Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59569.t1 | XP_013444655.1 | 100 | 190 | 0 | 0 | 1 | 190 | 1 | 190 | 3.20E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59569.t1 | Q84MC7 | 81.1 | 175 | 32 | 1 | 10 | 183 | 12 | 186 | 1.2e-79 | 297.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59569.t1 | G8A086 | 100.0 | 190 | 0 | 0 | 1 | 190 | 1 | 190 | 2.3e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057109 | MS.gene59569 | PPI |
| MS.gene057108 | MS.gene59569 | PPI |
| MS.gene32355 | MS.gene59569 | PPI |
| MS.gene59569 | MS.gene06744 | PPI |
| MS.gene59569 | MS.gene31808 | PPI |
| MS.gene59569 | MS.gene046813 | PPI |
| MS.gene59569 | MS.gene057110 | PPI |
| MS.gene59569 | MS.gene06745 | PPI |
| MS.gene84133 | MS.gene59569 | PPI |
| MS.gene013622 | MS.gene59569 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59569.t1 | MTR_8g027805 | 100.000 | 190 | 0 | 0 | 1 | 190 | 1 | 190 | 1.04e-142 | 395 |
| MS.gene59569.t1 | MTR_3g090980 | 75.269 | 186 | 45 | 1 | 3 | 187 | 5 | 190 | 3.08e-103 | 295 |
| MS.gene59569.t1 | MTR_1g028380 | 71.739 | 184 | 52 | 0 | 4 | 187 | 5 | 188 | 1.22e-100 | 288 |
| MS.gene59569.t1 | MTR_3g071740 | 54.777 | 157 | 66 | 3 | 21 | 175 | 69 | 222 | 2.28e-58 | 183 |
| MS.gene59569.t1 | MTR_7g070050 | 55.689 | 167 | 68 | 3 | 18 | 178 | 13 | 179 | 7.85e-57 | 177 |
| MS.gene59569.t1 | MTR_5g083270 | 52.500 | 160 | 70 | 3 | 21 | 177 | 49 | 205 | 9.06e-57 | 178 |
| MS.gene59569.t1 | MTR_4g014460 | 48.447 | 161 | 82 | 1 | 18 | 177 | 49 | 209 | 1.69e-53 | 170 |
| MS.gene59569.t1 | MTR_1g016480 | 46.512 | 172 | 90 | 2 | 4 | 174 | 26 | 196 | 9.98e-53 | 167 |
| MS.gene59569.t1 | MTR_5g030500 | 45.856 | 181 | 90 | 4 | 1 | 175 | 28 | 206 | 1.16e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59569.t1 | AT1G01360 | 78.689 | 183 | 36 | 2 | 1 | 180 | 1 | 183 | 4.50e-105 | 300 |
| MS.gene59569.t1 | AT5G53160 | 76.923 | 182 | 42 | 0 | 3 | 184 | 4 | 185 | 1.57e-104 | 298 |
| MS.gene59569.t1 | AT4G01026 | 75.568 | 176 | 43 | 0 | 11 | 186 | 16 | 191 | 6.78e-99 | 285 |
| MS.gene59569.t1 | AT4G27920 | 69.189 | 185 | 53 | 2 | 3 | 186 | 2 | 183 | 9.33e-96 | 276 |
| MS.gene59569.t1 | AT5G53160 | 74.783 | 115 | 29 | 0 | 3 | 117 | 4 | 118 | 3.06e-60 | 185 |
| MS.gene59569.t1 | AT5G05440 | 52.761 | 163 | 72 | 3 | 16 | 176 | 43 | 202 | 3.01e-55 | 174 |
| MS.gene59569.t1 | AT2G38310 | 53.939 | 165 | 71 | 3 | 20 | 182 | 41 | 202 | 3.57e-54 | 171 |
| MS.gene59569.t1 | AT2G40330 | 50.000 | 164 | 78 | 3 | 16 | 175 | 46 | 209 | 1.39e-52 | 167 |
| MS.gene59569.t1 | AT4G17870 | 49.080 | 163 | 81 | 1 | 18 | 178 | 17 | 179 | 9.23e-50 | 159 |
| MS.gene59569.t1 | AT2G26040 | 46.835 | 158 | 79 | 3 | 18 | 171 | 22 | 178 | 3.41e-49 | 158 |
