AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049632

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049632.t1 MTR_3g063230 95.294 425 20 0 1 425 1 425 0.0 851
MS.gene049632.t1 MTR_3g063230 90.118 425 18 1 1 425 1 401 0.0 791
MS.gene049632.t1 MTR_7g088530 39.067 343 197 3 49 391 43 373 1.87e-74 239
MS.gene049632.t1 MTR_6g033595 36.219 439 240 12 19 423 8 440 1.32e-67 222
MS.gene049632.t1 MTR_2g067960 36.957 322 195 6 74 391 35 352 6.90e-52 180
MS.gene049632.t1 MTR_1g032040 30.861 337 218 6 54 386 37 362 1.27e-43 157
MS.gene049632.t1 MTR_1g032380 30.861 337 218 6 54 386 37 362 1.27e-43 157
MS.gene049632.t1 MTR_1g072550 28.643 398 263 9 17 410 5 385 3.26e-39 145
MS.gene049632.t1 MTR_6g043850 26.702 382 228 9 54 421 32 375 2.60e-33 132
MS.gene049632.t1 MTR_7g107280 29.825 342 219 9 46 381 30 356 3.01e-33 129
MS.gene049632.t1 MTR_4g053720 28.453 362 214 10 48 387 17 355 6.90e-32 124
MS.gene049632.t1 MTR_3g105530 27.151 372 234 7 38 391 20 372 4.73e-30 120
MS.gene049632.t1 MTR_7g117270 25.180 417 279 11 15 419 55 450 7.98e-30 121
MS.gene049632.t1 MTR_7g018630 26.250 320 222 6 68 386 69 375 6.28e-26 109
MS.gene049632.t1 MTR_1g019170 23.274 391 240 8 30 394 3 359 6.04e-25 106
MS.gene049632.t1 MTR_3g029990 23.846 390 237 9 31 394 4 359 1.72e-24 106
MS.gene049632.t1 MTR_3g029990 23.846 390 237 9 31 394 4 359 2.06e-24 106
MS.gene049632.t1 MTR_8g089370 26.452 310 211 6 106 411 92 388 1.16e-23 102
MS.gene049632.t1 MTR_1g098960 23.664 393 238 10 30 394 3 361 2.24e-23 101
MS.gene049632.t1 MTR_3g083350 24.870 386 236 13 37 385 21 389 1.98e-19 90.9
MS.gene049632.t1 MTR_3g030020 23.397 312 192 6 103 394 32 316 2.41e-19 89.4
MS.gene049632.t1 MTR_0153s0070 23.487 413 228 9 43 421 2 360 7.37e-19 88.2
MS.gene049632.t1 MTR_0153s0070 24.540 326 209 7 40 347 29 335 2.21e-17 83.2
MS.gene049632.t1 MTR_3g074730 24.927 341 230 13 42 374 49 371 5.72e-14 73.6
MS.gene049632.t1 MTR_3g448960 21.120 393 223 12 30 394 3 336 3.36e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049632.t1 AT1G06440 70.868 357 100 3 39 392 21 376 0.0 521
MS.gene049632.t1 AT4G33495 38.936 357 208 5 41 391 35 387 8.71e-76 242
MS.gene049632.t1 AT5G45790 34.987 383 233 4 9 391 29 395 8.88e-74 238
MS.gene049632.t1 AT5G45790 38.742 302 173 3 90 391 21 310 1.68e-68 221
MS.gene049632.t1 AT4G24320 29.178 353 233 9 48 392 18 361 8.79e-36 136
MS.gene049632.t1 AT3G58520 29.640 361 222 9 26 375 17 356 1.16e-34 133
MS.gene049632.t1 AT2G31290 25.964 389 242 8 51 418 27 390 1.98e-34 132
MS.gene049632.t1 AT2G31290 25.964 389 242 8 51 418 27 390 1.98e-34 132
