Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46392.t1 | XP_013457573.1 | 100 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 4.70E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46392.t1 | O81445 | 80.6 | 211 | 41 | 0 | 1 | 211 | 1 | 211 | 6.7e-92 | 338.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46392.t1 | A0A072UP32 | 100.0 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 3.4e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049208 | MS.gene46392 | 0.839351 | 1.67E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene46392 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene049674 | MS.gene46392 | 0.801006 | 1.10E-48 | -1.69E-46 |
| MS.gene050114 | MS.gene46392 | 0.819378 | 1.20E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene46392 | 0.806394 | 8.40E-50 | -1.69E-46 |
| MS.gene050288 | MS.gene46392 | 0.830829 | 2.36E-55 | -1.69E-46 |
| MS.gene050317 | MS.gene46392 | 0.847972 | 8.25E-60 | -1.69E-46 |
| MS.gene050320 | MS.gene46392 | 0.81944 | 1.16E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene46392 | 0.828308 | 9.66E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene46392 | 0.840103 | 1.06E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene46392 | 0.80888 | 2.49E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene46392 | 0.820103 | 8.19E-53 | -1.69E-46 |
| MS.gene051245 | MS.gene46392 | 0.812566 | 3.97E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene46392 | 0.819858 | 9.31E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene46392 | 0.845147 | 4.87E-59 | -1.69E-46 |
| MS.gene051746 | MS.gene46392 | 0.832384 | 9.75E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene46392 | 0.846423 | 2.19E-59 | -1.69E-46 |
| MS.gene051756 | MS.gene46392 | 0.835759 | 1.39E-56 | -1.69E-46 |
| MS.gene051757 | MS.gene46392 | 0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene46392 | 0.807829 | 4.18E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene46392 | 0.811738 | 6.02E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene46392 | 0.848206 | 7.10E-60 | -1.69E-46 |
| MS.gene051975 | MS.gene46392 | 0.850614 | 1.51E-60 | -1.69E-46 |
| MS.gene052296 | MS.gene46392 | 0.803405 | 3.54E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene46392 | 0.83523 | 1.89E-56 | -1.69E-46 |
| MS.gene052527 | MS.gene46392 | 0.827599 | 1.43E-54 | -1.69E-46 |
| MS.gene052818 | MS.gene46392 | -0.812141 | 4.92E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene46392 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene46392 | 0.830547 | 2.76E-55 | -1.69E-46 |
| MS.gene053359 | MS.gene46392 | 0.806542 | 7.82E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene46392 | 0.80728 | 5.46E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene46392 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene46392 | 0.852134 | 5.63E-61 | -1.69E-46 |
| MS.gene054403 | MS.gene46392 | 0.826063 | 3.33E-54 | -1.69E-46 |
| MS.gene05469 | MS.gene46392 | 0.87092 | 1.01E-66 | -1.69E-46 |
| MS.gene055311 | MS.gene46392 | 0.850234 | 1.94E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene46392 | 0.846016 | 2.83E-59 | -1.69E-46 |
| MS.gene055314 | MS.gene46392 | 0.842342 | 2.74E-58 | -1.69E-46 |
| MS.gene055603 | MS.gene46392 | 0.854559 | 1.14E-61 | -1.69E-46 |
| MS.gene056181 | MS.gene46392 | 0.815417 | 9.35E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene46392 | 0.817319 | 3.51E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene46392 | 0.820606 | 6.28E-53 | -1.69E-46 |