| MS.gene59569.t1 | AT1G73000 | 39.560 | 182 | 98 | 3 | 4 | 174 | 24 | 204 | 1.20e-44 | 147 |
| MS.gene59569.t1 | AT5G46790 | 49.405 | 168 | 80 | 2 | 15 | 177 | 41 | 208 | 4.33e-44 | 146 |
| MS.gene59569.t1 | AT5G46790 | 49.405 | 168 | 80 | 2 | 15 | 177 | 41 | 208 | 4.33e-44 | 146 |
| MS.gene59569.t1 | AT5G45860 | 54.362 | 149 | 66 | 2 | 31 | 178 | 10 | 157 | 5.73e-43 | 141 |
| MS.gene59569.t1 | AT5G45870 | 53.378 | 148 | 66 | 2 | 31 | 177 | 10 | 155 | 3.28e-42 | 139 |
| MS.gene59569.t1 | AT4G18620 | 45.570 | 158 | 79 | 1 | 27 | 177 | 5 | 162 | 2.09e-38 | 130 |
Find 47 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCACAAACATGATTTA+AGG | 0.199874 | 8.3:-66060852 | MS.gene59569:CDS |
| ATAATACACCTGCTAATAAA+TGG | 0.258954 | 8.3:+66060118 | None:intergenic |
| CTCCGGATGGACTGTGATTA+TGG | 0.268603 | 8.3:+66059443 | None:intergenic |
| GATGATGAGGAACATATTCT+TGG | 0.320325 | 8.3:-66060004 | MS.gene59569:CDS |
| TATTATGGGTTGATATTGAT+AGG | 0.326932 | 8.3:+66059252 | None:intergenic |
| TCGTCCTTCGTGTTCCCTTC+AGG | 0.331294 | 8.3:+66059366 | None:intergenic |
| AGGAACATATTCTTGGTATC+AGG | 0.338682 | 8.3:-66059997 | MS.gene59569:CDS |
| CTCGGAGAGGATGGCCGTGC+AGG | 0.374882 | 8.3:-66059286 | MS.gene59569:CDS |
| AATATAAACCATTTATTAGC+AGG | 0.415514 | 8.3:-66060126 | MS.gene59569:CDS |
| ATTCTTGGTATCAGGATTGT+TGG | 0.418206 | 8.3:-66059989 | MS.gene59569:CDS |
| GGACGAAACTTGTTACTTTG+TGG | 0.425400 | 8.3:-66059349 | MS.gene59569:CDS |
| CTCTTACACTTCCAATACTA+AGG | 0.431766 | 8.3:+66060086 | None:intergenic |
| AGAGAAGTGAATGTTAAATC+TGG | 0.439454 | 8.3:-66060067 | MS.gene59569:CDS |
| ACATCACAAACATGATTTAA+GGG | 0.442195 | 8.3:-66060851 | MS.gene59569:CDS |
| GTCCATCCGGAGGTTATTGA+TGG | 0.445208 | 8.3:-66059432 | MS.gene59569:CDS |
| AAAGTACTAACAAGATGAAC+TGG | 0.454898 | 8.3:+66060787 | None:intergenic |
| CTCTCAGTACTTGTTGTAGC+TGG | 0.467121 | 8.3:+66060040 | None:intergenic |
| ACTTTGTGGAGGCGTTGATT+AGG | 0.470355 | 8.3:-66059335 | MS.gene59569:CDS |
| TTCCATAATCACAGTCCATC+CGG | 0.473119 | 8.3:-66059445 | MS.gene59569:CDS |
| ATGCAAGGTGACCTTAGTAT+TGG | 0.474026 | 8.3:-66060097 | MS.gene59569:CDS |
| CTTGGTATCAGGATTGTTGG+TGG | 0.526123 | 8.3:-66059986 | MS.gene59569:CDS |
| AGCTGATGTCTCGGAGAGGA+TGG | 0.526503 | 8.3:-66059295 | MS.gene59569:CDS |
| ATAAATGGTTTATATTTCTG+TGG | 0.528070 | 8.3:+66060133 | None:intergenic |
| TACAACAAGTACTGAGAGGT+TGG | 0.543951 | 8.3:-66060035 | MS.gene59569:CDS |
| TCGGAGAGGATGGCCGTGCA+GGG | 0.544070 | 8.3:-66059285 | MS.gene59569:CDS |
| TGGGTTGATATTGATAGGAT+CGG | 0.544822 | 8.3:+66059257 | None:intergenic |
| AGACATCAGCTAAAGAACTT+AGG | 0.546542 | 8.3:+66059307 | None:intergenic |
