Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61257.t1 | XP_013457573.1 | 100 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 4.70E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61257.t1 | O81445 | 80.6 | 211 | 41 | 0 | 1 | 211 | 1 | 211 | 6.7e-92 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61257.t1 | A0A072UP32 | 100.0 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 3.4e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene61257 | 0.805842 | 1.10E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene61257 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene61257 | 0.810658 | 1.03E-50 | -1.69E-46 |
| MS.gene049786 | MS.gene61257 | 0.809052 | 2.29E-50 | -1.69E-46 |
| MS.gene050253 | MS.gene61257 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene61257 | 0.812304 | 4.54E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene61257 | 0.804223 | 2.40E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene61257 | 0.831755 | 1.39E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene61257 | 0.858665 | 7.05E-63 | -1.69E-46 |
| MS.gene051700 | MS.gene61257 | 0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene61257 | 0.819018 | 1.45E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene61257 | 0.814918 | 1.21E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene61257 | 0.876718 | 1.12E-68 | -1.69E-46 |
| MS.gene052072 | MS.gene61257 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene61257 | 0.817683 | 2.90E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene61257 | 0.811293 | 7.53E-51 | -1.69E-46 |
| MS.gene052889 | MS.gene61257 | 0.803161 | 3.98E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene61257 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene053045 | MS.gene61257 | 0.817933 | 2.55E-52 | -1.69E-46 |
| MS.gene053094 | MS.gene61257 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene053298 | MS.gene61257 | 0.826457 | 2.69E-54 | -1.69E-46 |
| MS.gene053340 | MS.gene61257 | 0.818445 | 1.95E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene61257 | 0.805902 | 1.07E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene61257 | 0.808592 | 2.87E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene61257 | 0.815248 | 1.02E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene61257 | 0.800603 | 1.33E-48 | -1.69E-46 |
| MS.gene05469 | MS.gene61257 | 0.857579 | 1.48E-62 | -1.69E-46 |
| MS.gene05517 | MS.gene61257 | 0.815203 | 1.04E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene61257 | 0.832221 | 1.07E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene61257 | 0.847651 | 1.01E-59 | -1.69E-46 |
| MS.gene055314 | MS.gene61257 | 0.818048 | 2.40E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene61257 | 0.842002 | 3.37E-58 | -1.69E-46 |
| MS.gene055603 | MS.gene61257 | 0.851085 | 1.12E-60 | -1.69E-46 |
| MS.gene056181 | MS.gene61257 | 0.814419 | 1.56E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene61257 | 0.812368 | 4.39E-51 | -1.69E-46 |
| MS.gene056638 | MS.gene61257 | 0.811742 | 6.01E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene61257 | 0.832798 | 7.70E-56 | -1.69E-46 |
| MS.gene056787 | MS.gene61257 | 0.819402 | 1.18E-52 | -1.69E-46 |
| MS.gene056901 | MS.gene61257 | 0.810997 | 8.72E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene61257 | 0.879975 | 8.03E-70 | -1.69E-46 |
| MS.gene057102 | MS.gene61257 | 0.84338 | 1.45E-58 | -1.69E-46 |
