Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55679.t1 | XP_013460525.1 | 95.3 | 425 | 20 | 0 | 1 | 425 | 1 | 425 | 1.70E-231 | 811.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55679.t1 | Q689D6 | 39.2 | 357 | 207 | 5 | 41 | 391 | 35 | 387 | 1.1e-61 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55679.t1 | A0A072UXM1 | 95.3 | 425 | 20 | 0 | 1 | 425 | 1 | 425 | 1.2e-231 | 811.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013931 | MS.gene55679 | PPI |
| MS.gene41893 | MS.gene55679 | PPI |
| MS.gene068083 | MS.gene55679 | PPI |
| MS.gene055711 | MS.gene55679 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55679.t1 | MTR_3g063230 | 95.294 | 425 | 20 | 0 | 1 | 425 | 1 | 425 | 0.0 | 852 |
| MS.gene55679.t1 | MTR_3g063230 | 90.118 | 425 | 18 | 1 | 1 | 425 | 1 | 401 | 0.0 | 791 |
| MS.gene55679.t1 | MTR_7g088530 | 39.067 | 343 | 197 | 3 | 49 | 391 | 43 | 373 | 1.99e-74 | 239 |
| MS.gene55679.t1 | MTR_6g033595 | 35.991 | 439 | 241 | 11 | 19 | 423 | 8 | 440 | 5.84e-68 | 223 |
| MS.gene55679.t1 | MTR_2g067960 | 36.646 | 322 | 196 | 5 | 74 | 391 | 35 | 352 | 4.01e-52 | 181 |
| MS.gene55679.t1 | MTR_1g032040 | 30.564 | 337 | 219 | 6 | 54 | 386 | 37 | 362 | 3.35e-43 | 156 |
| MS.gene55679.t1 | MTR_1g032380 | 30.564 | 337 | 219 | 6 | 54 | 386 | 37 | 362 | 3.35e-43 | 156 |
| MS.gene55679.t1 | MTR_1g072550 | 28.643 | 398 | 263 | 9 | 17 | 410 | 5 | 385 | 2.82e-39 | 145 |
| MS.gene55679.t1 | MTR_7g107280 | 29.825 | 342 | 219 | 9 | 46 | 381 | 30 | 356 | 2.08e-33 | 130 |
| MS.gene55679.t1 | MTR_6g043850 | 26.702 | 382 | 228 | 9 | 54 | 421 | 32 | 375 | 2.11e-33 | 132 |
| MS.gene55679.t1 | MTR_4g053720 | 28.453 | 362 | 214 | 10 | 48 | 387 | 17 | 355 | 7.87e-32 | 124 |
| MS.gene55679.t1 | MTR_3g105530 | 27.419 | 372 | 233 | 8 | 38 | 391 | 20 | 372 | 1.37e-30 | 122 |
| MS.gene55679.t1 | MTR_7g117270 | 25.420 | 417 | 278 | 11 | 15 | 419 | 55 | 450 | 5.08e-30 | 122 |
| MS.gene55679.t1 | MTR_7g018630 | 25.915 | 328 | 213 | 7 | 68 | 386 | 69 | 375 | 1.09e-25 | 108 |
| MS.gene55679.t1 | MTR_1g019170 | 23.274 | 391 | 240 | 8 | 30 | 394 | 3 | 359 | 5.59e-25 | 106 |
| MS.gene55679.t1 | MTR_3g029990 | 24.112 | 394 | 236 | 10 | 27 | 394 | 3 | 359 | 1.51e-24 | 106 |
| MS.gene55679.t1 | MTR_3g029990 | 24.112 | 394 | 236 | 10 | 27 | 394 | 3 | 359 | 1.73e-24 | 106 |
| MS.gene55679.t1 | MTR_8g089370 | 26.460 | 291 | 198 | 5 | 106 | 393 | 92 | 369 | 9.50e-24 | 102 |
| MS.gene55679.t1 | MTR_1g098960 | 23.664 | 393 | 238 | 10 | 30 | 394 | 3 | 361 | 1.87e-23 | 102 |
| MS.gene55679.t1 | MTR_3g030020 | 24.516 | 310 | 191 | 7 | 103 | 394 | 32 | 316 | 9.39e-20 | 90.5 |
| MS.gene55679.t1 | MTR_0153s0070 | 23.729 | 413 | 227 | 10 | 43 | 421 | 2 | 360 | 2.28e-19 | 89.7 |
| MS.gene55679.t1 | MTR_3g083350 | 24.740 | 384 | 239 | 12 | 37 | 385 | 21 | 389 | 4.95e-19 | 89.7 |
| MS.gene55679.t1 | MTR_0153s0070 | 24.847 | 326 | 208 | 8 | 40 | 347 | 29 | 335 | 7.23e-18 | 84.7 |
