Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72376.t1 | XP_013457573.1 | 100 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 4.70E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72376.t1 | O81445 | 80.6 | 211 | 41 | 0 | 1 | 211 | 1 | 211 | 6.7e-92 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72376.t1 | A0A072UP32 | 100.0 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 3.4e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene72376 | 0.824132 | 9.53E-54 | -1.69E-46 |
| MS.gene049208 | MS.gene72376 | 0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene72376 | 0.801835 | 7.46E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene72376 | 0.815984 | 6.98E-52 | -1.69E-46 |
| MS.gene049680 | MS.gene72376 | 0.802879 | 4.55E-49 | -1.69E-46 |
| MS.gene050253 | MS.gene72376 | 0.806207 | 9.20E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene72376 | 0.808306 | 3.31E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene72376 | 0.80682 | 6.83E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene72376 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene72376 | 0.821409 | 4.10E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene72376 | 0.83072 | 2.50E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene72376 | 0.855395 | 6.49E-62 | -1.69E-46 |
| MS.gene051700 | MS.gene72376 | 0.810104 | 1.36E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene72376 | 0.824057 | 9.92E-54 | -1.69E-46 |
| MS.gene051902 | MS.gene72376 | 0.820504 | 6.62E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene72376 | 0.881305 | 2.68E-70 | -1.69E-46 |
| MS.gene052072 | MS.gene72376 | 0.804499 | 2.10E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene72376 | 0.819269 | 1.27E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene72376 | 0.819575 | 1.08E-52 | -1.69E-46 |
| MS.gene052888 | MS.gene72376 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene052889 | MS.gene72376 | 0.83541 | 1.71E-56 | -1.69E-46 |
| MS.gene052947 | MS.gene72376 | 0.81551 | 8.91E-52 | -1.69E-46 |
| MS.gene053045 | MS.gene72376 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene053094 | MS.gene72376 | 0.810274 | 1.25E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene72376 | 0.830733 | 2.49E-55 | -1.69E-46 |
| MS.gene053340 | MS.gene72376 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene053564 | MS.gene72376 | 0.807607 | 4.65E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene72376 | 0.815243 | 1.02E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene72376 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene72376 | 0.810436 | 1.15E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene72376 | 0.863173 | 3.01E-64 | -1.69E-46 |
| MS.gene05517 | MS.gene72376 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene72376 | 0.833632 | 4.77E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene72376 | 0.846939 | 1.58E-59 | -1.69E-46 |
| MS.gene055314 | MS.gene72376 | 0.814886 | 1.23E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene72376 | 0.835793 | 1.36E-56 | -1.69E-46 |
| MS.gene055603 | MS.gene72376 | 0.852622 | 4.09E-61 | -1.69E-46 |
| MS.gene056181 | MS.gene72376 | 0.80308 | 4.14E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene72376 | 0.812363 | 4.40E-51 | -1.69E-46 |
| MS.gene056638 | MS.gene72376 | 0.811633 | 6.35E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene72376 | 0.834137 | 3.57E-56 | -1.69E-46 |
| MS.gene056787 | MS.gene72376 | 0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene72376 | 0.89438 | 2.60E-75 | -1.69E-46 |
