Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013622.t1 | XP_003602205.1 | 99 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 3.90E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013622.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013622.t1 | G7J6S4 | 99.0 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 2.8e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86009 | MS.gene013622 | PPI |
| MS.gene013622 | MS.gene95282 | PPI |
| MS.gene79764 | MS.gene013622 | PPI |
| MS.gene013622 | MS.gene59569 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013622.t1 | MTR_3g090980 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 3.99e-148 | 409 |
| MS.gene013622.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.85e-122 | 344 |
| MS.gene013622.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.80e-103 | 295 |
| MS.gene013622.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 8.20e-59 | 184 |
| MS.gene013622.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.46e-57 | 178 |
| MS.gene013622.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.50e-55 | 174 |
| MS.gene013622.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.71e-53 | 169 |
| MS.gene013622.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.66e-52 | 167 |
| MS.gene013622.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.19e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013622.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.62e-105 | 301 |
| MS.gene013622.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.68e-98 | 283 |
| MS.gene013622.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.75e-92 | 268 |
| MS.gene013622.t1 | AT4G01026 | 67.876 | 193 | 56 | 2 | 1 | 189 | 1 | 191 | 3.54e-90 | 263 |
| MS.gene013622.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.36e-60 | 185 |
| MS.gene013622.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.77e-53 | 169 |
| MS.gene013622.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.78e-53 | 169 |
| MS.gene013622.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.30e-53 | 169 |
| MS.gene013622.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.55e-51 | 163 |
| MS.gene013622.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 3.41e-48 | 156 |
| MS.gene013622.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene013622.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 1.07e-39 | 133 |
| MS.gene013622.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.20e-39 | 135 |
| MS.gene013622.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.20e-39 | 135 |
| MS.gene013622.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.23e-38 | 130 |
| MS.gene013622.t1 | AT4G18620 | 45.161 | 155 | 78 | 1 | 31 | 178 | 6 | 160 | 1.73e-35 | 122 |
Find 59 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.4:+83298152 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.4:-83300199 | MS.gene013622:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.4:+83298049 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.4:-83300015 | MS.gene013622:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.4:+83298153 | None:intergenic |
| GATTCAATTACCAGGGTTCC+TGG | 0.344614 | 3.4:+83298131 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.4:-83300002 | MS.gene013622:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.4:-83298012 | MS.gene013622:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.4:-83300093 | MS.gene013622:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.4:-83298158 | MS.gene013622:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.4:+83300865 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.4:-83299996 | MS.gene013622:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.4:-83300123 | MS.gene013622:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.4:+83298092 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.4:-83300023 | MS.gene013622:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.4:-83300061 | MS.gene013622:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.4:-83300152 | MS.gene013622:CDS |
| CCACAAAAGATTCAATTACC+AGG | 0.481100 | 3.4:+83298123 | None:intergenic |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.4:+83298159 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.4:-83299995 | MS.gene013622:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.4:+83298160 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.4:+83300066 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.4:-83298030 | MS.gene013622:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.4:-83300191 | MS.gene013622:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.4:-83297989 | MS.gene013622:CDS |
| TAAGGCTTCAACGAAGTAGC+AGG | 0.523056 | 3.4:+83298067 | None:intergenic |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.4:+83300112 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.4:-83300122 | MS.gene013622:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.4:-83300139 | MS.gene013622:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.4:+83300034 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.4:+83300913 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.4:-83300194 | MS.gene013622:intron |
| GAAGTAGCAGGTCTCATCCT+TGG | 0.540678 | 3.4:+83298079 | None:intergenic |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.4:-83300965 | MS.gene013622:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.4:+83300159 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.4:-83298149 | MS.gene013622:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.4:-83300058 | MS.gene013622:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.4:+83297978 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.4:-83300931 | MS.gene013622:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.4:-83300012 | MS.gene013622:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.4:-83298026 | MS.gene013622:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.4:+83300144 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.4:-83300092 | MS.gene013622:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.4:-83297966 | MS.gene013622:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.4:-83300140 | MS.gene013622:CDS |
