGCATAAGAAATTGTA+GGG | + | chr8.1:23188255-23188274 | MS.gene011601:intron | 30.0% | |
| ACTTCATAGTTTATACACCT+AGG | + | chr8.1:23188659-23188678 | MS.gene011601:intron | 30.0% | |
| AGATCAAAGTGAGGAATTTA+AGG | - | chr8.1:23189006-23189025 | None:intergenic | 30.0% | |
| AGATGAGAAAAATAAAGCCT+AGG | - | chr8.1:23188679-23188698 | None:intergenic | 30.0% | |
| AGTTGTAAAAGAAAATGGTG+AGG | + | chr8.1:23187475-23187494 | MS.gene011601:intron | 30.0% | |
| ATAACAAATCCATCACAAGA+TGG | - | chr8.1:23188066-23188085 | None:intergenic | 30.0% | |
| ATATACCATGAAAATAGTCC+AGG | - | chr8.1:23189711-23189730 | None:intergenic | 30.0% | |
| ATTCGTTTCTTTCAGTGAAA+TGG | + | chr8.1:23187098-23187117 | MS.gene011601:intron | 30.0% | |
| GAAAAATAGACATTGTTGAG+TGG | + | chr8.1:23189620-23189639 | MS.gene011601:CDS | 30.0% | |
| GAAAATGGTGAGGAATATAT+TGG | + | chr8.1:23187485-23187504 | MS.gene011601:intron | 30.0% | |
| GAAACAAAAATGAGACTTGT+TGG | + | chr8.1:23187949-23187968 | MS.gene011601:intron | 30.0% | |
| GAAACCAAAATTTGATACAC+GGG | - | chr8.1:23188137-23188156 | None:intergenic | 30.0% | |
| GATAGAAACAATTCTAGACA+AGG | + | chr8.1:23189389-23189408 | MS.gene011601:CDS | 30.0% | |
| GCTTAGTGTGAATTTACATT+TGG | + | chr8.1:23187194-23187213 | MS.gene011601:intron | 30.0% | |
| GTAAACTAAACCGAATATCA+TGG | + | chr8.1:23187727-23187746 | MS.gene011601:intron | 30.0% | |
| GTGTCCTGATATATTATGTT+TGG | + | chr8.1:23189028-23189047 | MS.gene011601:intron | 30.0% | |
| TAAAACTGTTAACAAGGAGA+TGG | + | chr8.1:23187330-23187349 | MS.gene011601:intron | 30.0% | |
| TAGTAACAATTGTGATACAG+AGG | + | chr8.1:23187363-23187382 | MS.gene011601:intron | 30.0% | |
| TTACGCACATTTACAAAACA+CGG | - | chr8.1:23187669-23187688 | None:intergenic | 30.0% | |
| TTCAGTGAAATGGTAGTTAT+TGG | + | chr8.1:23187108-23187127 | MS.gene011601:intron | 30.0% | |
| TTGATCTATTTGATGTCAAG+AGG | + | chr8.1:23188862-23188881 | MS.gene011601:CDS | 30.0% | |
| TTTCTATCTTCAAAGAAACC+GGG | - | chr8.1:23188702-23188721 | None:intergenic | 30.0% | |
| TTTGCAGGAAGAATTTCAAT+TGG | + | chr8.1:23188493-23188512 | MS.gene011601:intron | 30.0% | |
| ! | TAAACCCGTGTATCAAATTT+TGG | + | chr8.1:23188130-23188149 | MS.gene011601:intron | 30.0% |
| !! | ACTTGTTGGTTCATTTGTTT+CGG | + | chr8.1:23187963-23187982 | MS.gene011601:intron | 30.0% |
| !! | ATCTTGTGATGGATTTGTTA+TGG | + | chr8.1:23188065-23188084 | MS.gene011601:intron | 30.0% |
| !! | ATGAAGCATTGGAGATAAAT+GGG | + | chr8.1:23187554-23187573 | MS.gene011601:intron | 30.0% |
| !! | CAATGTCTATTTTTCCATCT+TGG | - | chr8.1:23189615-23189634 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTTCCCTTATT+TGG | + | chr8.1:23189294-23189313 | MS.gene011601:intron | 30.0% |
| !!! | AAACGTGTCATTTTCATTGA+GGG | - | chr8.1:23189147-23189166 | None:intergenic | 30.0% |