| MS.gene057102 | MS.gene72376 | 0.855906 | 4.61E-62 | -1.69E-46 |
| MS.gene057208 | MS.gene72376 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene72376 | -0.815122 | 1.09E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene72376 | 0.82173 | 3.46E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene72376 | 0.818207 | 2.21E-52 | -1.69E-46 |
| MS.gene059144 | MS.gene72376 | 0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene72376 | 0.827497 | 1.51E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene72376 | 0.832787 | 7.74E-56 | -1.69E-46 |
| MS.gene059360 | MS.gene72376 | 0.826312 | 2.91E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene72376 | -0.838987 | 2.07E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene72376 | 0.846123 | 2.65E-59 | -1.69E-46 |
| MS.gene060365 | MS.gene72376 | 0.833959 | 3.95E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene72376 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene72376 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene72376 | 0.825989 | 3.47E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene72376 | 0.837985 | 3.76E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene72376 | 0.812415 | 4.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72376 | MS.gene06712 | PPI |
| MS.gene72376 | MS.gene013594 | PPI |
| MS.gene61257 | MS.gene72376 | PPI |
| MS.gene011601 | MS.gene72376 | PPI |
| MS.gene72376 | MS.gene46392 | PPI |
| MS.gene72376 | MS.gene06931 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72376.t1 | MTR_4g099210 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 8.32e-155 | 427 |
| MS.gene72376.t1 | MTR_3g091440 | 64.455 | 211 | 74 | 1 | 1 | 210 | 1 | 211 | 5.72e-98 | 284 |
| MS.gene72376.t1 | MTR_5g013560 | 69.014 | 213 | 54 | 2 | 1 | 213 | 1 | 201 | 6.62e-98 | 283 |
| MS.gene72376.t1 | MTR_5g096420 | 63.333 | 210 | 77 | 0 | 1 | 210 | 16 | 225 | 1.70e-94 | 275 |
| MS.gene72376.t1 | MTR_3g060730 | 62.857 | 210 | 78 | 0 | 1 | 210 | 16 | 225 | 8.89e-94 | 273 |
| MS.gene72376.t1 | MTR_4g134250 | 61.611 | 211 | 80 | 1 | 1 | 210 | 16 | 226 | 1.18e-93 | 273 |
| MS.gene72376.t1 | MTR_3g060730 | 66.486 | 185 | 62 | 0 | 26 | 210 | 3 | 187 | 1.81e-87 | 256 |
| MS.gene72376.t1 | MTR_3g091440 | 64.021 | 189 | 68 | 0 | 22 | 210 | 24 | 212 | 9.73e-87 | 256 |
| MS.gene72376.t1 | MTR_8g099575 | 54.286 | 210 | 96 | 0 | 1 | 210 | 1 | 210 | 8.49e-86 | 253 |
| MS.gene72376.t1 | MTR_1g016430 | 60.000 | 210 | 79 | 1 | 2 | 206 | 36 | 245 | 5.01e-84 | 249 |
| MS.gene72376.t1 | MTR_2g027500 | 54.327 | 208 | 95 | 0 | 3 | 210 | 16 | 223 | 5.28e-80 | 238 |
| MS.gene72376.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 1 | 179 | 2.66e-79 | 235 |
| MS.gene72376.t1 | MTR_8g099570 | 53.333 | 210 | 95 | 1 | 1 | 210 | 46 | 252 | 1.15e-78 | 236 |
| MS.gene72376.t1 | MTR_8g027620 | 56.923 | 195 | 84 | 0 | 16 | 210 | 39 | 233 | 2.11e-78 | 237 |
| MS.gene72376.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 99 | 277 | 2.22e-78 | 236 |
| MS.gene72376.t1 | MTR_2g027440 | 54.369 | 206 | 92 | 1 | 5 | 210 | 25 | 228 | 2.58e-77 | 232 |
| MS.gene72376.t1 | MTR_2g027480 | 52.381 | 210 | 98 | 1 | 3 | 210 | 19 | 228 | 3.91e-76 | 229 |
| MS.gene72376.t1 | MTR_4g113505 | 59.239 | 184 | 75 | 0 | 27 | 210 | 6 | 189 | 3.81e-74 | 224 |
| MS.gene72376.t1 | MTR_3g091440 | 66.242 | 157 | 52 | 1 | 1 | 156 | 1 | 157 | 7.55e-72 | 216 |
| MS.gene72376.t1 | MTR_2g027520 | 54.922 | 193 | 87 | 0 | 21 | 213 | 41 | 233 | 1.06e-70 | 215 |