| MS.gene55679.t1 | MTR_3g074730 | 24.633 | 341 | 231 | 12 | 42 | 374 | 49 | 371 | 3.06e-14 | 74.3 |
| MS.gene55679.t1 | MTR_3g448960 | 21.120 | 393 | 223 | 12 | 30 | 394 | 3 | 336 | 2.89e-13 | 71.6 |
| MS.gene55679.t1 | MTR_8g102038 | 26.601 | 203 | 137 | 5 | 119 | 316 | 43 | 238 | 8.78e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55679.t1 | AT1G06440 | 71.148 | 357 | 99 | 3 | 39 | 392 | 21 | 376 | 0.0 | 523 |
| MS.gene55679.t1 | AT4G33495 | 39.216 | 357 | 207 | 5 | 41 | 391 | 35 | 387 | 2.21e-76 | 243 |
| MS.gene55679.t1 | AT5G45790 | 35.248 | 383 | 232 | 4 | 9 | 391 | 29 | 395 | 1.87e-74 | 239 |
| MS.gene55679.t1 | AT5G45790 | 39.073 | 302 | 172 | 3 | 90 | 391 | 21 | 310 | 4.01e-69 | 223 |
| MS.gene55679.t1 | AT4G24320 | 29.462 | 353 | 232 | 9 | 48 | 392 | 18 | 361 | 1.61e-36 | 138 |
| MS.gene55679.t1 | AT3G58520 | 29.640 | 361 | 222 | 9 | 26 | 375 | 17 | 356 | 8.58e-35 | 134 |
| MS.gene55679.t1 | AT2G31290 | 25.707 | 389 | 243 | 8 | 51 | 418 | 27 | 390 | 5.99e-34 | 131 |
| MS.gene55679.t1 | AT2G31290 | 25.707 | 389 | 243 | 8 | 51 | 418 | 27 | 390 | 5.99e-34 | 131 |
| MS.gene55679.t1 | AT3G58520 | 30.030 | 333 | 199 | 7 | 53 | 375 | 36 | 344 | 6.31e-33 | 128 |
| MS.gene55679.t1 | AT2G39120 | 27.793 | 367 | 249 | 6 | 23 | 386 | 2 | 355 | 1.10e-32 | 127 |
| MS.gene55679.t1 | AT5G21970 | 26.866 | 402 | 244 | 12 | 37 | 408 | 38 | 419 | 1.00e-31 | 125 |
| MS.gene55679.t1 | AT5G21970 | 26.866 | 402 | 244 | 12 | 37 | 408 | 38 | 419 | 1.00e-31 | 125 |
| MS.gene55679.t1 | AT3G63090 | 29.524 | 315 | 198 | 6 | 81 | 386 | 66 | 365 | 1.59e-31 | 124 |
| MS.gene55679.t1 | AT5G48040 | 28.000 | 350 | 208 | 9 | 53 | 386 | 40 | 361 | 1.05e-30 | 122 |
| MS.gene55679.t1 | AT1G71850 | 25.337 | 371 | 257 | 8 | 43 | 406 | 22 | 379 | 1.54e-30 | 123 |
| MS.gene55679.t1 | AT4G01037 | 27.151 | 372 | 237 | 10 | 52 | 410 | 78 | 428 | 7.85e-30 | 121 |
| MS.gene55679.t1 | AT1G79120 | 28.231 | 294 | 186 | 5 | 107 | 387 | 115 | 396 | 3.12e-28 | 115 |
| MS.gene55679.t1 | AT1G79120 | 28.231 | 294 | 186 | 5 | 107 | 387 | 115 | 396 | 3.12e-28 | 115 |
| MS.gene55679.t1 | AT5G62990 | 24.857 | 350 | 230 | 10 | 53 | 386 | 60 | 392 | 2.50e-21 | 96.7 |
| MS.gene55679.t1 | AT4G08940 | 25.588 | 340 | 226 | 14 | 41 | 374 | 56 | 374 | 1.73e-13 | 72.0 |
Find 97 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCAGAGTTTGCCTTATA+TGG | 0.183804 | 3.3:+57144176 | MS.gene55679:CDS |
| AACAGAGACTGATCGGTTTC+TGG | 0.240773 | 3.3:-57143608 | None:intergenic |
| AGATAAGCCAATTTAGAAAA+TGG | 0.242614 | 3.3:+57144328 | MS.gene55679:CDS |
| CTTGCATCATAGACAGGATT+TGG | 0.284743 | 3.3:-57144477 | None:intergenic |
| TAATATAAGGGATCTATTCT+TGG | 0.287223 | 3.3:+57144365 | MS.gene55679:CDS |
| TTCTTGCTCAACCGCATTCC+TGG | 0.288574 | 3.3:-57144132 | None:intergenic |
| CCCCACTTTCGAGAAACTTA+TGG | 0.293848 | 3.3:+57143528 | MS.gene55679:CDS |
| ATCTGTCGACAAAGGGTAAA+AGG | 0.299149 | 3.3:+57144406 | MS.gene55679:CDS |