| CACAAAAGATTCAATTACCA+GGG | 0.601688 | 3.4:+83298124 | None:intergenic |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.4:-83298025 | MS.gene013622:CDS |
| TGATGGAAGACCAGGAACCC+TGG | 0.609392 | 3.4:-83298141 | MS.gene013622:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.4:-83298107 | MS.gene013622:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.4:+83298156 | None:intergenic |
| TCGGCGATGGAGAAAATGAA+CGG | 0.670990 | 3.4:-83301003 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.4:-83300145 | MS.gene013622:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.4:-83300971 | MS.gene013622:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.4:+83297988 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.4:-83300138 | MS.gene013622:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.4:-83300988 | MS.gene013622:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.4:-83298096 | MS.gene013622:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.4:+83300954 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.4:-83298106 | MS.gene013622:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.4:83298169-83298188 | MS.gene013622:CDS | 10.0% |
| !! | AAAAAAAAAAAACAGAATCT+AGG | + | chr3.4:83298158-83298177 | None:intergenic | 15.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.4:83300593-83300612 | MS.gene013622:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.4:83298415-83298434 | None:intergenic | 15.0% |
| !!! | GTTATATGCTTTTTTTTTAA+TGG | - | chr3.4:83299890-83299909 | MS.gene013622:intron | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | - | chr3.4:83298523-83298542 | MS.gene013622:intron | 15.0% |
| !! | AAAAATATCTGTTAAAGTGT+CGG | - | chr3.4:83300024-83300043 | MS.gene013622:CDS | 20.0% |
| !! | ACACGTAATTTAGTATATTT+GGG | - | chr3.4:83299428-83299447 | MS.gene013622:intron | 20.0% |
| !! | ACTATGTTAATTGAATTGAA+TGG | - | chr3.4:83298682-83298701 | MS.gene013622:intron | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.4:83300389-83300408 | None:intergenic | 20.0% |
| !! | TACACGTAATTTAGTATATT+TGG | - | chr3.4:83299427-83299446 | MS.gene013622:intron | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.4:83299171-83299190 | MS.gene013622:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.4:83299278-83299297 | MS.gene013622:intron | 20.0% |
| !! | TTTATATACATGGTCAAAAT+AGG | - | chr3.4:83299688-83299707 | MS.gene013622:intron | 20.0% |
| !!! | AAAAAAAAGCATATAACTAG+AGG | + | chr3.4:83299887-83299906 | None:intergenic | 20.0% |
| !!! | AAAAAAAGCATATAACTAGA+GGG | + | chr3.4:83299886-83299905 | None:intergenic | 20.0% |
| !!! | CTGATATTAGTTTATATACA+TGG | - | chr3.4:83299678-83299697 | MS.gene013622:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.4:83299544-83299563 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.4:83300742-83300761 | None:intergenic | 20.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.4:83299201-83299220 | MS.gene013622:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.4:83299202-83299221 | MS.gene013622:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.4:83300217-83300236 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.4:83300598-83300617 | MS.gene013622:intron | 25.0% |
| ! | AGAATCTAGGAAATCAAAAA+CGG | + | chr3.4:83298145-83298164 | None:intergenic | 25.0% |
| ! | AGAGTAATGAAGGTAAATTA+CGG | + | chr3.4:83299006-83299025 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.4:83298103-83298122 | None:intergenic | 25.0% |
| ! | CACGTAATTTAGTATATTTG+GGG | - | chr3.4:83299429-83299448 | MS.gene013622:intron | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.4:83299957-83299976 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.4:83300583-83300602 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.4:83300597-83300616 | MS.gene013622:intron | 25.0% |
| ! | TACGTGTATAATAATACAAC+TGG | + | chr3.4:83299415-83299434 | None:intergenic | 25.0% |
| ! | TCTTCCCAAAATATTAAATG+CGG | + | chr3.4:83300469-83300488 | None:intergenic | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.4:83300191-83300210 | MS.gene013622:CDS | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.4:83299016-83299035 | None:intergenic | 25.0% |
| ! | TTTGTATTAAACCATTCTTG+TGG | + | chr3.4:83300315-83300334 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.4:83300138-83300157 | MS.gene013622:CDS | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.4:83300261-83300280 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.4:83300913-83300932 | None:intergenic | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3.4:83299806-83299825 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.4:83300137-83300156 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3.4:83298748-83298767 | MS.gene013622:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.4:83300183-83300202 | None:intergenic | 30.0% | |
| AAGGTAAATTACGGTAATGA+AGG | + | chr3.4:83298997-83299016 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.4:83298944-83298963 | MS.gene013622:intron | 30.0% | |
| CACAAAAGATTCAATTACCA+GGG | + | chr3.4:83300838-83300857 | None:intergenic | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.4:83299955-83299974 | MS.gene013622:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.4:83299958-83299977 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.4:83299058-83299077 | None:intergenic | 30.0% | |
| GATTCTTCTATGTTTCTCAA+TGG | - | chr3.4:83298708-83298727 | MS.gene013622:intron | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3.4:83300442-83300461 | MS.gene013622:intron | 30.0% | |
| GTAATTTAGTATATTTGGGG+TGG | - | chr3.4:83299432-83299451 | MS.gene013622:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.4:83300809-83300828 | None:intergenic | 30.0% | |
| TATACATGGTCAAAATAGGA+AGG | - | chr3.4:83299692-83299711 | MS.gene013622:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.4:83300356-83300375 | MS.gene013622:intron | 30.0% | |
| TGATATTACGATGTAGAGTT+TGG | - | chr3.4:83298629-83298648 | MS.gene013622:intron | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.4:83300427-83300446 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.4:83300580-83300599 | None:intergenic | 30.0% | |
