Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013955.t1 | XP_003624893.1 | 97.7 | 912 | 11 | 1 | 1 | 902 | 1 | 912 | 0.00E+00 | 1791.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013955.t1 | O22207 | 67.2 | 925 | 258 | 8 | 1 | 890 | 1 | 915 | 0.0e+00 | 1204.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013955.t1 | G7L4U7 | 97.7 | 912 | 11 | 1 | 1 | 902 | 1 | 912 | 0.0e+00 | 1791.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene86827 | MS.gene013955 | PPI |
MS.gene013955 | MS.gene062155 | PPI |
MS.gene013955 | MS.gene004975 | PPI |
MS.gene07512 | MS.gene013955 | PPI |
MS.gene07513 | MS.gene013955 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013955.t1 | MTR_7g088760 | 97.697 | 912 | 11 | 1 | 1 | 902 | 1 | 912 | 0.0 | 1849 |
MS.gene013955.t1 | MTR_7g088760 | 95.910 | 929 | 11 | 2 | 1 | 902 | 1 | 929 | 0.0 | 1840 |
MS.gene013955.t1 | MTR_1g077980 | 49.724 | 907 | 419 | 12 | 14 | 894 | 19 | 914 | 0.0 | 875 |
MS.gene013955.t1 | MTR_2g087710 | 44.558 | 882 | 412 | 22 | 41 | 891 | 27 | 862 | 0.0 | 679 |
MS.gene013955.t1 | MTR_7g106570 | 42.652 | 837 | 425 | 14 | 99 | 902 | 85 | 899 | 0.0 | 627 |
MS.gene013955.t1 | MTR_1g014260 | 31.288 | 163 | 91 | 5 | 744 | 888 | 363 | 522 | 5.61e-19 | 92.4 |
MS.gene013955.t1 | MTR_1g014260 | 26.519 | 181 | 113 | 2 | 315 | 495 | 179 | 339 | 2.39e-12 | 71.2 |
MS.gene013955.t1 | MTR_4g115880 | 28.144 | 167 | 95 | 4 | 744 | 888 | 415 | 578 | 1.23e-18 | 91.3 |
MS.gene013955.t1 | MTR_8g090190 | 33.129 | 163 | 87 | 6 | 744 | 891 | 208 | 363 | 4.67e-17 | 84.3 |
MS.gene013955.t1 | MTR_3g087140 | 33.129 | 163 | 87 | 5 | 744 | 891 | 208 | 363 | 5.20e-16 | 81.3 |
MS.gene013955.t1 | MTR_3g083600 | 33.498 | 203 | 102 | 9 | 298 | 495 | 210 | 384 | 5.95e-16 | 83.2 |
MS.gene013955.t1 | MTR_3g083600 | 35.606 | 132 | 70 | 4 | 773 | 890 | 939 | 1069 | 2.83e-14 | 77.8 |
MS.gene013955.t1 | MTR_1g014680 | 29.717 | 212 | 140 | 6 | 683 | 891 | 282 | 487 | 1.34e-15 | 82.0 |
MS.gene013955.t1 | MTR_3g100480 | 32.450 | 151 | 94 | 5 | 744 | 891 | 744 | 889 | 2.48e-15 | 81.3 |
MS.gene013955.t1 | MTR_4g130940 | 34.437 | 151 | 93 | 6 | 744 | 892 | 251 | 397 | 8.03e-15 | 79.3 |
MS.gene013955.t1 | MTR_4g130940 | 29.048 | 210 | 112 | 8 | 294 | 495 | 66 | 246 | 6.99e-12 | 70.1 |
MS.gene013955.t1 | MTR_4g130940 | 34.437 | 151 | 93 | 6 | 744 | 892 | 251 | 397 | 1.18e-14 | 79.0 |
MS.gene013955.t1 | MTR_4g130940 | 29.048 | 210 | 112 | 8 | 294 | 495 | 66 | 246 | 8.23e-12 | 69.7 |
MS.gene013955.t1 | MTR_6g022310 | 31.126 | 151 | 97 | 5 | 744 | 893 | 284 | 428 | 1.50e-14 | 78.2 |
MS.gene013955.t1 | MTR_5g066000 | 34.194 | 155 | 91 | 6 | 741 | 891 | 699 | 846 | 2.93e-14 | 77.8 |
MS.gene013955.t1 | MTR_5g030360 | 32.680 | 153 | 96 | 6 | 744 | 893 | 304 | 452 | 2.98e-14 | 77.4 |
MS.gene013955.t1 | MTR_5g430360 | 32.680 | 153 | 96 | 6 | 744 | 893 | 136 | 284 | 4.12e-14 | 76.6 |
MS.gene013955.t1 | MTR_3g100480 | 27.374 | 179 | 96 | 5 | 744 | 891 | 744 | 919 | 2.83e-13 | 74.7 |
MS.gene013955.t1 | MTR_8g471100 | 31.757 | 148 | 94 | 5 | 749 | 893 | 366 | 509 | 3.04e-13 | 73.9 |
