Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05082.t1 | XP_013460525.1 | 97 | 364 | 11 | 0 | 1 | 364 | 62 | 425 | 6.70E-200 | 706.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05082.t1 | Q689D6 | 39.3 | 336 | 194 | 5 | 1 | 330 | 56 | 387 | 2.9e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05082.t1 | A0A072UXM1 | 97.0 | 364 | 11 | 0 | 1 | 364 | 62 | 425 | 4.8e-200 | 706.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05082 | MS.gene41893 | PPI |
| MS.gene068083 | MS.gene05082 | PPI |
| MS.gene05082 | MS.gene013931 | PPI |
| MS.gene05082 | MS.gene055711 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05082.t1 | MTR_3g063230 | 96.978 | 364 | 11 | 0 | 1 | 364 | 62 | 425 | 0.0 | 738 |
| MS.gene05082.t1 | MTR_3g063230 | 90.659 | 364 | 10 | 1 | 1 | 364 | 62 | 401 | 0.0 | 677 |
| MS.gene05082.t1 | MTR_7g088530 | 39.144 | 327 | 187 | 3 | 4 | 330 | 59 | 373 | 6.79e-71 | 227 |
| MS.gene05082.t1 | MTR_6g033595 | 37.018 | 389 | 212 | 9 | 1 | 362 | 58 | 440 | 3.61e-64 | 211 |
| MS.gene05082.t1 | MTR_2g067960 | 36.957 | 322 | 195 | 5 | 13 | 330 | 35 | 352 | 2.83e-53 | 182 |
| MS.gene05082.t1 | MTR_1g032040 | 31.737 | 334 | 213 | 6 | 20 | 349 | 63 | 385 | 5.57e-42 | 151 |
| MS.gene05082.t1 | MTR_1g032380 | 31.737 | 334 | 213 | 6 | 20 | 349 | 63 | 385 | 5.57e-42 | 151 |
| MS.gene05082.t1 | MTR_1g072550 | 30.838 | 334 | 216 | 6 | 20 | 349 | 63 | 385 | 1.62e-39 | 144 |
| MS.gene05082.t1 | MTR_6g043850 | 27.439 | 328 | 188 | 7 | 47 | 360 | 84 | 375 | 4.00e-33 | 130 |
| MS.gene05082.t1 | MTR_7g107280 | 31.419 | 296 | 187 | 7 | 31 | 320 | 71 | 356 | 1.01e-31 | 124 |
| MS.gene05082.t1 | MTR_4g053720 | 29.070 | 344 | 200 | 10 | 3 | 326 | 36 | 355 | 1.04e-31 | 122 |
| MS.gene05082.t1 | MTR_3g105530 | 27.536 | 345 | 215 | 7 | 2 | 330 | 47 | 372 | 5.88e-30 | 119 |
| MS.gene05082.t1 | MTR_7g117270 | 26.849 | 365 | 240 | 9 | 1 | 353 | 96 | 445 | 1.68e-28 | 116 |
| MS.gene05082.t1 | MTR_7g018630 | 26.586 | 331 | 209 | 8 | 6 | 325 | 68 | 375 | 4.66e-26 | 108 |
| MS.gene05082.t1 | MTR_8g089370 | 26.129 | 310 | 212 | 6 | 45 | 350 | 92 | 388 | 5.83e-24 | 102 |
| MS.gene05082.t1 | MTR_1g019170 | 24.036 | 337 | 197 | 7 | 23 | 333 | 56 | 359 | 4.99e-23 | 99.8 |
| MS.gene05082.t1 | MTR_3g029990 | 24.629 | 337 | 195 | 8 | 23 | 333 | 56 | 359 | 8.78e-23 | 100 |
| MS.gene05082.t1 | MTR_3g029990 | 24.629 | 337 | 195 | 8 | 23 | 333 | 56 | 359 | 9.15e-23 | 100 |
| MS.gene05082.t1 | MTR_1g098960 | 24.332 | 337 | 196 | 8 | 23 | 333 | 58 | 361 | 2.69e-22 | 97.8 |
| MS.gene05082.t1 | MTR_3g030020 | 24.516 | 310 | 191 | 7 | 42 | 333 | 32 | 316 | 5.52e-20 | 90.5 |
| MS.gene05082.t1 | MTR_0153s0070 | 23.785 | 391 | 212 | 9 | 2 | 360 | 24 | 360 | 3.03e-19 | 88.6 |
| MS.gene05082.t1 | MTR_3g083350 | 24.242 | 363 | 237 | 11 | 10 | 353 | 75 | 418 | 2.55e-18 | 86.7 |