| GATTCAATCACCATTGTACC+TGG | 0.555628 | 8.3:+66059405 | None:intergenic |
| TTCGTCGTGGACGTACCTGA+AGG | 0.560275 | 8.3:-66059381 | MS.gene59569:CDS |
| ATTAGCAGGTGTATTATGCA+AGG | 0.563774 | 8.3:-66060112 | MS.gene59569:CDS |
| GGTCTTCCATCAATAACCTC+CGG | 0.580094 | 8.3:+66059426 | None:intergenic |
| AAGTTCTTTAGCTGATGTCT+CGG | 0.584502 | 8.3:-66059304 | MS.gene59569:CDS |
| GAGGTTATTGATGGAAGACC+AGG | 0.585597 | 8.3:-66059423 | MS.gene59569:CDS |
| TTCCATCAATAACCTCCGGA+TGG | 0.586882 | 8.3:+66059430 | None:intergenic |
| CGAAACTTGTTACTTTGTGG+AGG | 0.590781 | 8.3:-66059346 | MS.gene59569:CDS |
| GATGTGTTTAACAAGAGCAG+AGG | 0.600623 | 8.3:+66060816 | None:intergenic |
| TCGTCGTGGACGTACCTGAA+GGG | 0.600827 | 8.3:-66059380 | MS.gene59569:CDS |
| GTTGGAACAACTTGATGATG+AGG | 0.610978 | 8.3:-66060017 | MS.gene59569:CDS |
| TGATGGAAGACCAGGTACAA+TGG | 0.630980 | 8.3:-66059415 | MS.gene59569:CDS |
| AGGATCGGTTCGACCCTGCA+CGG | 0.651985 | 8.3:+66059272 | None:intergenic |
| GGTGATTGAATCATTCGTCG+TGG | 0.681706 | 8.3:-66059394 | MS.gene59569:CDS |
| CAGCTACAACAAGTACTGAG+AGG | 0.700141 | 8.3:-66060039 | MS.gene59569:CDS |
| CATAATCACAGTCCATCCGG+AGG | 0.702023 | 8.3:-66059442 | MS.gene59569:CDS |
| CTTTAGCTGATGTCTCGGAG+AGG | 0.710726 | 8.3:-66059299 | MS.gene59569:CDS |
| TGGTGGTGATCATAGACTGA+GGG | 0.717983 | 8.3:-66059969 | MS.gene59569:intron |
| TTGGTGGTGATCATAGACTG+AGG | 0.778919 | 8.3:-66059970 | MS.gene59569:CDS |
| CGTACCTGAAGGGAACACGA+AGG | 0.780385 | 8.3:-66059370 | MS.gene59569:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAAAAATAATTTGAATT+TGG | + | chr8.3:66060248-66060267 | None:intergenic | 10.0% |
| !!! | TTTTTACTTATTAATAGAAA+TGG | - | chr8.3:66060549-66060568 | MS.gene59569:intron | 10.0% |
| !! | AATGAAGAAATTGTATAATA+TGG | - | chr8.3:66060305-66060324 | MS.gene59569:intron | 15.0% |
| !! | ACAAAAAAAATAAACTAATC+AGG | + | chr8.3:66059972-66059991 | None:intergenic | 15.0% |
| !! | TTTCCAAAAAAATAAATCAA+TGG | - | chr8.3:66060443-66060462 | MS.gene59569:intron | 15.0% |
| !! | AAAATACCAAACTTGAAATT+TGG | + | chr8.3:66060419-66060438 | None:intergenic | 20.0% |
| !! | AATATAAACCATTTATTAGC+AGG | - | chr8.3:66060038-66060057 | MS.gene59569:CDS | 20.0% |
| !! | ATTTGAATTTGGAAAAACAA+AGG | + | chr8.3:66060237-66060256 | None:intergenic | 20.0% |
| !!! | AAATTTCAAGTTTGGTATTT+TGG | - | chr8.3:66060418-66060437 | MS.gene59569:intron | 20.0% |
| !!! | AATTTTTTTAAGGTTGGATT+AGG | - | chr8.3:66059784-66059803 | MS.gene59569:intron | 20.0% |
| !!! | ATAAATGGTTTATATTTCTG+TGG | + | chr8.3:66060034-66060053 | None:intergenic | 20.0% |
| !!! | CATAGTCAGAAATTTTTTTA+AGG | - | chr8.3:66059774-66059793 | MS.gene59569:intron | 20.0% |