| MS.gene72376.t1 | MTR_8g016170 | 48.165 | 218 | 104 | 1 | 2 | 210 | 38 | 255 | 2.28e-66 | 205 |
| MS.gene72376.t1 | MTR_8g016170 | 47.264 | 201 | 97 | 1 | 2 | 193 | 19 | 219 | 4.52e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72376.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene72376.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene72376.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene72376.t1 | AT5G47100 | 78.873 | 213 | 45 | 0 | 1 | 213 | 1 | 213 | 1.81e-121 | 343 |
| MS.gene72376.t1 | AT4G17615 | 78.894 | 199 | 42 | 0 | 1 | 199 | 1 | 199 | 1.92e-112 | 322 |
| MS.gene72376.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene72376.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene72376.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene72376.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene72376.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene72376.t1 | AT4G26570 | 61.538 | 208 | 80 | 0 | 3 | 210 | 18 | 225 | 5.22e-92 | 269 |
| MS.gene72376.t1 | AT4G17615 | 80.000 | 160 | 32 | 0 | 54 | 213 | 12 | 171 | 1.99e-90 | 263 |
| MS.gene72376.t1 | AT4G26570 | 60.377 | 212 | 80 | 1 | 3 | 210 | 18 | 229 | 7.18e-90 | 264 |
| MS.gene72376.t1 | AT5G47100 | 79.114 | 158 | 33 | 0 | 1 | 158 | 1 | 158 | 1.92e-88 | 258 |
| MS.gene72376.t1 | AT5G24270 | 62.032 | 187 | 71 | 0 | 25 | 211 | 4 | 190 | 2.31e-83 | 246 |
| MS.gene72376.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 38 | 246 | 9.00e-80 | 239 |
| MS.gene72376.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene72376.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene72376.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene72376.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 48 | 256 | 1.63e-79 | 238 |
| MS.gene72376.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene72376.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene72376.t1 | AT1G64480 | 53.403 | 191 | 89 | 0 | 3 | 193 | 7 | 197 | 7.80e-73 | 219 |
| MS.gene72376.t1 | AT5G24270 | 59.259 | 162 | 66 | 0 | 50 | 211 | 7 | 168 | 3.52e-68 | 207 |
| MS.gene72376.t1 | AT4G01420 | 49.268 | 205 | 99 | 2 | 1 | 203 | 1 | 202 | 8.20e-63 | 194 |
| MS.gene72376.t1 | AT4G01420 | 49.231 | 195 | 94 | 2 | 1 | 193 | 1 | 192 | 3.28e-59 | 184 |
| MS.gene72376.t1 | AT4G26560 | 47.120 | 191 | 88 | 2 | 33 | 210 | 23 | 213 | 8.59e-58 | 182 |
| MS.gene72376.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene72376.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene72376.t1 | AT4G33000 | 51.299 | 154 | 74 | 1 | 3 | 155 | 38 | 191 | 1.20e-52 | 169 |
| MS.gene72376.t1 | AT4G33000 | 46.087 | 115 | 61 | 1 | 3 | 116 | 38 | 152 | 4.47e-31 | 111 |
Find 31 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGATTTGCACAATAC+TGG | 0.282366 | 8.3:+21436738 | MS.gene72376:CDS |
| TTCCCAGGATACTGTCTTGT+TGG | 0.314753 | 8.3:-21434632 | None:intergenic |
| TGTCTTCTAGCGCTGCGTTT+GGG | 0.352671 | 8.3:-21436598 | None:intergenic |
| TTGTCTTCTAGCGCTGCGTT+TGG | 0.360612 | 8.3:-21436599 | None:intergenic |
| AAGAAAATATCTTTGCAAAT+CGG | 0.363808 | 8.3:+21436200 | MS.gene72376:CDS |
| AGCAGTTCTGTTGTTGATGA+TGG | 0.399714 | 8.3:+21435869 | MS.gene72376:CDS |
| AGAAAATATCTTTGCAAATC+GGG | 0.419742 | 8.3:+21436201 | MS.gene72376:CDS |
| TTTGCAGGAAGAATTTCAAT+TGG | 0.442118 | 8.3:+21436156 | MS.gene72376:intron |
| TTAGAATTAAATACAAAACT+TGG | 0.466958 | 8.3:-21437490 | None:intergenic |
| CGAGTCTGAAATGAAGTTGG+CGG | 0.474982 | 8.3:+21437022 | MS.gene72376:CDS |