| MS.gene05082.t1 | MTR_0153s0070 | 24.917 | 301 | 191 | 7 | 2 | 286 | 54 | 335 | 1.38e-17 | 83.2 |
| MS.gene05082.t1 | MTR_3g074730 | 24.451 | 319 | 218 | 10 | 3 | 313 | 68 | 371 | 9.89e-14 | 72.4 |
| MS.gene05082.t1 | MTR_8g102038 | 26.977 | 215 | 121 | 6 | 58 | 255 | 43 | 238 | 1.91e-12 | 66.6 |
| MS.gene05082.t1 | MTR_3g448960 | 21.365 | 337 | 181 | 10 | 23 | 333 | 58 | 336 | 1.03e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05082.t1 | AT1G06440 | 70.659 | 334 | 94 | 3 | 1 | 331 | 44 | 376 | 1.49e-172 | 486 |
| MS.gene05082.t1 | AT4G33495 | 39.583 | 336 | 193 | 5 | 1 | 330 | 56 | 387 | 2.00e-72 | 231 |
| MS.gene05082.t1 | AT5G45790 | 38.941 | 321 | 184 | 3 | 10 | 330 | 87 | 395 | 2.32e-72 | 232 |
| MS.gene05082.t1 | AT5G45790 | 40.199 | 301 | 168 | 3 | 30 | 330 | 22 | 310 | 6.29e-71 | 226 |
| MS.gene05082.t1 | AT4G24320 | 30.120 | 332 | 218 | 8 | 5 | 331 | 39 | 361 | 3.97e-35 | 133 |
| MS.gene05082.t1 | AT3G58520 | 32.440 | 336 | 195 | 8 | 3 | 318 | 37 | 360 | 8.23e-34 | 129 |
| MS.gene05082.t1 | AT2G31290 | 26.558 | 369 | 219 | 9 | 13 | 357 | 50 | 390 | 9.79e-33 | 127 |
| MS.gene05082.t1 | AT2G31290 | 26.558 | 369 | 219 | 9 | 13 | 357 | 50 | 390 | 9.79e-33 | 127 |
| MS.gene05082.t1 | AT3G58520 | 30.149 | 335 | 200 | 7 | 1 | 325 | 45 | 355 | 2.15e-32 | 125 |
| MS.gene05082.t1 | AT3G63090 | 29.968 | 317 | 194 | 6 | 20 | 325 | 66 | 365 | 1.04e-31 | 124 |
| MS.gene05082.t1 | AT5G21970 | 26.810 | 373 | 227 | 10 | 2 | 347 | 66 | 419 | 1.35e-31 | 124 |
| MS.gene05082.t1 | AT5G21970 | 26.810 | 373 | 227 | 10 | 2 | 347 | 66 | 419 | 1.35e-31 | 124 |
| MS.gene05082.t1 | AT1G71850 | 25.479 | 365 | 226 | 8 | 1 | 345 | 41 | 379 | 6.75e-30 | 119 |
| MS.gene05082.t1 | AT5G48040 | 28.487 | 337 | 197 | 9 | 5 | 325 | 53 | 361 | 9.61e-30 | 119 |
| MS.gene05082.t1 | AT2G39120 | 28.750 | 320 | 216 | 4 | 6 | 325 | 48 | 355 | 1.76e-29 | 117 |
| MS.gene05082.t1 | AT4G01037 | 27.557 | 352 | 233 | 10 | 5 | 349 | 92 | 428 | 2.79e-28 | 115 |
| MS.gene05082.t1 | AT1G79120 | 27.891 | 294 | 187 | 5 | 46 | 326 | 115 | 396 | 1.47e-27 | 112 |
| MS.gene05082.t1 | AT1G79120 | 27.891 | 294 | 187 | 5 | 46 | 326 | 115 | 396 | 1.47e-27 | 112 |
| MS.gene05082.t1 | AT5G62990 | 24.742 | 291 | 195 | 5 | 46 | 325 | 115 | 392 | 6.57e-20 | 91.3 |
| MS.gene05082.t1 | AT4G08940 | 24.451 | 319 | 198 | 11 | 10 | 313 | 84 | 374 | 4.56e-11 | 64.3 |
Find 92 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGGTTAAGGTGGAGCTTC+TGG | 0.182286 | 3.4:-65421260 | None:intergenic |
| ATGGCAGAGTTTGCCTTATA+TGG | 0.183804 | 3.4:+65421785 | MS.gene05082:CDS |
| AGATAAGCCAATTTAGAAAA+TGG | 0.242614 | 3.4:+65421937 | MS.gene05082:CDS |
| AACAGAGACTGATCGGTTTC+TGG | 0.272747 | 3.4:-65421217 | None:intergenic |
| ATTTATCGACAAAGGGTAAA+AGG | 0.278186 | 3.4:+65422015 | MS.gene05082:CDS |