| ATCTCATACGGCCCCATATA+AGG | 0.303643 | 3.3:-57144189 | None:intergenic |
| AGCTGTTAATTCCAAGTTGC+AGG | 0.346075 | 3.3:+57144545 | MS.gene55679:CDS |
| CATTAATAGCCTCAGCTTCA+AGG | 0.360957 | 3.3:-57143783 | None:intergenic |
| CTTTGCCTCTTGTTGTTGAA+AGG | 0.364008 | 3.3:+57143809 | MS.gene55679:CDS |
| GAGCTCGTGAATTTACATAT+TGG | 0.375257 | 3.3:-57143501 | None:intergenic |
| AGGCAGTGGCACCGCGGTTA+AGG | 0.379733 | 3.3:-57143663 | None:intergenic |
| AAAGAGGTCGCTCACTCAAA+TGG | 0.385463 | 3.3:+57143387 | MS.gene55679:CDS |
| GTGGAGCTTCTGAGAGAGAT+TGG | 0.399486 | 3.3:-57143641 | None:intergenic |
| ACAGAGACTGATCGGTTTCT+GGG | 0.402437 | 3.3:-57143607 | None:intergenic |
| AGCCAATTTAGAAAATGGTT+TGG | 0.404374 | 3.3:+57144333 | MS.gene55679:CDS |
| TTCAAGGTTTGGAGGGAGCT+TGG | 0.404473 | 3.3:+57143886 | MS.gene55679:CDS |
| ATCCATAAGTTTCTCGAAAG+TGG | 0.410175 | 3.3:-57143530 | None:intergenic |
| TGAGAAGAAGAAGACATCTA+AGG | 0.415354 | 3.3:+57144218 | MS.gene55679:CDS |
| TGGCAGAGTTTGCCTTATAT+GGG | 0.419505 | 3.3:+57144177 | MS.gene55679:CDS |
| GAGCTGCTGTTGAGGATTGG+AGG | 0.431533 | 3.3:+57144034 | MS.gene55679:CDS |
| TTAGAGCTGCTGTTGAGGAT+TGG | 0.433013 | 3.3:+57144031 | MS.gene55679:CDS |
| TTCTGGGGTTAGCAAGGATA+AGG | 0.433285 | 3.3:-57143591 | None:intergenic |
| TTGTTGTTGAAAGGCTTGTT+CGG | 0.434863 | 3.3:+57143818 | MS.gene55679:CDS |
| GCAGCTCTAAAACCATTGTT+AGG | 0.443938 | 3.3:-57144018 | None:intergenic |
| CCTGCAAAACGGCTGCAACT+TGG | 0.450688 | 3.3:-57143731 | None:intergenic |
| TCCATAAGTTTCTCGAAAGT+GGG | 0.452415 | 3.3:-57143529 | None:intergenic |
| AGCTCTAAGAGGAACCGTTC+TGG | 0.460122 | 3.3:-57143860 | None:intergenic |
| CTTCTCCTTGCATCATAGAC+AGG | 0.474197 | 3.3:-57144483 | None:intergenic |
| CATTTCCATGTTATTAACAC+TGG | 0.476158 | 3.3:-57144082 | None:intergenic |
| GACATCTAAGGCTGGAATGA+TGG | 0.476618 | 3.3:+57144230 | MS.gene55679:CDS |
| ACTGAGTCCTCAAAATCATC+AGG | 0.479936 | 3.3:-57143913 | None:intergenic |
| GAGTTTAACAGTGGAAAAGA+TGG | 0.482154 | 3.3:+57144293 | MS.gene55679:CDS |
| AAGAGGTCGCTCACTCAAAT+GGG | 0.488339 | 3.3:+57143388 | MS.gene55679:CDS |
| GGATCTATTCTTGGATCACC+CGG | 0.492833 | 3.3:+57144374 | MS.gene55679:CDS |
| AGCTGCTGTTGAGGATTGGA+GGG | 0.511698 | 3.3:+57144035 | MS.gene55679:CDS |
| ACCTTGAAAACAGCTCTAAG+AGG | 0.512545 | 3.3:-57143871 | None:intergenic |
| TTTAAACAACGGTATCCTCC+AGG | 0.515381 | 3.3:+57144114 | MS.gene55679:CDS |
| GTCGACAGATAGAAGATCCC+CGG | 0.523665 | 3.3:-57144393 | None:intergenic |
| ATCTTCTATCTGTCGACAAA+GGG | 0.524672 | 3.3:+57144399 | MS.gene55679:CDS |
| GGTTGTCGAGTGTTGTAAAG+AGG | 0.527201 | 3.3:+57144056 | MS.gene55679:CDS |
| AAGAAGAAGACATCTAAGGC+TGG | 0.541329 | 3.3:+57144222 | MS.gene55679:CDS |
| CAGTGGCACCGCGGTTAAGG+TGG | 0.542087 | 3.3:-57143660 | None:intergenic |
| ATCGGTTTCTGGGGTTAGCA+AGG | 0.543715 | 3.3:-57143597 | None:intergenic |
| CTGTCTATGATGCAAGGAGA+AGG | 0.546551 | 3.3:+57144484 | MS.gene55679:CDS |