| CGTGATTCTTGCATCACAAA+CGG | 0.498006 | 8.3:+21434664 | MS.gene72376:CDS |
| TTTCGAGTCTGAAATGAAGT+TGG | 0.499107 | 8.3:+21437019 | MS.gene72376:CDS |
| TTGATCTATTTGATGTCAAG+AGG | 0.532385 | 8.3:+21436525 | MS.gene72376:CDS |
| AAGCCAACAAGACAGTATCC+TGG | 0.544762 | 8.3:+21434629 | MS.gene72376:CDS |
| TAGAATTAAATACAAAACTT+GGG | 0.546002 | 8.3:-21437489 | None:intergenic |
| ATCACGGGATCCTCTTTCCC+AGG | 0.546051 | 8.3:-21434647 | None:intergenic |
| AGCCAACAAGACAGTATCCT+GGG | 0.547133 | 8.3:+21434630 | MS.gene72376:CDS |
| AAGACAGTATCCTGGGAAAG+AGG | 0.548655 | 8.3:+21434637 | MS.gene72376:CDS |
| TCTATTTGATGTCAAGAGGA+AGG | 0.556268 | 8.3:+21436529 | MS.gene72376:CDS |
| TCATGACACTTCCCTACCTA+AGG | 0.559648 | 8.3:+21437343 | MS.gene72376:CDS |
| GATGCTGACTTGAACCAAGA+TGG | 0.561233 | 8.3:+21437261 | MS.gene72376:CDS |
| GTTTGTGATGCAAGAATCAC+GGG | 0.563182 | 8.3:-21434662 | None:intergenic |
| CTTCTAGCGCTGCGTTTGGG+TGG | 0.565868 | 8.3:-21436595 | None:intergenic |
| CGTTTGTGATGCAAGAATCA+CGG | 0.569128 | 8.3:-21434663 | None:intergenic |
| TCCAGGACATACCTTAGGTA+GGG | 0.569895 | 8.3:-21437354 | None:intergenic |
| GCAGTTCTGTTGTTGATGAT+GGG | 0.573252 | 8.3:+21435870 | MS.gene72376:CDS |
| CTATTTGATGTCAAGAGGAA+GGG | 0.597733 | 8.3:+21436530 | MS.gene72376:CDS |
| GTCCAGGACATACCTTAGGT+AGG | 0.617633 | 8.3:-21437355 | None:intergenic |
| TGATGATGGGCTAATAAGCA+AGG | 0.637084 | 8.3:+21435883 | MS.gene72376:CDS |
| GATAGAAACAATTCTAGACA+AGG | 0.686128 | 8.3:+21437052 | MS.gene72376:CDS |
| TGGCTTTATAGAGCGTCCAG+AGG | 0.712213 | 8.3:+21436758 | MS.gene72376:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGATAAAACTA+AGG | + | chr8.3:21434849-21434868 | MS.gene72376:intron | 10.0% |
| !! | AAAATTATATCAATGAAAAG+AGG | - | chr8.3:21436928-21436947 | None:intergenic | 15.0% |
| !! | ATTTCATATCTAATATTCTA+TGG | - | chr8.3:21437141-21437160 | None:intergenic | 15.0% |
| !! | GAAATGTAATAACTTAATAA+GGG | + | chr8.3:21435246-21435265 | MS.gene72376:intron | 15.0% |
| !! | TAGAATTAAATACAAAACTT+GGG | - | chr8.3:21437492-21437511 | None:intergenic | 15.0% |
| !! | TTAGAATTAAATACAAAACT+TGG | - | chr8.3:21437493-21437512 | None:intergenic | 15.0% |
| !! | TTCAAAATTGATGAAAATAT+TGG | + | chr8.3:21435039-21435058 | MS.gene72376:intron | 15.0% |
| !! | AAAAAAACAACCATGATATT+CGG | - | chr8.3:21435403-21435422 | None:intergenic | 20.0% |
| !! | AAAGAAGTTGTAAAAGAAAA+TGG | + | chr8.3:21435070-21435089 | MS.gene72376:intron | 20.0% |
| !! | AAATAAATAAGAAAGTTGCA+AGG | - | chr8.3:21436403-21436422 | None:intergenic | 20.0% |
| !! | AAGAAAATATCTTTGCAAAT+CGG | + | chr8.3:21436200-21436219 | MS.gene72376:CDS | 20.0% |
| !! | AATAAAAACATAACATTCAG+TGG | - | chr8.3:21436839-21436858 | None:intergenic | 20.0% |
| !! | AATAAGCTGAAAATAATCAA+TGG | + | chr8.3:21435951-21435970 | MS.gene72376:intron | 20.0% |
| !! | GGAAATGTAATAACTTAATA+AGG | + | chr8.3:21435245-21435264 | MS.gene72376:intron | 20.0% |
| !! | TGAACATCATAATCATAATA+TGG | - | chr8.3:21437413-21437432 | None:intergenic | 20.0% |
| !!! | AAAAAGTTATTTCACAAGAA+TGG | - | chr8.3:21436452-21436471 | None:intergenic | 20.0% |
| !!! | AAATAACTTTTTCAATTGAC+TGG | + | chr8.3:21436460-21436479 | MS.gene72376:intron | 20.0% |
| !!! | ATGTTTTCATATAGTAAACA+AGG | - | chr8.3:21434875-21434894 | None:intergenic | 20.0% |
| !!! | CAACTTTCTTATTTATTTCT+TGG | + | chr8.3:21436405-21436424 | MS.gene72376:intron | 20.0% |
| !!! | TAAAGAATATAATTGATAGC+AGG | - | chr8.3:21435471-21435490 | None:intergenic | 20.0% |
| !!! | TTGTTTTAAAACTGTTAACA+AGG | + | chr8.3:21434924-21434943 | MS.gene72376:intron | 20.0% |