| CTTGCATCATAGACAGGATT+TGG | 0.284743 | 3.4:-65422086 | None:intergenic |
| TAATATAAGGGATCTATTCT+TGG | 0.287223 | 3.4:+65421974 | MS.gene05082:CDS |
| ATCTCATACGGCCCCATATA+AGG | 0.303643 | 3.4:-65421798 | None:intergenic |
| CGCTGTTAATTCCAAGTTGC+AGG | 0.304541 | 3.4:+65422154 | MS.gene05082:CDS |
| CATTAATAGCCTCAGCTTCA+AGG | 0.367529 | 3.4:-65421392 | None:intergenic |
| AGGCAGTGGCACCACGGTTA+AGG | 0.390123 | 3.4:-65421272 | None:intergenic |
| GTGGAGCTTCTGGGAGAGAT+TGG | 0.402579 | 3.4:-65421250 | None:intergenic |
| AGCCAATTTAGAAAATGGTT+TGG | 0.404374 | 3.4:+65421942 | MS.gene05082:CDS |
| ACAGAGACTGATCGGTTTCT+GGG | 0.404457 | 3.4:-65421216 | None:intergenic |
| TTCAAGGTTTGGAGGGAGCT+TGG | 0.404473 | 3.4:+65421495 | MS.gene05082:CDS |
| AGCAGCTCTAAAACCACTGC+TGG | 0.410701 | 3.4:-65421628 | None:intergenic |
| TGAGAAGAAGAAGACATCTA+AGG | 0.415354 | 3.4:+65421827 | MS.gene05082:CDS |
| TTCTTGCTCAACCGCATCCC+TGG | 0.418880 | 3.4:-65421741 | None:intergenic |
| TGGCAGAGTTTGCCTTATAT+GGG | 0.419505 | 3.4:+65421786 | MS.gene05082:CDS |
| GTCCATGTCTGCTTCTAAAA+CGG | 0.429134 | 3.4:+65421455 | MS.gene05082:CDS |
| GAGCTGCTGTTGAGGATTGG+AGG | 0.431533 | 3.4:+65421643 | MS.gene05082:CDS |
| TTAGAGCTGCTGTTGAGGAT+TGG | 0.433013 | 3.4:+65421640 | MS.gene05082:CDS |
| ACGGTTAAGGTGGAGCTTCT+GGG | 0.434976 | 3.4:-65421259 | None:intergenic |
| GCTTTAGTCAAAAGATGATA+AGG | 0.445702 | 3.4:-65422231 | None:intergenic |
| CCTGCAAAACGGCTGCAACT+TGG | 0.450688 | 3.4:-65421340 | None:intergenic |
| GAATACACATTTGCTGAAGC+TGG | 0.457928 | 3.4:+65421593 | MS.gene05082:CDS |
| ATCTTCTATTTATCGACAAA+GGG | 0.468078 | 3.4:+65422008 | MS.gene05082:CDS |
| ACCGAGTCCTCAAAATCATC+AGG | 0.470226 | 3.4:-65421522 | None:intergenic |
| CTTCTCCTTGCATCATAGAC+AGG | 0.474197 | 3.4:-65422092 | None:intergenic |
| GACATCTAAGGCTGGAATGA+TGG | 0.476618 | 3.4:+65421839 | MS.gene05082:CDS |
| TTTAAACAACGGTATCCTCC+AGG | 0.478713 | 3.4:+65421723 | MS.gene05082:CDS |
| GGATCTATTCTTGGATCACC+CGG | 0.492833 | 3.4:+65421983 | MS.gene05082:CDS |
| GGTTGTTGAGTGTTGTAAAG+AGG | 0.496698 | 3.4:+65421665 | MS.gene05082:CDS |
| AAGCAGACATGGACAAAATC+CGG | 0.500990 | 3.4:-65421446 | None:intergenic |
| AGCTGCTGTTGAGGATTGGA+GGG | 0.511698 | 3.4:+65421644 | MS.gene05082:CDS |
| ACCTTGAAAACAGCTCTAAG+AGG | 0.512545 | 3.4:-65421480 | None:intergenic |
| TTGTTGTTGAAAGACTTGTC+CGG | 0.521531 | 3.4:+65421427 | MS.gene05082:CDS |
| GTCGATAAATAGAAGATCCC+CGG | 0.526665 | 3.4:-65422002 | None:intergenic |
| GAGTTTAACAGTGGAAAAGA+TGG | 0.535382 | 3.4:+65421902 | MS.gene05082:CDS |
| GTTGGTGATGTTCCCAGCAG+TGG | 0.538004 | 3.4:+65421615 | MS.gene05082:CDS |
| AAGAAGAAGACATCTAAGGC+TGG | 0.541329 | 3.4:+65421831 | MS.gene05082:CDS |
| ATCGGTTTCTGGGGTTAGCA+AGG | 0.543715 | 3.4:-65421206 | None:intergenic |
