Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062155.t1 | XP_013468875.1 | 96.6 | 907 | 30 | 1 | 1 | 906 | 1 | 907 | 0.00E+00 | 1704.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062155.t1 | Q9ZSB5 | 58.9 | 943 | 341 | 11 | 1 | 925 | 1 | 914 | 9.2e-311 | 1067.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062155.t1 | A0A072VM85 | 96.6 | 907 | 30 | 1 | 1 | 906 | 1 | 907 | 0.0e+00 | 1704.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057682 | MS.gene062155 | 0.841311 | 5.13E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene057833 | MS.gene062155 | PPI |
MS.gene013955 | MS.gene062155 | PPI |
MS.gene07512 | MS.gene062155 | PPI |
MS.gene057841 | MS.gene062155 | PPI |
MS.gene062155 | MS.gene26652 | PPI |
MS.gene062155 | MS.gene49850 | PPI |
MS.gene062155 | MS.gene037502 | PPI |
MS.gene07513 | MS.gene062155 | PPI |
MS.gene86827 | MS.gene062155 | PPI |
MS.gene030258 | MS.gene062155 | PPI |
MS.gene062155 | MS.gene70072 | PPI |
MS.gene062155 | MS.gene004975 | PPI |
MS.gene017678 | MS.gene062155 | PPI |
MS.gene062155 | MS.gene75111 | PPI |
MS.gene057838 | MS.gene062155 | PPI |
MS.gene062155 | MS.gene70077 | PPI |
MS.gene66284 | MS.gene062155 | PPI |
MS.gene70078 | MS.gene062155 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062155.t1 | MTR_1g077980 | 96.582 | 907 | 30 | 1 | 1 | 906 | 1 | 907 | 0.0 | 1814 |
MS.gene062155.t1 | MTR_7g088760 | 48.891 | 902 | 429 | 14 | 19 | 906 | 14 | 897 | 0.0 | 854 |
MS.gene062155.t1 | MTR_7g088760 | 47.987 | 919 | 429 | 15 | 19 | 906 | 14 | 914 | 0.0 | 843 |
MS.gene062155.t1 | MTR_2g087710 | 45.782 | 806 | 372 | 12 | 120 | 906 | 99 | 858 | 0.0 | 650 |
MS.gene062155.t1 | MTR_7g106570 | 44.938 | 810 | 397 | 14 | 120 | 906 | 101 | 884 | 0.0 | 617 |
MS.gene062155.t1 | MTR_1g014260 | 32.759 | 174 | 91 | 6 | 756 | 906 | 351 | 521 | 4.14e-21 | 99.4 |
MS.gene062155.t1 | MTR_1g014260 | 28.723 | 188 | 114 | 3 | 317 | 504 | 179 | 346 | 7.36e-15 | 79.3 |
MS.gene062155.t1 | MTR_4g115880 | 31.325 | 166 | 88 | 5 | 764 | 906 | 415 | 577 | 9.03e-20 | 94.7 |
MS.gene062155.t1 | MTR_4g115880 | 30.144 | 209 | 97 | 5 | 317 | 497 | 195 | 382 | 2.24e-16 | 84.0 |
MS.gene062155.t1 | MTR_1g014680 | 36.538 | 156 | 92 | 4 | 761 | 913 | 339 | 490 | 1.10e-17 | 89.0 |
MS.gene062155.t1 | MTR_6g022310 | 37.838 | 148 | 86 | 5 | 760 | 906 | 280 | 422 | 1.46e-17 | 88.2 |
MS.gene062155.t1 | MTR_6g022310 | 29.897 | 194 | 106 | 7 | 319 | 510 | 127 | 292 | 2.06e-11 | 68.2 |
MS.gene062155.t1 | MTR_3g083600 | 31.837 | 245 | 130 | 6 | 264 | 499 | 170 | 386 | 1.74e-17 | 88.6 |
MS.gene062155.t1 | MTR_3g083600 | 34.615 | 130 | 69 | 4 | 792 | 906 | 938 | 1066 | 1.05e-13 | 76.3 |
MS.gene062155.t1 | MTR_3g100480 | 33.544 | 158 | 98 | 4 | 761 | 915 | 741 | 894 | 4.81e-17 | 87.0 |
MS.gene062155.t1 | MTR_2g071620 | 33.548 | 155 | 96 | 4 | 764 | 915 | 625 | 775 | 1.21e-16 | 85.5 |
MS.gene062155.t1 | MTR_5g032380 | 35.135 | 148 | 89 | 4 | 764 | 908 | 582 | 725 | 7.88e-16 | 82.8 |
MS.gene062155.t1 | MTR_5g030360 | 37.415 | 147 | 84 | 6 | 764 | 906 | 304 | 446 | 8.46e-16 | 82.4 |
MS.gene062155.t1 | MTR_8g090190 | 33.987 | 153 | 92 | 5 | 750 | 899 | 194 | 340 | 2.85e-15 | 79.0 |
MS.gene062155.t1 | MTR_6g022300 | 36.806 | 144 | 85 | 5 | 764 | 906 | 224 | 362 | 3.49e-15 | 80.5 |
MS.gene062155.t1 | MTR_4g130940 | 35.811 | 148 | 90 | 5 | 761 | 906 | 248 | 392 | 3.96e-15 | 80.5 |
MS.gene062155.t1 | MTR_4g130940 | 35.811 | 148 | 90 | 5 | 761 | 906 | 248 | 392 | 4.39e-15 | 80.5 |