| !!! | TTTGTGCATTTTTTTCATTT+TGG | + | chr8.3:21436076-21436095 | MS.gene72376:intron | 20.0% |
| !!! | TTTTGTATTTAATTCTAACG+TGG | + | chr8.3:21437495-21437514 | MS.gene72376:CDS | 20.0% |
| ! | AAAATGTTATCTGGATTAAG+AGG | - | chr8.3:21436058-21436077 | None:intergenic | 25.0% |
| ! | AAATGAAAAACATGAAGCAT+TGG | + | chr8.3:21435143-21435162 | MS.gene72376:intron | 25.0% |
| ! | AAATGCACAAAAATGTTATC+TGG | - | chr8.3:21436067-21436086 | None:intergenic | 25.0% |
| ! | AATCCCAAACATAATATATC+AGG | - | chr8.3:21436698-21436717 | None:intergenic | 25.0% |
| ! | AGAAAATATCTTTGCAAATC+GGG | + | chr8.3:21436201-21436220 | MS.gene72376:CDS | 25.0% |
| ! | ATTTCTATCTTCAAAGAAAC+CGG | - | chr8.3:21436366-21436385 | None:intergenic | 25.0% |
| ! | CATATGATATATCTCAACAT+GGG | + | chr8.3:21435282-21435301 | MS.gene72376:intron | 25.0% |
| ! | TCATATGATATATCTCAACA+TGG | + | chr8.3:21435281-21435300 | MS.gene72376:intron | 25.0% |
| ! | TGAAACCAAAATTTGATACA+CGG | - | chr8.3:21435801-21435820 | None:intergenic | 25.0% |
| ! | TGTCCTGATATATTATGTTT+GGG | + | chr8.3:21436692-21436711 | MS.gene72376:intron | 25.0% |
| ! | TGTTGAGATATATCATATGA+CGG | - | chr8.3:21435281-21435300 | None:intergenic | 25.0% |
| ! | TTAAGGTAAACAACAATAAG+TGG | - | chr8.3:21436652-21436671 | None:intergenic | 25.0% |
| ! | TTGCAGAGAACAAAAATTTA+TGG | - | chr8.3:21436268-21436287 | None:intergenic | 25.0% |
| !! | AATGGAAAATAATTGATAGC+AGG | - | chr8.3:21435515-21435534 | None:intergenic | 25.0% |
| !! | CATTTTCAGAAACAATGTTT+TGG | + | chr8.3:21435012-21435031 | MS.gene72376:intron | 25.0% |
| !! | CTATCAATTATTTTCCATTG+TGG | + | chr8.3:21435516-21435535 | MS.gene72376:intron | 25.0% |
| !! | TTTGAGTTTATATGCTTATG+AGG | + | chr8.3:21434767-21434786 | MS.gene72376:intron | 25.0% |
| !!! | TTATTTTTGTCATTGATGCA+GGG | + | chr8.3:21437450-21437469 | MS.gene72376:intron | 25.0% |
| !!! | TTTGGTTTTTTGTTAGAAGT+AGG | + | chr8.3:21435215-21435234 | MS.gene72376:intron | 25.0% |
| AAAATGTTTCCATCTTGTGA+TGG | + | chr8.3:21435717-21435736 | MS.gene72376:intron | 30.0% | |
| AACTCTGCATAAGAAATTGT+AGG | + | chr8.3:21435917-21435936 | MS.gene72376:intron | 30.0% | |
| AATGGTAGTTATTGGATTGT+AGG | + | chr8.3:21434716-21434735 | MS.gene72376:intron | 30.0% | |
| AATGTAAATTCACACTAAGC+AGG | - | chr8.3:21434794-21434813 | None:intergenic | 30.0% | |
| AATTTCTGACATCGTATCAA+TGG | - | chr8.3:21436490-21436509 | None:intergenic | 30.0% | |
| ACTATGAAGTTGACAAATAC+TGG | - | chr8.3:21436312-21436331 | None:intergenic | 30.0% | |
| ACTCTGCATAAGAAATTGTA+GGG | + | chr8.3:21435918-21435937 | MS.gene72376:intron | 30.0% | |
| ACTTCATAGTTTATACACCT+AGG | + | chr8.3:21436322-21436341 | MS.gene72376:intron | 30.0% | |
| AGATCAAAGTGAGGAATTTA+AGG | - | chr8.3:21436669-21436688 | None:intergenic | 30.0% | |
| AGATGAGAAAAATAAAGCCT+AGG | - | chr8.3:21436342-21436361 | None:intergenic | 30.0% | |
| AGTTGTAAAAGAAAATGGTG+AGG | + | chr8.3:21435075-21435094 | MS.gene72376:intron | 30.0% | |
| ATAACAAATCCATCACAAGA+TGG | - | chr8.3:21435729-21435748 | None:intergenic | 30.0% | |
| ATATACCATGAAAATAGTCC+AGG | - | chr8.3:21437374-21437393 | None:intergenic | 30.0% | |
| ATTCGTTTCTTTCAGTGAAA+TGG | + | chr8.3:21434698-21434717 | MS.gene72376:intron | 30.0% | |
| GAAAAATAGACATTGTTGAG+TGG | + | chr8.3:21437283-21437302 | MS.gene72376:CDS | 30.0% | |
| GAAAATGGTGAGGAATATAT+TGG | + | chr8.3:21435085-21435104 | MS.gene72376:intron | 30.0% | |
| GAAACAAAAATGAGACTTGT+TGG | + | chr8.3:21435612-21435631 | MS.gene72376:intron | 30.0% | |