| TTCAACAAATTGTCAAACCA+AGG | - | chr3.4:83300163-83300182 | MS.gene013622:CDS | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.4:83298803-83298822 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.4:83299814-83299833 | None:intergenic | 30.0% |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3.4:83299813-83299832 | None:intergenic | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.4:83298898-83298917 | MS.gene013622:intron | 30.0% |
| ! | TGGTCCGCATTTAATATTTT+GGG | - | chr3.4:83300462-83300481 | MS.gene013622:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.4:83299467-83299486 | MS.gene013622:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.4:83300739-83300758 | None:intergenic | 30.0% |
| ! | TTTAAGATACACATTTGCAC+CGG | - | chr3.4:83299137-83299156 | MS.gene013622:intron | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.4:83299159-83299178 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.4:83298753-83298772 | MS.gene013622:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.4:83299511-83299530 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.4:83298807-83298826 | MS.gene013622:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.4:83299052-83299071 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.4:83298097-83298116 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.4:83298371-83298390 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.4:83300570-83300589 | MS.gene013622:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.4:83299918-83299937 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.4:83297971-83297990 | MS.gene013622:CDS | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.4:83298936-83298955 | MS.gene013622:intron | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.4:83300202-83300221 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.4:83300929-83300948 | MS.gene013622:CDS | 35.0% | |
| CCACAAAAGATTCAATTACC+AGG | + | chr3.4:83300839-83300858 | None:intergenic | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.4:83300810-83300829 | MS.gene013622:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.4:83298928-83298947 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.4:83300647-83300666 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.4:83300810-83300829 | None:intergenic | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.4:83300659-83300678 | MS.gene013622:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.4:83300501-83300520 | MS.gene013622:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.4:83300547-83300566 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.4:83299917-83299936 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.4:83299246-83299265 | MS.gene013622:intron | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.4:83300736-83300755 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.4:83298901-83298920 | MS.gene013622:intron | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.4:83299944-83299963 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.4:83300802-83300821 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.4:83300993-83301012 | MS.gene013622:CDS | 35.0% |
| ! | CCTGGTAATTGAATCTTTTG+TGG | - | chr3.4:83300836-83300855 | MS.gene013622:intron | 35.0% |
| ! | CTGGTCCGCATTTAATATTT+TGG | - | chr3.4:83300461-83300480 | MS.gene013622:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.4:83300643-83300662 | MS.gene013622:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.4:83300001-83300020 | MS.gene013622:CDS | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.4:83300631-83300650 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.4:83300806-83300825 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.4:83299436-83299455 | MS.gene013622:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.4:83300351-83300370 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.4:83298866-83298885 | MS.gene013622:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.4:83298867-83298886 | MS.gene013622:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.4:83300343-83300362 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.4:83299829-83299848 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.4:83299840-83299859 | None:intergenic | 35.0% |
| AAGTGCTTAAGCCACAAGAA+TGG | - | chr3.4:83300301-83300320 | MS.gene013622:intron | 40.0% | |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.4:83300098-83300117 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.4:83299606-83299625 | None:intergenic | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.4:83298490-83298509 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.4:83298762-83298781 | None:intergenic | 40.0% | |
| CAGTATCAACATCCCAGATA+TGG | + | chr3.4:83299217-83299236 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.4:83299913-83299932 | MS.gene013622:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.4:83299916-83299935 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.4:83298947-83298966 | MS.gene013622:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.4:83300801-83300820 | MS.gene013622:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.4:83298850-83298869 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.4:83299474-83299493 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.4:83298896-83298915 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.4:83298760-83298779 | MS.gene013622:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.4:83298361-83298380 | MS.gene013622:intron | 40.0% | |
| GGATGTTGATACTGTTAGGA+AGG | - | chr3.4:83299223-83299242 | MS.gene013622:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.4:83299245-83299264 | MS.gene013622:intron | 40.0% | |
| GTGAGATTGCATGCAATATG+TGG | + | chr3.4:83299080-83299099 | None:intergenic | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.4:83299907-83299926 | MS.gene013622:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.4:83300085-83300104 | MS.gene013622:CDS | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.4:83300733-83300752 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.4:83300301-83300320 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.4:83300852-83300871 | MS.gene013622:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.4:83298438-83298457 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.4:83300803-83300822 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.4:83300373-83300392 | MS.gene013622:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.4:83300293-83300312 | None:intergenic | 40.0% |