MS.gene062155.t1 | MTR_6g022290 | 36.111 | 144 | 86 | 5 | 764 | 906 | 186 | 324 | 8.63e-15 | 79.0 |
MS.gene062155.t1 | MTR_6g022290 | 27.551 | 196 | 108 | 6 | 319 | 510 | 29 | 194 | 1.89e-11 | 68.2 |
MS.gene062155.t1 | MTR_5g066000 | 30.380 | 158 | 102 | 5 | 761 | 915 | 699 | 851 | 2.24e-14 | 78.2 |
MS.gene062155.t1 | MTR_8g471100 | 36.552 | 145 | 84 | 5 | 769 | 909 | 366 | 506 | 2.60e-14 | 77.4 |
MS.gene062155.t1 | MTR_8g067060 | 36.552 | 145 | 84 | 5 | 769 | 909 | 357 | 497 | 2.66e-14 | 77.4 |
MS.gene062155.t1 | MTR_3g087140 | 31.373 | 153 | 96 | 4 | 750 | 899 | 194 | 340 | 4.92e-14 | 75.1 |
MS.gene062155.t1 | MTR_3g100480 | 29.570 | 186 | 98 | 5 | 761 | 915 | 741 | 924 | 1.04e-13 | 76.3 |
MS.gene062155.t1 | MTR_0279s0020 | 35.766 | 137 | 77 | 5 | 785 | 920 | 172 | 298 | 1.54e-12 | 70.5 |
MS.gene062155.t1 | MTR_0279s0020 | 36.585 | 123 | 72 | 4 | 785 | 906 | 163 | 280 | 2.93e-12 | 68.9 |
MS.gene062155.t1 | MTR_2g070390 | 33.129 | 163 | 102 | 6 | 764 | 924 | 185 | 342 | 9.03e-12 | 69.3 |
MS.gene062155.t1 | MTR_3g108660 | 33.846 | 130 | 82 | 3 | 764 | 890 | 255 | 383 | 3.76e-11 | 67.8 |
MS.gene062155.t1 | MTR_3g108660 | 33.846 | 130 | 82 | 3 | 764 | 890 | 255 | 383 | 4.57e-11 | 67.4 |
MS.gene062155.t1 | MTR_1g010040 | 31.538 | 130 | 85 | 3 | 764 | 890 | 255 | 383 | 9.12e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062155.t1 | AT4G10570 | 61.587 | 945 | 312 | 12 | 1 | 925 | 1 | 914 | 0.0 | 1126 |
MS.gene062155.t1 | AT4G10590 | 62.541 | 921 | 299 | 12 | 1 | 906 | 1 | 890 | 0.0 | 1121 |
MS.gene062155.t1 | AT4G10590 | 62.541 | 921 | 299 | 12 | 1 | 906 | 1 | 890 | 0.0 | 1121 |
MS.gene062155.t1 | AT4G10590 | 62.541 | 921 | 299 | 12 | 1 | 906 | 1 | 890 | 0.0 | 1121 |
MS.gene062155.t1 | AT4G10590 | 62.541 | 921 | 299 | 12 | 1 | 906 | 1 | 890 | 0.0 | 1121 |
MS.gene062155.t1 | AT1G32850 | 59.955 | 894 | 316 | 12 | 20 | 906 | 18 | 876 | 0.0 | 1042 |
MS.gene062155.t1 | AT2G40930 | 49.297 | 925 | 423 | 17 | 19 | 917 | 15 | 919 | 0.0 | 845 |
MS.gene062155.t1 | AT2G40930 | 49.297 | 925 | 423 | 17 | 19 | 917 | 15 | 919 | 0.0 | 845 |
MS.gene062155.t1 | AT5G22030 | 47.880 | 802 | 367 | 17 | 120 | 906 | 100 | 865 | 0.0 | 697 |
MS.gene062155.t1 | AT5G22030 | 50.136 | 734 | 315 | 17 | 188 | 906 | 210 | 907 | 0.0 | 674 |
MS.gene062155.t1 | AT2G32780 | 35.533 | 197 | 97 | 6 | 310 | 499 | 189 | 362 | 1.02e-19 | 95.9 |
MS.gene062155.t1 | AT2G32780 | 36.641 | 131 | 63 | 5 | 793 | 906 | 952 | 1079 | 3.67e-12 | 71.2 |
MS.gene062155.t1 | AT1G04860 | 34.783 | 184 | 84 | 4 | 318 | 495 | 230 | 383 | 7.48e-19 | 92.8 |
MS.gene062155.t1 | AT1G04860 | 38.583 | 127 | 62 | 6 | 793 | 906 | 830 | 953 | 1.32e-11 | 69.3 |
MS.gene062155.t1 | AT2G24640 | 35.583 | 163 | 98 | 4 | 761 | 920 | 162 | 320 | 9.48e-19 | 91.3 |
MS.gene062155.t1 | AT4G31670 | 37.179 | 156 | 91 | 4 | 761 | 913 | 326 | 477 | 1.10e-18 | 91.7 |
MS.gene062155.t1 | AT2G24640 | 35.583 | 163 | 98 | 4 | 761 | 920 | 332 | 490 | 2.34e-18 | 90.9 |
MS.gene062155.t1 | AT5G46740 | 36.986 | 146 | 85 | 5 | 764 | 906 | 115 | 256 | 9.51e-18 | 88.2 |
MS.gene062155.t1 | AT5G46740 | 36.000 | 150 | 89 | 5 | 760 | 906 | 320 | 465 | 1.66e-17 | 88.2 |
MS.gene062155.t1 | AT1G17110 | 33.758 | 157 | 97 | 4 | 764 | 917 | 603 | 755 | 9.82e-17 | 85.9 |
MS.gene062155.t1 | AT1G17110 | 33.758 | 157 | 97 | 4 | 764 | 917 | 599 | 751 | 1.04e-16 | 85.9 |
MS.gene062155.t1 | AT1G17110 | 33.758 | 157 | 97 | 4 | 764 | 917 | 599 | 751 | 1.04e-16 | 85.9 |
MS.gene062155.t1 | AT5G10790 | 28.488 | 172 | 94 | 5 | 764 | 909 | 233 | 401 | 1.67e-16 | 83.6 |