| !!! | AGTTAGACATTGCTTTTTTC+TGG | + | chr8.1:23189562-23189581 | MS.gene011601:intron | 30.0% |
| !!! | GTTATTTTTGTCATTGATGC+AGG | + | chr8.1:23189786-23189805 | MS.gene011601:intron | 30.0% |
| AACAATATTTCTTCTGCAGG+TGG | - | chr8.1:23189507-23189526 | None:intergenic | 35.0% | |
| AAGTGAACTGTATTGCAAAC+TGG | - | chr8.1:23187593-23187612 | None:intergenic | 35.0% | |
| AATACCCATGATCACATTAC+AGG | - | chr8.1:23188468-23188487 | None:intergenic | 35.0% | |
| AGCAACAATATTTCTTCTGC+AGG | - | chr8.1:23189510-23189529 | None:intergenic | 35.0% | |
| AGGTAAACAACAATAAGTGG+AGG | - | chr8.1:23188986-23189005 | None:intergenic | 35.0% | |
| CAATTGTGATACAGAGGATA+TGG | + | chr8.1:23187369-23187388 | MS.gene011601:intron | 35.0% | |
| CTATTTGATGTCAAGAGGAA+GGG | + | chr8.1:23188867-23188886 | MS.gene011601:CDS | 35.0% | |
| GCATTTGGAAGAGCTTATTT+CGG | - | chr8.1:23188373-23188392 | None:intergenic | 35.0% | |
| GTGGTTCAATTGAAATTGCT+GGG | + | chr8.1:23187985-23188004 | MS.gene011601:intron | 35.0% | |
| TCTATTTGATGTCAAGAGGA+AGG | + | chr8.1:23188866-23188885 | MS.gene011601:CDS | 35.0% | |
| TGCAAACTGGCAATAACTTA+CGG | - | chr8.1:23187580-23187599 | None:intergenic | 35.0% | |
| TGTCAGACATCACCAAATAA+GGG | - | chr8.1:23189309-23189328 | None:intergenic | 35.0% | |
| TTAGCCTGTAATGTGATCAT+GGG | + | chr8.1:23188461-23188480 | MS.gene011601:intron | 35.0% | |
| TTTAGCCTGTAATGTGATCA+TGG | + | chr8.1:23188460-23188479 | MS.gene011601:intron | 35.0% | |
| ! | ATTTTCCTGCAGTCTCATTT+AGG | + | chr8.1:23189052-23189071 | MS.gene011601:intron | 35.0% |
| ! | CTAAGTGAACACTTTTGTTC+TGG | + | chr8.1:23189197-23189216 | MS.gene011601:intron | 35.0% |
| ! | CTCTATGATTTGCACAATAC+TGG | + | chr8.1:23189075-23189094 | MS.gene011601:CDS | 35.0% |
| ! | GAAAGAAAGCAACCTTTTCT+GGG | - | chr8.1:23187889-23187908 | None:intergenic | 35.0% |
| ! | GTCATGATTTTGAGCAATGA+AGG | - | chr8.1:23189667-23189686 | None:intergenic | 35.0% |
| ! | TATGTCCTGGACTATTTTCA+TGG | + | chr8.1:23189703-23189722 | MS.gene011601:intron | 35.0% |
| ! | TGAAAGAAAGCAACCTTTTC+TGG | - | chr8.1:23187890-23187909 | None:intergenic | 35.0% |
| ! | TGCTTTTCTTCTACTCATTG+CGG | + | chr8.1:23187702-23187721 | MS.gene011601:intron | 35.0% |
| ! | TTTCGAGTCTGAAATGAAGT+TGG | + | chr8.1:23189356-23189375 | MS.gene011601:CDS | 35.0% |
| !! | CAGAACAAAAGTGTTCACTT+AGG | - | chr8.1:23189199-23189218 | None:intergenic | 35.0% |
| !! | CATGAAGCATTGGAGATAAA+TGG | + | chr8.1:23187553-23187572 | MS.gene011601:intron | 35.0% |
| !! | TATCTGGATTAAGAGGCATT+TGG | - | chr8.1:23188388-23188407 | None:intergenic | 35.0% |
| !!! | CAAACGTGTCATTTTCATTG+AGG | - | chr8.1:23189148-23189167 | None:intergenic | 35.0% |
| !!! | GCTTTATTTTTCTCATCTCC+CGG | + | chr8.1:23188681-23188700 | MS.gene011601:intron | 35.0% |
| AACTGTTAACAAGGAGATGG+AGG | + | chr8.1:23187333-23187352 | MS.gene011601:intron | 40.0% | |