MS.gene013955.t1 | MTR_8g067060 | 31.757 | 148 | 94 | 5 | 749 | 893 | 357 | 500 | 3.45e-13 | 73.6 |
MS.gene013955.t1 | MTR_2g070390 | 30.303 | 165 | 105 | 5 | 744 | 902 | 185 | 345 | 3.89e-13 | 73.9 |
MS.gene013955.t1 | MTR_6g022300 | 30.464 | 151 | 98 | 5 | 744 | 893 | 224 | 368 | 5.47e-12 | 70.1 |
MS.gene013955.t1 | MTR_5g032380 | 32.000 | 150 | 94 | 5 | 744 | 890 | 582 | 726 | 1.05e-11 | 69.3 |
MS.gene013955.t1 | MTR_2g060050 | 34.746 | 118 | 74 | 3 | 775 | 891 | 417 | 532 | 1.20e-11 | 68.6 |
MS.gene013955.t1 | MTR_6g022290 | 29.801 | 151 | 99 | 5 | 744 | 893 | 186 | 330 | 1.54e-11 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013955.t1 | AT2G40930 | 67.135 | 925 | 259 | 9 | 1 | 890 | 1 | 915 | 0.0 | 1245 |
MS.gene013955.t1 | AT2G40930 | 67.135 | 925 | 259 | 9 | 1 | 890 | 1 | 915 | 0.0 | 1245 |
MS.gene013955.t1 | AT4G10590 | 47.519 | 907 | 420 | 14 | 15 | 894 | 20 | 897 | 0.0 | 819 |
MS.gene013955.t1 | AT4G10590 | 47.519 | 907 | 420 | 14 | 15 | 894 | 20 | 897 | 0.0 | 819 |
MS.gene013955.t1 | AT4G10590 | 47.519 | 907 | 420 | 14 | 15 | 894 | 20 | 897 | 0.0 | 819 |
MS.gene013955.t1 | AT4G10590 | 47.519 | 907 | 420 | 14 | 15 | 894 | 20 | 897 | 0.0 | 819 |
MS.gene013955.t1 | AT4G10570 | 47.180 | 922 | 427 | 15 | 1 | 894 | 9 | 898 | 0.0 | 818 |
MS.gene013955.t1 | AT1G32850 | 46.154 | 910 | 432 | 15 | 9 | 896 | 12 | 885 | 0.0 | 776 |
MS.gene013955.t1 | AT5G22030 | 44.518 | 903 | 419 | 21 | 29 | 891 | 9 | 869 | 0.0 | 697 |
MS.gene013955.t1 | AT5G22030 | 42.797 | 944 | 418 | 25 | 29 | 891 | 9 | 911 | 0.0 | 668 |
MS.gene013955.t1 | AT5G46740 | 35.526 | 152 | 92 | 5 | 744 | 893 | 115 | 262 | 1.23e-18 | 90.9 |
MS.gene013955.t1 | AT5G46740 | 35.526 | 152 | 92 | 5 | 744 | 893 | 324 | 471 | 1.36e-18 | 91.7 |
MS.gene013955.t1 | AT5G10790 | 28.235 | 170 | 94 | 4 | 744 | 888 | 233 | 399 | 7.92e-18 | 87.8 |
MS.gene013955.t1 | AT5G10790 | 28.235 | 170 | 94 | 4 | 744 | 888 | 362 | 528 | 1.70e-17 | 87.4 |
MS.gene013955.t1 | AT4G31670 | 35.294 | 153 | 91 | 5 | 744 | 893 | 329 | 476 | 6.69e-17 | 85.9 |
MS.gene013955.t1 | AT2G32780 | 33.000 | 200 | 103 | 7 | 302 | 497 | 190 | 362 | 1.19e-16 | 85.5 |
MS.gene013955.t1 | AT2G32780 | 34.815 | 135 | 71 | 5 | 772 | 891 | 951 | 1083 | 1.45e-12 | 72.4 |
MS.gene013955.t1 | AT4G17895 | 35.526 | 152 | 92 | 5 | 744 | 893 | 331 | 478 | 1.24e-16 | 85.1 |
MS.gene013955.t1 | AT2G24640 | 32.716 | 162 | 101 | 5 | 734 | 892 | 155 | 311 | 1.55e-16 | 84.3 |
MS.gene013955.t1 | AT4G39910 | 33.129 | 163 | 88 | 6 | 744 | 891 | 211 | 367 | 2.54e-16 | 82.4 |
MS.gene013955.t1 | AT2G24640 | 32.716 | 162 | 101 | 5 | 734 | 892 | 325 | 481 | 2.64e-16 | 84.0 |
MS.gene013955.t1 | AT2G22310 | 32.727 | 165 | 90 | 6 | 744 | 893 | 174 | 332 | 7.59e-16 | 80.5 |
MS.gene013955.t1 | AT2G22310 | 32.727 | 165 | 90 | 6 | 744 | 893 | 169 | 327 | 9.42e-16 | 80.1 |
MS.gene013955.t1 | AT5G65450 | 34.667 | 150 | 91 | 4 | 744 | 890 | 506 | 651 | 1.07e-15 | 82.4 |
MS.gene013955.t1 | AT5G65450 | 34.667 | 150 | 91 | 4 | 744 | 890 | 487 | 632 | 1.25e-15 | 82.0 |