| !!! | CTTCTTTTAATTTTCTCTTT+TGG | + | chr8.3:66059941-66059960 | None:intergenic | 20.0% |
| !!! | GAAAATTAAAAGAAGTTGAT+TGG | - | chr8.3:66059946-66059965 | MS.gene59569:intron | 20.0% |
| !!! | GAAATCATTTTTTTGGAAAA+GGG | - | chr8.3:66059681-66059700 | MS.gene59569:intron | 20.0% |
| !!! | TGAAATCATTTTTTTGGAAA+AGG | - | chr8.3:66059680-66059699 | MS.gene59569:intron | 20.0% |
| !!! | TGACCATTGATTTATTTTTT+TGG | + | chr8.3:66060449-66060468 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTGTCTCTTTC+AGG | - | chr8.3:66059979-66059998 | MS.gene59569:CDS | 20.0% |
| ! | AACTATACATCTCAAAGAAA+TGG | + | chr8.3:66059576-66059595 | None:intergenic | 25.0% |
| ! | ACATCACAAACATGATTTAA+GGG | - | chr8.3:66059313-66059332 | MS.gene59569:CDS | 25.0% |
| ! | ATAATACACCTGCTAATAAA+TGG | + | chr8.3:66060049-66060068 | None:intergenic | 25.0% |
| ! | GAGAGATTATCTTATAATCT+TGG | - | chr8.3:66060492-66060511 | MS.gene59569:intron | 25.0% |
| ! | TCTTATGTTTATGTCTTCAT+GGG | - | chr8.3:66060624-66060643 | MS.gene59569:intron | 25.0% |
| ! | TGAGACATTTAATTGATGTT+TGG | - | chr8.3:66059851-66059870 | MS.gene59569:intron | 25.0% |
| ! | TGTCTCACAAACAATAAAAT+TGG | + | chr8.3:66059838-66059857 | None:intergenic | 25.0% |
| ! | TTCTTATGTTTATGTCTTCA+TGG | - | chr8.3:66060623-66060642 | MS.gene59569:intron | 25.0% |
| !! | TCTAGATTTGTGTTTTATGA+GGG | - | chr8.3:66059598-66059617 | MS.gene59569:intron | 25.0% |
| !! | TTCTAGATTTGTGTTTTATG+AGG | - | chr8.3:66059597-66059616 | MS.gene59569:intron | 25.0% |
| !!! | GTCAGAAATTTTTTTAAGGT+TGG | - | chr8.3:66059778-66059797 | MS.gene59569:intron | 25.0% |
| !!! | TGGTTGTGAAATCATTTTTT+TGG | - | chr8.3:66059674-66059693 | MS.gene59569:intron | 25.0% |
| !!! | TTTTTTGTGTCTGAATTACA+TGG | - | chr8.3:66059488-66059507 | MS.gene59569:intron | 25.0% |
| AATAAATCAATGGTCACCAA+TGG | - | chr8.3:66060453-66060472 | MS.gene59569:intron | 30.0% | |
| ACTATGATTAGAAATTCACG+CGG | - | chr8.3:66060355-66060374 | MS.gene59569:intron | 30.0% | |
| AGAGAAGTGAATGTTAAATC+TGG | - | chr8.3:66060097-66060116 | MS.gene59569:CDS | 30.0% | |
| GACATCACAAACATGATTTA+AGG | - | chr8.3:66059312-66059331 | MS.gene59569:CDS | 30.0% | |
| TTTCAAGATCTTGATTGTCT+TGG | - | chr8.3:66059549-66059568 | MS.gene59569:intron | 30.0% | |
| ! | AAAGTACTAACAAGATGAAC+TGG | + | chr8.3:66059380-66059399 | None:intergenic | 30.0% |
| ! | ATTTGTGTTTTATGAGGGTA+TGG | - | chr8.3:66059603-66059622 | MS.gene59569:intron | 30.0% |
| !!! | CATAAGATGCTAGTTTTGAT+TGG | - | chr8.3:66059647-66059666 | MS.gene59569:intron | 30.0% |
| !!! | TGCTAGTTTTGATTGGTTTA+TGG | - | chr8.3:66059654-66059673 | MS.gene59569:intron | 30.0% |