| MS.gene056764 | MS.gene46392 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene46392 | 0.835415 | 1.70E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene46392 | 0.855714 | 5.24E-62 | -1.69E-46 |
| MS.gene056992 | MS.gene46392 | 0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene46392 | 0.845946 | 2.96E-59 | -1.69E-46 |
| MS.gene057234 | MS.gene46392 | 0.831579 | 1.54E-55 | -1.69E-46 |
| MS.gene057360 | MS.gene46392 | 0.803511 | 3.37E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene46392 | 0.820093 | 8.23E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene46392 | 0.856389 | 3.33E-62 | -1.69E-46 |
| MS.gene058074 | MS.gene46392 | 0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene46392 | 0.812362 | 4.41E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene46392 | 0.812608 | 3.89E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene46392 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene46392 | 0.842561 | 2.40E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene46392 | 0.81614 | 6.45E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene46392 | 0.810034 | 1.41E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene46392 | 0.842917 | 1.93E-58 | -1.69E-46 |
| MS.gene06010 | MS.gene46392 | 0.80213 | 6.49E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene46392 | 0.86519 | 7.07E-65 | -1.69E-46 |
| MS.gene060763 | MS.gene46392 | 0.835202 | 1.92E-56 | -1.69E-46 |
| MS.gene060869 | MS.gene46392 | 0.831085 | 2.04E-55 | -1.69E-46 |
| MS.gene060870 | MS.gene46392 | 0.813185 | 2.91E-51 | -1.69E-46 |
| MS.gene061145 | MS.gene46392 | 0.800689 | 1.28E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61257 | MS.gene46392 | PPI |
| MS.gene011601 | MS.gene46392 | PPI |
| MS.gene013594 | MS.gene46392 | PPI |
| MS.gene06712 | MS.gene46392 | PPI |
| MS.gene06931 | MS.gene46392 | PPI |
| MS.gene72376 | MS.gene46392 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46392.t1 | MTR_4g099210 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 8.32e-155 | 427 |
| MS.gene46392.t1 | MTR_3g091440 | 64.455 | 211 | 74 | 1 | 1 | 210 | 1 | 211 | 5.72e-98 | 284 |
| MS.gene46392.t1 | MTR_5g013560 | 69.014 | 213 | 54 | 2 | 1 | 213 | 1 | 201 | 6.62e-98 | 283 |
| MS.gene46392.t1 | MTR_5g096420 | 63.333 | 210 | 77 | 0 | 1 | 210 | 16 | 225 | 1.70e-94 | 275 |
| MS.gene46392.t1 | MTR_3g060730 | 62.857 | 210 | 78 | 0 | 1 | 210 | 16 | 225 | 8.89e-94 | 273 |
| MS.gene46392.t1 | MTR_4g134250 | 61.611 | 211 | 80 | 1 | 1 | 210 | 16 | 226 | 1.18e-93 | 273 |
| MS.gene46392.t1 | MTR_3g060730 | 66.486 | 185 | 62 | 0 | 26 | 210 | 3 | 187 | 1.81e-87 | 256 |
| MS.gene46392.t1 | MTR_3g091440 | 64.021 | 189 | 68 | 0 | 22 | 210 | 24 | 212 | 9.73e-87 | 256 |
| MS.gene46392.t1 | MTR_8g099575 | 54.286 | 210 | 96 | 0 | 1 | 210 | 1 | 210 | 8.49e-86 | 253 |
| MS.gene46392.t1 | MTR_1g016430 | 60.000 | 210 | 79 | 1 | 2 | 206 | 36 | 245 | 5.01e-84 | 249 |
| MS.gene46392.t1 | MTR_2g027500 | 54.327 | 208 | 95 | 0 | 3 | 210 | 16 | 223 | 5.28e-80 | 238 |
| MS.gene46392.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 1 | 179 | 2.66e-79 | 235 |
| MS.gene46392.t1 | MTR_8g099570 | 53.333 | 210 | 95 | 1 | 1 | 210 | 46 | 252 | 1.15e-78 | 236 |
| MS.gene46392.t1 | MTR_8g027620 | 56.923 | 195 | 84 | 0 | 16 | 210 | 39 | 233 | 2.11e-78 | 237 |
| MS.gene46392.t1 | MTR_1g016430 | 64.246 | 179 | 64 | 0 | 28 | 206 | 99 | 277 | 2.22e-78 | 236 |
| MS.gene46392.t1 | MTR_2g027440 | 54.369 | 206 | 92 | 1 | 5 | 210 | 25 | 228 | 2.58e-77 | 232 |
| MS.gene46392.t1 | MTR_2g027480 | 52.381 | 210 | 98 | 1 | 3 | 210 | 19 | 228 | 3.91e-76 | 229 |
| MS.gene46392.t1 | MTR_4g113505 | 59.239 | 184 | 75 | 0 | 27 | 210 | 6 | 189 | 3.81e-74 | 224 |