MS.gene049632.t1 AT3G58520 30.030 333 199 7 53 375 36 344 8.87e-33 128
MS.gene049632.t1 AT2G39120 27.520 367 250 6 23 386 2 355 3.93e-32 126
MS.gene049632.t1 AT5G21970 27.020 396 251 11 37 408 38 419 1.83e-31 125
MS.gene049632.t1 AT5G21970 27.020 396 251 11 37 408 38 419 1.83e-31 125
MS.gene049632.t1 AT3G63090 29.524 315 198 7 81 386 66 365 4.57e-31 123
MS.gene049632.t1 AT5G48040 28.000 350 208 9 53 386 40 361 1.36e-30 122
MS.gene049632.t1 AT1G71850 25.337 371 257 8 43 406 22 379 1.50e-30 123
MS.gene049632.t1 AT4G01037 27.049 366 245 10 52 410 78 428 5.44e-30 122
MS.gene049632.t1 AT1G79120 28.231 294 186 5 107 387 115 396 1.40e-28 116
MS.gene049632.t1 AT1G79120 28.231 294 186 5 107 387 115 396 1.40e-28 116
MS.gene049632.t1 AT5G62990 24.207 347 236 8 53 386 60 392 3.06e-21 96.3
MS.gene049632.t1 AT4G08940 25.588 340 226 14 41 374 56 374 1.69e-13 72.0

Find 97 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCAGAGTTTGCCTTATA+TGG 0.183804 3.2:+59242522 MS.gene049632:CDS
AACAGAGACTGATCGGTTTC+TGG 0.240773 3.2:-59241954 None:intergenic
AGATAAGCCAATTTAGAAAA+TGG 0.242614 3.2:+59242674 MS.gene049632:CDS
CTTGCATCATAGACAGGATT+TGG 0.284743 3.2:-59242823 None:intergenic
TAATATAAGGGATCTATTCT+TGG 0.287223 3.2:+59242711 MS.gene049632:CDS
TTCTTGCTCAACCGCATTCC+TGG 0.288574 3.2:-59242478 None:intergenic
CCCCACTTTCGAGAAACTTA+TGG 0.293848 3.2:+59241874 MS.gene049632:CDS
ATCTGTCGACAAAGGGTAAA+AGG 0.299149 3.2:+59242752 MS.gene049632:CDS
ATCTCATACGGCCCCATATA+AGG 0.303643 3.2:-59242535 None:intergenic
AGCTGTTAATTCCAAGTTGC+AGG 0.346075 3.2:+59242891 MS.gene049632:CDS
CATTAATAGCCTCAGCTTCA+AGG 0.360957 3.2:-59242129 None:intergenic
CTTTGCCTCTTGTTGTTGAA+AGG 0.364008 3.2:+59242155 MS.gene049632:CDS
GAGCTCGTGAATTTACATAT+TGG 0.375257 3.2:-59241847 None:intergenic
AGGCAGTGGCACCGCGGTTA+AGG 0.379733 3.2:-59242009 None:intergenic
AAAGAGGTCGCTCACTCAAA+TGG 0.385463 3.2:+59241733 MS.gene049632:CDS
GTGGAGCTTCTGAGAGAGAT+TGG 0.399486 3.2:-59241987 None:intergenic
ACAGAGACTGATCGGTTTCT+GGG 0.402437 3.2:-59241953 None:intergenic
AGCCAATTTAGAAAATGGTT+TGG 0.404374 3.2:+59242679 MS.gene049632:CDS
TTCAAGGTTTGGAGGGAGCT+TGG 0.404473 3.2:+59242232 MS.gene049632:CDS
ATCCATAAGTTTCTCGAAAG+TGG 0.410175 3.2:-59241876 None:intergenic
TGAGAAGAAGAAGACATCTA+AGG 0.415354 3.2:+59242564 MS.gene049632:CDS
TGGCAGAGTTTGCCTTATAT+GGG 0.419505 3.2:+59242523 MS.gene049632:CDS
GAGCTGCTGTTGAGGATTGG+AGG 0.431533 3.2:+59242380 MS.gene049632:CDS
TTAGAGCTGCTGTTGAGGAT+TGG 0.433013 3.2:+59242377 MS.gene049632:CDS
TTCTGGGGTTAGCAAGGATA+AGG 0.433285 3.2:-59241937 None:intergenic
TTGTTGTTGAAAGGCTTGTT+CGG 0.434863 3.2:+59242164 MS.gene049632:CDS