MS.gene013955.t1 | AT2G22310 | 32.727 | 165 | 90 | 6 | 744 | 893 | 206 | 364 | 1.27e-15 | 80.1 |
MS.gene013955.t1 | AT4G24560 | 34.932 | 146 | 86 | 5 | 749 | 891 | 708 | 847 | 2.39e-15 | 81.3 |
MS.gene013955.t1 | AT1G04860 | 31.461 | 178 | 94 | 3 | 318 | 493 | 232 | 383 | 3.67e-15 | 80.9 |
MS.gene013955.t1 | AT1G04860 | 36.154 | 130 | 72 | 5 | 772 | 891 | 829 | 957 | 1.93e-12 | 72.0 |
MS.gene013955.t1 | AT5G57990 | 33.333 | 129 | 80 | 5 | 763 | 890 | 286 | 409 | 3.52e-14 | 77.4 |
MS.gene013955.t1 | AT1G17110 | 34.000 | 150 | 91 | 5 | 744 | 890 | 599 | 743 | 4.75e-13 | 73.9 |
MS.gene013955.t1 | AT1G17110 | 34.000 | 150 | 91 | 5 | 744 | 890 | 599 | 743 | 4.75e-13 | 73.9 |
MS.gene013955.t1 | AT1G17110 | 34.000 | 150 | 91 | 5 | 744 | 890 | 603 | 747 | 4.92e-13 | 73.9 |
MS.gene013955.t1 | AT3G49600 | 31.469 | 143 | 93 | 4 | 744 | 883 | 253 | 393 | 4.29e-12 | 70.9 |
MS.gene013955.t1 | AT3G49600 | 31.469 | 143 | 93 | 4 | 744 | 883 | 253 | 393 | 4.29e-12 | 70.9 |
MS.gene013955.t1 | AT3G49600 | 31.469 | 143 | 93 | 4 | 744 | 883 | 253 | 393 | 4.33e-12 | 70.9 |
MS.gene013955.t1 | AT4G30890 | 34.454 | 119 | 73 | 4 | 775 | 891 | 436 | 551 | 8.32e-12 | 69.3 |
MS.gene013955.t1 | AT4G30890 | 34.454 | 119 | 73 | 4 | 775 | 891 | 436 | 551 | 8.32e-12 | 69.3 |
MS.gene013955.t1 | AT4G30890 | 34.454 | 119 | 73 | 4 | 775 | 891 | 436 | 551 | 8.32e-12 | 69.3 |
MS.gene013955.t1 | AT3G14400 | 30.201 | 149 | 97 | 5 | 744 | 890 | 191 | 334 | 8.59e-12 | 69.7 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAGCAAGCTTTGCTTTAAA+AGG | 0.160460 | 7.2:-19631750 | None:intergenic |
AATCTCACCATTTAAATAAT+TGG | 0.212238 | 7.2:-19628520 | None:intergenic |
TGTCGTCTCTCTTTGCATTT+AGG | 0.212303 | 7.2:-19635359 | None:intergenic |
AGTGACTCGCATACCATTTC+AGG | 0.214221 | 7.2:+19632930 | MS.gene013955:intron |
CAGAGTTCGCTAGGTACTTT+AGG | 0.226147 | 7.2:+19629868 | MS.gene013955:CDS |
TTTGGGACCAATTATTTAAA+TGG | 0.242961 | 7.2:+19628513 | MS.gene013955:CDS |
ATAGTAGATCGAACATTTCT+TGG | 0.243280 | 7.2:-19628782 | None:intergenic |
ACAAGTTCTGCTCAAGAAAA+TGG | 0.250024 | 7.2:+19629570 | MS.gene013955:CDS |
GTACGAGCTTTCTTGGTTAC+AGG | 0.252237 | 7.2:-19633347 | None:intergenic |
GCGAGTTGCTTCGAAAACTA+TGG | 0.253234 | 7.2:+19631697 | MS.gene013955:CDS |
ATGGAGGCTCCCAGAGGTTT+TGG | 0.274551 | 7.2:+19635403 | MS.gene013955:CDS |
ACATTATACTGCACATATTA+AGG | 0.283483 | 7.2:+19635604 | MS.gene013955:CDS |
TATGATTTGATTGATAATAC+TGG | 0.297467 | 7.2:+19628410 | MS.gene013955:CDS |
GCATCTCGAGACTTTATATA+TGG | 0.304889 | 7.2:-19631962 | None:intergenic |
CTGGCACACATCAACAATTA+TGG | 0.307663 | 7.2:-19632050 | None:intergenic |
GGCCCGTATTTCAAAACTTC+TGG | 0.322558 | 7.2:-19633326 | None:intergenic |
ATATGTTGTAGGTGCGCATT+TGG | 0.331177 | 7.2:+19629333 | MS.gene013955:intron |
TTACACGATTTAAGTCTTCA+TGG | 0.339764 | 7.2:-19631931 | None:intergenic |
AAGAAGTGGCTGATGAATAT+TGG | 0.344813 | 7.2:+19632002 | MS.gene013955:CDS |
AGAGATTCAGAAAACCCTTA+TGG | 0.344968 | 7.2:+19629738 | MS.gene013955:CDS |
TCTCTCTTTGTACACTTGTT+TGG | 0.347684 | 7.2:+19633376 | MS.gene013955:CDS |