MS.gene062155.t1 | AT5G10790 | 28.488 | 172 | 94 | 5 | 764 | 909 | 362 | 530 | 2.69e-16 | 83.6 |
MS.gene062155.t1 | AT4G17895 | 34.641 | 153 | 93 | 5 | 764 | 913 | 331 | 479 | 1.69e-15 | 81.6 |
MS.gene062155.t1 | AT4G24560 | 33.562 | 146 | 89 | 4 | 764 | 906 | 703 | 843 | 5.98e-15 | 80.1 |
MS.gene062155.t1 | AT2G22310 | 35.915 | 142 | 77 | 6 | 764 | 899 | 174 | 307 | 3.34e-14 | 75.5 |
MS.gene062155.t1 | AT2G22310 | 35.915 | 142 | 77 | 6 | 764 | 899 | 169 | 302 | 3.53e-14 | 75.5 |
MS.gene062155.t1 | AT5G65450 | 33.117 | 154 | 95 | 5 | 764 | 913 | 506 | 655 | 5.12e-14 | 77.0 |
MS.gene062155.t1 | AT4G39910 | 35.252 | 139 | 82 | 5 | 764 | 899 | 211 | 344 | 5.57e-14 | 75.1 |
MS.gene062155.t1 | AT5G65450 | 33.117 | 154 | 95 | 5 | 764 | 913 | 487 | 636 | 5.71e-14 | 76.6 |
MS.gene062155.t1 | AT2G22310 | 35.915 | 142 | 77 | 6 | 764 | 899 | 206 | 339 | 5.96e-14 | 75.1 |
MS.gene062155.t1 | AT5G57990 | 31.757 | 148 | 91 | 5 | 760 | 906 | 268 | 406 | 3.20e-13 | 74.3 |
MS.gene062155.t1 | AT3G14400 | 31.288 | 163 | 106 | 5 | 761 | 921 | 188 | 346 | 1.44e-11 | 68.9 |
MS.gene062155.t1 | AT3G14400 | 28.358 | 201 | 110 | 5 | 320 | 511 | 25 | 200 | 5.58e-11 | 67.0 |
MS.gene062155.t1 | AT3G49600 | 32.143 | 140 | 86 | 4 | 764 | 895 | 253 | 391 | 2.72e-11 | 68.2 |
MS.gene062155.t1 | AT3G49600 | 32.143 | 140 | 86 | 4 | 764 | 895 | 253 | 391 | 2.72e-11 | 68.2 |
MS.gene062155.t1 | AT3G49600 | 32.143 | 140 | 86 | 4 | 764 | 895 | 253 | 391 | 2.72e-11 | 68.2 |
MS.gene062155.t1 | AT4G30890 | 36.842 | 114 | 68 | 4 | 795 | 906 | 436 | 547 | 7.20e-11 | 66.2 |
MS.gene062155.t1 | AT4G30890 | 36.842 | 114 | 68 | 4 | 795 | 906 | 436 | 547 | 7.20e-11 | 66.2 |
MS.gene062155.t1 | AT4G30890 | 36.842 | 114 | 68 | 4 | 795 | 906 | 436 | 547 | 7.20e-11 | 66.2 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTCCCTTGGTTACTTATT+TGG | 0.167537 | 1.2:-62650341 | MS.gene062155:CDS |
AATTATATTAGGCTTCTATT+TGG | 0.193463 | 1.2:-62654468 | MS.gene062155:intron |
GTGGAAATTGCCAGAGATTT+TGG | 0.202696 | 1.2:-62649677 | MS.gene062155:CDS |
GAGCTAGTGTGCAAAGTTAA+AGG | 0.260338 | 1.2:-62654596 | MS.gene062155:CDS |
GTGAATTAGCACTTGCATTT+GGG | 0.290290 | 1.2:-62653531 | MS.gene062155:CDS |
TTGAGGAAACTTTGGTCCTC+TGG | 0.299288 | 1.2:-62653502 | MS.gene062155:CDS |
CTTCCTGAAGTTCACAAAAC+TGG | 0.302951 | 1.2:-62649947 | MS.gene062155:CDS |
GCTGATCGTTCCTCTCATTC+TGG | 0.315839 | 1.2:-62654022 | MS.gene062155:CDS |
GGAATCATTGACTTCAATAA+AGG | 0.321302 | 1.2:-62651246 | MS.gene062155:CDS |
TTTCCACAAGTCCAGTTTCT+TGG | 0.325981 | 1.2:+62649693 | None:intergenic |
ATGCAGTCCATCCAATAAAA+AGG | 0.328639 | 1.2:+62652061 | None:intergenic |
GGTGAATTAGCACTTGCATT+TGG | 0.331811 | 1.2:-62653532 | MS.gene062155:CDS |
TTAATTTCAGCTTCAGAAAC+AGG | 0.340496 | 1.2:+62649262 | None:intergenic |
CTCTGCAGCAACCATGCTTC+AGG | 0.341873 | 1.2:+62651471 | None:intergenic |
AACGATGACGATTGCTGAAT+CGG | 0.342025 | 1.2:-62658999 | None:intergenic |
TTGGAAGAAGACCCTCAATA+TGG | 0.349829 | 1.2:-62650322 | MS.gene062155:CDS |
AGCAACCATTACGGTGGTTT+AGG | 0.350370 | 1.2:-62649508 | MS.gene062155:CDS |
GAATAGCGCTCTTCAATGTT+TGG | 0.351618 | 1.2:-62653762 | MS.gene062155:CDS |
GAACTTCCCCATTCACAATC+TGG | 0.353781 | 1.2:-62649593 | MS.gene062155:CDS |
AAAACCCAGTGCACATATAA+AGG | 0.354307 | 1.2:-62650029 | MS.gene062155:CDS |
TGTTCTCTGGTGCAAAGTGC+CGG | 0.355262 | 1.2:+62650145 | None:intergenic |
AATTGTAAAATTAAGCAAAA+AGG | 0.364916 | 1.2:-62655378 | MS.gene062155:intron |
ATATAAAGGTCTTTGCTGAT+TGG | 0.366153 | 1.2:-62650015 | MS.gene062155:CDS |