| GATCTTCTATTTATCGACAA+AGG | 0.545723 | 3.4:+65422007 | MS.gene05082:CDS |
| CTGTCTATGATGCAAGGAGA+AGG | 0.546551 | 3.4:+65422093 | MS.gene05082:CDS |
| AACGGTATCCTCCAGGGATG+CGG | 0.549302 | 3.4:+65421730 | MS.gene05082:CDS |
| TGTTTCTCGCCTTGAAGCTG+AGG | 0.559498 | 3.4:+65421383 | MS.gene05082:CDS |
| TCAGAGCCAATGTGAAGGAA+TGG | 0.559863 | 3.4:+65421766 | MS.gene05082:CDS |
| CAGTGGCACCACGGTTAAGG+TGG | 0.560513 | 3.4:-65421269 | None:intergenic |
| GTGAGGAAACTTGCGGAGGA+AGG | 0.561465 | 3.4:-65421292 | None:intergenic |
| AAACTTGCGGAGGAAGGCAG+TGG | 0.562183 | 3.4:-65421286 | None:intergenic |
| TTCTCACTGACCATCTCATA+CGG | 0.567104 | 3.4:-65421810 | None:intergenic |
| GCATCAGTTAACCTGCAAAA+CGG | 0.571025 | 3.4:-65421351 | None:intergenic |
| GAACAGCAATGACTTTGAGA+AGG | 0.571551 | 3.4:-65421173 | None:intergenic |
| CAAAACGGCTGCAACTTGGA+AGG | 0.574780 | 3.4:-65421336 | None:intergenic |
| GGAAATCAACAGAGACTGAT+CGG | 0.577442 | 3.4:-65421224 | None:intergenic |
| TGTGGCAACGAGGTTGAACA+AGG | 0.581947 | 3.4:+65422185 | MS.gene05082:CDS |
| TGCAACTTGGAATTAACAGC+GGG | 0.584617 | 3.4:-65422152 | None:intergenic |
| TTTAACAGTGGAAAAGATGG+TGG | 0.585164 | 3.4:+65421905 | MS.gene05082:CDS |
| CAAATCCTGTCTATGATGCA+AGG | 0.586740 | 3.4:+65422087 | MS.gene05082:CDS |
| GGAGTGCAGTGTTAATAGCA+TGG | 0.588749 | 3.4:+65421686 | MS.gene05082:CDS |
| TTATATGGGGCCGTATGAGA+TGG | 0.596699 | 3.4:+65421800 | MS.gene05082:CDS |
| AAGTTGCAGGACAAAAGTTG+TGG | 0.601248 | 3.4:+65422167 | MS.gene05082:CDS |
| TAAGGCTGGAATGATGGCGA+TGG | 0.602790 | 3.4:+65421845 | MS.gene05082:CDS |
| TGAGTTCATGAGTTTAACAG+TGG | 0.604590 | 3.4:+65421893 | MS.gene05082:CDS |
| ACAAGTCTTTCAACAACAAG+AGG | 0.608199 | 3.4:-65421423 | None:intergenic |
| ACTCATGAACTCATGAACAA+TGG | 0.611094 | 3.4:-65421883 | None:intergenic |
| TCGATAAATAGAAGATCCCC+GGG | 0.612411 | 3.4:-65422001 | None:intergenic |
| GGCAGAGTTTGCCTTATATG+GGG | 0.613431 | 3.4:+65421787 | MS.gene05082:CDS |
| CAGAGACTGATCGGTTTCTG+GGG | 0.613837 | 3.4:-65421215 | None:intergenic |
| ACTCTGCCATTCCTTCACAT+TGG | 0.624053 | 3.4:-65421772 | None:intergenic |
| ACACATTTGCTGAAGCTGGT+TGG | 0.625595 | 3.4:+65421597 | MS.gene05082:CDS |
| GAACTTCAGAGCCAATGTGA+AGG | 0.627730 | 3.4:+65421761 | MS.gene05082:CDS |
| TTAAACAACGGTATCCTCCA+GGG | 0.630918 | 3.4:+65421724 | MS.gene05082:CDS |
| GATCTATTCTTGGATCACCC+GGG | 0.631074 | 3.4:+65421984 | MS.gene05082:CDS |
| GCAGCTCTAAAACCACTGCT+GGG | 0.636805 | 3.4:-65421627 | None:intergenic |
| CGAAAATGTGAGGAAACTTG+CGG | 0.636892 | 3.4:-65421299 | None:intergenic |
| TGGCAACGAGGTTGAACAAG+GGG | 0.640157 | 3.4:+65422187 | MS.gene05082:CDS |
| ATCTATTCTTGGATCACCCG+GGG | 0.642117 | 3.4:+65421985 | MS.gene05082:CDS |
| TTGAGGGAAGCTTATGAACG+AGG | 0.648422 | 3.4:+65422050 | MS.gene05082:CDS |