| GAAACCAAAATTTGATACAC+GGG | - | chr8.3:21435800-21435819 | None:intergenic | 30.0% | |
| GATAGAAACAATTCTAGACA+AGG | + | chr8.3:21437052-21437071 | MS.gene72376:CDS | 30.0% | |
| GCTTAGTGTGAATTTACATT+TGG | + | chr8.3:21434794-21434813 | MS.gene72376:intron | 30.0% | |
| GTAAACTAAACCGAATATCA+TGG | + | chr8.3:21435390-21435409 | MS.gene72376:intron | 30.0% | |
| GTGTCCTGATATATTATGTT+TGG | + | chr8.3:21436691-21436710 | MS.gene72376:intron | 30.0% | |
| TAAAACTGTTAACAAGGAGA+TGG | + | chr8.3:21434930-21434949 | MS.gene72376:intron | 30.0% | |
| TAGTAACAATTGTGATACAG+AGG | + | chr8.3:21434963-21434982 | MS.gene72376:intron | 30.0% | |
| TTACGCACATTTACAAAACA+CGG | - | chr8.3:21435332-21435351 | None:intergenic | 30.0% | |
| TTCAGTGAAATGGTAGTTAT+TGG | + | chr8.3:21434708-21434727 | MS.gene72376:intron | 30.0% | |
| TTGATCTATTTGATGTCAAG+AGG | + | chr8.3:21436525-21436544 | MS.gene72376:CDS | 30.0% | |
| TTTCTATCTTCAAAGAAACC+GGG | - | chr8.3:21436365-21436384 | None:intergenic | 30.0% | |
| TTTGCAGGAAGAATTTCAAT+TGG | + | chr8.3:21436156-21436175 | MS.gene72376:intron | 30.0% | |
| ! | TAAACCCGTGTATCAAATTT+TGG | + | chr8.3:21435793-21435812 | MS.gene72376:intron | 30.0% |
| ! | TTTTTGTTAGAAGTAGGCAA+AGG | + | chr8.3:21435221-21435240 | MS.gene72376:intron | 30.0% |
| !! | ACTTGTTGGTTCATTTGTTT+CGG | + | chr8.3:21435626-21435645 | MS.gene72376:intron | 30.0% |
| !! | ATCTTGTGATGGATTTGTTA+TGG | + | chr8.3:21435728-21435747 | MS.gene72376:intron | 30.0% |
| !! | ATGAAGCATTGGAGATAAAT+GGG | + | chr8.3:21435154-21435173 | MS.gene72376:intron | 30.0% |
| !! | CAATGTCTATTTTTCCATCT+TGG | - | chr8.3:21437278-21437297 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTTCCCTTATT+TGG | + | chr8.3:21436957-21436976 | MS.gene72376:intron | 30.0% |
| !!! | AAACGTGTCATTTTCATTGA+GGG | - | chr8.3:21436810-21436829 | None:intergenic | 30.0% |
| !!! | AGTTAGACATTGCTTTTTTC+TGG | + | chr8.3:21437225-21437244 | MS.gene72376:intron | 30.0% |
| !!! | GTTATTTTTGTCATTGATGC+AGG | + | chr8.3:21437449-21437468 | MS.gene72376:intron | 30.0% |
| AACAATATTTCTTCTGCAGG+TGG | - | chr8.3:21437170-21437189 | None:intergenic | 35.0% | |
| AAGTGAACTGTATTGCAAAC+TGG | - | chr8.3:21435193-21435212 | None:intergenic | 35.0% | |
| AATACCCATGATCACATTAC+AGG | - | chr8.3:21436131-21436150 | None:intergenic | 35.0% | |
| AGCAACAATATTTCTTCTGC+AGG | - | chr8.3:21437173-21437192 | None:intergenic | 35.0% | |
| AGGTAAACAACAATAAGTGG+AGG | - | chr8.3:21436649-21436668 | None:intergenic | 35.0% | |
| CAATTGTGATACAGAGGATA+TGG | + | chr8.3:21434969-21434988 | MS.gene72376:intron | 35.0% | |
| CTATTTGATGTCAAGAGGAA+GGG | + | chr8.3:21436530-21436549 | MS.gene72376:CDS | 35.0% | |
| GCAATACAGTTCACTTTGTT+TGG | + | chr8.3:21435197-21435216 | MS.gene72376:intron | 35.0% | |
| GCATTTGGAAGAGCTTATTT+CGG | - | chr8.3:21436036-21436055 | None:intergenic | 35.0% | |
| GTGGTTCAATTGAAATTGCT+GGG | + | chr8.3:21435648-21435667 | MS.gene72376:intron | 35.0% | |
| TCTATTTGATGTCAAGAGGA+AGG | + | chr8.3:21436529-21436548 | MS.gene72376:CDS | 35.0% | |
| TGCAAACTGGCAATAACTTA+CGG | - | chr8.3:21435180-21435199 | None:intergenic | 35.0% | |
| TGTCAGACATCACCAAATAA+GGG | - | chr8.3:21436972-21436991 | None:intergenic | 35.0% | |
| TTAGCCTGTAATGTGATCAT+GGG | + | chr8.3:21436124-21436143 | MS.gene72376:intron | 35.0% | |
| TTTAGCCTGTAATGTGATCA+TGG | + | chr8.3:21436123-21436142 | MS.gene72376:intron | 35.0% | |
| ! | ATTTTCCTGCAGTCTCATTT+AGG | + | chr8.3:21436715-21436734 | MS.gene72376:intron | 35.0% |