| GTGAGGAAACTTGCGGAGGA+AGG | 0.548834 | 3.3:-57143683 | None:intergenic |
| GAATACTCATCTGTTGAAGC+TGG | 0.549824 | 3.3:+57143984 | MS.gene55679:CDS |
| GTTGGTGATGTTCCTAACAA+TGG | 0.550594 | 3.3:+57144006 | MS.gene55679:CDS |
| TGCAACTTGGAATTAACAGC+TGG | 0.550838 | 3.3:-57144543 | None:intergenic |
| GTCTATGTCTGCTTCCAGAA+CGG | 0.551888 | 3.3:+57143846 | MS.gene55679:CDS |
| TCAGAGCCAATGTGAAGGAA+TGG | 0.559863 | 3.3:+57144157 | MS.gene55679:CDS |
| TGTTTCGCGCCTTGAAGCTG+AGG | 0.561881 | 3.3:+57143774 | MS.gene55679:CDS |
| AAACTTGCGGAGGAAGGCAG+TGG | 0.562183 | 3.3:-57143677 | None:intergenic |
| GGAATTCAACAGAGACTGAT+CGG | 0.563326 | 3.3:-57143615 | None:intergenic |
| TTCTCACTGACCATCTCATA+CGG | 0.567104 | 3.3:-57144201 | None:intergenic |
| ACTCATAAATTCATGAACAA+TGG | 0.568519 | 3.3:-57144274 | None:intergenic |
| TGAATTTATGAGTTTAACAG+TGG | 0.570981 | 3.3:+57144284 | MS.gene55679:CDS |
| GCATCAGTTAACCTGCAAAA+CGG | 0.571025 | 3.3:-57143742 | None:intergenic |
| CAAAACGGCTGCAACTTGGA+AGG | 0.574780 | 3.3:-57143727 | None:intergenic |
| TGTGGCAATGAGGTTGAACA+AGG | 0.574826 | 3.3:+57144576 | MS.gene55679:CDS |
| GAACGGCAATGACTTTGAGA+AGG | 0.579886 | 3.3:-57143564 | None:intergenic |
| GATCTTCTATCTGTCGACAA+AGG | 0.581795 | 3.3:+57144398 | MS.gene55679:CDS |
| ACAAGCCTTTCAACAACAAG+AGG | 0.582092 | 3.3:-57143814 | None:intergenic |
| TTTAACAGTGGAAAAGATGG+TGG | 0.585164 | 3.3:+57144296 | MS.gene55679:CDS |
| CAAATCCTGTCTATGATGCA+AGG | 0.586740 | 3.3:+57144478 | MS.gene55679:CDS |
| TTATATGGGGCCGTATGAGA+TGG | 0.596699 | 3.3:+57144191 | MS.gene55679:CDS |
| ACTCATCTGTTGAAGCTGGT+TGG | 0.601190 | 3.3:+57143988 | MS.gene55679:CDS |
| AAGTTGCAGGACAAAAGTTG+TGG | 0.601248 | 3.3:+57144558 | MS.gene55679:CDS |
| AGCAAGGATAAGGTCTTGAA+CGG | 0.602317 | 3.3:-57143581 | None:intergenic |
| TAAGGCTGGAATGATGGCGA+TGG | 0.602790 | 3.3:+57144236 | MS.gene55679:CDS |
| TCGACAGATAGAAGATCCCC+GGG | 0.609533 | 3.3:-57144392 | None:intergenic |
| GGCAGAGTTTGCCTTATATG+GGG | 0.613431 | 3.3:+57144178 | MS.gene55679:CDS |
| CAGAGACTGATCGGTTTCTG+GGG | 0.613837 | 3.3:-57143606 | None:intergenic |
| GGATTCCAGTGTTAATAACA+TGG | 0.614807 | 3.3:+57144077 | MS.gene55679:CDS |
| TGGCAATGAGGTTGAACAAG+GGG | 0.619354 | 3.3:+57144578 | MS.gene55679:CDS |
| ACTCTGCCATTCCTTCACAT+TGG | 0.624053 | 3.3:-57144163 | None:intergenic |
| GAACTTCAGAGCCAATGTGA+AGG | 0.627730 | 3.3:+57144152 | MS.gene55679:CDS |
| CCATAAGTTTCTCGAAAGTG+GGG | 0.627913 | 3.3:-57143528 | None:intergenic |
| GATCTATTCTTGGATCACCC+GGG | 0.631074 | 3.3:+57144375 | MS.gene55679:CDS |
| ATCTATTCTTGGATCACCCG+GGG | 0.642117 | 3.3:+57144376 | MS.gene55679:CDS |
| AACGGTATCCTCCAGGAATG+CGG | 0.645784 | 3.3:+57144121 | MS.gene55679:CDS |
| TTGAGGGAAGCTTATGAACG+AGG | 0.648422 | 3.3:+57144441 | MS.gene55679:CDS |
| CAAAGATGTGAGGAAACTTG+CGG | 0.653222 | 3.3:-57143690 | None:intergenic |
| CTTGTTGCTTTAGAACGCCG+TGG | 0.656804 | 3.3:+57144516 | MS.gene55679:CDS |