| MS.gene46392.t1 | MTR_3g091440 | 66.242 | 157 | 52 | 1 | 1 | 156 | 1 | 157 | 7.55e-72 | 216 |
| MS.gene46392.t1 | MTR_2g027520 | 54.922 | 193 | 87 | 0 | 21 | 213 | 41 | 233 | 1.06e-70 | 215 |
| MS.gene46392.t1 | MTR_8g016170 | 48.165 | 218 | 104 | 1 | 2 | 210 | 38 | 255 | 2.28e-66 | 205 |
| MS.gene46392.t1 | MTR_8g016170 | 47.264 | 201 | 97 | 1 | 2 | 193 | 19 | 219 | 4.52e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46392.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene46392.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene46392.t1 | AT4G17615 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.13e-123 | 348 |
| MS.gene46392.t1 | AT5G47100 | 78.873 | 213 | 45 | 0 | 1 | 213 | 1 | 213 | 1.81e-121 | 343 |
| MS.gene46392.t1 | AT4G17615 | 78.894 | 199 | 42 | 0 | 1 | 199 | 1 | 199 | 1.92e-112 | 322 |
| MS.gene46392.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene46392.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene46392.t1 | AT5G24270 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.01e-92 | 270 |
| MS.gene46392.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene46392.t1 | AT5G55990 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 3.84e-92 | 269 |
| MS.gene46392.t1 | AT4G26570 | 61.538 | 208 | 80 | 0 | 3 | 210 | 18 | 225 | 5.22e-92 | 269 |
| MS.gene46392.t1 | AT4G17615 | 80.000 | 160 | 32 | 0 | 54 | 213 | 12 | 171 | 1.99e-90 | 263 |
| MS.gene46392.t1 | AT4G26570 | 60.377 | 212 | 80 | 1 | 3 | 210 | 18 | 229 | 7.18e-90 | 264 |
| MS.gene46392.t1 | AT5G47100 | 79.114 | 158 | 33 | 0 | 1 | 158 | 1 | 158 | 1.92e-88 | 258 |
| MS.gene46392.t1 | AT5G24270 | 62.032 | 187 | 71 | 0 | 25 | 211 | 4 | 190 | 2.31e-83 | 246 |
| MS.gene46392.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 38 | 246 | 9.00e-80 | 239 |
| MS.gene46392.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene46392.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene46392.t1 | AT1G64480 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 9.64e-80 | 238 |
| MS.gene46392.t1 | AT4G33000 | 53.589 | 209 | 96 | 1 | 3 | 210 | 48 | 256 | 1.63e-79 | 238 |
| MS.gene46392.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene46392.t1 | AT4G16350 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.25e-73 | 222 |
| MS.gene46392.t1 | AT1G64480 | 53.403 | 191 | 89 | 0 | 3 | 193 | 7 | 197 | 7.80e-73 | 219 |
| MS.gene46392.t1 | AT5G24270 | 59.259 | 162 | 66 | 0 | 50 | 211 | 7 | 168 | 3.52e-68 | 207 |
| MS.gene46392.t1 | AT4G01420 | 49.268 | 205 | 99 | 2 | 1 | 203 | 1 | 202 | 8.20e-63 | 194 |
| MS.gene46392.t1 | AT4G01420 | 49.231 | 195 | 94 | 2 | 1 | 193 | 1 | 192 | 3.28e-59 | 184 |
| MS.gene46392.t1 | AT4G26560 | 47.120 | 191 | 88 | 2 | 33 | 210 | 23 | 213 | 8.59e-58 | 182 |
| MS.gene46392.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene46392.t1 | AT4G33000 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.19e-53 | 168 |
| MS.gene46392.t1 | AT4G33000 | 51.299 | 154 | 74 | 1 | 3 | 155 | 38 | 191 | 1.20e-52 | 169 |
| MS.gene46392.t1 | AT4G33000 | 46.087 | 115 | 61 | 1 | 3 | 116 | 38 | 152 | 4.47e-31 | 111 |
Find 30 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGATTTGCACAATAC+TGG | 0.282366 | 8.4:+23784121 | MS.gene46392:CDS |
| TTCCCAGGATACTGTCTTGT+TGG | 0.314753 | 8.4:-23782011 | None:intergenic |
| TGTCTTCTAGCGCTGCGTTT+GGG | 0.352671 | 8.4:-23783981 | None:intergenic |
| TTGTCTTCTAGCGCTGCGTT+TGG | 0.360612 | 8.4:-23783982 | None:intergenic |
| AAGAAAATATCTTTGCAAAT+CGG | 0.363808 | 8.4:+23783583 | MS.gene46392:CDS |