| ! | CTAAGTGAACACTTTTGTTC+TGG | + | chr8.3:21436860-21436879 | MS.gene72376:intron | 35.0% |
| ! | CTCTATGATTTGCACAATAC+TGG | + | chr8.3:21436738-21436757 | MS.gene72376:CDS | 35.0% |
| ! | GAAAGAAAGCAACCTTTTCT+GGG | - | chr8.3:21435552-21435571 | None:intergenic | 35.0% |
| ! | GTCATGATTTTGAGCAATGA+AGG | - | chr8.3:21437330-21437349 | None:intergenic | 35.0% |
| ! | TATGTCCTGGACTATTTTCA+TGG | + | chr8.3:21437366-21437385 | MS.gene72376:intron | 35.0% |
| ! | TGAAAGAAAGCAACCTTTTC+TGG | - | chr8.3:21435553-21435572 | None:intergenic | 35.0% |
| ! | TGCTTTTCTTCTACTCATTG+CGG | + | chr8.3:21435365-21435384 | MS.gene72376:intron | 35.0% |
| ! | TTTCGAGTCTGAAATGAAGT+TGG | + | chr8.3:21437019-21437038 | MS.gene72376:CDS | 35.0% |
| !! | CAGAACAAAAGTGTTCACTT+AGG | - | chr8.3:21436862-21436881 | None:intergenic | 35.0% |
| !! | CATGAAGCATTGGAGATAAA+TGG | + | chr8.3:21435153-21435172 | MS.gene72376:intron | 35.0% |
| !! | TATCTGGATTAAGAGGCATT+TGG | - | chr8.3:21436051-21436070 | None:intergenic | 35.0% |
| !!! | CAAACGTGTCATTTTCATTG+AGG | - | chr8.3:21436811-21436830 | None:intergenic | 35.0% |
| !!! | GCTTTATTTTTCTCATCTCC+CGG | + | chr8.3:21436344-21436363 | MS.gene72376:intron | 35.0% |
| AACTGTTAACAAGGAGATGG+AGG | + | chr8.3:21434933-21434952 | MS.gene72376:intron | 40.0% | |
| AATAGTCCAGGACATACCTT+AGG | - | chr8.3:21437362-21437381 | None:intergenic | 40.0% | |
| AGAGCTTGTGACAACAACTT+AGG | - | chr8.3:21435983-21436002 | None:intergenic | 40.0% | |
| CATGGGTATTCTTTCTTTGC+AGG | + | chr8.3:21436141-21436160 | MS.gene72376:intron | 40.0% | |
| CGTGATTCTTGCATCACAAA+CGG | + | chr8.3:21434664-21434683 | MS.gene72376:CDS | 40.0% | |
| CGTTTGTGATGCAAGAATCA+CGG | - | chr8.3:21434666-21434685 | None:intergenic | 40.0% | |
| CTGTCAGACATCACCAAATA+AGG | - | chr8.3:21436973-21436992 | None:intergenic | 40.0% | |
| GAGATATATCATATGACGGC+AGG | - | chr8.3:21435277-21435296 | None:intergenic | 40.0% | |
| GGTGGTTCAATTGAAATTGC+TGG | + | chr8.3:21435647-21435666 | MS.gene72376:intron | 40.0% | |
| GTTTGTGATGCAAGAATCAC+GGG | - | chr8.3:21434665-21434684 | None:intergenic | 40.0% | |
| TTGACAAATACTGGAGCCAT+AGG | - | chr8.3:21436303-21436322 | None:intergenic | 40.0% | |
| TTGTTAGAAGTAGGCAAAGG+TGG | + | chr8.3:21435224-21435243 | MS.gene72376:intron | 40.0% | |
| ! | AGCAGTTCTGTTGTTGATGA+TGG | + | chr8.3:21435869-21435888 | MS.gene72376:CDS | 40.0% |
| ! | GAACACTTTTGTTCTGGTCT+TGG | + | chr8.3:21436866-21436885 | MS.gene72376:intron | 40.0% |
| ! | TCTCAACATGGGCTATATGA+AGG | + | chr8.3:21435293-21435312 | MS.gene72376:intron | 40.0% |
| !! | CTTATTTGGTGATGTCTGAC+AGG | + | chr8.3:21436971-21436990 | MS.gene72376:intron | 40.0% |
| !! | GCAGTTCTGTTGTTGATGAT+GGG | + | chr8.3:21435870-21435889 | MS.gene72376:CDS | 40.0% |
| !! | TGATGATGGGCTAATAAGCA+AGG | + | chr8.3:21435883-21435902 | MS.gene72376:CDS | 40.0% |
| !! | TGTTGGTTCATTTGTTTCGG+TGG | + | chr8.3:21435629-21435648 | MS.gene72376:intron | 40.0% |
| !! | TTTTTCTGGCCAGACTTTCT+TGG | + | chr8.3:21437239-21437258 | MS.gene72376:intron | 40.0% |
| AAGACAGTATCCTGGGAAAG+AGG | + | chr8.3:21434637-21434656 | MS.gene72376:CDS | 45.0% | |
| AAGCCAACAAGACAGTATCC+TGG | + | chr8.3:21434629-21434648 | MS.gene72376:CDS | 45.0% | |
| AGCAATCATCATCTCACCTC+TGG | - | chr8.3:21436777-21436796 | None:intergenic | 45.0% | |
| AGCCAACAAGACAGTATCCT+GGG | + | chr8.3:21434630-21434649 | MS.gene72376:CDS | 45.0% | |
| AGGACACACAGATCAAAGTG+AGG | - | chr8.3:21436678-21436697 | None:intergenic | 45.0% | |
| AGTCAGCATCCAAGAAAGTC+TGG | - | chr8.3:21437251-21437270 | None:intergenic | 45.0% | |