| GTGGCAATGAGGTTGAACAA+GGG | 0.673362 | 3.3:+57144577 | MS.gene55679:CDS |
| TTGCTCAACCGCATTCCTGG+AGG | 0.673617 | 3.3:-57144129 | None:intergenic |
| TAGTAAATATCAAAGATGTG+AGG | 0.685693 | 3.3:-57143700 | None:intergenic |
| GGACAAAAGTTGTGGCAATG+AGG | 0.687120 | 3.3:+57144566 | MS.gene55679:CDS |
| GCTTCTGAGAGAGATTGGAG+AGG | 0.688059 | 3.3:-57143636 | None:intergenic |
| GTGTTAATAACATGGAAATG+CGG | 0.693054 | 3.3:+57144085 | MS.gene55679:CDS |
| AATTAACAGCTGGTAAACCA+CGG | 0.700188 | 3.3:-57144533 | None:intergenic |
| GATGGCGATGGAGAAGCGAG+CGG | 0.722066 | 3.3:+57144248 | MS.gene55679:CDS |
| CAGAAGCTCCACCTTAACCG+CGG | 0.723603 | 3.3:+57143652 | MS.gene55679:CDS |
| AGATGTGAGGAAACTTGCGG+AGG | 0.742899 | 3.3:-57143687 | None:intergenic |
| GGAGGAAGGCAGTGGCACCG+CGG | 0.765914 | 3.3:-57143669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGTATTGATTTTAATATAA+GGG | + | chr3.3:57144353-57144372 | MS.gene55679:CDS | 15.0% |
| !!! | TTGGTATTGATTTTAATATA+AGG | + | chr3.3:57144352-57144371 | MS.gene55679:CDS | 15.0% |
| ! | ACTCATAAATTCATGAACAA+TGG | - | chr3.3:57144277-57144296 | None:intergenic | 25.0% |
| ! | AGATAAGCCAATTTAGAAAA+TGG | + | chr3.3:57144328-57144347 | MS.gene55679:CDS | 25.0% |
| ! | TAATATAAGGGATCTATTCT+TGG | + | chr3.3:57144365-57144384 | MS.gene55679:CDS | 25.0% |
| ! | TAGTAAATATCAAAGATGTG+AGG | - | chr3.3:57143703-57143722 | None:intergenic | 25.0% |
| ! | TGAATTTATGAGTTTAACAG+TGG | + | chr3.3:57144284-57144303 | MS.gene55679:CDS | 25.0% |
| !! | TACCAAACCATTTTCTAAAT+TGG | - | chr3.3:57144338-57144357 | None:intergenic | 25.0% |
| AGCCAATTTAGAAAATGGTT+TGG | + | chr3.3:57144333-57144352 | MS.gene55679:CDS | 30.0% | |
| CATTTCCATGTTATTAACAC+TGG | - | chr3.3:57144085-57144104 | None:intergenic | 30.0% | |
| GTGTTAATAACATGGAAATG+CGG | + | chr3.3:57144085-57144104 | MS.gene55679:CDS | 30.0% | |
| !! | ACCTCTTTTTCATGAAAACT+CGG | - | chr3.3:57143375-57143394 | None:intergenic | 30.0% |
| !! | TTGATTTTGATGTCTGTGTT+GGG | - | chr3.3:57143437-57143456 | None:intergenic | 30.0% |
| !!! | TGCGGTATAGTTTTAAACAA+CGG | + | chr3.3:57144103-57144122 | MS.gene55679:CDS | 30.0% |
| AATTAACAGCTGGTAAACCA+CGG | - | chr3.3:57144536-57144555 | None:intergenic | 35.0% | |
| ATCCATAAGTTTCTCGAAAG+TGG | - | chr3.3:57143533-57143552 | None:intergenic | 35.0% | |
| ATCTTCTATCTGTCGACAAA+GGG | + | chr3.3:57144399-57144418 | MS.gene55679:CDS | 35.0% | |
| GAGCTCGTGAATTTACATAT+TGG | - | chr3.3:57143504-57143523 | None:intergenic | 35.0% | |
| GAGTTTAACAGTGGAAAAGA+TGG | + | chr3.3:57144293-57144312 | MS.gene55679:CDS | 35.0% | |
| GGATTCCAGTGTTAATAACA+TGG | + | chr3.3:57144077-57144096 | MS.gene55679:CDS | 35.0% | |
| TCCATAAGTTTCTCGAAAGT+GGG | - | chr3.3:57143532-57143551 | None:intergenic | 35.0% | |
| TGAGAAGAAGAAGACATCTA+AGG | + | chr3.3:57144218-57144237 | MS.gene55679:CDS | 35.0% | |
| TTTAACAGTGGAAAAGATGG+TGG | + | chr3.3:57144296-57144315 | MS.gene55679:CDS | 35.0% | |