AGGTTCAGTACGAGCTTTCT+TGG | 0.348296 | 7.2:-19633354 | None:intergenic |
ATTACTTCCTCGAGAGGTTT+GGG | 0.352900 | 7.2:+19628496 | MS.gene013955:CDS |
GAGGATCTTCAAAATATCTA+TGG | 0.357016 | 7.2:-19632794 | None:intergenic |
AAGAAGGGTTTGCCTGGTCT+TGG | 0.357294 | 7.2:-19628310 | None:intergenic |
GGTGTCAAATTCAATAAATA+AGG | 0.361104 | 7.2:+19633106 | MS.gene013955:CDS |
CTCATTGGGTTGCTAAATCT+TGG | 0.362899 | 7.2:+19629798 | MS.gene013955:CDS |
CTTTCCTGAACATAGCGATT+TGG | 0.367096 | 7.2:+19628346 | MS.gene013955:CDS |
TATGCCCTTACAAATCATTA+TGG | 0.367107 | 7.2:+19635566 | MS.gene013955:CDS |
GAGAGGAAAGTTATTAGTTC+AGG | 0.373182 | 7.2:+19628698 | MS.gene013955:CDS |
TGATTGGTCTCAGAAGCTTC+TGG | 0.374298 | 7.2:+19633271 | MS.gene013955:CDS |
TATTACTTCCTCGAGAGGTT+TGG | 0.375743 | 7.2:+19628495 | MS.gene013955:CDS |
CAAAATATCTATGGATCAAA+TGG | 0.375937 | 7.2:-19632785 | None:intergenic |
ATCATGATTCTCTCTTCATC+TGG | 0.384408 | 7.2:-19625370 | None:intergenic |
ACGATGACATTGTAAGCAAC+GGG | 0.395841 | 7.2:+19635838 | MS.gene013955:CDS |
GGTTCATTCGGTGGTCTCAT+TGG | 0.397951 | 7.2:+19629783 | MS.gene013955:CDS |
TGTTAAATCAAAATCATGAA+TGG | 0.400502 | 7.2:-19635495 | None:intergenic |
TGAAATATTCGATCTTCTGT+TGG | 0.404083 | 7.2:+19628977 | MS.gene013955:CDS |
ATCTCTGCATCGTCCCTGCT+TGG | 0.407036 | 7.2:-19632594 | None:intergenic |
TACAAATCATTATGGTGGTA+TGG | 0.411306 | 7.2:+19635574 | MS.gene013955:CDS |
TGCTTGCATTGATCTTTCAA+TGG | 0.415245 | 7.2:+19633193 | MS.gene013955:CDS |
GTTCATTCGGTGGTCTCATT+GGG | 0.416547 | 7.2:+19629784 | MS.gene013955:CDS |
CCTCTACTGCAAATTCTGTC+TGG | 0.416580 | 7.2:-19628727 | None:intergenic |
AGTCACTGTCATGGTCCTAT+TGG | 0.417495 | 7.2:-19632519 | None:intergenic |
GATGAGATCAATGAAACAAT+AGG | 0.418245 | 7.2:-19632972 | None:intergenic |
GAGATTCAGAAAACCCTTAT+GGG | 0.420378 | 7.2:+19629739 | MS.gene013955:CDS |
CTCTTCATCTGGAGTCAGTT+CGG | 0.420521 | 7.2:-19625359 | None:intergenic |
AGAGTTCGCTAGGTACTTTA+GGG | 0.432261 | 7.2:+19629869 | MS.gene013955:CDS |
TCATCAGCCACTTCTTCATC+AGG | 0.432341 | 7.2:-19631995 | None:intergenic |
AAATGAATCACCAAAACCTC+TGG | 0.433698 | 7.2:-19635413 | None:intergenic |
ATATGGTTTCCATCCTGAAA+TGG | 0.433863 | 7.2:-19632943 | None:intergenic |
ACCGACATTACCTCTACTAT+TGG | 0.439461 | 7.2:+19633157 | MS.gene013955:CDS |
ACAGAGACTTTGTTGCAAAC+TGG | 0.440763 | 7.2:-19632449 | None:intergenic |
TACCACCATAATGATTTGTA+AGG | 0.442051 | 7.2:-19635571 | None:intergenic |
TCTCTGCATCGTCCCTGCTT+GGG | 0.443597 | 7.2:-19632593 | None:intergenic |
GGTGAACTAGCCCTAGCATT+TGG | 0.444967 | 7.2:+19631675 | MS.gene013955:CDS |
GTGCGCATTTGGGATTACTA+TGG | 0.445320 | 7.2:+19629344 | MS.gene013955:CDS |
TGGTCCTATTGGTGGTGGAC+TGG | 0.445511 | 7.2:-19632508 | None:intergenic |
CTCTTAGCATTTCTGCTGGA+TGG | 0.448019 | 7.2:+19631905 | MS.gene013955:CDS |
GCTTGCATTGATCTTTCAAT+GGG | 0.450900 | 7.2:+19633194 | MS.gene013955:CDS |
GAAACAATAGGTGTTCCATA+TGG | 0.452455 | 7.2:-19632960 | None:intergenic |
TTAAAAGGGCGAGGAGCAAT+TGG | 0.458894 | 7.2:-19631735 | None:intergenic |
CATTATGGTGGTATGGGTAG+TGG | 0.459018 | 7.2:+19635581 | MS.gene013955:CDS |