ATTATATTAGGCTTCTATTT+GGG | 0.367380 | 1.2:-62654467 | MS.gene062155:intron |
ATCAACTTCCTTGGCAATGC+TGG | 0.378205 | 1.2:+62655485 | None:intergenic |
GTCTGTGTTCCTTGCATTGA+GGG | 0.381184 | 1.2:+62649722 | None:intergenic |
GCCAAGGAAGTTGATTTCTC+AGG | 0.383623 | 1.2:-62655477 | MS.gene062155:CDS |
GATGGAAGAAGCGACGTCTT+AGG | 0.385620 | 1.2:-62649187 | MS.gene062155:CDS |
AAGTTCATCACTGACTACTA+TGG | 0.386122 | 1.2:-62653861 | MS.gene062155:CDS |
ACAAAGAAATAGCTTCTTGC+CGG | 0.386336 | 1.2:+62649906 | None:intergenic |
CAGACAAGCTACCAAGAAAC+TGG | 0.387149 | 1.2:-62649704 | MS.gene062155:CDS |
TGGTAATGATAAGTACATAA+AGG | 0.388653 | 1.2:+62651580 | None:intergenic |
GGTGGAGAGAGGAAGATCTT+TGG | 0.388726 | 1.2:-62650364 | MS.gene062155:CDS |
AGATCATCTGTATCAATTGC+AGG | 0.391184 | 1.2:-62653950 | MS.gene062155:CDS |
TGACGTGACTGTCATCAAAA+TGG | 0.395919 | 1.2:+62649287 | None:intergenic |
TCATTCTGGTGTGCATTCAA+TGG | 0.399599 | 1.2:-62654008 | MS.gene062155:CDS |
TATCACAGATGCCTTGTCAA+TGG | 0.404625 | 1.2:+62650051 | None:intergenic |
TGTTGCACCACGTGCGTTCA+AGG | 0.406091 | 1.2:-62653470 | MS.gene062155:CDS |
AGACAGTAATTGTCATTGTC+CGG | 0.406135 | 1.2:+62651540 | None:intergenic |
TCAATCACCTTTAGATTAAG+TGG | 0.406422 | 1.2:+62655422 | None:intergenic |
CAGAGATCTTTGCCAAGCAT+TGG | 0.409945 | 1.2:-62651453 | MS.gene062155:CDS |
GTGCAAAGTGCCGGGTTCCT+CGG | 0.410838 | 1.2:+62650154 | None:intergenic |
TTCTCTTCCTCCGGTGAAAT+CGG | 0.411393 | 1.2:+62658944 | None:intergenic |
AGAAATATTGCATCGACATC+TGG | 0.412333 | 1.2:-62651168 | MS.gene062155:CDS |
TCTCATGAAGGGAAGGAAAC+TGG | 0.414310 | 1.2:-62650232 | MS.gene062155:CDS |
ATTATATCAGAATTATCAAT+TGG | 0.417193 | 1.2:+62655951 | None:intergenic |
CACTGAATTGTGGAGCAAAT+CGG | 0.419702 | 1.2:+62653437 | None:intergenic |
AGTTTGCATTCTCCAATGTC+TGG | 0.419774 | 1.2:+62654401 | None:intergenic |
AATGGTTGCTGATTGCATAA+AGG | 0.420321 | 1.2:+62649521 | None:intergenic |
CAAGTTGGCAGAGGTATGTT+GGG | 0.420787 | 1.2:-62656064 | MS.gene062155:CDS |
ATCACAGATGCCTTGTCAAT+GGG | 0.425512 | 1.2:+62650052 | None:intergenic |
GAGTCCTTCATTTCAATGTA+AGG | 0.429050 | 1.2:+62652011 | None:intergenic |
AATTCTGATATAATTTCAAA+TGG | 0.429572 | 1.2:-62655942 | MS.gene062155:CDS |
TTTAGCAGGACTGCAGAACT+TGG | 0.431003 | 1.2:-62653801 | MS.gene062155:CDS |
GATGATCTTGGAGGTTCTAA+TGG | 0.431147 | 1.2:+62653965 | None:intergenic |
GGATGTCCCCTCTTGTTCTC+TGG | 0.432883 | 1.2:+62650132 | None:intergenic |
TCGGAGCTTAATTTGAAAGA+TGG | 0.434560 | 1.2:-62658893 | MS.gene062155:CDS |
GTTCTCTGGTGCAAAGTGCC+GGG | 0.438834 | 1.2:+62650146 | None:intergenic |
TATACTTTATTATTTCCAAT+AGG | 0.439148 | 1.2:-62658865 | MS.gene062155:intron |
AATGGTCACTCAAGTGGGTC+TGG | 0.439704 | 1.2:-62653911 | MS.gene062155:CDS |
AAGACGTCGCTTCTTCCATC+TGG | 0.440402 | 1.2:+62649190 | None:intergenic |
GGGACTTGTTGAGGAAACTT+TGG | 0.440723 | 1.2:-62653510 | MS.gene062155:CDS |
GGTAATGATAAGTACATAAA+GGG | 0.444185 | 1.2:+62651581 | None:intergenic |
ATCAACATGGAGAATCCTTT+AGG | 0.444926 | 1.2:-62653689 | MS.gene062155:CDS |
GCAGGCCATCAGAAGATTGC+TGG | 0.446316 | 1.2:+62656015 | None:intergenic |
CAATCTTACCACATGTCATC+TGG | 0.451523 | 1.2:+62649842 | None:intergenic |
ACGATCCGTTTCTCTTCCTC+CGG | 0.451906 | 1.2:+62658935 | None:intergenic |
GACATTGGAGAATGCAAACT+TGG | 0.453854 | 1.2:-62654398 | MS.gene062155:CDS |
ACTGAATTGTGGAGCAAATC+GGG | 0.454165 | 1.2:+62653438 | None:intergenic |
AAGGAAACTGGTTTCATCTC+AGG | 0.457552 | 1.2:-62650220 | MS.gene062155:CDS |
ATCAGAATTATCAATTGGAC+CGG | 0.457774 | 1.2:+62655956 | None:intergenic |