| MS.gene057155 | MS.gene61257 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene61257 | 0.804584 | 2.01E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene61257 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene61257 | -0.812703 | 3.71E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene61257 | 0.826139 | 3.20E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene61257 | 0.82494 | 6.15E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene61257 | 0.810543 | 1.09E-50 | -1.69E-46 |
| MS.gene059360 | MS.gene61257 | 0.821017 | 5.05E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene61257 | -0.830757 | 2.45E-55 | -1.69E-46 |
| MS.gene06010 | MS.gene61257 | 0.80315 | 4.00E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene61257 | 0.84012 | 1.05E-57 | -1.69E-46 |
| MS.gene060365 | MS.gene61257 | 0.837975 | 3.79E-57 | -1.69E-46 |
| MS.gene060763 | MS.gene61257 | 0.804619 | 1.98E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene61257 | 0.81585 | 7.48E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene61257 | 0.830829 | 2.36E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene61257 | 0.805086 | 1.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61257 | MS.gene46392 | PPI |
| MS.gene61257 | MS.gene06931 | PPI |
| MS.gene61257 | MS.gene06712 | PPI |
| MS.gene61257 | MS.gene72376 | PPI |
| MS.gene61257 | MS.gene011601 | PPI |
| MS.gene61257 | MS.gene013594 | PPI |
| MS.gene011601 | MS.gene61257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61257.t1 | MTR_4g099210 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 8.32e-155 | 427 |
| MS.gene61257.t1 | MTR_3g091440 | 64.455 | 211 | 74 | 1 | 1 | 210 | 1 | 211 | 5.72e-98 | 284 |
| MS.gene61257.t1 | MTR_5g013560 | 69.014 | 213 | 54 | 2 | 1 | 213 | 1 | 201 | 6.62e-98 | 283 |
| MS.gene61257.t1 | MTR_5g096420 | 63.333 | 210 | 77 | 0 | 1 | 210 | 16 | 225 | 1.70e-94 | 275 |
| MS.gene61257.t1 | MTR_3g060730 | 62.857 | 210 | 78 | 0 | 1 | 210 | 16 | 225 | 8.89e-94 | 273 |
| MS.gene61257.t1 | MTR_4g134250 | 61.611 | 211 | 80 | 1 | 1 | 210 | 16 | 226 | 1.18e-93 | 273 |
| MS.gene61257.t1 | MTR_3g060730 | 66.486 | 185 | 62 | 0 | 26 | 210 | 3 | 187 | 1.81e-87 | 256 |
| MS.gene61257.t1 | MTR_3g091440 | 64.021 | 189 | 68 | 0 | 22 | 210 | 24 | 212 | 9.73e-87 | 256 |
| MS.gene61257.t1 | MTR_8g099575 | 54.286 | 210 | 96 | 0 | 1 | 210 | 1 | 210 | 8.49e-86 | 253 |
| MS.gene61257.t1 | MTR_1g016430 | 60.000 | 210 | 79 | 1 | 2 | 206 | 36 | 245 | 5.01e-84 | 249 |
| MS.gene61257.t1 | MTR_2g027500 | 54.327 | 208 | 95 | 0 | 3 | 210 | 16 | 223 | 5.28e-80 | 238 |
| MS.gene61257.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 1 | 179 | 2.66e-79 | 235 |
| MS.gene61257.t1 | MTR_8g099570 | 53.333 | 210 | 95 | 1 | 1 | 210 | 46 | 252 | 1.15e-78 | 236 |
| MS.gene61257.t1 | MTR_8g027620 | 56.923 | 195 | 84 | 0 | 16 | 210 | 39 | 233 | 2.11e-78 | 237 |
| MS.gene61257.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 99 | 277 | 2.22e-78 | 236 |
| MS.gene61257.t1 | MTR_2g027440 | 54.369 | 206 | 92 | 1 | 5 | 210 | 25 | 228 | 2.58e-77 | 232 |
| MS.gene61257.t1 | MTR_2g027480 | 52.381 | 210 | 98 | 1 | 3 | 210 | 19 | 228 | 3.91e-76 | 229 |
| MS.gene61257.t1 | MTR_4g113505 | 59.239 | 184 | 75 | 0 | 27 | 210 | 6 | 189 | 3.81e-74 | 224 |
| MS.gene61257.t1 | MTR_3g091440 | 66.242 | 157 | 52 | 1 | 1 | 156 | 1 | 157 | 7.55e-72 | 216 |
| MS.gene61257.t1 | MTR_2g027520 | 54.922 | 193 | 87 | 0 | 21 | 213 | 41 | 233 | 1.06e-70 | 215 |
| MS.gene61257.t1 | MTR_8g016170 | 48.165 | 218 | 104 | 1 | 2 | 210 | 38 | 255 | 2.28e-66 | 205 |