GTTAAATCAAAATCATGAAT+GGG | 0.460871 | 7.2:-19635494 | None:intergenic |
CTTCGAAAACTATGGGCACC+TGG | 0.461703 | 7.2:+19631705 | MS.gene013955:CDS |
CATTGATCTTTCAATGGGAG+AGG | 0.465752 | 7.2:+19633199 | MS.gene013955:CDS |
AGAAGTGGCTGATGAATATT+GGG | 0.466501 | 7.2:+19632003 | MS.gene013955:CDS |
AATGCAGATGGTGGCAACAT+TGG | 0.470385 | 7.2:+19628273 | MS.gene013955:intron |
GAAAACCCTTATGGGACTCT+TGG | 0.471150 | 7.2:+19629747 | MS.gene013955:CDS |
CTCTCCAGTCCACCACCAAT+AGG | 0.473641 | 7.2:+19632504 | MS.gene013955:CDS |
GAGTTCTAGTGTATATTGAT+TGG | 0.475248 | 7.2:+19633255 | MS.gene013955:CDS |
CGCTTACAAGATTACAAAGA+TGG | 0.476658 | 7.2:+19632857 | MS.gene013955:CDS |
AAGAAAATGGATCAGTACAT+AGG | 0.480090 | 7.2:+19629583 | MS.gene013955:CDS |
TTAACTAACCACATATCTTC+AGG | 0.481000 | 7.2:-19633428 | None:intergenic |
GAGCAAGCTTTGCTTTAAAA+GGG | 0.481807 | 7.2:-19631749 | None:intergenic |
CTGACCAAATCGCTATGTTC+AGG | 0.482183 | 7.2:-19628350 | None:intergenic |
AGATGATGTCAATCTACAAA+TGG | 0.482779 | 7.2:+19629409 | MS.gene013955:CDS |
TATGTTGTAGGTGCGCATTT+GGG | 0.484219 | 7.2:+19629334 | MS.gene013955:intron |
GCACAACCAACACGATTCTC+AGG | 0.484869 | 7.2:+19631794 | MS.gene013955:CDS |
ATTTCAGGATGGAAACCATA+TGG | 0.490479 | 7.2:+19632945 | MS.gene013955:CDS |
CAGGCAAACCCTTCTTATGA+TGG | 0.493947 | 7.2:+19628317 | MS.gene013955:CDS |
TGGTGGTGGACTGGAGAGGT+AGG | 0.495460 | 7.2:-19632499 | None:intergenic |
TACAGTAACTGTGCCCAAGC+AGG | 0.497191 | 7.2:+19632580 | MS.gene013955:CDS |
GAAGCAACTCGCCAAATGCT+AGG | 0.497695 | 7.2:-19631686 | None:intergenic |
TGGTGGCCTGTCTACTAGCA+AGG | 0.503594 | 7.2:+19629656 | MS.gene013955:CDS |
CACTGTCATGGTCCTATTGG+TGG | 0.504513 | 7.2:-19632516 | None:intergenic |
CCTCTGAGTGATGATGAAAA+AGG | 0.508998 | 7.2:-19625440 | None:intergenic |
AAGGAAGATCCATCATAAGA+AGG | 0.510225 | 7.2:-19628326 | None:intergenic |
TAGGTGTGTCGCCTTTGAAA+CGG | 0.512358 | 7.2:-19633135 | None:intergenic |
ACATTTGGGCAGGAAACCAT+TGG | 0.512552 | 7.2:+19628933 | MS.gene013955:intron |
GGAGCTCTTAGCATTTCTGC+TGG | 0.515432 | 7.2:+19631901 | MS.gene013955:intron |
AGAAAATGGATCAGTACATA+GGG | 0.516053 | 7.2:+19629584 | MS.gene013955:CDS |
CGAGTTGCTTCGAAAACTAT+GGG | 0.518107 | 7.2:+19631698 | MS.gene013955:CDS |
GTCACCACAAGAGGTTCATT+CGG | 0.518651 | 7.2:+19629771 | MS.gene013955:CDS |
CTCTACTGCAAATTCTGTCT+GGG | 0.519092 | 7.2:-19628726 | None:intergenic |
ACAAGTAATTGAAGTCGTAA+AGG | 0.519494 | 7.2:-19628755 | None:intergenic |
CATCATAAGAAGGGTTTGCC+TGG | 0.521660 | 7.2:-19628316 | None:intergenic |
CCAGACAGAATTTGCAGTAG+AGG | 0.524583 | 7.2:+19628727 | MS.gene013955:CDS |
GGAGCAATTGGTGTTCGCCC+AGG | 0.525269 | 7.2:-19631723 | None:intergenic |
ACAAATCATTATGGTGGTAT+GGG | 0.525673 | 7.2:+19635575 | MS.gene013955:CDS |
AGCTTTGCTTTAAAAGGGCG+AGG | 0.525769 | 7.2:-19631744 | None:intergenic |
CTAAAGTACCTAGCGAACTC+TGG | 0.527697 | 7.2:-19629867 | None:intergenic |
ATTCATACAGATTCTTGTTG+AGG | 0.527765 | 7.2:+19629536 | MS.gene013955:intron |
GGGACAATACAAGTCGACTT+TGG | 0.536583 | 7.2:+19632421 | MS.gene013955:intron |