GCAATTGATACAGATGATCT+TGG | 0.458422 | 1.2:+62653953 | None:intergenic |
AGAGATCTTTGCCAAGCATT+GGG | 0.458789 | 1.2:-62651452 | MS.gene062155:CDS |
ACCTCAATGCTGTACTGCTT+CGG | 0.459105 | 1.2:+62655449 | None:intergenic |
ATCTGGTCCTAGAGGTTCTT+CGG | 0.459925 | 1.2:+62649859 | None:intergenic |
GGTCAAATCCAGATTGTGAA+TGG | 0.461365 | 1.2:+62649585 | None:intergenic |
CATTCTGGTGTGCATTCAAT+GGG | 0.461609 | 1.2:-62654007 | MS.gene062155:CDS |
GGTGAAAGAGGTGGTTTAGC+AGG | 0.462978 | 1.2:-62653815 | MS.gene062155:CDS |
TCAATGTTGGCTCCATATTG+AGG | 0.465522 | 1.2:+62650310 | None:intergenic |
CAAGTATGGGAAAGGCTGTT+GGG | 0.466815 | 1.2:-62655843 | MS.gene062155:CDS |
GTCAAATCCAGATTGTGAAT+GGG | 0.468661 | 1.2:+62649586 | None:intergenic |
CTTCGTTAGTTAAAACAAGT+TGG | 0.468962 | 1.2:+62650092 | None:intergenic |
GATAAATATGACGTCTATAG+TGG | 0.470173 | 1.2:-62653836 | MS.gene062155:CDS |
TCAAGTTGGCAGAGGTATGT+TGG | 0.470261 | 1.2:-62656065 | MS.gene062155:CDS |
AAAGACCTTTATATGTGCAC+TGG | 0.472356 | 1.2:+62650024 | None:intergenic |
TATGCAATCAGCAACCATTA+CGG | 0.474161 | 1.2:-62649517 | MS.gene062155:CDS |
TAAAGGTTATACACATAGGA+TGG | 0.475468 | 1.2:+62649538 | None:intergenic |
CAATGTTGGCTCCATATTGA+GGG | 0.480052 | 1.2:+62650311 | None:intergenic |
CGGAGCTTAATTTGAAAGAT+GGG | 0.480500 | 1.2:-62658892 | MS.gene062155:CDS |
GAAGATCTTTGGAACTCCCT+TGG | 0.482950 | 1.2:-62650353 | MS.gene062155:CDS |
CCCTGAGAAATCAACTTCCT+TGG | 0.487604 | 1.2:+62655476 | None:intergenic |
TATATGATGCAAGCTATTTG+AGG | 0.490281 | 1.2:-62649973 | MS.gene062155:CDS |
TGAGGAAACTTTGGTCCTCT+GGG | 0.491053 | 1.2:-62653501 | MS.gene062155:CDS |
GAAGGAGTTAATTAAGCAAT+CGG | 0.491093 | 1.2:-62658912 | MS.gene062155:CDS |
TGTCTGTGTTCCTTGCATTG+AGG | 0.491807 | 1.2:+62649721 | None:intergenic |
AGCATGCAGTGCCCAATGCT+TGG | 0.492001 | 1.2:+62651441 | None:intergenic |
TTGCATTTGGGGACTTGTTG+AGG | 0.494177 | 1.2:-62653519 | MS.gene062155:CDS |
CATTACGGTGGTTTAGGTGG+TGG | 0.494345 | 1.2:-62649502 | MS.gene062155:CDS |
CCAAGGAAGTTGATTTCTCA+GGG | 0.495656 | 1.2:-62655476 | MS.gene062155:CDS |
ACAAGTATGGGAAAGGCTGT+TGG | 0.500405 | 1.2:-62655844 | MS.gene062155:CDS |
TTAGCAGGACTGCAGAACTT+GGG | 0.500451 | 1.2:-62653800 | MS.gene062155:CDS |
CAACTCATCCCATTATCAAT+CGG | 0.501111 | 1.2:+62658971 | None:intergenic |
AAAGCCTTACATTGAAATGA+AGG | 0.501423 | 1.2:-62652015 | MS.gene062155:CDS |
CACTTCCTTCCACTGTCACC+CGG | 0.503998 | 1.2:-62651559 | MS.gene062155:CDS |
CTCGGATGGTAGGCCGGATG+AGG | 0.505210 | 1.2:-62651991 | MS.gene062155:CDS |
ATATGATGCAAGCTATTTGA+GGG | 0.506090 | 1.2:-62649972 | MS.gene062155:CDS |
TTTAGTTCCTCAACAAGTAT+GGG | 0.508258 | 1.2:-62655856 | MS.gene062155:CDS |
ATTGAAGTCAATGATTCCAA+TGG | 0.513982 | 1.2:+62651251 | None:intergenic |
ACGTGCGTTCAAGGGAAAGC+TGG | 0.515230 | 1.2:-62653461 | MS.gene062155:CDS |
CAAAGAAATAGCTTCTTGCC+GGG | 0.515685 | 1.2:+62649907 | None:intergenic |
GTCCATACACGCATTCCTAA+AGG | 0.518820 | 1.2:+62653674 | None:intergenic |
CAAATGGAAGTAATTGTGAC+GGG | 0.525856 | 1.2:-62655926 | MS.gene062155:CDS |
AATGGGAAATGAATTAGCAT+TGG | 0.527118 | 1.2:-62653990 | MS.gene062155:CDS |
AGTTGGAAGCGACGTCCAGA+TGG | 0.527287 | 1.2:-62649205 | MS.gene062155:CDS |
AACTAAGTCTCATGAAGGGA+AGG | 0.531234 | 1.2:-62650239 | MS.gene062155:CDS |
TTTAGATATTCATCGACCAT+TGG | 0.531240 | 1.2:-62655898 | MS.gene062155:CDS |
AGCCTTTCCCATACTTGTTG+AGG | 0.532585 | 1.2:+62655849 | None:intergenic |
ATTGATTGTTGATGAATGCC+AGG | 0.532873 | 1.2:-62651922 | MS.gene062155:intron |
GAAGGACTCGGATGGTAGGC+CGG | 0.535738 | 1.2:-62651997 | MS.gene062155:CDS |