| AATAGTCCAGGACATACCTT+AGG | - | chr8.1:23189699-23189718 | None:intergenic | 40.0% | |
| CATGGGTATTCTTTCTTTGC+AGG | + | chr8.1:23188478-23188497 | MS.gene011601:intron | 40.0% | |
| CGTGATTCTTGCATCACAAA+CGG | + | chr8.1:23187064-23187083 | MS.gene011601:CDS | 40.0% | |
| CGTTTGTGATGCAAGAATCA+CGG | - | chr8.1:23187066-23187085 | None:intergenic | 40.0% | |
| CTGTCAGACATCACCAAATA+AGG | - | chr8.1:23189310-23189329 | None:intergenic | 40.0% | |
| GGTGGTTCAATTGAAATTGC+TGG | + | chr8.1:23187984-23188003 | MS.gene011601:intron | 40.0% | |
| GTTTGTGATGCAAGAATCAC+GGG | - | chr8.1:23187065-23187084 | None:intergenic | 40.0% | |
| TTGACAAATACTGGAGCCAT+AGG | - | chr8.1:23188640-23188659 | None:intergenic | 40.0% | |
| ! | AGCAGTTCTGTTGTTGATGA+TGG | + | chr8.1:23188206-23188225 | MS.gene011601:CDS | 40.0% |
| ! | GAACACTTTTGTTCTGGTCT+TGG | + | chr8.1:23189203-23189222 | MS.gene011601:intron | 40.0% |
| ! | TCTCAACATGGGCTATATGA+AGG | + | chr8.1:23187630-23187649 | MS.gene011601:intron | 40.0% |
| !! | CTTATTTGGTGATGTCTGAC+AGG | + | chr8.1:23189308-23189327 | MS.gene011601:intron | 40.0% |
| !! | GCAGTTCTGTTGTTGATGAT+GGG | + | chr8.1:23188207-23188226 | MS.gene011601:CDS | 40.0% |
| !! | TGATGATGGGCTAATAAGCA+AGG | + | chr8.1:23188220-23188239 | MS.gene011601:CDS | 40.0% |
| !! | TGTTGGTTCATTTGTTTCGG+TGG | + | chr8.1:23187966-23187985 | MS.gene011601:intron | 40.0% |
| !! | TTTTTCTGGCCAGACTTTCT+TGG | + | chr8.1:23189576-23189595 | MS.gene011601:intron | 40.0% |
| AAGACAGTATCCTGGGAAAG+AGG | + | chr8.1:23187037-23187056 | MS.gene011601:CDS | 45.0% | |
| AAGCCAACAAGACAGTATCC+TGG | + | chr8.1:23187029-23187048 | MS.gene011601:CDS | 45.0% | |
| AGAGCTTGTGACAACAGCTT+AGG | - | chr8.1:23188320-23188339 | None:intergenic | 45.0% | |
| AGCAATCATCATCTCACCTC+TGG | - | chr8.1:23189114-23189133 | None:intergenic | 45.0% | |
| AGCCAACAAGACAGTATCCT+GGG | + | chr8.1:23187030-23187049 | MS.gene011601:CDS | 45.0% | |
| AGGACACACAGATCAAAGTG+AGG | - | chr8.1:23189015-23189034 | None:intergenic | 45.0% | |
| AGTCAGCATCCAAGAAAGTC+TGG | - | chr8.1:23189588-23189607 | None:intergenic | 45.0% | |
| TAGAGCCTAAATGAGACTGC+AGG | - | chr8.1:23189060-23189079 | None:intergenic | 45.0% | |
| TCATGACACTTCCCTACCTA+AGG | + | chr8.1:23189680-23189699 | MS.gene011601:CDS | 45.0% | |
| TCCAGGACATACCTTAGGTA+GGG | - | chr8.1:23189694-23189713 | None:intergenic | 45.0% | |
| TTCCCAGGATACTGTCTTGT+TGG | - | chr8.1:23187035-23187054 | None:intergenic | 45.0% | |
| ! | CGAGTCTGAAATGAAGTTGG+CGG | + | chr8.1:23189359-23189378 | MS.gene011601:CDS | 45.0% |
| !! | GATGCTGACTTGAACCAAGA+TGG | + | chr8.1:23189598-23189617 | MS.gene011601:CDS | 45.0% |
| GCAAGCATGTCAACTGCCTA+TGG | + | chr8.1:23188621-23188640 | MS.gene011601:intron | 50.0% | |