| AGCAGTTCTGTTGTTGATGA+TGG | 0.399714 | 8.4:+23783252 | MS.gene46392:CDS |
| AGAAAATATCTTTGCAAATC+GGG | 0.419742 | 8.4:+23783584 | MS.gene46392:CDS |
| TTTGCAGGAAGAATTTCAAT+TGG | 0.442118 | 8.4:+23783539 | MS.gene46392:intron |
| TTAGAATTAAATACAAAACT+TGG | 0.466958 | 8.4:-23784873 | None:intergenic |
| CGAGTCTGAAATGAAGTTGG+CGG | 0.474982 | 8.4:+23784405 | MS.gene46392:CDS |
| TTTCGAGTCTGAAATGAAGT+TGG | 0.499107 | 8.4:+23784402 | MS.gene46392:CDS |
| TTGATCTATTTGATGTCAAG+AGG | 0.532385 | 8.4:+23783908 | MS.gene46392:CDS |
| GTCTGTGATGCAAGAATCAC+GGG | 0.534660 | 8.4:-23782041 | None:intergenic |
| AAGCCAACAAGACAGTATCC+TGG | 0.544762 | 8.4:+23782008 | MS.gene46392:CDS |
| TAGAATTAAATACAAAACTT+GGG | 0.546002 | 8.4:-23784872 | None:intergenic |
| ATCACGGGATCCTCTTTCCC+AGG | 0.546051 | 8.4:-23782026 | None:intergenic |
| AGCCAACAAGACAGTATCCT+GGG | 0.547133 | 8.4:+23782009 | MS.gene46392:CDS |
| AAGACAGTATCCTGGGAAAG+AGG | 0.548655 | 8.4:+23782016 | MS.gene46392:CDS |
| TCTATTTGATGTCAAGAGGA+AGG | 0.556268 | 8.4:+23783912 | MS.gene46392:CDS |
| TCATGACACTTCCCTACCTA+AGG | 0.559648 | 8.4:+23784726 | MS.gene46392:CDS |
| GATGCTGACTTGAACCAAGA+TGG | 0.561233 | 8.4:+23784644 | MS.gene46392:CDS |
| CTTCTAGCGCTGCGTTTGGG+TGG | 0.565868 | 8.4:-23783978 | None:intergenic |
| GCAGTTCTGTTGTTGATGAT+GGG | 0.573252 | 8.4:+23783253 | MS.gene46392:CDS |
| TCCAGCACATACCTTAGGTA+GGG | 0.591653 | 8.4:-23784737 | None:intergenic |
| AGTCTGTGATGCAAGAATCA+CGG | 0.593687 | 8.4:-23782042 | None:intergenic |
| CTATTTGATGTCAAGAGGAA+GGG | 0.597733 | 8.4:+23783913 | MS.gene46392:CDS |
| GTCCAGCACATACCTTAGGT+AGG | 0.611062 | 8.4:-23784738 | None:intergenic |
| TGATGATGGGCTAATAAGCA+AGG | 0.637084 | 8.4:+23783266 | MS.gene46392:CDS |
| GATAGAAACAATTCTAGACA+AGG | 0.686128 | 8.4:+23784435 | MS.gene46392:CDS |
| TGGCTTTATAGAGCGTCCAG+AGG | 0.712213 | 8.4:+23784141 | MS.gene46392:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGATAAAACTA+AGG | + | chr8.4:23782231-23782250 | MS.gene46392:intron | 10.0% |
| !! | AAAATTATATCAATGAAAAG+AGG | - | chr8.4:23784311-23784330 | None:intergenic | 15.0% |
| !! | ATTTCATATCTAATATTCTA+TGG | - | chr8.4:23784524-23784543 | None:intergenic | 15.0% |
| !! | GAAATGTAATAACTTAATAA+GGG | + | chr8.4:23782629-23782648 | MS.gene46392:intron | 15.0% |
| !! | TAGAATTAAATACAAAACTT+GGG | - | chr8.4:23784875-23784894 | None:intergenic | 15.0% |
| !! | TTAGAATTAAATACAAAACT+TGG | - | chr8.4:23784876-23784895 | None:intergenic | 15.0% |
| !! | TTCAAAATTGATGAAAATAT+TGG | + | chr8.4:23782421-23782440 | MS.gene46392:intron | 15.0% |
| !! | AAAAAAACAACCATGATATT+CGG | - | chr8.4:23782786-23782805 | None:intergenic | 20.0% |
| !! | AAAGAAGTTGTAAAAGAAAA+TGG | + | chr8.4:23782452-23782471 | MS.gene46392:intron | 20.0% |
| !! | AAATAAATAAGAAAGTTGCA+AGG | - | chr8.4:23783786-23783805 | None:intergenic | 20.0% |
| !! | AAGAAAATATCTTTGCAAAT+CGG | + | chr8.4:23783583-23783602 | MS.gene46392:CDS | 20.0% |
| !! | AATAAAAACATAACATTCAG+TGG | - | chr8.4:23784222-23784241 | None:intergenic | 20.0% |
| !! | AATAAGCTGAAAATAATCAA+TGG | + | chr8.4:23783334-23783353 | MS.gene46392:intron | 20.0% |
| !! | GGAAATGTAATAACTTAATA+AGG | + | chr8.4:23782628-23782647 | MS.gene46392:intron | 20.0% |
| !! | TGAACATCATAATCATAATA+TGG | - | chr8.4:23784796-23784815 | None:intergenic | 20.0% |
| !!! | AAAAAGTTATTTCACAAGAA+TGG | - | chr8.4:23783835-23783854 | None:intergenic | 20.0% |
| !!! | AAATAACTTTTTCAATTGAC+TGG | + | chr8.4:23783843-23783862 | MS.gene46392:intron | 20.0% |
| !!! | ATGTTTTCATATAGTAAACA+AGG | - | chr8.4:23782257-23782276 | None:intergenic | 20.0% |