AGTGAACAGTATCGGCATGC+AGG | 0.538726 | 1.2:+62655997 | None:intergenic |
GACATATGTACATAGAATGT+TGG | 0.539698 | 1.2:-62650287 | MS.gene062155:CDS |
ATTGTCCGGGTGACAGTGGA+AGG | 0.540739 | 1.2:+62651554 | None:intergenic |
GGTGTACCCACTTAATCTAA+AGG | 0.542422 | 1.2:-62655429 | MS.gene062155:CDS |
AACTAACTTGAGAATCATGC+TGG | 0.546603 | 1.2:+62653407 | None:intergenic |
AGCTTTCCCTTGAACGCACG+TGG | 0.549334 | 1.2:+62653463 | None:intergenic |
AAGTATGTGAAAAGTAAAGA+TGG | 0.549335 | 1.2:-62649562 | MS.gene062155:CDS |
GACGTCTATAGTGGTGAAAG+AGG | 0.550637 | 1.2:-62653827 | MS.gene062155:CDS |
GACAGTAATTGTCATTGTCC+GGG | 0.551707 | 1.2:+62651541 | None:intergenic |
AAGAGCGCTATTCATAAAGC+AGG | 0.553621 | 1.2:+62653772 | None:intergenic |
TCTTCAACTAAGTCTCATGA+AGG | 0.553689 | 1.2:-62650244 | MS.gene062155:CDS |
TTGTCTAATGGTCACTCAAG+TGG | 0.555942 | 1.2:-62653917 | MS.gene062155:CDS |
TCATTTGCGACTTCCTCATC+CGG | 0.556059 | 1.2:+62651978 | None:intergenic |
TGTTCACTGAACAGTGGGAA+GGG | 0.557069 | 1.2:-62650385 | MS.gene062155:intron |
TGAATTAGCACTTGCATTTG+GGG | 0.557302 | 1.2:-62653530 | MS.gene062155:CDS |
TTCAGGACAGTCACAGTGTA+CGG | 0.560190 | 1.2:+62651488 | None:intergenic |
CACCACCTAAACCACCGTAA+TGG | 0.561137 | 1.2:+62649503 | None:intergenic |
TCGTTATCTAGATAATCCAT+TGG | 0.561503 | 1.2:-62651267 | MS.gene062155:CDS |
ATTACGGTGGTTTAGGTGGT+GGG | 0.561699 | 1.2:-62649501 | MS.gene062155:CDS |
GCGACGTCTTAGGTTCATGC+AGG | 0.563950 | 1.2:-62649177 | MS.gene062155:CDS |
ATCGACTCAAGAGTGGAGCC+AGG | 0.567147 | 1.2:-62651202 | MS.gene062155:CDS |
GATCATCTGTATCAATTGCA+GGG | 0.567157 | 1.2:-62653949 | MS.gene062155:CDS |
GAACAAAGAGTCATTGCTGA+CGG | 0.567578 | 1.2:-62654431 | MS.gene062155:CDS |
TGTCTAATGGTCACTCAAGT+GGG | 0.570423 | 1.2:-62653916 | MS.gene062155:CDS |
AAAGGATGAAGAACATATTG+TGG | 0.573464 | 1.2:-62651228 | MS.gene062155:CDS |
GAGTTGTGTGCCGATTTCAC+CGG | 0.573770 | 1.2:-62658954 | MS.gene062155:CDS |
AAGACCTTTATATGTGCACT+GGG | 0.573883 | 1.2:+62650025 | None:intergenic |
GAACAAGAGGGGACATCCTG+TGG | 0.574752 | 1.2:-62650127 | MS.gene062155:CDS |
TCAAATGGAAGTAATTGTGA+CGG | 0.574962 | 1.2:-62655927 | MS.gene062155:CDS |
TAGCAGGACTGCAGAACTTG+GGG | 0.576248 | 1.2:-62653799 | MS.gene062155:CDS |
TATGGGAAAGGCTGTTGGGA+TGG | 0.576501 | 1.2:-62655839 | MS.gene062155:intron |
AGGTATGTTGGGCATTGTGA+TGG | 0.577486 | 1.2:-62656053 | MS.gene062155:CDS |
AGGAAGTCGCAAATGAGTGT+TGG | 0.577729 | 1.2:-62651971 | MS.gene062155:CDS |
GTTGCACCACGTGCGTTCAA+GGG | 0.578428 | 1.2:-62653469 | MS.gene062155:CDS |
TATCTTCAAGTGAACAGTAT+CGG | 0.578627 | 1.2:+62655989 | None:intergenic |
ATTGATACAGATGATCTTGG+AGG | 0.579531 | 1.2:+62653956 | None:intergenic |
GGAGAATGCAAACTTGGCAA+TGG | 0.580595 | 1.2:-62654392 | MS.gene062155:CDS |
TAGTCTTTATCCTCTTCCAA+TGG | 0.580945 | 1.2:+62655882 | None:intergenic |
TATTCATCGACCATTGGAAG+AGG | 0.581116 | 1.2:-62655892 | MS.gene062155:CDS |
CGATTTGCTCCACAATTCAG+TGG | 0.583237 | 1.2:-62653436 | MS.gene062155:CDS |
ATGTACATATGTCTCAATGT+TGG | 0.584427 | 1.2:+62650297 | None:intergenic |
AACCATTACGGTGGTTTAGG+TGG | 0.584463 | 1.2:-62649505 | MS.gene062155:CDS |
TTTCACCGGAGGAAGAGAAA+CGG | 0.585574 | 1.2:-62658940 | MS.gene062155:CDS |
TTCCTCAACAAGTATGGGAA+AGG | 0.585591 | 1.2:-62655851 | MS.gene062155:CDS |
TTACATTGAAATGAAGGACT+CGG | 0.585855 | 1.2:-62652009 | MS.gene062155:CDS |
TAGCTGTGAGCCCATTGACA+AGG | 0.586420 | 1.2:-62650062 | MS.gene062155:CDS |
TGTCATTGTCCGGGTGACAG+TGG | 0.589052 | 1.2:+62651550 | None:intergenic |