TGTCATGGTCCTATTGGTGG+TGG | 0.539331 | 7.2:-19632513 | None:intergenic |
ATGCACCCTTGCTAGTAGAC+AGG | 0.539509 | 7.2:-19629662 | None:intergenic |
GTGACACCAAGAGTCCCATA+AGG | 0.542425 | 7.2:-19629753 | None:intergenic |
TTGTCACCTTTCAACAGAAG+AGG | 0.543667 | 7.2:-19633050 | None:intergenic |
CTGTCTCCTCTTCTGTTGAA+AGG | 0.544052 | 7.2:+19633044 | MS.gene013955:CDS |
CATAATTGTTGATGTGTGCC+AGG | 0.548140 | 7.2:+19632051 | MS.gene013955:CDS |
TAAGGATGATACCGTTTCAA+AGG | 0.548596 | 7.2:+19633124 | MS.gene013955:CDS |
AAATCAAGCGTATCAACTGC+TGG | 0.549808 | 7.2:+19629636 | MS.gene013955:CDS |
GGTGGTGGACTGGAGAGGTA+GGG | 0.550155 | 7.2:-19632498 | None:intergenic |
AGGAAGATCCATCATAAGAA+GGG | 0.553173 | 7.2:-19628325 | None:intergenic |
CACATATCTTCAGGCACCAA+AGG | 0.557668 | 7.2:-19633419 | None:intergenic |
ATCTCAACTAGGTATGGTGG+TGG | 0.559757 | 7.2:+19628665 | MS.gene013955:intron |
AGTGCAATAAAGAGGCCAGC+TGG | 0.561631 | 7.2:+19628377 | MS.gene013955:CDS |
GGAAGCGAATTCCGTTCTTG+TGG | 0.566633 | 7.2:+19629605 | MS.gene013955:CDS |
TTACTGTACACGGAGAAGGC+AGG | 0.567219 | 7.2:-19632565 | None:intergenic |
ATTGAGGACAACAATTGAAG+AGG | 0.567772 | 7.2:-19632813 | None:intergenic |
CTTCACTTATGAGTGATATG+TGG | 0.570545 | 7.2:-19635761 | None:intergenic |
TCCATCTCAACTAGGTATGG+TGG | 0.571057 | 7.2:+19628662 | MS.gene013955:intron |
CATCTTTGTAATCTTGTAAG+CGG | 0.571453 | 7.2:-19632856 | None:intergenic |
TACTATAAGAATAAGCAAGA+AGG | 0.573188 | 7.2:+19628799 | MS.gene013955:CDS |
AAGAGGTGACATACAAGTAA+TGG | 0.574012 | 7.2:+19633010 | MS.gene013955:CDS |
TAACGAGAGGATAGTGCTTG+TGG | 0.575716 | 7.2:+19632655 | MS.gene013955:CDS |
CGAATACGTGAACCAAGACC+AGG | 0.576173 | 7.2:+19628298 | MS.gene013955:CDS |
GCGGTCATCATCTTTAATTG+AGG | 0.576325 | 7.2:-19632829 | None:intergenic |
AAGCAACTCGCCAAATGCTA+GGG | 0.576566 | 7.2:-19631685 | None:intergenic |
TCATAATTATCAATACCAGC+TGG | 0.578606 | 7.2:-19628392 | None:intergenic |
TTTGGGATTACTATGGCCAT+CGG | 0.580658 | 7.2:+19629351 | MS.gene013955:CDS |
GCTCAAGCTACTCCCAAAGA+AGG | 0.581218 | 7.2:+19625412 | MS.gene013955:CDS |
GGTGGCCTGTCTACTAGCAA+GGG | 0.581844 | 7.2:+19629657 | MS.gene013955:CDS |
CTTTGGTGCCTGAAGATATG+TGG | 0.581902 | 7.2:+19633420 | MS.gene013955:CDS |
TACTGTACACGGAGAAGGCA+GGG | 0.584097 | 7.2:-19632564 | None:intergenic |
CGAACTCTGGTGTATGAACA+AGG | 0.584234 | 7.2:-19629854 | None:intergenic |
GACGATGACATTGTAAGCAA+CGG | 0.586552 | 7.2:+19635837 | MS.gene013955:CDS |
AATGAATCACCAAAACCTCT+GGG | 0.588338 | 7.2:-19635412 | None:intergenic |
ACAGTTACTGTACACGGAGA+AGG | 0.588490 | 7.2:-19632569 | None:intergenic |
ACTCTTGGTGTCACCACAAG+AGG | 0.588906 | 7.2:+19629762 | MS.gene013955:CDS |
ACTTCTGGCAAAGTCTCAAG+TGG | 0.590353 | 7.2:-19633311 | None:intergenic |
TTCATACACCAGAGTTCGCT+AGG | 0.591122 | 7.2:+19629859 | MS.gene013955:CDS |
ATAAAGTCTCGAGATGCTGA+TGG | 0.591882 | 7.2:+19631968 | MS.gene013955:CDS |
TCTGATGATAAAATCACAAG+AGG | 0.596105 | 7.2:+19632993 | MS.gene013955:CDS |
ATAGTAGAGGTAATGTCGGT+AGG | 0.596197 | 7.2:-19633154 | None:intergenic |