GCAGCTCTAAAACCATTGTT+AGG 0.443938 3.2:-59242364 None:intergenic
TCCATAAGTTTCTCGAAAGT+GGG 0.452415 3.2:-59241875 None:intergenic
AGCTCTAAGAGGAACCGTTC+TGG 0.460122 3.2:-59242206 None:intergenic
CCTGCAAAACGGTTGCAACT+TGG 0.463043 3.2:-59242077 None:intergenic
CTTCTCCTTGCATCATAGAC+AGG 0.474197 3.2:-59242829 None:intergenic
GACATCTAAGGCTGGAATGA+TGG 0.476618 3.2:+59242576 MS.gene049632:CDS
ACTGAGTCCTCAAAATCATC+AGG 0.479936 3.2:-59242259 None:intergenic
GAGTTTAACAGTGGAAAAGA+TGG 0.482154 3.2:+59242639 MS.gene049632:CDS
CATTTCCATGTTATTAACAC+TGG 0.487060 3.2:-59242428 None:intergenic
AAGAGGTCGCTCACTCAAAT+GGG 0.488339 3.2:+59241734 MS.gene049632:CDS
GGATCTATTCTTGGATCACC+CGG 0.492833 3.2:+59242720 MS.gene049632:CDS
AGCTGCTGTTGAGGATTGGA+GGG 0.511698 3.2:+59242381 MS.gene049632:CDS
ACCTTGAAAACAGCTCTAAG+AGG 0.512545 3.2:-59242217 None:intergenic
TTTAAACAACGGTATCCTCC+AGG 0.515381 3.2:+59242460 MS.gene049632:CDS
GTCGACAGATAGAAGATCCC+CGG 0.523665 3.2:-59242739 None:intergenic
ATCTTCTATCTGTCGACAAA+GGG 0.524672 3.2:+59242745 MS.gene049632:CDS
GGTTGTCAAGTGTTGTAAAG+AGG 0.527201 3.2:+59242402 MS.gene049632:CDS
AAGAAGAAGACATCTAAGGC+TGG 0.541329 3.2:+59242568 MS.gene049632:CDS
CAGTGGCACCGCGGTTAAGG+TGG 0.542087 3.2:-59242006 None:intergenic
ATCGGTTTCTGGGGTTAGCA+AGG 0.543715 3.2:-59241943 None:intergenic
CTGTCTATGATGCAAGGAGA+AGG 0.546551 3.2:+59242830 MS.gene049632:CDS
CAAAACGGTTGCAACTTGGA+AGG 0.547958 3.2:-59242073 None:intergenic
GTGAGGAAACTTGCGGAGGA+AGG 0.548834 3.2:-59242029 None:intergenic
GAATACTCATCTGTTGAAGC+TGG 0.549824 3.2:+59242330 MS.gene049632:CDS
GTTGGTGATGTTCCTAACAA+TGG 0.550594 3.2:+59242352 MS.gene049632:CDS
TGCAACTTGGAATTAACAGC+TGG 0.550838 3.2:-59242889 None:intergenic
GTCTATGTCTGCTTCCAGAA+CGG 0.551888 3.2:+59242192 MS.gene049632:CDS
TCAGAGCCAATGTGAAGGAA+TGG 0.559863 3.2:+59242503 MS.gene049632:CDS
TGTTTCGCGCCTTGAAGCTG+AGG 0.561881 3.2:+59242120 MS.gene049632:CDS
AAACTTGCGGAGGAAGGCAG+TGG 0.562183 3.2:-59242023 None:intergenic
GGAATTCAACAGAGACTGAT+CGG 0.563326 3.2:-59241961 None:intergenic
TTCTCACTGACCATCTCATA+CGG 0.567104 3.2:-59242547 None:intergenic
ACTCATAAATTCATGAACAA+TGG 0.568519 3.2:-59242620 None:intergenic
TGAATTTATGAGTTTAACAG+TGG 0.570981 3.2:+59242630 MS.gene049632:CDS
TGTGGCAATGAGGTTGAACA+AGG 0.574826 3.2:+59242922 MS.gene049632:CDS
GAACGGCAATGACTTTGAGA+AGG 0.579886 3.2:-59241910 None:intergenic
GCATCAGTTAACCTGCAAAA+CGG 0.580749 3.2:-59242088 None:intergenic
GATCTTCTATCTGTCGACAA+AGG 0.581795 3.2:+59242744 MS.gene049632:CDS
ACAAGCCTTTCAACAACAAG+AGG 0.582092 3.2:-59242160 None:intergenic
TTTAACAGTGGAAAAGATGG+TGG 0.585164 3.2:+59242642 MS.gene049632:CDS