| MS.gene61257.t1 | MTR_8g016170 | 47.264 | 201 | 97 | 1 | 2 | 193 | 19 | 219 | 4.52e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61257.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene61257.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene61257.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene61257.t1 | AT5G47100 | 78.873 | 213 | 45 | 0 | 1 | 213 | 1 | 213 | 1.81e-121 | 343 |
| MS.gene61257.t1 | AT4G17615 | 78.894 | 199 | 42 | 0 | 1 | 199 | 1 | 199 | 1.92e-112 | 322 |
| MS.gene61257.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene61257.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene61257.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene61257.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene61257.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene61257.t1 | AT4G26570 | 61.538 | 208 | 80 | 0 | 3 | 210 | 18 | 225 | 5.22e-92 | 269 |
| MS.gene61257.t1 | AT4G17615 | 80.000 | 160 | 32 | 0 | 54 | 213 | 12 | 171 | 1.99e-90 | 263 |
| MS.gene61257.t1 | AT4G26570 | 60.377 | 212 | 80 | 1 | 3 | 210 | 18 | 229 | 7.18e-90 | 264 |
| MS.gene61257.t1 | AT5G47100 | 79.114 | 158 | 33 | 0 | 1 | 158 | 1 | 158 | 1.92e-88 | 258 |
| MS.gene61257.t1 | AT5G24270 | 62.032 | 187 | 71 | 0 | 25 | 211 | 4 | 190 | 2.31e-83 | 246 |
| MS.gene61257.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 38 | 246 | 9.00e-80 | 239 |
| MS.gene61257.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene61257.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene61257.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene61257.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 48 | 256 | 1.63e-79 | 238 |
| MS.gene61257.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene61257.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene61257.t1 | AT1G64480 | 53.403 | 191 | 89 | 0 | 3 | 193 | 7 | 197 | 7.80e-73 | 219 |
| MS.gene61257.t1 | AT5G24270 | 59.259 | 162 | 66 | 0 | 50 | 211 | 7 | 168 | 3.52e-68 | 207 |
| MS.gene61257.t1 | AT4G01420 | 49.268 | 205 | 99 | 2 | 1 | 203 | 1 | 202 | 8.20e-63 | 194 |
| MS.gene61257.t1 | AT4G01420 | 49.231 | 195 | 94 | 2 | 1 | 193 | 1 | 192 | 3.28e-59 | 184 |
| MS.gene61257.t1 | AT4G26560 | 47.120 | 191 | 88 | 2 | 33 | 210 | 23 | 213 | 8.59e-58 | 182 |
| MS.gene61257.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene61257.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene61257.t1 | AT4G33000 | 51.299 | 154 | 74 | 1 | 3 | 155 | 38 | 191 | 1.20e-52 | 169 |
| MS.gene61257.t1 | AT4G33000 | 46.087 | 115 | 61 | 1 | 3 | 116 | 38 | 152 | 4.47e-31 | 111 |
Find 31 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGATTTGCACAATAC+TGG | 0.282366 | 8.2:+22962807 | MS.gene61257:CDS |
| TTCCCAGGATACTGTCTTGT+TGG | 0.314753 | 8.2:-22960702 | None:intergenic |
| TGTCTTCTAGCGCTGCGTTT+GGG | 0.352671 | 8.2:-22962667 | None:intergenic |
| TTGTCTTCTAGCGCTGCGTT+TGG | 0.360612 | 8.2:-22962668 | None:intergenic |
| AAGAAAATATCTTTGCAAAT+CGG | 0.363808 | 8.2:+22962269 | MS.gene61257:CDS |
| AGCAGTTCTGTTGTTGATGA+TGG | 0.399714 | 8.2:+22961938 | MS.gene61257:CDS |
| AGAAAATATCTTTGCAAATC+GGG | 0.419742 | 8.2:+22962270 | MS.gene61257:CDS |
| TTTGCAGGAAGAATTTCAAT+TGG | 0.442118 | 8.2:+22962225 | MS.gene61257:intron |
| TTAGAATTAAATACAAAACT+TGG | 0.466958 | 8.2:-22963559 | None:intergenic |
| CGAGTCTGAAATGAAGTTGG+CGG | 0.474982 | 8.2:+22963091 | MS.gene61257:CDS |
| CGTGATTCTTGCATCACAAA+CGG | 0.498006 | 8.2:+22960734 | MS.gene61257:CDS |
| TTTCGAGTCTGAAATGAAGT+TGG | 0.499107 | 8.2:+22963088 | MS.gene61257:CDS |