| ATATCATATGACGGCAGGTG+AGG | - | chr8.3:21435272-21435291 | None:intergenic | 45.0% | |
| TAGAGCCTAAATGAGACTGC+AGG | - | chr8.3:21436723-21436742 | None:intergenic | 45.0% | |
| TCATGACACTTCCCTACCTA+AGG | + | chr8.3:21437343-21437362 | MS.gene72376:CDS | 45.0% | |
| TCCAGGACATACCTTAGGTA+GGG | - | chr8.3:21437357-21437376 | None:intergenic | 45.0% | |
| TTCCCAGGATACTGTCTTGT+TGG | - | chr8.3:21434635-21434654 | None:intergenic | 45.0% | |
| ! | CGAGTCTGAAATGAAGTTGG+CGG | + | chr8.3:21437022-21437041 | MS.gene72376:CDS | 45.0% |
| !! | GATGCTGACTTGAACCAAGA+TGG | + | chr8.3:21437261-21437280 | MS.gene72376:CDS | 45.0% |
| GCAAGCATGTCAACTGCCTA+TGG | + | chr8.3:21436284-21436303 | MS.gene72376:intron | 50.0% | |
| GGATTGTAGGCTGTTGCGAT+TGG | + | chr8.3:21434729-21434748 | MS.gene72376:intron | 50.0% | |
| GTCCAGGACATACCTTAGGT+AGG | - | chr8.3:21437358-21437377 | None:intergenic | 50.0% | |
| TCCCTACCTAAGGTATGTCC+TGG | + | chr8.3:21437353-21437372 | MS.gene72376:intron | 50.0% | |
| TGTCTTCTAGCGCTGCGTTT+GGG | - | chr8.3:21436601-21436620 | None:intergenic | 50.0% | |
| TTGTCTTCTAGCGCTGCGTT+TGG | - | chr8.3:21436602-21436621 | None:intergenic | 50.0% | |
| !! | TGGCTTTATAGAGCGTCCAG+AGG | + | chr8.3:21436758-21436777 | MS.gene72376:CDS | 50.0% |
| ATCACGGGATCCTCTTTCCC+AGG | - | chr8.3:21434650-21434669 | None:intergenic | 55.0% | |
| !! | GCAACCTTTTCTGGGTGTCG+TGG | - | chr8.3:21435544-21435563 | None:intergenic | 55.0% |
| CTTCTAGCGCTGCGTTTGGG+TGG | - | chr8.3:21436598-21436617 | None:intergenic | 60.0% | |
| GGCACCACGACACCCAGAAA+AGG | + | chr8.3:21435537-21435556 | MS.gene72376:intron | 60.0% | |
| !! | TGGGTGTCGTGGTGCCACAA+TGG | - | chr8.3:21435533-21435552 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 21434611 | 21437534 | 21434611 | ID=MS.gene72376 |
| chr8.3 | mRNA | 21434611 | 21437534 | 21434611 | ID=MS.gene72376.t1;Parent=MS.gene72376 |
| chr8.3 | exon | 21434611 | 21434689 | 21434611 | ID=MS.gene72376.t1.exon1;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21434611 | 21434689 | 21434611 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21435822 | 21435904 | 21435822 | ID=MS.gene72376.t1.exon2;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21435822 | 21435904 | 21435822 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21436163 | 21436222 | 21436163 | ID=MS.gene72376.t1.exon3;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21436163 | 21436222 | 21436163 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21436521 | 21436629 | 21436521 | ID=MS.gene72376.t1.exon4;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21436521 | 21436629 | 21436521 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21436727 | 21436779 | 21436727 | ID=MS.gene72376.t1.exon5;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21436727 | 21436779 | 21436727 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21436993 | 21437073 | 21436993 | ID=MS.gene72376.t1.exon6;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21436993 | 21437073 | 21436993 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21437252 | 21437364 | 21437252 | ID=MS.gene72376.t1.exon7;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21437252 | 21437364 | 21437252 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| chr8.3 | exon | 21437471 | 21437534 | 21437471 | ID=MS.gene72376.t1.exon8;Parent=MS.gene72376.t1 |
| chr8.3 | CDS | 21437471 | 21437534 | 21437471 | ID=cds.MS.gene72376.t1;Parent=MS.gene72376.t1 |
| Gene Sequence |
| Protein sequence |