ACTGTGACTGTCCTGAAGCA+TGG | 0.592033 | 1.2:-62651482 | MS.gene062155:CDS |
GACGGCTTCAGACCAGACAT+TGG | 0.593889 | 1.2:-62654413 | MS.gene062155:CDS |
ATTCAGCAAGTGGTGGAGTG+TGG | 0.594255 | 1.2:+62653738 | None:intergenic |
TTGGAAAGATGACTCTCCAC+AGG | 0.597434 | 1.2:+62650111 | None:intergenic |
TAGGTACTGCCCTCAATGCA+AGG | 0.598022 | 1.2:-62649731 | MS.gene062155:CDS |
GGCTCCACTCTTGAGTCGAT+AGG | 0.599098 | 1.2:+62651205 | None:intergenic |
TTGTGTGCCGATTTCACCGG+AGG | 0.599322 | 1.2:-62658951 | MS.gene062155:CDS |
ACAGTCACAGTGTACGGCAT+GGG | 0.599364 | 1.2:+62651494 | None:intergenic |
AAATGAAGGACTCGGATGGT+AGG | 0.599838 | 1.2:-62652001 | MS.gene062155:CDS |
TTCTTCCAAATAAGTAACCA+AGG | 0.600475 | 1.2:+62650336 | None:intergenic |
ACTGACCAGCAATCTTCTGA+TGG | 0.604191 | 1.2:-62656020 | MS.gene062155:CDS |
CTACCAAGAAACTGGACTTG+TGG | 0.605316 | 1.2:-62649696 | MS.gene062155:CDS |
ACTTTGCACCAGAGAACAAG+AGG | 0.606165 | 1.2:-62650140 | MS.gene062155:CDS |
GCATTACACTGCATATGCTA+AGG | 0.606988 | 1.2:-62649479 | MS.gene062155:intron |
AGTTGATTGATGATAATAAG+TGG | 0.607365 | 1.2:-62649312 | MS.gene062155:CDS |
TCACAGTGAACCGAGGAACC+CGG | 0.607659 | 1.2:-62650164 | MS.gene062155:CDS |
CAATCACCTTTAGATTAAGT+GGG | 0.608336 | 1.2:+62655423 | None:intergenic |
TGAATGCACACCAGAATGAG+AGG | 0.609087 | 1.2:+62654012 | None:intergenic |
AAAGGTTATACACATAGGAT+GGG | 0.610075 | 1.2:+62649539 | None:intergenic |
TTACAATTGTCTAGGTACAA+AGG | 0.610376 | 1.2:-62655512 | MS.gene062155:intron |
ATGTTCACTGAACAGTGGGA+AGG | 0.611843 | 1.2:-62650386 | MS.gene062155:intron |
CGGGTGACAGTGGAAGGAAG+TGG | 0.612301 | 1.2:+62651560 | None:intergenic |
GACAGTCACAGTGTACGGCA+TGG | 0.613993 | 1.2:+62651493 | None:intergenic |
TGCATAAAGGTTATACACAT+AGG | 0.622320 | 1.2:+62649534 | None:intergenic |
TCAAATCCAGATTGTGAATG+GGG | 0.623330 | 1.2:+62649587 | None:intergenic |
GTGGCCTATCGACTCAAGAG+TGG | 0.623354 | 1.2:-62651209 | MS.gene062155:CDS |
AAGGTGGACCAGCATTGCCA+AGG | 0.624449 | 1.2:-62655493 | MS.gene062155:CDS |
ACACTAGTTTGTCCTGAATG+TGG | 0.624818 | 1.2:-62651626 | MS.gene062155:CDS |
ACAGTGGGAAGGGTGGAGAG+AGG | 0.626561 | 1.2:-62650375 | MS.gene062155:intron |
CACATGTCATCTGGTCCTAG+AGG | 0.629509 | 1.2:+62649851 | None:intergenic |
GGAAGAGAAACGGATCGTGA+AGG | 0.630973 | 1.2:-62658930 | MS.gene062155:CDS |
CTTCAACTAAGTCTCATGAA+GGG | 0.631995 | 1.2:-62650243 | MS.gene062155:CDS |
ATCATCTGTATCAATTGCAG+GGG | 0.637469 | 1.2:-62653948 | MS.gene062155:CDS |
ACCGAAGCAGTACAGCATTG+AGG | 0.637486 | 1.2:-62655450 | MS.gene062155:CDS |
TGGTTATAACCACTGAATTG+TGG | 0.641543 | 1.2:+62653427 | None:intergenic |
GAAACTGGTTTCATCTCAGG+TGG | 0.641699 | 1.2:-62650217 | MS.gene062155:CDS |
TCACTGAACAGTGGGAAGGG+TGG | 0.648017 | 1.2:-62650382 | MS.gene062155:intron |
TCTTCCAAATAAGTAACCAA+GGG | 0.649627 | 1.2:+62650337 | None:intergenic |
CTCTAGGACCAGATGACATG+TGG | 0.653845 | 1.2:-62649850 | MS.gene062155:intron |
GTCTATAGTGGTGAAAGAGG+TGG | 0.657063 | 1.2:-62653824 | MS.gene062155:CDS |
ATTGAAATGAAGGACTCGGA+TGG | 0.658538 | 1.2:-62652005 | MS.gene062155:CDS |
TAAAGGAGTAGAACAGCACA+AGG | 0.658863 | 1.2:-62654579 | MS.gene062155:intron |
GCAATCAGCAACCATTACGG+TGG | 0.659658 | 1.2:-62649514 | MS.gene062155:CDS |
TAGCTCATAGAGTTCACTCA+AGG | 0.664124 | 1.2:+62654613 | None:intergenic |
CAATTGTCTAGGTACAAAGG+TGG | 0.670376 | 1.2:-62655509 | MS.gene062155:intron |
TCAGAATTATCAATTGGACC+GGG | 0.676607 | 1.2:+62655957 | None:intergenic |
TGCAACAGCAGTTCGCCCAG+AGG | 0.677930 | 1.2:+62653486 | None:intergenic |