| !!! | CAACTTTCTTATTTATTTCT+TGG | + | chr8.4:23783788-23783807 | MS.gene46392:intron | 20.0% |
| !!! | CTTTAATTTTGTGTAGTTAT+TGG | + | chr8.4:23782090-23782109 | MS.gene46392:intron | 20.0% |
| !!! | TAAAGAATATAATTGATAGC+AGG | - | chr8.4:23782854-23782873 | None:intergenic | 20.0% |
| !!! | TTGTGCATTTTTTTCATTTT+GGG | + | chr8.4:23783460-23783479 | MS.gene46392:intron | 20.0% |
| !!! | TTGTTTTAAAACTGTTAACA+AGG | + | chr8.4:23782306-23782325 | MS.gene46392:intron | 20.0% |
| !!! | TTTGTGCATTTTTTTCATTT+TGG | + | chr8.4:23783459-23783478 | MS.gene46392:intron | 20.0% |
| !!! | TTTTGTATTTAATTCTAACG+TGG | + | chr8.4:23784878-23784897 | MS.gene46392:CDS | 20.0% |
| ! | AAAAAAGCAATGTCTAACTA+AGG | - | chr8.4:23784607-23784626 | None:intergenic | 25.0% |
| ! | AAAATGTTATCTGGATTAAG+AGG | - | chr8.4:23783441-23783460 | None:intergenic | 25.0% |
| ! | AAATGAAAAACATGAAGCAT+TGG | + | chr8.4:23782525-23782544 | MS.gene46392:intron | 25.0% |
| ! | AAATGCACAAAAATGTTATC+TGG | - | chr8.4:23783450-23783469 | None:intergenic | 25.0% |
| ! | AATCCCAAACATAATATATC+AGG | - | chr8.4:23784081-23784100 | None:intergenic | 25.0% |
| ! | AATGTAAATTCACAATAAGC+AGG | - | chr8.4:23782176-23782195 | None:intergenic | 25.0% |
| ! | AGAAAATATCTTTGCAAATC+GGG | + | chr8.4:23783584-23783603 | MS.gene46392:CDS | 25.0% |
| ! | ATCCCAAACATAATATATCA+GGG | - | chr8.4:23784080-23784099 | None:intergenic | 25.0% |
| ! | ATTTCTATCTTCAAAGAAAC+CGG | - | chr8.4:23783749-23783768 | None:intergenic | 25.0% |
| ! | CATATGATATATCTCAACAT+GGG | + | chr8.4:23782665-23782684 | MS.gene46392:intron | 25.0% |
| ! | GCTTATTGTGAATTTACATT+TGG | + | chr8.4:23782176-23782195 | MS.gene46392:intron | 25.0% |
| ! | TCATATGATATATCTCAACA+TGG | + | chr8.4:23782664-23782683 | MS.gene46392:intron | 25.0% |
| ! | TGAAACCAAAATTTGATACA+CGG | - | chr8.4:23783184-23783203 | None:intergenic | 25.0% |
| ! | TTAAGGTAAACAACAATAAG+TGG | - | chr8.4:23784035-23784054 | None:intergenic | 25.0% |
| ! | TTGCAGAGAACAAAAATTTA+TGG | - | chr8.4:23783651-23783670 | None:intergenic | 25.0% |
| !! | AATGGAAAATAATTGATAGC+AGG | - | chr8.4:23782898-23782917 | None:intergenic | 25.0% |
| !! | CATTTTCAGAAACAATGTTT+TGG | + | chr8.4:23782394-23782413 | MS.gene46392:intron | 25.0% |
| !! | CTATCAATTATTTTCCATTG+TGG | + | chr8.4:23782899-23782918 | MS.gene46392:intron | 25.0% |
| !! | TTTGAGTTTATATGCTTATG+AGG | + | chr8.4:23782149-23782168 | MS.gene46392:intron | 25.0% |
| !!! | TTATTTTTGTCATTGATGCA+GGG | + | chr8.4:23784833-23784852 | MS.gene46392:intron | 25.0% |
| !!! | TTGGTTTTTTTGTTAGAAGT+AGG | + | chr8.4:23782598-23782617 | MS.gene46392:intron | 25.0% |
| AAAATGTTTCCATCTTGTGA+TGG | + | chr8.4:23783100-23783119 | MS.gene46392:intron | 30.0% | |
| AACTCTGCATAAGAAATTGT+AGG | + | chr8.4:23783300-23783319 | MS.gene46392:intron | 30.0% | |
| AATTTCTGACATCGTATCAA+TGG | - | chr8.4:23783873-23783892 | None:intergenic | 30.0% | |
| ACTATGAAGTTGACAAATAC+TGG | - | chr8.4:23783695-23783714 | None:intergenic | 30.0% | |
| ACTCTGCATAAGAAATTGTA+GGG | + | chr8.4:23783301-23783320 | MS.gene46392:intron | 30.0% | |
| ACTTCATAGTTTATACACCT+AGG | + | chr8.4:23783705-23783724 | MS.gene46392:intron | 30.0% | |
| AGATCAAAGTGAGGAATTTA+AGG | - | chr8.4:23784052-23784071 | None:intergenic | 30.0% | |
| AGATGAGAAAAATAAAGCCT+AGG | - | chr8.4:23783725-23783744 | None:intergenic | 30.0% | |
| AGTTGTAAAAGAAAATGGTG+AGG | + | chr8.4:23782457-23782476 | MS.gene46392:intron | 30.0% | |
| ATAACAAATCCATCACAAGA+TGG | - | chr8.4:23783112-23783131 | None:intergenic | 30.0% | |
| GAAAAATAGACATTGTTGAG+TGG | + | chr8.4:23784666-23784685 | MS.gene46392:CDS | 30.0% | |