| TTGATCTATTTGATGTCAAG+AGG | 0.532385 | 8.2:+22962594 | MS.gene61257:CDS |
| AAGCCAACAAGACAGTATCC+TGG | 0.544762 | 8.2:+22960699 | MS.gene61257:CDS |
| TAGAATTAAATACAAAACTT+GGG | 0.546002 | 8.2:-22963558 | None:intergenic |
| ATCACGGGATCCTCTTTCCC+AGG | 0.546051 | 8.2:-22960717 | None:intergenic |
| AGCCAACAAGACAGTATCCT+GGG | 0.547133 | 8.2:+22960700 | MS.gene61257:CDS |
| AAGACAGTATCCTGGGAAAG+AGG | 0.548655 | 8.2:+22960707 | MS.gene61257:CDS |
| TCTATTTGATGTCAAGAGGA+AGG | 0.556268 | 8.2:+22962598 | MS.gene61257:CDS |
| TCATGACACTTCCCTACCTA+AGG | 0.559648 | 8.2:+22963412 | MS.gene61257:CDS |
| GATGCTGACTTGAACCAAGA+TGG | 0.561233 | 8.2:+22963330 | MS.gene61257:CDS |
| GTTTGTGATGCAAGAATCAC+GGG | 0.563182 | 8.2:-22960732 | None:intergenic |
| CTTCTAGCGCTGCGTTTGGG+TGG | 0.565868 | 8.2:-22962664 | None:intergenic |
| CGTTTGTGATGCAAGAATCA+CGG | 0.569128 | 8.2:-22960733 | None:intergenic |
| GCAGTTCTGTTGTTGATGAT+GGG | 0.573252 | 8.2:+22961939 | MS.gene61257:CDS |
| TCCAGCACATACCTTAGGTA+GGG | 0.591653 | 8.2:-22963423 | None:intergenic |
| CTATTTGATGTCAAGAGGAA+GGG | 0.597733 | 8.2:+22962599 | MS.gene61257:CDS |
| GTCCAGCACATACCTTAGGT+AGG | 0.611062 | 8.2:-22963424 | None:intergenic |
| TGATGATGGGCTAATAAGCA+AGG | 0.637084 | 8.2:+22961952 | MS.gene61257:CDS |
| GATAGAAACAATTCTAGACA+AGG | 0.686128 | 8.2:+22963121 | MS.gene61257:CDS |
| TGGCTTTATAGAGCGTCCAG+AGG | 0.712213 | 8.2:+22962827 | MS.gene61257:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGATAAAACTA+AGG | + | chr8.2:22960919-22960938 | MS.gene61257:intron | 10.0% |
| !! | AAAATTATATCAATGAAAAG+AGG | - | chr8.2:22962997-22963016 | None:intergenic | 15.0% |
| !! | ATTTCATATCTAATATTCTA+TGG | - | chr8.2:22963210-22963229 | None:intergenic | 15.0% |
| !! | GAAATGTAATAACTTAATAA+GGG | + | chr8.2:22961315-22961334 | MS.gene61257:intron | 15.0% |
| !! | TAGAATTAAATACAAAACTT+GGG | - | chr8.2:22963561-22963580 | None:intergenic | 15.0% |
| !! | TTAGAATTAAATACAAAACT+TGG | - | chr8.2:22963562-22963581 | None:intergenic | 15.0% |
| !! | TTCAAAATTGATGAAAATAT+TGG | + | chr8.2:22961109-22961128 | MS.gene61257:intron | 15.0% |
| !! | AAAAAAACAACCATGATATT+CGG | - | chr8.2:22961472-22961491 | None:intergenic | 20.0% |
| !! | AAAGAAGTTGTAAAAGAAAA+TGG | + | chr8.2:22961140-22961159 | MS.gene61257:intron | 20.0% |
| !! | AAATAAATAAGAAAGTTGCA+AGG | - | chr8.2:22962472-22962491 | None:intergenic | 20.0% |
| !! | AAGAAAATATCTTTGCAAAT+CGG | + | chr8.2:22962269-22962288 | MS.gene61257:CDS | 20.0% |
| !! | AATAAAAACATAACATTCAG+TGG | - | chr8.2:22962908-22962927 | None:intergenic | 20.0% |
| !! | AATAAGCTGAAAATAATCAA+TGG | + | chr8.2:22962020-22962039 | MS.gene61257:intron | 20.0% |
| !! | GGAAATGTAATAACTTAATA+AGG | + | chr8.2:22961314-22961333 | MS.gene61257:intron | 20.0% |
| !! | TGAACATCATAATCATAATA+TGG | - | chr8.2:22963482-22963501 | None:intergenic | 20.0% |
| !!! | AAAAAGTTATTTCACAAGAA+TGG | - | chr8.2:22962521-22962540 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATATAGTAAACA+AGG | - | chr8.2:22960945-22960964 | None:intergenic | 20.0% |
| !!! | CAACTTTCTTATTTATTTCT+TGG | + | chr8.2:22962474-22962493 | MS.gene61257:intron | 20.0% |
| !!! | TAAAGAATATAATTGATAGC+AGG | - | chr8.2:22961540-22961559 | None:intergenic | 20.0% |
| !!! | TATGAAAACATTTTCAGTTT+TGG | + | chr8.2:22960954-22960973 | MS.gene61257:intron | 20.0% |
| !!! | TTGTGCATTTTTTTCATTTT+GGG | + | chr8.2:22962146-22962165 | MS.gene61257:intron | 20.0% |
| !!! | TTGTTTTAAAACTGTTAACA+AGG | + | chr8.2:22960994-22961013 | MS.gene61257:intron | 20.0% |