| ! | ACCGAGTTTTCATGAAAAAG+AGG | + | chr3.3:57143371-57143390 | MS.gene55679:CDS | 35.0% |
| ! | TTGTTGTTGAAAGGCTTGTT+CGG | + | chr3.3:57143818-57143837 | MS.gene55679:CDS | 35.0% |
| !! | GTTGATTTTGATGTCTGTGT+TGG | - | chr3.3:57143438-57143457 | None:intergenic | 35.0% |
| !! | TGTTTTTCAGCTTTGTGATG+CGG | + | chr3.3:57143954-57143973 | MS.gene55679:CDS | 35.0% |
| !! | TTAGAGCTGTTTTCAAGGTT+TGG | + | chr3.3:57143875-57143894 | MS.gene55679:CDS | 35.0% |
| AAGTTGCAGGACAAAAGTTG+TGG | + | chr3.3:57144558-57144577 | MS.gene55679:CDS | 40.0% | |
| ACAAGCCTTTCAACAACAAG+AGG | - | chr3.3:57143817-57143836 | None:intergenic | 40.0% | |
| ACTGAGTCCTCAAAATCATC+AGG | - | chr3.3:57143916-57143935 | None:intergenic | 40.0% | |
| AGCAAGGATAAGGTCTTGAA+CGG | - | chr3.3:57143584-57143603 | None:intergenic | 40.0% | |
| AGCTGTTAATTCCAAGTTGC+AGG | + | chr3.3:57144545-57144564 | MS.gene55679:CDS | 40.0% | |
| ATCTGTCGACAAAGGGTAAA+AGG | + | chr3.3:57144406-57144425 | MS.gene55679:CDS | 40.0% | |
| ATGGCAGAGTTTGCCTTATA+TGG | + | chr3.3:57144176-57144195 | MS.gene55679:CDS | 40.0% | |
| CAAAGATGTGAGGAAACTTG+CGG | - | chr3.3:57143693-57143712 | None:intergenic | 40.0% | |
| CAAATCCTGTCTATGATGCA+AGG | + | chr3.3:57144478-57144497 | MS.gene55679:CDS | 40.0% | |
| CATTAATAGCCTCAGCTTCA+AGG | - | chr3.3:57143786-57143805 | None:intergenic | 40.0% | |
| CCATAAGTTTCTCGAAAGTG+GGG | - | chr3.3:57143531-57143550 | None:intergenic | 40.0% | |
| CTTGCATCATAGACAGGATT+TGG | - | chr3.3:57144480-57144499 | None:intergenic | 40.0% | |
| GAATACTCATCTGTTGAAGC+TGG | + | chr3.3:57143984-57144003 | MS.gene55679:CDS | 40.0% | |
| GATCTTCTATCTGTCGACAA+AGG | + | chr3.3:57144398-57144417 | MS.gene55679:CDS | 40.0% | |
| GCATCAGTTAACCTGCAAAA+CGG | - | chr3.3:57143745-57143764 | None:intergenic | 40.0% | |
| GGAATTCAACAGAGACTGAT+CGG | - | chr3.3:57143618-57143637 | None:intergenic | 40.0% | |
| TGCAACTTGGAATTAACAGC+TGG | - | chr3.3:57144546-57144565 | None:intergenic | 40.0% | |
| TGGCAGAGTTTGCCTTATAT+GGG | + | chr3.3:57144177-57144196 | MS.gene55679:CDS | 40.0% | |
| TTCTCACTGACCATCTCATA+CGG | - | chr3.3:57144204-57144223 | None:intergenic | 40.0% | |
| TTTAAACAACGGTATCCTCC+AGG | + | chr3.3:57144114-57144133 | MS.gene55679:CDS | 40.0% | |
| ! | AAGAAGAAGACATCTAAGGC+TGG | + | chr3.3:57144222-57144241 | MS.gene55679:CDS | 40.0% |
| ! | AAGGCACACTGTTTTCTTGA+GGG | + | chr3.3:57144425-57144444 | MS.gene55679:CDS | 40.0% |
| ! | ACAACTTTTGTCCTGCAACT+TGG | - | chr3.3:57144559-57144578 | None:intergenic | 40.0% |
| ! | TGGTCTTCCTGATGATTTTG+AGG | + | chr3.3:57143906-57143925 | MS.gene55679:CDS | 40.0% |
| !! | AAAGGCACACTGTTTTCTTG+AGG | + | chr3.3:57144424-57144443 | MS.gene55679:CDS | 40.0% |
| !! | ACCTTGAAAACAGCTCTAAG+AGG | - | chr3.3:57143874-57143893 | None:intergenic | 40.0% |
| !! | AGCTGTTTTCAAGGTTTGGA+GGG | + | chr3.3:57143879-57143898 | MS.gene55679:CDS | 40.0% |