| GAAAATGGTGAGGAATATAT+TGG | + | chr8.4:23782467-23782486 | MS.gene46392:intron | 30.0% | |
| GAAACAAAAATGAGACTTGT+TGG | + | chr8.4:23782995-23783014 | MS.gene46392:intron | 30.0% | |
| GAAACCAAAATTTGATACAC+GGG | - | chr8.4:23783183-23783202 | None:intergenic | 30.0% | |
| GATAGAAACAATTCTAGACA+AGG | + | chr8.4:23784435-23784454 | MS.gene46392:CDS | 30.0% | |
| GTAAACTAAACCGAATATCA+TGG | + | chr8.4:23782773-23782792 | MS.gene46392:intron | 30.0% | |
| TAAAACTGTTAACAAGGAGA+TGG | + | chr8.4:23782312-23782331 | MS.gene46392:intron | 30.0% | |
| TAGTAACAATTGTGATACAG+AGG | + | chr8.4:23782345-23782364 | MS.gene46392:intron | 30.0% | |
| TGCCCTGATATATTATGTTT+GGG | + | chr8.4:23784075-23784094 | MS.gene46392:intron | 30.0% | |
| TTACGCACATTTACAAAACA+CGG | - | chr8.4:23782715-23782734 | None:intergenic | 30.0% | |
| TTGATCTATTTGATGTCAAG+AGG | + | chr8.4:23783908-23783927 | MS.gene46392:CDS | 30.0% | |
| TTGTGTAGTTATTGGATTGT+GGG | + | chr8.4:23782098-23782117 | MS.gene46392:intron | 30.0% | |
| TTTCTATCTTCAAAGAAACC+GGG | - | chr8.4:23783748-23783767 | None:intergenic | 30.0% | |
| TTTGCAGGAAGAATTTCAAT+TGG | + | chr8.4:23783539-23783558 | MS.gene46392:intron | 30.0% | |
| TTTGTGTAGTTATTGGATTG+TGG | + | chr8.4:23782097-23782116 | MS.gene46392:intron | 30.0% | |
| ! | TAAACCCGTGTATCAAATTT+TGG | + | chr8.4:23783176-23783195 | MS.gene46392:intron | 30.0% |
| ! | TTTTTGTTAGAAGTAGGCAA+AGG | + | chr8.4:23782604-23782623 | MS.gene46392:intron | 30.0% |
| !! | ACTTGTTGGTTCATTTGTTT+CGG | + | chr8.4:23783009-23783028 | MS.gene46392:intron | 30.0% |
| !! | ATCTTGTGATGGATTTGTTA+TGG | + | chr8.4:23783111-23783130 | MS.gene46392:intron | 30.0% |
| !! | ATGAAGCATTGGAGATAAAT+GGG | + | chr8.4:23782536-23782555 | MS.gene46392:intron | 30.0% |
| !! | CAATGTCTATTTTTCCATCT+TGG | - | chr8.4:23784661-23784680 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTTTCCCTTATT+TGG | + | chr8.4:23784340-23784359 | MS.gene46392:intron | 30.0% |
| !!! | AAACGTGTCATTTTCATTGA+GGG | - | chr8.4:23784193-23784212 | None:intergenic | 30.0% |
| !!! | AGTTAGACATTGCTTTTTTC+TGG | + | chr8.4:23784608-23784627 | MS.gene46392:intron | 30.0% |
| !!! | GTTATTTTTGTCATTGATGC+AGG | + | chr8.4:23784832-23784851 | MS.gene46392:intron | 30.0% |
| AACAATATTTCTTCTGCAGG+TGG | - | chr8.4:23784553-23784572 | None:intergenic | 35.0% | |
| AATACCCATGATCACATTAC+AGG | - | chr8.4:23783514-23783533 | None:intergenic | 35.0% | |
| AGCAACAATATTTCTTCTGC+AGG | - | chr8.4:23784556-23784575 | None:intergenic | 35.0% | |
| AGGTAAACAACAATAAGTGG+AGG | - | chr8.4:23784032-23784051 | None:intergenic | 35.0% | |
| CAATTGTGATACAGAGGATA+TGG | + | chr8.4:23782351-23782370 | MS.gene46392:intron | 35.0% | |
| CTATTTGATGTCAAGAGGAA+GGG | + | chr8.4:23783913-23783932 | MS.gene46392:CDS | 35.0% | |
| GAGATATATCATATGACAGC+AGG | - | chr8.4:23782660-23782679 | None:intergenic | 35.0% | |
| GCATTTGGAAGAGCTTATTT+CGG | - | chr8.4:23783419-23783438 | None:intergenic | 35.0% | |
| GTGCCCTGATATATTATGTT+TGG | + | chr8.4:23784074-23784093 | MS.gene46392:intron | 35.0% | |
| GTGGTTCAATTGAAATTGCT+GGG | + | chr8.4:23783031-23783050 | MS.gene46392:intron | 35.0% | |
| TCTATTTGATGTCAAGAGGA+AGG | + | chr8.4:23783912-23783931 | MS.gene46392:CDS | 35.0% | |
| TGCAAACTGGCAATAACTTA+CGG | - | chr8.4:23782562-23782581 | None:intergenic | 35.0% | |
| TGTCAGACATCACCAAATAA+GGG | - | chr8.4:23784355-23784374 | None:intergenic | 35.0% | |
| TTAGCCTGTAATGTGATCAT+GGG | + | chr8.4:23783507-23783526 | MS.gene46392:intron | 35.0% | |
| TTTAGCCTGTAATGTGATCA+TGG | + | chr8.4:23783506-23783525 | MS.gene46392:intron | 35.0% | |