CAAATCCTGTCTATGATGCA+AGG 0.586740 3.2:+59242824 MS.gene049632:CDS
TTATATGGGGCCGTATGAGA+TGG 0.596699 3.2:+59242537 MS.gene049632:CDS
GTGTTAATAACATGGAAATG+AGG 0.599923 3.2:+59242431 MS.gene049632:CDS
ACTCATCTGTTGAAGCTGGT+TGG 0.601190 3.2:+59242334 MS.gene049632:CDS
AAGTTGCAGGACAAAAGTTG+TGG 0.601248 3.2:+59242904 MS.gene049632:CDS
AGCAAGGATAAGGTCTTGAA+CGG 0.602317 3.2:-59241927 None:intergenic
TAAGGCTGGAATGATGGCGA+TGG 0.602790 3.2:+59242582 MS.gene049632:CDS
TCGACAGATAGAAGATCCCC+GGG 0.609533 3.2:-59242738 None:intergenic
GGCAGAGTTTGCCTTATATG+GGG 0.613431 3.2:+59242524 MS.gene049632:CDS
CAGAGACTGATCGGTTTCTG+GGG 0.613837 3.2:-59241952 None:intergenic
GGATTCCAGTGTTAATAACA+TGG 0.614807 3.2:+59242423 MS.gene049632:CDS
TGGCAATGAGGTTGAACAAG+GGG 0.619354 3.2:+59242924 MS.gene049632:CDS
ACTCTGCCATTCCTTCACAT+TGG 0.624053 3.2:-59242509 None:intergenic
GAACTTCAGAGCCAATGTGA+AGG 0.627730 3.2:+59242498 MS.gene049632:CDS
CCATAAGTTTCTCGAAAGTG+GGG 0.627913 3.2:-59241874 None:intergenic
GATCTATTCTTGGATCACCC+GGG 0.631074 3.2:+59242721 MS.gene049632:CDS
ATCTATTCTTGGATCACCCG+GGG 0.642117 3.2:+59242722 MS.gene049632:CDS
AACGGTATCCTCCAGGAATG+CGG 0.645784 3.2:+59242467 MS.gene049632:CDS
TTGAGGGAAGCTTATGAACG+AGG 0.648422 3.2:+59242787 MS.gene049632:CDS
CAAAGATGTGAGGAAACTTG+CGG 0.653222 3.2:-59242036 None:intergenic
CTTGTTGCTTTAGAACGCCG+TGG 0.656804 3.2:+59242862 MS.gene049632:CDS
GTGGCAATGAGGTTGAACAA+GGG 0.673362 3.2:+59242923 MS.gene049632:CDS
TTGCTCAACCGCATTCCTGG+AGG 0.673617 3.2:-59242475 None:intergenic
TAGTAAATATCAAAGATGTG+AGG 0.685693 3.2:-59242046 None:intergenic
GGACAAAAGTTGTGGCAATG+AGG 0.687120 3.2:+59242912 MS.gene049632:CDS
GCTTCTGAGAGAGATTGGAG+AGG 0.688059 3.2:-59241982 None:intergenic
AATTAACAGCTGGTAAACCA+CGG 0.700188 3.2:-59242879 None:intergenic
GATGGCGATGGAGAAGCGAG+CGG 0.722066 3.2:+59242594 MS.gene049632:CDS
CAGAAGCTCCACCTTAACCG+CGG 0.723603 3.2:+59241998 MS.gene049632:CDS
AGATGTGAGGAAACTTGCGG+AGG 0.742899 3.2:-59242033 None:intergenic
GGAGGAAGGCAGTGGCACCG+CGG 0.765914 3.2:-59242015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGTATTGATTTTAATATAA+GGG + chr3.2:59242699-59242718 MS.gene049632:CDS 15.0%
!!! TTGGTATTGATTTTAATATA+AGG + chr3.2:59242698-59242717 MS.gene049632:CDS 15.0%
! ACTCATAAATTCATGAACAA+TGG - chr3.2:59242623-59242642 None:intergenic 25.0%
! AGATAAGCCAATTTAGAAAA+TGG + chr3.2:59242674-59242693 MS.gene049632:CDS 25.0%
! TAATATAAGGGATCTATTCT+TGG + chr3.2:59242711-59242730 MS.gene049632:CDS 25.0%
! TAGTAAATATCAAAGATGTG+AGG - chr3.2:59242049-59242068 None:intergenic 25.0%
! TGAATTTATGAGTTTAACAG+TGG + chr3.2:59242630-59242649 MS.gene049632:CDS 25.0%