| !! | CTTTGCCTCTTGTTGTTGAA+AGG | + | chr3.3:57143809-57143828 | MS.gene55679:CDS | 40.0% |
| !! | GCAGCTCTAAAACCATTGTT+AGG | - | chr3.3:57144021-57144040 | None:intergenic | 40.0% |
| !! | GTTGGTGATGTTCCTAACAA+TGG | + | chr3.3:57144006-57144025 | MS.gene55679:CDS | 40.0% |
| !! | TCCTCTTAGAGCTGTTTTCA+AGG | + | chr3.3:57143870-57143889 | MS.gene55679:CDS | 40.0% |
| AAAGAGGTCGCTCACTCAAA+TGG | + | chr3.3:57143387-57143406 | MS.gene55679:CDS | 45.0% | |
| AAGAGGTCGCTCACTCAAAT+GGG | + | chr3.3:57143388-57143407 | MS.gene55679:CDS | 45.0% | |
| ACTCATCTGTTGAAGCTGGT+TGG | + | chr3.3:57143988-57144007 | MS.gene55679:CDS | 45.0% | |
| ACTCTGCCATTCCTTCACAT+TGG | - | chr3.3:57144166-57144185 | None:intergenic | 45.0% | |
| ATCTATTCTTGGATCACCCG+GGG | + | chr3.3:57144376-57144395 | MS.gene55679:CDS | 45.0% | |
| ATCTCATACGGCCCCATATA+AGG | - | chr3.3:57144192-57144211 | None:intergenic | 45.0% | |
| CCCCACTTTCGAGAAACTTA+TGG | + | chr3.3:57143528-57143547 | MS.gene55679:CDS | 45.0% | |
| CTGTCTATGATGCAAGGAGA+AGG | + | chr3.3:57144484-57144503 | MS.gene55679:CDS | 45.0% | |
| CTTCTCCTTGCATCATAGAC+AGG | - | chr3.3:57144486-57144505 | None:intergenic | 45.0% | |
| GAACTTCAGAGCCAATGTGA+AGG | + | chr3.3:57144152-57144171 | MS.gene55679:CDS | 45.0% | |
| GATCTATTCTTGGATCACCC+GGG | + | chr3.3:57144375-57144394 | MS.gene55679:CDS | 45.0% | |
| GGACAAAAGTTGTGGCAATG+AGG | + | chr3.3:57144566-57144585 | MS.gene55679:CDS | 45.0% | |
| GGATCTATTCTTGGATCACC+CGG | + | chr3.3:57144374-57144393 | MS.gene55679:CDS | 45.0% | |
| GGCAGAGTTTGCCTTATATG+GGG | + | chr3.3:57144178-57144197 | MS.gene55679:CDS | 45.0% | |
| GTCTATGTCTGCTTCCAGAA+CGG | + | chr3.3:57143846-57143865 | MS.gene55679:CDS | 45.0% | |
| GTGGCAATGAGGTTGAACAA+GGG | + | chr3.3:57144577-57144596 | MS.gene55679:CDS | 45.0% | |
| TCAGAGCCAATGTGAAGGAA+TGG | + | chr3.3:57144157-57144176 | MS.gene55679:CDS | 45.0% | |
| TGGCAATGAGGTTGAACAAG+GGG | + | chr3.3:57144578-57144597 | MS.gene55679:CDS | 45.0% | |
| TGTGGCAATGAGGTTGAACA+AGG | + | chr3.3:57144576-57144595 | MS.gene55679:CDS | 45.0% | |
| TTAGAGCTGCTGTTGAGGAT+TGG | + | chr3.3:57144031-57144050 | MS.gene55679:CDS | 45.0% | |
| TTATATGGGGCCGTATGAGA+TGG | + | chr3.3:57144191-57144210 | MS.gene55679:CDS | 45.0% | |
| TTGAGGGAAGCTTATGAACG+AGG | + | chr3.3:57144441-57144460 | MS.gene55679:CDS | 45.0% | |
| ! | AACAGAGACTGATCGGTTTC+TGG | - | chr3.3:57143611-57143630 | None:intergenic | 45.0% |
| ! | ACAGAGACTGATCGGTTTCT+GGG | - | chr3.3:57143610-57143629 | None:intergenic | 45.0% |
| ! | GAACGGCAATGACTTTGAGA+AGG | - | chr3.3:57143567-57143586 | None:intergenic | 45.0% |
| ! | GACATCTAAGGCTGGAATGA+TGG | + | chr3.3:57144230-57144249 | MS.gene55679:CDS | 45.0% |
| ! | GGTTGTCGAGTGTTGTAAAG+AGG | + | chr3.3:57144056-57144075 | MS.gene55679:CDS | 45.0% |
| !! | GAGCTGTTTTCAAGGTTTGG+AGG | + | chr3.3:57143878-57143897 | MS.gene55679:CDS | 45.0% |
| !! | TTCTGGGGTTAGCAAGGATA+AGG | - | chr3.3:57143594-57143613 | None:intergenic | 45.0% |