| !!! | TTTTTTGTCTCTTTCAGGTT+TGG | - | chr8.3:66059984-66060003 | MS.gene59569:CDS | 30.0% |
| AAGTTCTTTAGCTGATGTCT+CGG | - | chr8.3:66060860-66060879 | MS.gene59569:CDS | 35.0% | |
| AGACATCAGCTAAAGAACTT+AGG | + | chr8.3:66060860-66060879 | None:intergenic | 35.0% | |
| AGGAACATATTCTTGGTATC+AGG | - | chr8.3:66060167-66060186 | MS.gene59569:intron | 35.0% | |
| ATTAGCAGGTGTATTATGCA+AGG | - | chr8.3:66060052-66060071 | MS.gene59569:CDS | 35.0% | |
| ATTCTTGGTATCAGGATTGT+TGG | - | chr8.3:66060175-66060194 | MS.gene59569:intron | 35.0% | |
| CTCTTACACTTCCAATACTA+AGG | + | chr8.3:66060081-66060100 | None:intergenic | 35.0% | |
| GATGATGAGGAACATATTCT+TGG | - | chr8.3:66060160-66060179 | MS.gene59569:CDS | 35.0% | |
| TTTGTGTCTGAATTACATGG+TGG | - | chr8.3:66059491-66059510 | MS.gene59569:intron | 35.0% | |
| !! | TGGGTTGATATTGATAGGAT+CGG | + | chr8.3:66060910-66060929 | None:intergenic | 35.0% |
| AAATTTGGACCGTCTGATCT+TGG | + | chr8.3:66060404-66060423 | None:intergenic | 40.0% | |
| ACCGTCTGATCTTGGTTTAA+CGG | + | chr8.3:66060396-66060415 | None:intergenic | 40.0% | |
| ACCGTTAAACCAAGATCAGA+CGG | - | chr8.3:66060392-66060411 | MS.gene59569:intron | 40.0% | |
| AGCATCAGTTGTAAGCTGAA+CGG | - | chr8.3:66060657-66060676 | MS.gene59569:intron | 40.0% | |
| ATGCAAGGTGACCTTAGTAT+TGG | - | chr8.3:66060067-66060086 | MS.gene59569:CDS | 40.0% | |
| GATGTGTTTAACAAGAGCAG+AGG | + | chr8.3:66059351-66059370 | None:intergenic | 40.0% | |
| GATTCAATCACCATTGTACC+TGG | + | chr8.3:66060762-66060781 | None:intergenic | 40.0% | |
| TTCCATAATCACAGTCCATC+CGG | - | chr8.3:66060719-66060738 | MS.gene59569:intron | 40.0% | |
| !! | CGAAACTTGTTACTTTGTGG+AGG | - | chr8.3:66060818-66060837 | MS.gene59569:CDS | 40.0% |
| !! | GACGGTCCAAATTTCAAGTT+TGG | - | chr8.3:66060410-66060429 | MS.gene59569:intron | 40.0% |
| !! | GGACGAAACTTGTTACTTTG+TGG | - | chr8.3:66060815-66060834 | MS.gene59569:CDS | 40.0% |
| !! | GTTGGAACAACTTGATGATG+AGG | - | chr8.3:66060147-66060166 | MS.gene59569:CDS | 40.0% |
| !! | TACAACAAGTACTGAGAGGT+TGG | - | chr8.3:66060129-66060148 | MS.gene59569:CDS | 40.0% |
| CATTCGCACATTCAGTCCAT+TGG | + | chr8.3:66060472-66060491 | None:intergenic | 45.0% | |
| CTTGGTATCAGGATTGTTGG+TGG | - | chr8.3:66060178-66060197 | MS.gene59569:intron | 45.0% | |
| GAGGTTATTGATGGAAGACC+AGG | - | chr8.3:66060741-66060760 | MS.gene59569:intron | 45.0% | |
| GGTCTTCCATCAATAACCTC+CGG | + | chr8.3:66060741-66060760 | None:intergenic | 45.0% | |
| GGTGATTGAATCATTCGTCG+TGG | - | chr8.3:66060770-66060789 | MS.gene59569:intron | 45.0% | |
| TGATGGAAGACCAGGTACAA+TGG | - | chr8.3:66060749-66060768 | MS.gene59569:intron | 45.0% | |
| TTCCATCAATAACCTCCGGA+TGG | + | chr8.3:66060737-66060756 | None:intergenic | 45.0% | |