| ! | TCTGGGATGTTGATACTGTT+AGG | - | chr3.4:83299219-83299238 | MS.gene013622:intron | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.4:83300851-83300870 | MS.gene013622:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.4:83298220-83298239 | MS.gene013622:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.4:83298957-83298976 | MS.gene013622:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.4:83298220-83298239 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.4:83300094-83300113 | MS.gene013622:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.4:83298216-83298235 | MS.gene013622:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.4:83300421-83300440 | MS.gene013622:intron | 40.0% |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.4:83300984-83301003 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.4:83300970-83300989 | MS.gene013622:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.4:83298028-83298047 | MS.gene013622:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.4:83297994-83298013 | MS.gene013622:CDS | 45.0% | |
| ATGAAGCACGACACATACAC+TGG | + | chr3.4:83298569-83298588 | None:intergenic | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.4:83299497-83299516 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.4:83300934-83300953 | MS.gene013622:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.4:83298441-83298460 | MS.gene013622:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.4:83299566-83299585 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.4:83299659-83299678 | None:intergenic | 45.0% | |
| GATTCAATTACCAGGGTTCC+TGG | + | chr3.4:83300831-83300850 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.4:83299497-83299516 | MS.gene013622:intron | 45.0% | |
| TAAGGCTTCAACGAAGTAGC+AGG | + | chr3.4:83300895-83300914 | None:intergenic | 45.0% | |
| TACGATGTAGAGTTTGGCTG+TGG | - | chr3.4:83298635-83298654 | MS.gene013622:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.4:83300933-83300952 | MS.gene013622:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.4:83298765-83298784 | MS.gene013622:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.4:83298837-83298856 | MS.gene013622:intron | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.4:83300405-83300424 | MS.gene013622:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.4:83300853-83300872 | MS.gene013622:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.4:83297988-83298007 | MS.gene013622:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.4:83300294-83300313 | None:intergenic | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.4:83298964-83298983 | MS.gene013622:intron | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.4:83298049-83298068 | None:intergenic | 45.0% |
| !! | TAAAGTGTCGGTTCTTCTGC+TGG | - | chr3.4:83300036-83300055 | MS.gene013622:CDS | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.4:83298963-83298982 | MS.gene013622:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.4:83300414-83300433 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.4:83299854-83299873 | MS.gene013622:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.4:83299858-83299877 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.4:83298768-83298787 | MS.gene013622:intron | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.4:83300730-83300749 | None:intergenic | 50.0% | |
| GAAGTAGCAGGTCTCATCCT+TGG | + | chr3.4:83300883-83300902 | None:intergenic | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.4:83298836-83298855 | MS.gene013622:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.4:83300406-83300425 | MS.gene013622:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.4:83300870-83300889 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.4:83300974-83300993 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.4:83298008-83298027 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | + | chr3.4:83298470-83298489 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.4:83300863-83300882 | MS.gene013622:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.4:83299476-83299495 | MS.gene013622:intron | 50.0% | |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.4:83298818-83298837 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.4:83298814-83298833 | MS.gene013622:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.4:83300413-83300432 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | - | chr3.4:83298458-83298477 | MS.gene013622:intron | 55.0% | |
| TGATGGAAGACCAGGAACCC+TGG | - | chr3.4:83300818-83300837 | MS.gene013622:intron | 55.0% | |
| ! | GGAAGGCGTGTCTGATGTGT+CGG | - | chr3.4:83298237-83298256 | MS.gene013622:intron | 55.0% |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.4:83298820-83298839 | MS.gene013622:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.4:83298821-83298840 | MS.gene013622:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.4:83298819-83298838 | MS.gene013622:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.4:83300947-83300966 | MS.gene013622:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83297962 | 83301019 | 83297962 | ID=MS.gene013622 |
| chr3.4 | mRNA | 83297962 | 83301019 | 83297962 | ID=MS.gene013622.t1;Parent=MS.gene013622 |
| chr3.4 | exon | 83300876 | 83301019 | 83300876 | ID=MS.gene013622.t1.exon1;Parent=MS.gene013622.t1 |
| chr3.4 | CDS | 83300876 | 83301019 | 83300876 | ID=cds.MS.gene013622.t1;Parent=MS.gene013622.t1 |
| chr3.4 | exon | 83299996 | 83300211 | 83299996 | ID=MS.gene013622.t1.exon2;Parent=MS.gene013622.t1 |
| chr3.4 | CDS | 83299996 | 83300211 | 83299996 | ID=cds.MS.gene013622.t1;Parent=MS.gene013622.t1 |
| chr3.4 | exon | 83297962 | 83298201 | 83297962 | ID=MS.gene013622.t1.exon3;Parent=MS.gene013622.t1 |
| chr3.4 | CDS | 83297962 | 83298201 | 83297962 | ID=cds.MS.gene013622.t1;Parent=MS.gene013622.t1 |
| Gene Sequence |
| Protein sequence |