!! TACCAAACCATTTTCTAAAT+TGG - chr3.2:59242684-59242703 None:intergenic 25.0%
!!! TGAGGTATAGTTTTAAACAA+CGG + chr3.2:59242449-59242468 MS.gene049632:CDS 25.0%
!!! TTGATTTTGATGTTTGTGTT+GGG - chr3.2:59241783-59241802 None:intergenic 25.0%
AGCCAATTTAGAAAATGGTT+TGG + chr3.2:59242679-59242698 MS.gene049632:CDS 30.0%
CATTTCCATGTTATTAACAC+TGG - chr3.2:59242431-59242450 None:intergenic 30.0%
GTGTTAATAACATGGAAATG+AGG + chr3.2:59242431-59242450 MS.gene049632:CDS 30.0%
!! ACCTCTTTTTCATGAAAACT+CGG - chr3.2:59241721-59241740 None:intergenic 30.0%
!! GTTGATTTTGATGTTTGTGT+TGG - chr3.2:59241784-59241803 None:intergenic 30.0%
AATTAACAGCTGGTAAACCA+CGG - chr3.2:59242882-59242901 None:intergenic 35.0%
ATCCATAAGTTTCTCGAAAG+TGG - chr3.2:59241879-59241898 None:intergenic 35.0%
ATCTTCTATCTGTCGACAAA+GGG + chr3.2:59242745-59242764 MS.gene049632:CDS 35.0%
GAGCTCGTGAATTTACATAT+TGG - chr3.2:59241850-59241869 None:intergenic 35.0%
GAGTTTAACAGTGGAAAAGA+TGG + chr3.2:59242639-59242658 MS.gene049632:CDS 35.0%
GGATTCCAGTGTTAATAACA+TGG + chr3.2:59242423-59242442 MS.gene049632:CDS 35.0%
TCCATAAGTTTCTCGAAAGT+GGG - chr3.2:59241878-59241897 None:intergenic 35.0%
TGAGAAGAAGAAGACATCTA+AGG + chr3.2:59242564-59242583 MS.gene049632:CDS 35.0%
TTTAACAGTGGAAAAGATGG+TGG + chr3.2:59242642-59242661 MS.gene049632:CDS 35.0%
! ACCGAGTTTTCATGAAAAAG+AGG + chr3.2:59241717-59241736 MS.gene049632:CDS 35.0%
! TTGTTGTTGAAAGGCTTGTT+CGG + chr3.2:59242164-59242183 MS.gene049632:CDS 35.0%
!! TGTTTTTCAGCTTTGTGATG+CGG + chr3.2:59242300-59242319 MS.gene049632:CDS 35.0%
!! TTAGAGCTGTTTTCAAGGTT+TGG + chr3.2:59242221-59242240 MS.gene049632:CDS 35.0%
AAGTTGCAGGACAAAAGTTG+TGG + chr3.2:59242904-59242923 MS.gene049632:CDS 40.0%
ACAAGCCTTTCAACAACAAG+AGG - chr3.2:59242163-59242182 None:intergenic 40.0%
ACTGAGTCCTCAAAATCATC+AGG - chr3.2:59242262-59242281 None:intergenic 40.0%
AGCAAGGATAAGGTCTTGAA+CGG - chr3.2:59241930-59241949 None:intergenic 40.0%
AGCTGTTAATTCCAAGTTGC+AGG + chr3.2:59242891-59242910 MS.gene049632:CDS 40.0%
ATCTGTCGACAAAGGGTAAA+AGG + chr3.2:59242752-59242771 MS.gene049632:CDS 40.0%
ATGGCAGAGTTTGCCTTATA+TGG + chr3.2:59242522-59242541 MS.gene049632:CDS 40.0%
CAAAGATGTGAGGAAACTTG+CGG - chr3.2:59242039-59242058 None:intergenic 40.0%
CAAATCCTGTCTATGATGCA+AGG + chr3.2:59242824-59242843 MS.gene049632:CDS 40.0%
CATTAATAGCCTCAGCTTCA+AGG - chr3.2:59242132-59242151 None:intergenic 40.0%
CCATAAGTTTCTCGAAAGTG+GGG - chr3.2:59241877-59241896 None:intergenic 40.0%
CTTGCATCATAGACAGGATT+TGG - chr3.2:59242826-59242845 None:intergenic 40.0%
GAATACTCATCTGTTGAAGC+TGG + chr3.2:59242330-59242349 MS.gene049632:CDS 40.0%