| ! | TGGTGGTGATCATAGACTGA+GGG | - | chr8.3:66060195-66060214 | MS.gene59569:intron | 45.0% |
| !! | ACTTTGTGGAGGCGTTGATT+AGG | - | chr8.3:66060829-66060848 | MS.gene59569:CDS | 45.0% |
| !! | CAATGGACTGAATGTGCGAA+TGG | - | chr8.3:66060470-66060489 | MS.gene59569:intron | 45.0% |
| !! | CAGCTACAACAAGTACTGAG+AGG | - | chr8.3:66060125-66060144 | MS.gene59569:CDS | 45.0% |
| !! | CTCTCAGTACTTGTTGTAGC+TGG | + | chr8.3:66060127-66060146 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGACTG+AGG | - | chr8.3:66060194-66060213 | MS.gene59569:intron | 45.0% |
| !! | TATTAATAAGTAAAAAAATA+TGG | + | chr8.3:66060545-66060564 | None:intergenic | 5.0% |
| AATTCACGCGGTCAGCACAT+TGG | - | chr8.3:66060367-66060386 | MS.gene59569:intron | 50.0% | |
| CATAATCACAGTCCATCCGG+AGG | - | chr8.3:66060722-66060741 | MS.gene59569:intron | 50.0% | |
| CTTTAGCTGATGTCTCGGAG+AGG | - | chr8.3:66060865-66060884 | MS.gene59569:CDS | 50.0% | |
| GTCCATCCGGAGGTTATTGA+TGG | - | chr8.3:66060732-66060751 | MS.gene59569:intron | 50.0% | |
| !! | CTCCGGATGGACTGTGATTA+TGG | + | chr8.3:66060724-66060743 | None:intergenic | 50.0% |
| AGCTGATGTCTCGGAGAGGA+TGG | - | chr8.3:66060869-66060888 | MS.gene59569:CDS | 55.0% | |
| CGTACCTGAAGGGAACACGA+AGG | - | chr8.3:66060794-66060813 | MS.gene59569:intron | 55.0% | |
| TCGTCCTTCGTGTTCCCTTC+AGG | + | chr8.3:66060801-66060820 | None:intergenic | 55.0% | |
| TCGTCGTGGACGTACCTGAA+GGG | - | chr8.3:66060784-66060803 | MS.gene59569:intron | 55.0% | |
| TTCGTCGTGGACGTACCTGA+AGG | - | chr8.3:66060783-66060802 | MS.gene59569:intron | 55.0% | |
| !! | AGGATCGGTTCGACCCTGCA+CGG | + | chr8.3:66060895-66060914 | None:intergenic | 60.0% |
| TCGGAGAGGATGGCCGTGCA+GGG | - | chr8.3:66060879-66060898 | MS.gene59569:CDS | 65.0% | |
| CTCGGAGAGGATGGCCGTGC+AGG | - | chr8.3:66060878-66060897 | MS.gene59569:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66059254 | 66060932 | 66059254 | ID=MS.gene59569 |
| chr8.3 | mRNA | 66059254 | 66060932 | 66059254 | ID=MS.gene59569.t1;Parent=MS.gene59569 |
| chr8.3 | exon | 66060798 | 66060932 | 66060798 | ID=MS.gene59569.t1.exon1;Parent=MS.gene59569.t1 |
| chr8.3 | CDS | 66060798 | 66060932 | 66060798 | ID=cds.MS.gene59569.t1;Parent=MS.gene59569.t1 |
| chr8.3 | exon | 66059970 | 66060185 | 66059970 | ID=MS.gene59569.t1.exon2;Parent=MS.gene59569.t1 |
| chr8.3 | CDS | 66059970 | 66060185 | 66059970 | ID=cds.MS.gene59569.t1;Parent=MS.gene59569.t1 |
| chr8.3 | exon | 66059254 | 66059475 | 66059254 | ID=MS.gene59569.t1.exon3;Parent=MS.gene59569.t1 |
| chr8.3 | CDS | 66059254 | 66059475 | 66059254 | ID=cds.MS.gene59569.t1;Parent=MS.gene59569.t1 |
| Gene Sequence |
| Protein sequence |