| !!! | TGGTTTTAGAGCTGCTGTTG+AGG | + | chr3.3:57144026-57144045 | MS.gene55679:CDS | 45.0% |
| AACGGTATCCTCCAGGAATG+CGG | + | chr3.3:57144121-57144140 | MS.gene55679:CDS | 50.0% | |
| AGATGTGAGGAAACTTGCGG+AGG | - | chr3.3:57143690-57143709 | None:intergenic | 50.0% | |
| AGCTGCTGTTGAGGATTGGA+GGG | + | chr3.3:57144035-57144054 | MS.gene55679:CDS | 50.0% | |
| CAAAACGGCTGCAACTTGGA+AGG | - | chr3.3:57143730-57143749 | None:intergenic | 50.0% | |
| GTCGACAGATAGAAGATCCC+CGG | - | chr3.3:57144396-57144415 | None:intergenic | 50.0% | |
| TCGACAGATAGAAGATCCCC+GGG | - | chr3.3:57144395-57144414 | None:intergenic | 50.0% | |
| TTCAAGGTTTGGAGGGAGCT+TGG | + | chr3.3:57143886-57143905 | MS.gene55679:CDS | 50.0% | |
| TTCTTGCTCAACCGCATTCC+TGG | - | chr3.3:57144135-57144154 | None:intergenic | 50.0% | |
| ! | CAGAGACTGATCGGTTTCTG+GGG | - | chr3.3:57143609-57143628 | None:intergenic | 50.0% |
| ! | GCTTCTGAGAGAGATTGGAG+AGG | - | chr3.3:57143639-57143658 | None:intergenic | 50.0% |
| ! | GTGGAGCTTCTGAGAGAGAT+TGG | - | chr3.3:57143644-57143663 | None:intergenic | 50.0% |
| ! | TAAGGCTGGAATGATGGCGA+TGG | + | chr3.3:57144236-57144255 | MS.gene55679:CDS | 50.0% |
| !! | AGCTCTAAGAGGAACCGTTC+TGG | - | chr3.3:57143863-57143882 | None:intergenic | 50.0% |
| !! | ATCGGTTTCTGGGGTTAGCA+AGG | - | chr3.3:57143600-57143619 | None:intergenic | 50.0% |
| !! | CTTGTTGCTTTAGAACGCCG+TGG | + | chr3.3:57144516-57144535 | MS.gene55679:CDS | 50.0% |
| AAACTTGCGGAGGAAGGCAG+TGG | - | chr3.3:57143680-57143699 | None:intergenic | 55.0% | |
| CAGAAGCTCCACCTTAACCG+CGG | + | chr3.3:57143652-57143671 | MS.gene55679:CDS | 55.0% | |
| CCTGCAAAACGGCTGCAACT+TGG | - | chr3.3:57143734-57143753 | None:intergenic | 55.0% | |
| GAGCTGCTGTTGAGGATTGG+AGG | + | chr3.3:57144034-57144053 | MS.gene55679:CDS | 55.0% | |
| GTGAGGAAACTTGCGGAGGA+AGG | - | chr3.3:57143686-57143705 | None:intergenic | 55.0% | |
| TGTTTCGCGCCTTGAAGCTG+AGG | + | chr3.3:57143774-57143793 | MS.gene55679:CDS | 55.0% | |
| TTGCTCAACCGCATTCCTGG+AGG | - | chr3.3:57144132-57144151 | None:intergenic | 55.0% | |
| !! | CCAAGTTGCAGCCGTTTTGC+AGG | + | chr3.3:57143731-57143750 | MS.gene55679:CDS | 55.0% |
| GATGGCGATGGAGAAGCGAG+CGG | + | chr3.3:57144248-57144267 | MS.gene55679:CDS | 60.0% | |
| AGGCAGTGGCACCGCGGTTA+AGG | - | chr3.3:57143666-57143685 | None:intergenic | 65.0% | |
| CAGTGGCACCGCGGTTAAGG+TGG | - | chr3.3:57143663-57143682 | None:intergenic | 65.0% | |
| GGAGGAAGGCAGTGGCACCG+CGG | - | chr3.3:57143672-57143691 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 57143364 | 57144641 | 57143364 | ID=MS.gene55679 |
| chr3.3 | mRNA | 57143364 | 57144641 | 57143364 | ID=MS.gene55679.t1;Parent=MS.gene55679 |
| chr3.3 | exon | 57143364 | 57144641 | 57143364 | ID=MS.gene55679.t1.exon1;Parent=MS.gene55679.t1 |
| chr3.3 | CDS | 57143364 | 57144641 | 57143364 | ID=cds.MS.gene55679.t1;Parent=MS.gene55679.t1 |
| Gene Sequence |
| Protein sequence |