| ! | ATTTTCCTGCAGTCTCATTT+AGG | + | chr8.4:23784098-23784117 | MS.gene46392:intron | 35.0% |
| ! | CTAAGTGAACACTTTTGTTC+TGG | + | chr8.4:23784243-23784262 | MS.gene46392:intron | 35.0% |
| ! | CTCTATGATTTGCACAATAC+TGG | + | chr8.4:23784121-23784140 | MS.gene46392:CDS | 35.0% |
| ! | GAAAGAAAGCAACCTTTTCT+GGG | - | chr8.4:23782935-23782954 | None:intergenic | 35.0% |
| ! | GTCATGATTTTGAGCAATGA+AGG | - | chr8.4:23784713-23784732 | None:intergenic | 35.0% |
| ! | TATGTGCTGGACTATTTTCA+TGG | + | chr8.4:23784749-23784768 | MS.gene46392:intron | 35.0% |
| ! | TGAAAGAAAGCAACCTTTTC+TGG | - | chr8.4:23782936-23782955 | None:intergenic | 35.0% |
| ! | TGCTTTTCTTCTACTCATTG+CGG | + | chr8.4:23782748-23782767 | MS.gene46392:intron | 35.0% |
| ! | TTTCGAGTCTGAAATGAAGT+TGG | + | chr8.4:23784402-23784421 | MS.gene46392:CDS | 35.0% |
| !! | CAGAACAAAAGTGTTCACTT+AGG | - | chr8.4:23784245-23784264 | None:intergenic | 35.0% |
| !! | CATGAAGCATTGGAGATAAA+TGG | + | chr8.4:23782535-23782554 | MS.gene46392:intron | 35.0% |
| !! | TATCTGGATTAAGAGGCATT+TGG | - | chr8.4:23783434-23783453 | None:intergenic | 35.0% |
| !!! | CAAACGTGTCATTTTCATTG+AGG | - | chr8.4:23784194-23784213 | None:intergenic | 35.0% |
| !!! | GCTTTATTTTTCTCATCTCC+CGG | + | chr8.4:23783727-23783746 | MS.gene46392:intron | 35.0% |
| AACTGTTAACAAGGAGATGG+AGG | + | chr8.4:23782315-23782334 | MS.gene46392:intron | 40.0% | |
| AAGTGAACTGTCTTGCAAAC+TGG | - | chr8.4:23782575-23782594 | None:intergenic | 40.0% | |
| AATAGTCCAGCACATACCTT+AGG | - | chr8.4:23784745-23784764 | None:intergenic | 40.0% | |
| AGTCTGTGATGCAAGAATCA+CGG | - | chr8.4:23782045-23782064 | None:intergenic | 40.0% | |
| ATATCATATGACAGCAGGTG+AGG | - | chr8.4:23782655-23782674 | None:intergenic | 40.0% | |
| CATGGGTATTCTTTCTTTGC+AGG | + | chr8.4:23783524-23783543 | MS.gene46392:intron | 40.0% | |
| CTGTCAGACATCACCAAATA+AGG | - | chr8.4:23784356-23784375 | None:intergenic | 40.0% | |
| GCAAGACAGTTCACTTTGTT+TGG | + | chr8.4:23782579-23782598 | MS.gene46392:intron | 40.0% | |
| GGTGGTTCAATTGAAATTGC+TGG | + | chr8.4:23783030-23783049 | MS.gene46392:intron | 40.0% | |
| TTGACAAATACTGGAGCCAT+AGG | - | chr8.4:23783686-23783705 | None:intergenic | 40.0% | |
| TTGTTAGAAGTAGGCAAAGG+TGG | + | chr8.4:23782607-23782626 | MS.gene46392:intron | 40.0% | |
| ! | AGCAGTTCTGTTGTTGATGA+TGG | + | chr8.4:23783252-23783271 | MS.gene46392:CDS | 40.0% |
| ! | GAACACTTTTGTTCTGGTCT+TGG | + | chr8.4:23784249-23784268 | MS.gene46392:intron | 40.0% |
| ! | TCTCAACATGGGCTATATGA+AGG | + | chr8.4:23782676-23782695 | MS.gene46392:intron | 40.0% |
| !! | CTTATTTGGTGATGTCTGAC+AGG | + | chr8.4:23784354-23784373 | MS.gene46392:intron | 40.0% |
| !! | GCAGTTCTGTTGTTGATGAT+GGG | + | chr8.4:23783253-23783272 | MS.gene46392:CDS | 40.0% |
| !! | TGATGATGGGCTAATAAGCA+AGG | + | chr8.4:23783266-23783285 | MS.gene46392:CDS | 40.0% |
| !! | TGTTGGTTCATTTGTTTCGG+TGG | + | chr8.4:23783012-23783031 | MS.gene46392:intron | 40.0% |
| !! | TTTTTCTGGCCAGACTTTCT+TGG | + | chr8.4:23784622-23784641 | MS.gene46392:intron | 40.0% |
| AAGACAGTATCCTGGGAAAG+AGG | + | chr8.4:23782016-23782035 | MS.gene46392:CDS | 45.0% | |
| AAGCCAACAAGACAGTATCC+TGG | + | chr8.4:23782008-23782027 | MS.gene46392:CDS | 45.0% | |
| AGAGCTTGTGACAACAGCTT+AGG | - | chr8.4:23783366-23783385 | None:intergenic | 45.0% | |
| AGCAATCATCATCTCACCTC+TGG | - | chr8.4:23784160-23784179 | None:intergenic | 45.0% | |
| AGCCAACAAGACAGTATCCT+GGG | + | chr8.4:23782009-23782028 | MS.gene46392:CDS | 45.0% | |
| AGTCAGCATCCAAGAAAGTC+TGG | - | chr8.4:23784634-23784653 | None:intergenic | 45.0% | |