| GTGTTAATAGCATGGAAATG+CGG | 0.648757 | 3.4:+65421694 | MS.gene05082:CDS |
| TTGCTCAACCGCATCCCTGG+AGG | 0.654116 | 3.4:-65421738 | None:intergenic |
| CTTGTTGCTTTAGAACGCCG+TGG | 0.656804 | 3.4:+65422125 | MS.gene05082:CDS |
| TAGTAAATATCGAAAATGTG+AGG | 0.673291 | 3.4:-65421309 | None:intergenic |
| GTGGCAACGAGGTTGAACAA+GGG | 0.679249 | 3.4:+65422186 | MS.gene05082:CDS |
| AATTAACAGCGGGTAAACCA+CGG | 0.687907 | 3.4:-65422142 | None:intergenic |
| GCTTCTGGGAGAGATTGGAG+AGG | 0.697645 | 3.4:-65421245 | None:intergenic |
| GGAGGAAGGCAGTGGCACCA+CGG | 0.702432 | 3.4:-65421278 | None:intergenic |
| CTGCAACTTGGAATTAACAG+CGG | 0.704858 | 3.4:-65422153 | None:intergenic |
| GGACAAAAGTTGTGGCAACG+AGG | 0.708800 | 3.4:+65422175 | MS.gene05082:CDS |
| CAGAAGCTCCACCTTAACCG+TGG | 0.710701 | 3.4:+65421261 | MS.gene05082:CDS |
| GATGGCGATGGAGAAGCGAG+CGG | 0.722066 | 3.4:+65421857 | MS.gene05082:CDS |
| AAATGTGAGGAAACTTGCGG+AGG | 0.742899 | 3.4:-65421296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGTATTGATTTTAATATAA+GGG | + | chr3.4:65421962-65421981 | MS.gene05082:CDS | 15.0% |
| !!! | TTGGTATTGATTTTAATATA+AGG | + | chr3.4:65421961-65421980 | MS.gene05082:CDS | 15.0% |
| ! | AGATAAGCCAATTTAGAAAA+TGG | + | chr3.4:65421937-65421956 | MS.gene05082:CDS | 25.0% |
| ! | ATCTTCTATTTATCGACAAA+GGG | + | chr3.4:65422008-65422027 | MS.gene05082:CDS | 25.0% |
| ! | TAATATAAGGGATCTATTCT+TGG | + | chr3.4:65421974-65421993 | MS.gene05082:CDS | 25.0% |
| ! | TAGTAAATATCGAAAATGTG+AGG | - | chr3.4:65421312-65421331 | None:intergenic | 25.0% |
| !! | TACCAAACCATTTTCTAAAT+TGG | - | chr3.4:65421947-65421966 | None:intergenic | 25.0% |
| AGCCAATTTAGAAAATGGTT+TGG | + | chr3.4:65421942-65421961 | MS.gene05082:CDS | 30.0% | |
| ATTTATCGACAAAGGGTAAA+AGG | + | chr3.4:65422015-65422034 | MS.gene05082:CDS | 30.0% | |
| GATCTTCTATTTATCGACAA+AGG | + | chr3.4:65422007-65422026 | MS.gene05082:CDS | 30.0% | |
| !!! | TGCGGTATAGTTTTAAACAA+CGG | + | chr3.4:65421712-65421731 | MS.gene05082:CDS | 30.0% |
| ACAAGTCTTTCAACAACAAG+AGG | - | chr3.4:65421426-65421445 | None:intergenic | 35.0% | |
| ACTCATGAACTCATGAACAA+TGG | - | chr3.4:65421886-65421905 | None:intergenic | 35.0% | |
| GAGTTTAACAGTGGAAAAGA+TGG | + | chr3.4:65421902-65421921 | MS.gene05082:CDS | 35.0% | |
| GTGTTAATAGCATGGAAATG+CGG | + | chr3.4:65421694-65421713 | MS.gene05082:CDS | 35.0% | |
| TGAGAAGAAGAAGACATCTA+AGG | + | chr3.4:65421827-65421846 | MS.gene05082:CDS | 35.0% | |
| TGAGTTCATGAGTTTAACAG+TGG | + | chr3.4:65421893-65421912 | MS.gene05082:CDS | 35.0% | |
| TTTAACAGTGGAAAAGATGG+TGG | + | chr3.4:65421905-65421924 | MS.gene05082:CDS | 35.0% | |
| ! | TTGTTGTTGAAAGACTTGTC+CGG | + | chr3.4:65421427-65421446 | MS.gene05082:CDS | 35.0% |
| !! | TGTTTTTCAGCTTTGTGATG+CGG | + | chr3.4:65421563-65421582 | MS.gene05082:CDS | 35.0% |