| !!! | TTTGTGCATTTTTTTCATTT+TGG | + | chr8.2:22962145-22962164 | MS.gene61257:intron | 20.0% |
| !!! | TTTTGTATTTAATTCTAACG+TGG | + | chr8.2:22963564-22963583 | MS.gene61257:CDS | 20.0% |
| ! | AAAAAAGCAATGTCTAACTA+AGG | - | chr8.2:22963293-22963312 | None:intergenic | 25.0% |
| ! | AAAATGTTATCTGGATTAAG+AGG | - | chr8.2:22962127-22962146 | None:intergenic | 25.0% |
| ! | AAATGAAAAACATGAAGCAT+TGG | + | chr8.2:22961213-22961232 | MS.gene61257:intron | 25.0% |
| ! | AAATGCACAAAAATGTTATC+TGG | - | chr8.2:22962136-22962155 | None:intergenic | 25.0% |
| ! | AATCCCAAACATAATATATC+AGG | - | chr8.2:22962767-22962786 | None:intergenic | 25.0% |
| ! | AGAAAATATCTTTGCAAATC+GGG | + | chr8.2:22962270-22962289 | MS.gene61257:CDS | 25.0% |
| ! | ATTTCTATCTTCAAAGAAAC+CGG | - | chr8.2:22962435-22962454 | None:intergenic | 25.0% |
| ! | CATATGATATATCTCAACAT+GGG | + | chr8.2:22961351-22961370 | MS.gene61257:intron | 25.0% |
| ! | TCATATGATATATCTCAACA+TGG | + | chr8.2:22961350-22961369 | MS.gene61257:intron | 25.0% |
| ! | TGAAACCAAAATTTGATACA+CGG | - | chr8.2:22961870-22961889 | None:intergenic | 25.0% |
| ! | TGTCCTGATATATTATGTTT+GGG | + | chr8.2:22962761-22962780 | MS.gene61257:intron | 25.0% |
| ! | TTAAGGTAAACAACAATAAG+TGG | - | chr8.2:22962721-22962740 | None:intergenic | 25.0% |
| ! | TTGCAGAGAACAAAAATTTA+TGG | - | chr8.2:22962337-22962356 | None:intergenic | 25.0% |
| !! | AATGGAAAATAATTGATAGC+AGG | - | chr8.2:22961584-22961603 | None:intergenic | 25.0% |
| !! | CATTTTCAGAAACAATGTTT+TGG | + | chr8.2:22961082-22961101 | MS.gene61257:intron | 25.0% |
| !! | CTATCAATTATTTTCCATTG+TGG | + | chr8.2:22961585-22961604 | MS.gene61257:intron | 25.0% |
| !! | TTTGAGTTTATATGCTTATG+AGG | + | chr8.2:22960837-22960856 | MS.gene61257:intron | 25.0% |
| !!! | TTATTTTTGTCATTGATGCA+GGG | + | chr8.2:22963519-22963538 | MS.gene61257:intron | 25.0% |
| !!! | TTTGGTTTTTTGTTAGAAGT+AGG | + | chr8.2:22961284-22961303 | MS.gene61257:intron | 25.0% |
| AAAATGTTTCCATCTTGTGA+TGG | + | chr8.2:22961786-22961805 | MS.gene61257:intron | 30.0% | |
| AACTCTGCATAAGAAATTGT+AGG | + | chr8.2:22961986-22962005 | MS.gene61257:intron | 30.0% | |
| AATGGTAGTTATTGGATTGT+AGG | + | chr8.2:22960786-22960805 | MS.gene61257:intron | 30.0% | |
| AATGTAAATTCACACTAAGC+AGG | - | chr8.2:22960864-22960883 | None:intergenic | 30.0% | |
| AATTTCTGACATCGTATCAA+TGG | - | chr8.2:22962559-22962578 | None:intergenic | 30.0% | |
| ACTATGAAGTTGACAAATAC+TGG | - | chr8.2:22962381-22962400 | None:intergenic | 30.0% | |
| ACTCTGCATAAGAAATTGTA+GGG | + | chr8.2:22961987-22962006 | MS.gene61257:intron | 30.0% | |
| ACTTCATAGTTTATACACCT+AGG | + | chr8.2:22962391-22962410 | MS.gene61257:intron | 30.0% | |
| AGATCAAAGTGAGGAATTTA+AGG | - | chr8.2:22962738-22962757 | None:intergenic | 30.0% | |
| AGATGAGAAAAATAAAGCCT+AGG | - | chr8.2:22962411-22962430 | None:intergenic | 30.0% | |
| AGTTGTAAAAGAAAATGGTG+AGG | + | chr8.2:22961145-22961164 | MS.gene61257:intron | 30.0% | |
| ATAACAAATCCATCACAAGA+TGG | - | chr8.2:22961798-22961817 | None:intergenic | 30.0% | |
| ATTCGTTTCTTTCAGTGAAA+TGG | + | chr8.2:22960768-22960787 | MS.gene61257:intron | 30.0% | |
| GAAAAATAGACATTGTTGAG+TGG | + | chr8.2:22963352-22963371 | MS.gene61257:CDS | 30.0% | |
| GAAAATGGTGAGGAATATAT+TGG | + | chr8.2:22961155-22961174 | MS.gene61257:intron | 30.0% | |
| GAAACAAAAATGAGACTTGT+TGG | + | chr8.2:22961681-22961700 | MS.gene61257:intron | 30.0% | |
| GAAACCAAAATTTGATACAC+GGG | - | chr8.2:22961869-22961888 | None:intergenic | 30.0% | |