| GTCTGTGATGCAAGAATCAC+GGG | - | chr8.4:23782044-23782063 | None:intergenic | 45.0% | |
| TAGAGCCTAAATGAGACTGC+AGG | - | chr8.4:23784106-23784125 | None:intergenic | 45.0% | |
| TCATGACACTTCCCTACCTA+AGG | + | chr8.4:23784726-23784745 | MS.gene46392:CDS | 45.0% | |
| TCCAGCACATACCTTAGGTA+GGG | - | chr8.4:23784740-23784759 | None:intergenic | 45.0% | |
| TTCCCAGGATACTGTCTTGT+TGG | - | chr8.4:23782014-23782033 | None:intergenic | 45.0% | |
| ! | CGAGTCTGAAATGAAGTTGG+CGG | + | chr8.4:23784405-23784424 | MS.gene46392:CDS | 45.0% |
| !! | GATGCTGACTTGAACCAAGA+TGG | + | chr8.4:23784644-23784663 | MS.gene46392:CDS | 45.0% |
| AGGGCACACAGATCAAAGTG+AGG | - | chr8.4:23784061-23784080 | None:intergenic | 50.0% | |
| GCAAGCATGTCAACTGCCTA+TGG | + | chr8.4:23783667-23783686 | MS.gene46392:intron | 50.0% | |
| GTCCAGCACATACCTTAGGT+AGG | - | chr8.4:23784741-23784760 | None:intergenic | 50.0% | |
| TCCCTACCTAAGGTATGTGC+TGG | + | chr8.4:23784736-23784755 | MS.gene46392:intron | 50.0% | |
| TGTCTTCTAGCGCTGCGTTT+GGG | - | chr8.4:23783984-23784003 | None:intergenic | 50.0% | |
| TTGTCTTCTAGCGCTGCGTT+TGG | - | chr8.4:23783985-23784004 | None:intergenic | 50.0% | |
| !! | TGGCTTTATAGAGCGTCCAG+AGG | + | chr8.4:23784141-23784160 | MS.gene46392:CDS | 50.0% |
| ATCACGGGATCCTCTTTCCC+AGG | - | chr8.4:23782029-23782048 | None:intergenic | 55.0% | |
| GGATTGTGGGCAGTTGCGAT+TGG | + | chr8.4:23782111-23782130 | MS.gene46392:intron | 55.0% | |
| !! | GCAACCTTTTCTGGGTGTCG+TGG | - | chr8.4:23782927-23782946 | None:intergenic | 55.0% |
| CTTCTAGCGCTGCGTTTGGG+TGG | - | chr8.4:23783981-23784000 | None:intergenic | 60.0% | |
| GGCACCACGACACCCAGAAA+AGG | + | chr8.4:23782920-23782939 | MS.gene46392:intron | 60.0% | |
| !! | TGGGTGTCGTGGTGCCACAA+TGG | - | chr8.4:23782916-23782935 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23781990 | 23784917 | 23781990 | ID=MS.gene46392 |
| chr8.4 | mRNA | 23781990 | 23784917 | 23781990 | ID=MS.gene46392.t1;Parent=MS.gene46392 |
| chr8.4 | exon | 23781990 | 23782068 | 23781990 | ID=MS.gene46392.t1.exon1;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23781990 | 23782068 | 23781990 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23783205 | 23783287 | 23783205 | ID=MS.gene46392.t1.exon2;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23783205 | 23783287 | 23783205 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23783546 | 23783605 | 23783546 | ID=MS.gene46392.t1.exon3;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23783546 | 23783605 | 23783546 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23783904 | 23784012 | 23783904 | ID=MS.gene46392.t1.exon4;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23783904 | 23784012 | 23783904 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23784110 | 23784162 | 23784110 | ID=MS.gene46392.t1.exon5;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23784110 | 23784162 | 23784110 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23784376 | 23784456 | 23784376 | ID=MS.gene46392.t1.exon6;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23784376 | 23784456 | 23784376 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23784635 | 23784747 | 23784635 | ID=MS.gene46392.t1.exon7;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23784635 | 23784747 | 23784635 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| chr8.4 | exon | 23784854 | 23784917 | 23784854 | ID=MS.gene46392.t1.exon8;Parent=MS.gene46392.t1 |
| chr8.4 | CDS | 23784854 | 23784917 | 23784854 | ID=cds.MS.gene46392.t1;Parent=MS.gene46392.t1 |
| Gene Sequence |
| Protein sequence |