GATCTTCTATCTGTCGACAA+AGG + chr3.2:59242744-59242763 MS.gene049632:CDS 40.0%
GCATCAGTTAACCTGCAAAA+CGG - chr3.2:59242091-59242110 None:intergenic 40.0%
GGAATTCAACAGAGACTGAT+CGG - chr3.2:59241964-59241983 None:intergenic 40.0%
TGCAACTTGGAATTAACAGC+TGG - chr3.2:59242892-59242911 None:intergenic 40.0%
TGGCAGAGTTTGCCTTATAT+GGG + chr3.2:59242523-59242542 MS.gene049632:CDS 40.0%
TTCTCACTGACCATCTCATA+CGG - chr3.2:59242550-59242569 None:intergenic 40.0%
TTTAAACAACGGTATCCTCC+AGG + chr3.2:59242460-59242479 MS.gene049632:CDS 40.0%
! AAGAAGAAGACATCTAAGGC+TGG + chr3.2:59242568-59242587 MS.gene049632:CDS 40.0%
! AAGGCACACTGTTTTCTTGA+GGG + chr3.2:59242771-59242790 MS.gene049632:CDS 40.0%
! ACAACTTTTGTCCTGCAACT+TGG - chr3.2:59242905-59242924 None:intergenic 40.0%
! GGTTGTCAAGTGTTGTAAAG+AGG + chr3.2:59242402-59242421 MS.gene049632:CDS 40.0%
! TGGTCTTCCTGATGATTTTG+AGG + chr3.2:59242252-59242271 MS.gene049632:CDS 40.0%
!! AAAGGCACACTGTTTTCTTG+AGG + chr3.2:59242770-59242789 MS.gene049632:CDS 40.0%
!! ACCTTGAAAACAGCTCTAAG+AGG - chr3.2:59242220-59242239 None:intergenic 40.0%
!! AGCTGTTTTCAAGGTTTGGA+GGG + chr3.2:59242225-59242244 MS.gene049632:CDS 40.0%
!! CTTTGCCTCTTGTTGTTGAA+AGG + chr3.2:59242155-59242174 MS.gene049632:CDS 40.0%
!! GCAGCTCTAAAACCATTGTT+AGG - chr3.2:59242367-59242386 None:intergenic 40.0%
!! GTTGGTGATGTTCCTAACAA+TGG + chr3.2:59242352-59242371 MS.gene049632:CDS 40.0%
!! TCCTCTTAGAGCTGTTTTCA+AGG + chr3.2:59242216-59242235 MS.gene049632:CDS 40.0%
AAAGAGGTCGCTCACTCAAA+TGG + chr3.2:59241733-59241752 MS.gene049632:CDS 45.0%
AAGAGGTCGCTCACTCAAAT+GGG + chr3.2:59241734-59241753 MS.gene049632:CDS 45.0%
ACTCATCTGTTGAAGCTGGT+TGG + chr3.2:59242334-59242353 MS.gene049632:CDS 45.0%
ACTCTGCCATTCCTTCACAT+TGG - chr3.2:59242512-59242531 None:intergenic 45.0%
ATCTATTCTTGGATCACCCG+GGG + chr3.2:59242722-59242741 MS.gene049632:CDS 45.0%
ATCTCATACGGCCCCATATA+AGG - chr3.2:59242538-59242557 None:intergenic 45.0%
CAAAACGGTTGCAACTTGGA+AGG - chr3.2:59242076-59242095 None:intergenic 45.0%
CCCCACTTTCGAGAAACTTA+TGG + chr3.2:59241874-59241893 MS.gene049632:CDS 45.0%
CTGTCTATGATGCAAGGAGA+AGG + chr3.2:59242830-59242849 MS.gene049632:CDS 45.0%
CTTCTCCTTGCATCATAGAC+AGG - chr3.2:59242832-59242851 None:intergenic 45.0%
GAACTTCAGAGCCAATGTGA+AGG + chr3.2:59242498-59242517 MS.gene049632:CDS 45.0%
GATCTATTCTTGGATCACCC+GGG + chr3.2:59242721-59242740 MS.gene049632:CDS 45.0%
GGACAAAAGTTGTGGCAATG+AGG + chr3.2:59242912-59242931 MS.gene049632:CDS 45.0%
GGATCTATTCTTGGATCACC+CGG + chr3.2:59242720-59242739 MS.gene049632:CDS 45.0%
GGCAGAGTTTGCCTTATATG+GGG + chr3.2:59242524-59242543 MS.gene049632:CDS 45.0%