| GATAGAAACAATTCTAGACA+AGG | + | chr8.2:22963121-22963140 | MS.gene61257:CDS | 30.0% | |
| GCTTAGTGTGAATTTACATT+TGG | + | chr8.2:22960864-22960883 | MS.gene61257:intron | 30.0% | |
| GTAAACTAAACCGAATATCA+TGG | + | chr8.2:22961459-22961478 | MS.gene61257:intron | 30.0% | |
| GTGTCCTGATATATTATGTT+TGG | + | chr8.2:22962760-22962779 | MS.gene61257:intron | 30.0% | |
| TAAAACTGTTAACAAGGAGA+TGG | + | chr8.2:22961000-22961019 | MS.gene61257:intron | 30.0% | |
| TAGTAACAATTGTGATACAG+AGG | + | chr8.2:22961033-22961052 | MS.gene61257:intron | 30.0% | |
| TTACGCACATTTACAAAACA+CGG | - | chr8.2:22961401-22961420 | None:intergenic | 30.0% | |
| TTCAGTGAAATGGTAGTTAT+TGG | + | chr8.2:22960778-22960797 | MS.gene61257:intron | 30.0% | |
| TTGATCTATTTGATGTCAAG+AGG | + | chr8.2:22962594-22962613 | MS.gene61257:CDS | 30.0% | |
| TTTCTATCTTCAAAGAAACC+GGG | - | chr8.2:22962434-22962453 | None:intergenic | 30.0% | |
| TTTGCAGGAAGAATTTCAAT+TGG | + | chr8.2:22962225-22962244 | MS.gene61257:intron | 30.0% | |
| ! | TAAACCCGTGTATCAAATTT+TGG | + | chr8.2:22961862-22961881 | MS.gene61257:intron | 30.0% |
| ! | TTTTTGTTAGAAGTAGGCAA+AGG | + | chr8.2:22961290-22961309 | MS.gene61257:intron | 30.0% |
| !! | ACTTGTTGGTTCATTTGTTT+CGG | + | chr8.2:22961695-22961714 | MS.gene61257:intron | 30.0% |
| !! | ATCTTGTGATGGATTTGTTA+TGG | + | chr8.2:22961797-22961816 | MS.gene61257:intron | 30.0% |
| !! | ATGAAGCATTGGAGATAAAT+GGG | + | chr8.2:22961224-22961243 | MS.gene61257:intron | 30.0% |
| !! | CAATGTCTATTTTTCCATCT+TGG | - | chr8.2:22963347-22963366 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTTCCCTTATT+TGG | + | chr8.2:22963026-22963045 | MS.gene61257:intron | 30.0% |
| !!! | AAACGTGTCATTTTCATTGA+GGG | - | chr8.2:22962879-22962898 | None:intergenic | 30.0% |
| !!! | AGTTAGACATTGCTTTTTTC+TGG | + | chr8.2:22963294-22963313 | MS.gene61257:intron | 30.0% |
| !!! | GTTATTTTTGTCATTGATGC+AGG | + | chr8.2:22963518-22963537 | MS.gene61257:intron | 30.0% |
| !!! | TGCAAGACAGTTCATTTTTT+TGG | + | chr8.2:22961266-22961285 | MS.gene61257:intron | 30.0% |
| AAATGAACTGTCTTGCAAAC+TGG | - | chr8.2:22961263-22961282 | None:intergenic | 35.0% | |
| AACAATATTTCTTCTGCAGG+TGG | - | chr8.2:22963239-22963258 | None:intergenic | 35.0% | |
| AATACCCATGATCACATTAC+AGG | - | chr8.2:22962200-22962219 | None:intergenic | 35.0% | |
| AGCAACAATATTTCTTCTGC+AGG | - | chr8.2:22963242-22963261 | None:intergenic | 35.0% | |
| AGGTAAACAACAATAAGTGG+AGG | - | chr8.2:22962718-22962737 | None:intergenic | 35.0% | |
| CAATTGTGATACAGAGGATA+TGG | + | chr8.2:22961039-22961058 | MS.gene61257:intron | 35.0% | |
| CTATTTGATGTCAAGAGGAA+GGG | + | chr8.2:22962599-22962618 | MS.gene61257:CDS | 35.0% | |
| GAGATATATCATATGACAGC+AGG | - | chr8.2:22961346-22961365 | None:intergenic | 35.0% | |
| GCATTTGGAAGAGCTTATTT+CGG | - | chr8.2:22962105-22962124 | None:intergenic | 35.0% | |
| GTGGTTCAATTGAAATTGCT+GGG | + | chr8.2:22961717-22961736 | MS.gene61257:intron | 35.0% | |
| TCTATTTGATGTCAAGAGGA+AGG | + | chr8.2:22962598-22962617 | MS.gene61257:CDS | 35.0% | |
| TGCAAACTGGCAATAACTTA+CGG | - | chr8.2:22961250-22961269 | None:intergenic | 35.0% | |
| TGTCAGACATCACCAAATAA+GGG | - | chr8.2:22963041-22963060 | None:intergenic | 35.0% | |
| TTAGCCTGTAATGTGATCAT+GGG | + | chr8.2:22962193-22962212 | MS.gene61257:intron | 35.0% | |
| TTTAGCCTGTAATGTGATCA+TGG | + | chr8.2:22962192-22962211 | MS.gene61257:intron | 35.0% | |
| ! | ATTTTCCTGCAGTCTCATTT+AGG | + | chr8.2:22962784-22962803 | MS.gene61257:intron | 35.0% |