GATTGATAATACTGGATCAG+AGG | 0.597514 | 7.2:+19628418 | MS.gene013955:CDS |
TCATCAAGACATGCTTCCGA+TGG | 0.600964 | 7.2:-19629367 | None:intergenic |
AGCAAACCTGAGAATCGTGT+TGG | 0.601687 | 7.2:-19631800 | None:intergenic |
GGATCAGAGGACTCTAGTAC+AGG | 0.603624 | 7.2:+19628431 | MS.gene013955:CDS |
CTATGTATTACTTCCTCGAG+AGG | 0.604430 | 7.2:+19628490 | MS.gene013955:CDS |
TCAGTTCAAGTGCAATAAAG+AGG | 0.604458 | 7.2:+19628369 | MS.gene013955:CDS |
CTATTGGTGGTGGACTGGAG+AGG | 0.604811 | 7.2:-19632503 | None:intergenic |
TTCGAAAACTATGGGCACCT+GGG | 0.606369 | 7.2:+19631706 | MS.gene013955:CDS |
GGTAGGGAAAGGTACATGAA+AGG | 0.609587 | 7.2:-19632482 | None:intergenic |
ACCAATAGTAGAGGTAATGT+CGG | 0.610155 | 7.2:-19633158 | None:intergenic |
AATTGGTCCCAAACCTCTCG+AGG | 0.610291 | 7.2:-19628503 | None:intergenic |
CAAATCGCTATGTTCAGGAA+AGG | 0.611988 | 7.2:-19628345 | None:intergenic |
ACTAGCAAGGGTGCATCTAG+AGG | 0.614599 | 7.2:+19629669 | MS.gene013955:CDS |
ACTAGAACTCTTGCTGATGA+CGG | 0.615834 | 7.2:-19633242 | None:intergenic |
TGGCCGACCTGATGAAGAAG+TGG | 0.617239 | 7.2:+19631988 | MS.gene013955:CDS |
TTGTAATCTTGTAAGCGGCA+AGG | 0.618788 | 7.2:-19632851 | None:intergenic |
GCCCTTACAAATCATTATGG+TGG | 0.626655 | 7.2:+19635569 | MS.gene013955:CDS |
ACAGTAACTGTGCCCAAGCA+GGG | 0.627024 | 7.2:+19632581 | MS.gene013955:CDS |
ACCACCATAATGATTTGTAA+GGG | 0.627928 | 7.2:-19635570 | None:intergenic |
ATAACTTTCCTCTCCAACGT+AGG | 0.628256 | 7.2:-19628689 | None:intergenic |
TGACACCAAGAGTCCCATAA+GGG | 0.628734 | 7.2:-19629752 | None:intergenic |
GTAAAACAGAACATAGGCAG+CGG | 0.633976 | 7.2:-19635799 | None:intergenic |
AGAGATCTTATACAAGCACT+AGG | 0.635071 | 7.2:+19632611 | MS.gene013955:CDS |
GTTCGCTAGGTACTTTAGGG+AGG | 0.638205 | 7.2:+19629872 | MS.gene013955:CDS |
GTGGTGGACCTACGTTGGAG+AGG | 0.642618 | 7.2:+19628681 | MS.gene013955:CDS |
AAACAAGTGTACAAAGAGAG+AGG | 0.643468 | 7.2:-19633374 | None:intergenic |
CAGCCACTTCTTCATCAGGT+CGG | 0.647006 | 7.2:-19631991 | None:intergenic |
TTATCATCTACCAATAGTAG+AGG | 0.650874 | 7.2:-19633167 | None:intergenic |
CCTCCGGTAAAACAGAACAT+AGG | 0.652037 | 7.2:-19635805 | None:intergenic |
ACCACAAGAGGTTCATTCGG+TGG | 0.652935 | 7.2:+19629774 | MS.gene013955:CDS |
TTGGGCACAGTTACTGTACA+CGG | 0.662789 | 7.2:-19632575 | None:intergenic |
TCAAGCGTATCAACTGCTGG+TGG | 0.665672 | 7.2:+19629639 | MS.gene013955:CDS |
GCTCATTGAAGCATAACGAG+AGG | 0.666855 | 7.2:+19632642 | MS.gene013955:CDS |
TGGACTGGAGAGGTAGGGAA+AGG | 0.668299 | 7.2:-19632493 | None:intergenic |
CGAGAGGATAGTGCTTGTGG+AGG | 0.668464 | 7.2:+19632658 | MS.gene013955:CDS |
TATTGAATTTGACACCACGT+TGG | 0.671514 | 7.2:-19633099 | None:intergenic |
TGATTTATGGAGGCTCCCAG+AGG | 0.679110 | 7.2:+19635397 | MS.gene013955:CDS |
GCATGTCTTGATGAATGACA+TGG | 0.681629 | 7.2:+19629376 | MS.gene013955:CDS |
TGGTTGTGCCCACTGAACTG+AGG | 0.684224 | 7.2:-19631780 | None:intergenic |
ACTCGCATACCATTTCAGGA+TGG | 0.684853 | 7.2:+19632934 | MS.gene013955:CDS |
GTATGGTGGTGGACCTACGT+TGG | 0.692158 | 7.2:+19628676 | MS.gene013955:CDS |
ACCACCGAATGAACCTCTTG+TGG | 0.692235 | 7.2:-19629775 | None:intergenic |