GTCTATGTCTGCTTCCAGAA+CGG + chr3.2:59242192-59242211 MS.gene049632:CDS 45.0%
GTGGCAATGAGGTTGAACAA+GGG + chr3.2:59242923-59242942 MS.gene049632:CDS 45.0%
TCAGAGCCAATGTGAAGGAA+TGG + chr3.2:59242503-59242522 MS.gene049632:CDS 45.0%
TGGCAATGAGGTTGAACAAG+GGG + chr3.2:59242924-59242943 MS.gene049632:CDS 45.0%
TGTGGCAATGAGGTTGAACA+AGG + chr3.2:59242922-59242941 MS.gene049632:CDS 45.0%
TTAGAGCTGCTGTTGAGGAT+TGG + chr3.2:59242377-59242396 MS.gene049632:CDS 45.0%
TTATATGGGGCCGTATGAGA+TGG + chr3.2:59242537-59242556 MS.gene049632:CDS 45.0%
TTGAGGGAAGCTTATGAACG+AGG + chr3.2:59242787-59242806 MS.gene049632:CDS 45.0%
! AACAGAGACTGATCGGTTTC+TGG - chr3.2:59241957-59241976 None:intergenic 45.0%
! ACAGAGACTGATCGGTTTCT+GGG - chr3.2:59241956-59241975 None:intergenic 45.0%
! GAACGGCAATGACTTTGAGA+AGG - chr3.2:59241913-59241932 None:intergenic 45.0%
! GACATCTAAGGCTGGAATGA+TGG + chr3.2:59242576-59242595 MS.gene049632:CDS 45.0%
!! GAGCTGTTTTCAAGGTTTGG+AGG + chr3.2:59242224-59242243 MS.gene049632:CDS 45.0%
!! TTCTGGGGTTAGCAAGGATA+AGG - chr3.2:59241940-59241959 None:intergenic 45.0%
!!! TGGTTTTAGAGCTGCTGTTG+AGG + chr3.2:59242372-59242391 MS.gene049632:CDS 45.0%
AACGGTATCCTCCAGGAATG+CGG + chr3.2:59242467-59242486 MS.gene049632:CDS 50.0%
AGATGTGAGGAAACTTGCGG+AGG - chr3.2:59242036-59242055 None:intergenic 50.0%
AGCTGCTGTTGAGGATTGGA+GGG + chr3.2:59242381-59242400 MS.gene049632:CDS 50.0%
CCTGCAAAACGGTTGCAACT+TGG - chr3.2:59242080-59242099 None:intergenic 50.0%
GTCGACAGATAGAAGATCCC+CGG - chr3.2:59242742-59242761 None:intergenic 50.0%
TCGACAGATAGAAGATCCCC+GGG - chr3.2:59242741-59242760 None:intergenic 50.0%
TTCAAGGTTTGGAGGGAGCT+TGG + chr3.2:59242232-59242251 MS.gene049632:CDS 50.0%
TTCTTGCTCAACCGCATTCC+TGG - chr3.2:59242481-59242500 None:intergenic 50.0%
! CAGAGACTGATCGGTTTCTG+GGG - chr3.2:59241955-59241974 None:intergenic 50.0%
! CCAAGTTGCAACCGTTTTGC+AGG + chr3.2:59242077-59242096 MS.gene049632:CDS 50.0%
! GCTTCTGAGAGAGATTGGAG+AGG - chr3.2:59241985-59242004 None:intergenic 50.0%
! GTGGAGCTTCTGAGAGAGAT+TGG - chr3.2:59241990-59242009 None:intergenic 50.0%
! TAAGGCTGGAATGATGGCGA+TGG + chr3.2:59242582-59242601 MS.gene049632:CDS 50.0%
!! AGCTCTAAGAGGAACCGTTC+TGG - chr3.2:59242209-59242228 None:intergenic 50.0%
!! ATCGGTTTCTGGGGTTAGCA+AGG - chr3.2:59241946-59241965 None:intergenic 50.0%
!! CTTGTTGCTTTAGAACGCCG+TGG + chr3.2:59242862-59242881 MS.gene049632:CDS 50.0%
AAACTTGCGGAGGAAGGCAG+TGG - chr3.2:59242026-59242045 None:intergenic 55.0%
CAGAAGCTCCACCTTAACCG+CGG + chr3.2:59241998-59242017 MS.gene049632:CDS 55.0%