| ! | CTAAGTGAACACTTTTGTTC+TGG | + | chr8.2:22962929-22962948 | MS.gene61257:intron | 35.0% |
| ! | CTCTATGATTTGCACAATAC+TGG | + | chr8.2:22962807-22962826 | MS.gene61257:CDS | 35.0% |
| ! | GAAAGAAAGCAACCTTTTCT+GGG | - | chr8.2:22961621-22961640 | None:intergenic | 35.0% |
| ! | GTCATGATTTTGAGCAATGA+AGG | - | chr8.2:22963399-22963418 | None:intergenic | 35.0% |
| ! | TATGTGCTGGACTATTTTCA+TGG | + | chr8.2:22963435-22963454 | MS.gene61257:intron | 35.0% |
| ! | TGAAAGAAAGCAACCTTTTC+TGG | - | chr8.2:22961622-22961641 | None:intergenic | 35.0% |
| ! | TGCTTTTCTTCTACTCATTG+CGG | + | chr8.2:22961434-22961453 | MS.gene61257:intron | 35.0% |
| ! | TTTCGAGTCTGAAATGAAGT+TGG | + | chr8.2:22963088-22963107 | MS.gene61257:CDS | 35.0% |
| !! | CAGAACAAAAGTGTTCACTT+AGG | - | chr8.2:22962931-22962950 | None:intergenic | 35.0% |
| !! | CATGAAGCATTGGAGATAAA+TGG | + | chr8.2:22961223-22961242 | MS.gene61257:intron | 35.0% |
| !! | TATCTGGATTAAGAGGCATT+TGG | - | chr8.2:22962120-22962139 | None:intergenic | 35.0% |
| !!! | CAAACGTGTCATTTTCATTG+AGG | - | chr8.2:22962880-22962899 | None:intergenic | 35.0% |
| !!! | GCTTTATTTTTCTCATCTCC+CGG | + | chr8.2:22962413-22962432 | MS.gene61257:intron | 35.0% |
| AACTGTTAACAAGGAGATGG+AGG | + | chr8.2:22961003-22961022 | MS.gene61257:intron | 40.0% | |
| AATAGTCCAGCACATACCTT+AGG | - | chr8.2:22963431-22963450 | None:intergenic | 40.0% | |
| ATATCATATGACAGCAGGTG+AGG | - | chr8.2:22961341-22961360 | None:intergenic | 40.0% | |
| CATGGGTATTCTTTCTTTGC+AGG | + | chr8.2:22962210-22962229 | MS.gene61257:intron | 40.0% | |
| CGTGATTCTTGCATCACAAA+CGG | + | chr8.2:22960734-22960753 | MS.gene61257:CDS | 40.0% | |
| CGTTTGTGATGCAAGAATCA+CGG | - | chr8.2:22960736-22960755 | None:intergenic | 40.0% | |
| CTGTCAGACATCACCAAATA+AGG | - | chr8.2:22963042-22963061 | None:intergenic | 40.0% | |
| GGTGGTTCAATTGAAATTGC+TGG | + | chr8.2:22961716-22961735 | MS.gene61257:intron | 40.0% | |
| GTTTGTGATGCAAGAATCAC+GGG | - | chr8.2:22960735-22960754 | None:intergenic | 40.0% | |
| TTGACAAATACTGGAGCCAT+AGG | - | chr8.2:22962372-22962391 | None:intergenic | 40.0% | |
| TTGTTAGAAGTAGGCAAAGG+TGG | + | chr8.2:22961293-22961312 | MS.gene61257:intron | 40.0% | |
| ! | AGCAGTTCTGTTGTTGATGA+TGG | + | chr8.2:22961938-22961957 | MS.gene61257:CDS | 40.0% |
| ! | GAACACTTTTGTTCTGGTCT+TGG | + | chr8.2:22962935-22962954 | MS.gene61257:intron | 40.0% |
| ! | TCTCAACATGGGCTATATGA+AGG | + | chr8.2:22961362-22961381 | MS.gene61257:intron | 40.0% |
| !! | CTTATTTGGTGATGTCTGAC+AGG | + | chr8.2:22963040-22963059 | MS.gene61257:intron | 40.0% |
| !! | GCAGTTCTGTTGTTGATGAT+GGG | + | chr8.2:22961939-22961958 | MS.gene61257:CDS | 40.0% |
| !! | TGATGATGGGCTAATAAGCA+AGG | + | chr8.2:22961952-22961971 | MS.gene61257:CDS | 40.0% |
| !! | TGTTGGTTCATTTGTTTCGG+TGG | + | chr8.2:22961698-22961717 | MS.gene61257:intron | 40.0% |
| !! | TTTTTCTGGCCAGACTTTCT+TGG | + | chr8.2:22963308-22963327 | MS.gene61257:intron | 40.0% |
| AAGACAGTATCCTGGGAAAG+AGG | + | chr8.2:22960707-22960726 | MS.gene61257:CDS | 45.0% | |
| AAGCCAACAAGACAGTATCC+TGG | + | chr8.2:22960699-22960718 | MS.gene61257:CDS | 45.0% | |
| AGAGCTTGTGACAACAGCTT+AGG | - | chr8.2:22962052-22962071 | None:intergenic | 45.0% | |
| AGCAATCATCATCTCACCTC+TGG | - | chr8.2:22962846-22962865 | None:intergenic | 45.0% | |
| AGCCAACAAGACAGTATCCT+GGG | + | chr8.2:22960700-22960719 | MS.gene61257:CDS | 45.0% | |
| AGGACACACAGATCAAAGTG+AGG | - | chr8.2:22962747-22962766 | None:intergenic | 45.0% | |