| !! | TTAGAGCTGTTTTCAAGGTT+TGG | + | chr3.4:65421484-65421503 | MS.gene05082:CDS | 35.0% |
| AAGCAGACATGGACAAAATC+CGG | - | chr3.4:65421449-65421468 | None:intergenic | 40.0% | |
| AAGTTGCAGGACAAAAGTTG+TGG | + | chr3.4:65422167-65422186 | MS.gene05082:CDS | 40.0% | |
| AATTAACAGCGGGTAAACCA+CGG | - | chr3.4:65422145-65422164 | None:intergenic | 40.0% | |
| ATGGCAGAGTTTGCCTTATA+TGG | + | chr3.4:65421785-65421804 | MS.gene05082:CDS | 40.0% | |
| CAAATCCTGTCTATGATGCA+AGG | + | chr3.4:65422087-65422106 | MS.gene05082:CDS | 40.0% | |
| CATTAATAGCCTCAGCTTCA+AGG | - | chr3.4:65421395-65421414 | None:intergenic | 40.0% | |
| CGAAAATGTGAGGAAACTTG+CGG | - | chr3.4:65421302-65421321 | None:intergenic | 40.0% | |
| CTGCAACTTGGAATTAACAG+CGG | - | chr3.4:65422156-65422175 | None:intergenic | 40.0% | |
| CTTGCATCATAGACAGGATT+TGG | - | chr3.4:65422089-65422108 | None:intergenic | 40.0% | |
| GCATCAGTTAACCTGCAAAA+CGG | - | chr3.4:65421354-65421373 | None:intergenic | 40.0% | |
| GGAAATCAACAGAGACTGAT+CGG | - | chr3.4:65421227-65421246 | None:intergenic | 40.0% | |
| GTCGATAAATAGAAGATCCC+CGG | - | chr3.4:65422005-65422024 | None:intergenic | 40.0% | |
| TCGATAAATAGAAGATCCCC+GGG | - | chr3.4:65422004-65422023 | None:intergenic | 40.0% | |
| TGCAACTTGGAATTAACAGC+GGG | - | chr3.4:65422155-65422174 | None:intergenic | 40.0% | |
| TGGCAGAGTTTGCCTTATAT+GGG | + | chr3.4:65421786-65421805 | MS.gene05082:CDS | 40.0% | |
| TTAAACAACGGTATCCTCCA+GGG | + | chr3.4:65421724-65421743 | MS.gene05082:CDS | 40.0% | |
| TTCTCACTGACCATCTCATA+CGG | - | chr3.4:65421813-65421832 | None:intergenic | 40.0% | |
| TTTAAACAACGGTATCCTCC+AGG | + | chr3.4:65421723-65421742 | MS.gene05082:CDS | 40.0% | |
| ! | AAGAAGAAGACATCTAAGGC+TGG | + | chr3.4:65421831-65421850 | MS.gene05082:CDS | 40.0% |
| ! | AAGGCACACTGTTTTCTTGA+GGG | + | chr3.4:65422034-65422053 | MS.gene05082:CDS | 40.0% |
| ! | ACAACTTTTGTCCTGCAACT+TGG | - | chr3.4:65422168-65422187 | None:intergenic | 40.0% |
| ! | GAACAGCAATGACTTTGAGA+AGG | - | chr3.4:65421176-65421195 | None:intergenic | 40.0% |
| ! | GAATACACATTTGCTGAAGC+TGG | + | chr3.4:65421593-65421612 | MS.gene05082:CDS | 40.0% |
| ! | GGTTGTTGAGTGTTGTAAAG+AGG | + | chr3.4:65421665-65421684 | MS.gene05082:CDS | 40.0% |
| ! | GTCCATGTCTGCTTCTAAAA+CGG | + | chr3.4:65421455-65421474 | MS.gene05082:CDS | 40.0% |
| ! | TGGTCTTCCTGATGATTTTG+AGG | + | chr3.4:65421515-65421534 | MS.gene05082:CDS | 40.0% |
| !! | AAAGGCACACTGTTTTCTTG+AGG | + | chr3.4:65422033-65422052 | MS.gene05082:CDS | 40.0% |
| !! | ACCTTGAAAACAGCTCTAAG+AGG | - | chr3.4:65421483-65421502 | None:intergenic | 40.0% |
| !! | AGCTGTTTTCAAGGTTTGGA+GGG | + | chr3.4:65421488-65421507 | MS.gene05082:CDS | 40.0% |
| !! | TCCTCTTAGAGCTGTTTTCA+AGG | + | chr3.4:65421479-65421498 | MS.gene05082:CDS | 40.0% |