ATACTTACAACCATGCCGAG+TGG | 0.709691 | 7.2:-19629924 | None:intergenic |
TAATCTTGTAAGCGGCAAGG+CGG | 0.729081 | 7.2:-19632848 | None:intergenic |
CGATGACATTGTAAGCAACG+GGG | 0.729656 | 7.2:+19635839 | MS.gene013955:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 19625325 | 19635866 | 19625325 | ID=MS.gene013955 |
chr7.2 | mRNA | 19625325 | 19635866 | 19625325 | ID=MS.gene013955.t1;Parent=MS.gene013955 |
chr7.2 | exon | 19625325 | 19625461 | 19625325 | ID=MS.gene013955.t1.exon1;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19625325 | 19625461 | 19625325 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19628280 | 19628534 | 19628280 | ID=MS.gene013955.t1.exon2;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19628280 | 19628534 | 19628280 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19628676 | 19628820 | 19628676 | ID=MS.gene013955.t1.exon3;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19628676 | 19628820 | 19628676 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19628945 | 19629004 | 19628945 | ID=MS.gene013955.t1.exon4;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19628945 | 19629004 | 19628945 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19629344 | 19629439 | 19629344 | ID=MS.gene013955.t1.exon5;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19629344 | 19629439 | 19629344 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19629546 | 19629938 | 19629546 | ID=MS.gene013955.t1.exon6;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19629546 | 19629938 | 19629546 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19631675 | 19631815 | 19631675 | ID=MS.gene013955.t1.exon7;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19631675 | 19631815 | 19631675 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19631902 | 19632072 | 19631902 | ID=MS.gene013955.t1.exon8;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19631902 | 19632072 | 19631902 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19632422 | 19632679 | 19632422 | ID=MS.gene013955.t1.exon9;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19632422 | 19632679 | 19632422 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19632777 | 19632901 | 19632777 | ID=MS.gene013955.t1.exon10;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19632777 | 19632901 | 19632777 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19632932 | 19633441 | 19632932 | ID=MS.gene013955.t1.exon11;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19632932 | 19633441 | 19632932 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19635352 | 19635625 | 19635352 | ID=MS.gene013955.t1.exon12;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19635352 | 19635625 | 19635352 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
chr7.2 | exon | 19635723 | 19635866 | 19635723 | ID=MS.gene013955.t1.exon13;Parent=MS.gene013955.t1 |
chr7.2 | CDS | 19635723 | 19635866 | 19635723 | ID=cds.MS.gene013955.t1;Parent=MS.gene013955.t1 |
Gene Sequence |
Protein sequence |