| AGTCAGCATCCAAGAAAGTC+TGG | - | chr8.2:22963320-22963339 | None:intergenic | 45.0% | |
| TAGAGCCTAAATGAGACTGC+AGG | - | chr8.2:22962792-22962811 | None:intergenic | 45.0% | |
| TCATGACACTTCCCTACCTA+AGG | + | chr8.2:22963412-22963431 | MS.gene61257:CDS | 45.0% | |
| TCCAGCACATACCTTAGGTA+GGG | - | chr8.2:22963426-22963445 | None:intergenic | 45.0% | |
| TTCCCAGGATACTGTCTTGT+TGG | - | chr8.2:22960705-22960724 | None:intergenic | 45.0% | |
| ! | CGAGTCTGAAATGAAGTTGG+CGG | + | chr8.2:22963091-22963110 | MS.gene61257:CDS | 45.0% |
| !! | GATGCTGACTTGAACCAAGA+TGG | + | chr8.2:22963330-22963349 | MS.gene61257:CDS | 45.0% |
| GCAAGCATGTCAACTGCCTA+TGG | + | chr8.2:22962353-22962372 | MS.gene61257:intron | 50.0% | |
| GGATTGTAGGCTGTTGCGAT+TGG | + | chr8.2:22960799-22960818 | MS.gene61257:intron | 50.0% | |
| GTCCAGCACATACCTTAGGT+AGG | - | chr8.2:22963427-22963446 | None:intergenic | 50.0% | |
| TCCCTACCTAAGGTATGTGC+TGG | + | chr8.2:22963422-22963441 | MS.gene61257:intron | 50.0% | |
| TGTCTTCTAGCGCTGCGTTT+GGG | - | chr8.2:22962670-22962689 | None:intergenic | 50.0% | |
| TTGTCTTCTAGCGCTGCGTT+TGG | - | chr8.2:22962671-22962690 | None:intergenic | 50.0% | |
| !! | TGGCTTTATAGAGCGTCCAG+AGG | + | chr8.2:22962827-22962846 | MS.gene61257:CDS | 50.0% |
| ATCACGGGATCCTCTTTCCC+AGG | - | chr8.2:22960720-22960739 | None:intergenic | 55.0% | |
| !! | GCAACCTTTTCTGGGTGTCG+TGG | - | chr8.2:22961613-22961632 | None:intergenic | 55.0% |
| CTTCTAGCGCTGCGTTTGGG+TGG | - | chr8.2:22962667-22962686 | None:intergenic | 60.0% | |
| GGCACCACGACACCCAGAAA+AGG | + | chr8.2:22961606-22961625 | MS.gene61257:intron | 60.0% | |
| !! | TGGGTGTCGTGGTGCCACAA+TGG | - | chr8.2:22961602-22961621 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 22960681 | 22963603 | 22960681 | ID=MS.gene61257 |
| chr8.2 | mRNA | 22960681 | 22963603 | 22960681 | ID=MS.gene61257.t1;Parent=MS.gene61257 |
| chr8.2 | exon | 22960681 | 22960759 | 22960681 | ID=MS.gene61257.t1.exon1;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22960681 | 22960759 | 22960681 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22961891 | 22961973 | 22961891 | ID=MS.gene61257.t1.exon2;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22961891 | 22961973 | 22961891 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22962232 | 22962291 | 22962232 | ID=MS.gene61257.t1.exon3;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22962232 | 22962291 | 22962232 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22962590 | 22962698 | 22962590 | ID=MS.gene61257.t1.exon4;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22962590 | 22962698 | 22962590 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22962796 | 22962848 | 22962796 | ID=MS.gene61257.t1.exon5;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22962796 | 22962848 | 22962796 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22963062 | 22963142 | 22963062 | ID=MS.gene61257.t1.exon6;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22963062 | 22963142 | 22963062 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22963321 | 22963433 | 22963321 | ID=MS.gene61257.t1.exon7;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22963321 | 22963433 | 22963321 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| chr8.2 | exon | 22963540 | 22963603 | 22963540 | ID=MS.gene61257.t1.exon8;Parent=MS.gene61257.t1 |
| chr8.2 | CDS | 22963540 | 22963603 | 22963540 | ID=cds.MS.gene61257.t1;Parent=MS.gene61257.t1 |
| Gene Sequence |
| Protein sequence |