| GGATTGTAGGCTGTTGCGAT+TGG | + | chr8.1:23187129-23187148 | MS.gene011601:intron | 50.0% | |
| GTCCAGGACATACCTTAGGT+AGG | - | chr8.1:23189695-23189714 | None:intergenic | 50.0% | |
| TCCCTACCTAAGGTATGTCC+TGG | + | chr8.1:23189690-23189709 | MS.gene011601:intron | 50.0% | |
| TGTCTTCTAGCGCTGCGTTT+GGG | - | chr8.1:23188938-23188957 | None:intergenic | 50.0% | |
| TTGTCTTCTAGCGCTGCGTT+TGG | - | chr8.1:23188939-23188958 | None:intergenic | 50.0% | |
| !! | TGGCTTTATAGAGCGTCCAG+AGG | + | chr8.1:23189095-23189114 | MS.gene011601:CDS | 50.0% |
| ATCACGGGATCCTCTTTCCC+AGG | - | chr8.1:23187050-23187069 | None:intergenic | 55.0% | |
| !! | GCAACCTTTTCTGGGTGTCG+TGG | - | chr8.1:23187881-23187900 | None:intergenic | 55.0% |
| CTTCTAGCGCTGCGTTTGGG+TGG | - | chr8.1:23188935-23188954 | None:intergenic | 60.0% | |
| GGCACCACGACACCCAGAAA+AGG | + | chr8.1:23187874-23187893 | MS.gene011601:intron | 60.0% | |
| !! | TGGGTGTCGTGGTGCCACAA+TGG | - | chr8.1:23187870-23187889 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 23187011 | 23189871 | 23187011 | ID=MS.gene011601 |
| chr8.1 | mRNA | 23187011 | 23189871 | 23187011 | ID=MS.gene011601.t1;Parent=MS.gene011601 |
| chr8.1 | exon | 23187011 | 23187089 | 23187011 | ID=MS.gene011601.t1.exon1;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23187011 | 23187089 | 23187011 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23188159 | 23188241 | 23188159 | ID=MS.gene011601.t1.exon2;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23188159 | 23188241 | 23188159 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23188500 | 23188559 | 23188500 | ID=MS.gene011601.t1.exon3;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23188500 | 23188559 | 23188500 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23188858 | 23188966 | 23188858 | ID=MS.gene011601.t1.exon4;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23188858 | 23188966 | 23188858 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23189064 | 23189116 | 23189064 | ID=MS.gene011601.t1.exon5;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23189064 | 23189116 | 23189064 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23189330 | 23189410 | 23189330 | ID=MS.gene011601.t1.exon6;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23189330 | 23189410 | 23189330 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23189589 | 23189701 | 23189589 | ID=MS.gene011601.t1.exon7;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23189589 | 23189701 | 23189589 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| chr8.1 | exon | 23189808 | 23189871 | 23189808 | ID=MS.gene011601.t1.exon8;Parent=MS.gene011601.t1 |
| chr8.1 | CDS | 23189808 | 23189871 | 23189808 | ID=cds.MS.gene011601.t1;Parent=MS.gene011601.t1 |
| Gene Sequence |
| Protein sequence |