CTAATTCTCACAGTGAACCG+AGG | 0.686154 | 1.2:-62650171 | MS.gene062155:CDS |
TTCTTGACCGAAGAACCTCT+AGG | 0.686595 | 1.2:-62649866 | MS.gene062155:CDS |
CTTTGCACCAGAGAACAAGA+GGG | 0.690692 | 1.2:-62650139 | MS.gene062155:CDS |
GAGTGACCATTAGACAAGGT+AGG | 0.713316 | 1.2:+62653923 | None:intergenic |
TTACAGCGATGAGATCAACA+TGG | 0.715649 | 1.2:-62653702 | MS.gene062155:CDS |
TCATCTGTATCAATTGCAGG+GGG | 0.722106 | 1.2:-62653947 | MS.gene062155:CDS |
GTGAATGGGGAAGTTCACAA+AGG | 0.723784 | 1.2:+62649600 | None:intergenic |
TTGAAGATAACTGATAGACC+CGG | 0.726861 | 1.2:-62655975 | MS.gene062155:CDS |
TTTGCACCAGAGAACAAGAG+GGG | 0.735618 | 1.2:-62650138 | MS.gene062155:CDS |
ACTTGAGTGACCATTAGACA+AGG | 0.740534 | 1.2:+62653919 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 62649165 | 62659017 | 62649165 | ID=MS.gene062155 |
chr1.2 | mRNA | 62649165 | 62659017 | 62649165 | ID=MS.gene062155.t1;Parent=MS.gene062155 |
chr1.2 | exon | 62658866 | 62659017 | 62658866 | ID=MS.gene062155.t1.exon1;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62658866 | 62659017 | 62658866 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62655840 | 62656094 | 62655840 | ID=MS.gene062155.t1.exon2;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62655840 | 62656094 | 62655840 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62655379 | 62655520 | 62655379 | ID=MS.gene062155.t1.exon3;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62655379 | 62655520 | 62655379 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62654580 | 62654639 | 62654580 | ID=MS.gene062155.t1.exon4;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62654580 | 62654639 | 62654580 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62654384 | 62654479 | 62654384 | ID=MS.gene062155.t1.exon5;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62654384 | 62654479 | 62654384 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62653682 | 62654068 | 62653682 | ID=MS.gene062155.t1.exon6;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62653682 | 62654068 | 62653682 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62653414 | 62653554 | 62653414 | ID=MS.gene062155.t1.exon7;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62653414 | 62653554 | 62653414 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62651923 | 62652093 | 62651923 | ID=MS.gene062155.t1.exon8;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62651923 | 62652093 | 62651923 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62651406 | 62651663 | 62651406 | ID=MS.gene062155.t1.exon9;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62651406 | 62651663 | 62651406 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62651164 | 62651309 | 62651164 | ID=MS.gene062155.t1.exon10;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62651164 | 62651309 | 62651164 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62649851 | 62650393 | 62649851 | ID=MS.gene062155.t1.exon11;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62649851 | 62650393 | 62649851 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62649480 | 62649750 | 62649480 | ID=MS.gene062155.t1.exon12;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62649480 | 62649750 | 62649480 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
chr1.2 | exon | 62649165 | 62649332 | 62649165 | ID=MS.gene062155.t1.exon13;Parent=MS.gene062155.t1 |
chr1.2 | CDS | 62649165 | 62649332 | 62649165 | ID=cds.MS.gene062155.t1;Parent=MS.gene062155.t1 |
Gene Sequence |
Protein sequence |