| !! | TCCTGATGATTTTGAGGACT+CGG | + | chr3.4:65421521-65421540 | MS.gene05082:CDS | 40.0% |
| !!! | AACCGTTTTAGAAGCAGACA+TGG | - | chr3.4:65421460-65421479 | None:intergenic | 40.0% |
| AAATGTGAGGAAACTTGCGG+AGG | - | chr3.4:65421299-65421318 | None:intergenic | 45.0% | |
| ACCGAGTCCTCAAAATCATC+AGG | - | chr3.4:65421525-65421544 | None:intergenic | 45.0% | |
| ACTCTGCCATTCCTTCACAT+TGG | - | chr3.4:65421775-65421794 | None:intergenic | 45.0% | |
| ATCTATTCTTGGATCACCCG+GGG | + | chr3.4:65421985-65422004 | MS.gene05082:CDS | 45.0% | |
| ATCTCATACGGCCCCATATA+AGG | - | chr3.4:65421801-65421820 | None:intergenic | 45.0% | |
| CGCTGTTAATTCCAAGTTGC+AGG | + | chr3.4:65422154-65422173 | MS.gene05082:CDS | 45.0% | |
| CTGTCTATGATGCAAGGAGA+AGG | + | chr3.4:65422093-65422112 | MS.gene05082:CDS | 45.0% | |
| CTTCTCCTTGCATCATAGAC+AGG | - | chr3.4:65422095-65422114 | None:intergenic | 45.0% | |
| GAACTTCAGAGCCAATGTGA+AGG | + | chr3.4:65421761-65421780 | MS.gene05082:CDS | 45.0% | |
| GATCTATTCTTGGATCACCC+GGG | + | chr3.4:65421984-65422003 | MS.gene05082:CDS | 45.0% | |
| GGAGTGCAGTGTTAATAGCA+TGG | + | chr3.4:65421686-65421705 | MS.gene05082:CDS | 45.0% | |
| GGATCTATTCTTGGATCACC+CGG | + | chr3.4:65421983-65422002 | MS.gene05082:CDS | 45.0% | |
| GGCAGAGTTTGCCTTATATG+GGG | + | chr3.4:65421787-65421806 | MS.gene05082:CDS | 45.0% | |
| TCAGAGCCAATGTGAAGGAA+TGG | + | chr3.4:65421766-65421785 | MS.gene05082:CDS | 45.0% | |
| TTAGAGCTGCTGTTGAGGAT+TGG | + | chr3.4:65421640-65421659 | MS.gene05082:CDS | 45.0% | |
| TTATATGGGGCCGTATGAGA+TGG | + | chr3.4:65421800-65421819 | MS.gene05082:CDS | 45.0% | |
| TTGAGGGAAGCTTATGAACG+AGG | + | chr3.4:65422050-65422069 | MS.gene05082:CDS | 45.0% | |
| ! | AACAGAGACTGATCGGTTTC+TGG | - | chr3.4:65421220-65421239 | None:intergenic | 45.0% |
| ! | ACACATTTGCTGAAGCTGGT+TGG | + | chr3.4:65421597-65421616 | MS.gene05082:CDS | 45.0% |
| ! | ACAGAGACTGATCGGTTTCT+GGG | - | chr3.4:65421219-65421238 | None:intergenic | 45.0% |
| ! | GACATCTAAGGCTGGAATGA+TGG | + | chr3.4:65421839-65421858 | MS.gene05082:CDS | 45.0% |
| !! | GAGCTGTTTTCAAGGTTTGG+AGG | + | chr3.4:65421487-65421506 | MS.gene05082:CDS | 45.0% |
| !!! | TGGTTTTAGAGCTGCTGTTG+AGG | + | chr3.4:65421635-65421654 | MS.gene05082:CDS | 45.0% |
| ACGGTTAAGGTGGAGCTTCT+GGG | - | chr3.4:65421262-65421281 | None:intergenic | 50.0% | |
| AGCTGCTGTTGAGGATTGGA+GGG | + | chr3.4:65421644-65421663 | MS.gene05082:CDS | 50.0% | |
| CAAAACGGCTGCAACTTGGA+AGG | - | chr3.4:65421339-65421358 | None:intergenic | 50.0% | |
| GGACAAAAGTTGTGGCAACG+AGG | + | chr3.4:65422175-65422194 | MS.gene05082:CDS | 50.0% | |
| GTGGCAACGAGGTTGAACAA+GGG | + | chr3.4:65422186-65422205 | MS.gene05082:CDS | 50.0% | |
| TGGCAACGAGGTTGAACAAG+GGG | + | chr3.4:65422187-65422206 | MS.gene05082:CDS | 50.0% | |