GAGCTGCTGTTGAGGATTGG+AGG + chr3.2:59242380-59242399 MS.gene049632:CDS 55.0%
GTGAGGAAACTTGCGGAGGA+AGG - chr3.2:59242032-59242051 None:intergenic 55.0%
TGTTTCGCGCCTTGAAGCTG+AGG + chr3.2:59242120-59242139 MS.gene049632:CDS 55.0%
TTGCTCAACCGCATTCCTGG+AGG - chr3.2:59242478-59242497 None:intergenic 55.0%
GATGGCGATGGAGAAGCGAG+CGG + chr3.2:59242594-59242613 MS.gene049632:CDS 60.0%
AGGCAGTGGCACCGCGGTTA+AGG - chr3.2:59242012-59242031 None:intergenic 65.0%
CAGTGGCACCGCGGTTAAGG+TGG - chr3.2:59242009-59242028 None:intergenic 65.0%
GGAGGAAGGCAGTGGCACCG+CGG - chr3.2:59242018-59242037 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 59241710 59242987 59241710 ID=MS.gene049632
chr3.2 mRNA 59241710 59242987 59241710 ID=MS.gene049632.t1;Parent=MS.gene049632
chr3.2 exon 59241710 59242987 59241710 ID=MS.gene049632.t1.exon1;Parent=MS.gene049632.t1
chr3.2 CDS 59241710 59242987 59241710 ID=cds.MS.gene049632.t1;Parent=MS.gene049632.t1
Gene Sequence

>MS.gene049632

ATGTCAAACCGAGTTTTCATGAAAAAGAGGTCGCTCACTCAAATGGGCACTAACATTGTGAACTTCTTAACCCAACACAAACATCAAAATCAACAACAAGCACTTTGTGTTTTCGTTCGATCAAAAACAACGTCTATCCAATATGTAAATTCACGAGCTCGAGACCCCACTTTCGAGAAACTTATGGATAAGTATAAAAACCTTCTCAAAGTCATTGCCGTTCAAGACCTTATCCTTGCTAACCCCAGAAACCGATCAGTCTCTGTTGAATTCCTCTCCAATCTCTCTCAGAAGCTCCACCTTAACCGCGGTGCCACTGCCTTCCTCCGCAAGTTTCCTCACATCTTTGATATTTACTATGAGCCTTCCAAGTTGCAACCGTTTTGCAGGTTAACTGATGCTGCTCTTGATGTTTCGCGCCTTGAAGCTGAGGCTATTAATGCTTCTTTGCCTCTTGTTGTTGAAAGGCTTGTTCGGATATTGTCTATGTCTGCTTCCAGAACGGTTCCTCTTAGAGCTGTTTTCAAGGTTTGGAGGGAGCTTGGTCTTCCTGATGATTTTGAGGACTCAGTTATAGCTGCTAATTCTAATGTTTTTCAGCTTTGTGATGCGGATGAACAGAATACTCATCTGTTGAAGCTGGTTGGTGATGTTCCTAACAATGGTTTTAGAGCTGCTGTTGAGGATTGGAGGGTTGTCAAGTGTTGTAAAGAGGATTCCAGTGTTAATAACATGGAAATGAGGTATAGTTTTAAACAACGGTATCCTCCAGGAATGCGGTTGAGCAAGAACTTCAGAGCCAATGTGAAGGAATGGCAGAGTTTGCCTTATATGGGGCCGTATGAGATGGTCAGTGAGAAGAAGAAGACATCTAAGGCTGGAATGATGGCGATGGAGAAGCGAGCGGTGTCCATTGTTCATGAATTTATGAGTTTAACAGTGGAAAAGATGGTGGAAGTTGAGAAGATAAGCCAATTTAGAAAATGGTTTGGTATTGATTTTAATATAAGGGATCTATTCTTGGATCACCCGGGGATCTTCTATCTGTCGACAAAGGGTAAAAGGCACACTGTTTTCTTGAGGGAAGCTTATGAACGAGGATGTTTGATACATCCAAATCCTGTCTATGATGCAAGGAGAAGGCTACTTGATCTTGTTGCTTTAGAACGCCGTGGTTTACCAGCTGTTAATTCCAAGTTGCAGGACAAAAGTTGTGGCAATGAGGTTGAACAAGGGGAAAACATGCAAAAACATGAATCGTTATCATCTTTTGACTAA
Protein sequence

>MS.gene049632.t1

MSNRVFMKKRSLTQMGTNIVNFLTQHKHQNQQQALCVFVRSKTTSIQYVNSRARDPTFEKLMDKYKNLLKVIAVQDLILANPRNRSVSVEFLSNLSQKLHLNRGATAFLRKFPHIFDIYYEPSKLQPFCRLTDAALDVSRLEAEAINASLPLVVERLVRILSMSASRTVPLRAVFKVWRELGLPDDFEDSVIAANSNVFQLCDADEQNTHLLKLVGDVPNNGFRAAVEDWRVVKCCKEDSSVNNMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLVALERRGLPAVNSKLQDKSCGNEVEQGENMQKHESLSSFD