| TGTGGCAACGAGGTTGAACA+AGG | + | chr3.4:65422185-65422204 | MS.gene05082:CDS | 50.0% | |
| TGTTTCTCGCCTTGAAGCTG+AGG | + | chr3.4:65421383-65421402 | MS.gene05082:CDS | 50.0% | |
| TTCAAGGTTTGGAGGGAGCT+TGG | + | chr3.4:65421495-65421514 | MS.gene05082:CDS | 50.0% | |
| ! | CAGAGACTGATCGGTTTCTG+GGG | - | chr3.4:65421218-65421237 | None:intergenic | 50.0% |
| ! | TAAGGCTGGAATGATGGCGA+TGG | + | chr3.4:65421845-65421864 | MS.gene05082:CDS | 50.0% |
| !! | AGCAGCTCTAAAACCACTGC+TGG | - | chr3.4:65421631-65421650 | None:intergenic | 50.0% |
| !! | ATCGGTTTCTGGGGTTAGCA+AGG | - | chr3.4:65421209-65421228 | None:intergenic | 50.0% |
| !! | CTTGTTGCTTTAGAACGCCG+TGG | + | chr3.4:65422125-65422144 | MS.gene05082:CDS | 50.0% |
| !! | GCAGCTCTAAAACCACTGCT+GGG | - | chr3.4:65421630-65421649 | None:intergenic | 50.0% |
| AAACTTGCGGAGGAAGGCAG+TGG | - | chr3.4:65421289-65421308 | None:intergenic | 55.0% | |
| AACGGTATCCTCCAGGGATG+CGG | + | chr3.4:65421730-65421749 | MS.gene05082:CDS | 55.0% | |
| CACGGTTAAGGTGGAGCTTC+TGG | - | chr3.4:65421263-65421282 | None:intergenic | 55.0% | |
| CAGAAGCTCCACCTTAACCG+TGG | + | chr3.4:65421261-65421280 | MS.gene05082:CDS | 55.0% | |
| CCTGCAAAACGGCTGCAACT+TGG | - | chr3.4:65421343-65421362 | None:intergenic | 55.0% | |
| GAGCTGCTGTTGAGGATTGG+AGG | + | chr3.4:65421643-65421662 | MS.gene05082:CDS | 55.0% | |
| GTGAGGAAACTTGCGGAGGA+AGG | - | chr3.4:65421295-65421314 | None:intergenic | 55.0% | |
| TTCTTGCTCAACCGCATCCC+TGG | - | chr3.4:65421744-65421763 | None:intergenic | 55.0% | |
| ! | GCTTCTGGGAGAGATTGGAG+AGG | - | chr3.4:65421248-65421267 | None:intergenic | 55.0% |
| ! | GTGGAGCTTCTGGGAGAGAT+TGG | - | chr3.4:65421253-65421272 | None:intergenic | 55.0% |
| !! | CCAAGTTGCAGCCGTTTTGC+AGG | + | chr3.4:65421340-65421359 | MS.gene05082:CDS | 55.0% |
| !! | GTTGGTGATGTTCCCAGCAG+TGG | + | chr3.4:65421615-65421634 | MS.gene05082:CDS | 55.0% |
| AGGCAGTGGCACCACGGTTA+AGG | - | chr3.4:65421275-65421294 | None:intergenic | 60.0% | |
| CAGTGGCACCACGGTTAAGG+TGG | - | chr3.4:65421272-65421291 | None:intergenic | 60.0% | |
| GATGGCGATGGAGAAGCGAG+CGG | + | chr3.4:65421857-65421876 | MS.gene05082:CDS | 60.0% | |
| TTGCTCAACCGCATCCCTGG+AGG | - | chr3.4:65421741-65421760 | None:intergenic | 60.0% | |
| GGAGGAAGGCAGTGGCACCA+CGG | - | chr3.4:65421281-65421300 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65421156 | 65422250 | 65421156 | ID=MS.gene05082 |
| chr3.4 | mRNA | 65421156 | 65422250 | 65421156 | ID=MS.gene05082.t1;Parent=MS.gene05082 |
| chr3.4 | exon | 65421156 | 65422250 | 65421156 | ID=MS.gene05082.t1.exon1;Parent=MS.gene05082.t1 |
| chr3.4 | CDS | 65421156 | 65422250 | 65421156 | ID=cds.MS.gene05082.t1;Parent=MS.gene05082.t1 |
| Gene Sequence |
| Protein sequence |
