Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014028.t1 | KEH23600.1 | 80.7 | 332 | 57 | 2 | 1 | 332 | 1 | 325 | 6.20E-152 | 547 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014028.t1 | Q4V3D9 | 55.8 | 369 | 118 | 2 | 9 | 332 | 6 | 374 | 8.8e-115 | 414.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014028.t1 | A0A072UCL7 | 80.7 | 332 | 57 | 2 | 1 | 332 | 1 | 325 | 4.5e-152 | 547.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059296 | MS.gene014028 | PPI |
| MS.gene66625 | MS.gene014028 | PPI |
| MS.gene014028 | MS.gene35719 | PPI |
| MS.gene061292 | MS.gene014028 | PPI |
| MS.gene014028 | MS.gene61630 | PPI |
| MS.gene034366 | MS.gene014028 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014028.t1 | MTR_7g490330 | 80.723 | 332 | 57 | 2 | 1 | 332 | 1 | 325 | 0.0 | 548 |
| MS.gene014028.t1 | MTR_7g090300 | 71.622 | 370 | 66 | 2 | 1 | 332 | 1 | 369 | 0.0 | 526 |
| MS.gene014028.t1 | MTR_7g490350 | 71.351 | 370 | 67 | 2 | 1 | 332 | 1 | 369 | 0.0 | 525 |
| MS.gene014028.t1 | MTR_5g091980 | 78.012 | 332 | 64 | 2 | 1 | 332 | 1 | 323 | 0.0 | 518 |
| MS.gene014028.t1 | MTR_2g087780 | 50.000 | 352 | 125 | 5 | 29 | 332 | 47 | 395 | 6.17e-110 | 326 |
| MS.gene014028.t1 | MTR_4g050190 | 49.408 | 338 | 122 | 5 | 41 | 332 | 57 | 391 | 6.39e-106 | 315 |
| MS.gene014028.t1 | MTR_2g099030 | 49.074 | 324 | 117 | 4 | 51 | 327 | 79 | 401 | 2.45e-100 | 301 |
| MS.gene014028.t1 | MTR_7g090310 | 41.867 | 375 | 163 | 6 | 12 | 331 | 11 | 385 | 2.08e-98 | 296 |
| MS.gene014028.t1 | MTR_7g090320 | 45.921 | 331 | 128 | 4 | 52 | 331 | 56 | 386 | 2.91e-98 | 296 |
| MS.gene014028.t1 | MTR_4g112670 | 42.857 | 301 | 151 | 3 | 50 | 330 | 35 | 334 | 1.02e-79 | 246 |
| MS.gene014028.t1 | MTR_4g112630 | 43.103 | 290 | 153 | 4 | 53 | 331 | 37 | 325 | 2.67e-76 | 237 |
| MS.gene014028.t1 | MTR_4g112650 | 39.826 | 344 | 171 | 6 | 3 | 326 | 2 | 329 | 3.85e-75 | 234 |
| MS.gene014028.t1 | MTR_2g058450 | 42.140 | 299 | 153 | 5 | 53 | 332 | 39 | 336 | 5.07e-69 | 219 |
| MS.gene014028.t1 | MTR_4g112620 | 37.931 | 290 | 137 | 4 | 54 | 331 | 42 | 300 | 2.22e-57 | 188 |
| MS.gene014028.t1 | MTR_2g058410 | 39.130 | 230 | 125 | 2 | 115 | 329 | 1 | 230 | 7.95e-45 | 153 |
| MS.gene014028.t1 | MTR_0003s0530 | 39.560 | 182 | 94 | 1 | 159 | 324 | 2 | 183 | 8.64e-39 | 137 |
| MS.gene014028.t1 | MTR_8g074210 | 35.776 | 232 | 128 | 4 | 51 | 282 | 75 | 285 | 2.43e-37 | 137 |
| MS.gene014028.t1 | MTR_8g074270 | 37.118 | 229 | 123 | 5 | 54 | 282 | 78 | 285 | 4.16e-37 | 137 |
| MS.gene014028.t1 | MTR_8g074170 | 37.229 | 231 | 120 | 7 | 54 | 282 | 78 | 285 | 9.67e-36 | 133 |
| MS.gene014028.t1 | MTR_2g042370 | 28.889 | 315 | 165 | 8 | 55 | 332 | 65 | 357 | 7.43e-27 | 108 |
| MS.gene014028.t1 | MTR_2g042420 | 26.757 | 370 | 210 | 9 | 1 | 332 | 3 | 349 | 2.50e-26 | 107 |
| MS.gene014028.t1 | MTR_1g075865 | 41.509 | 106 | 61 | 1 | 163 | 268 | 7 | 111 | 2.45e-24 | 96.7 |
| MS.gene014028.t1 | MTR_2g042430 | 27.653 | 311 | 165 | 8 | 55 | 328 | 77 | 364 | 1.03e-23 | 100 |
| MS.gene014028.t1 | MTR_4g112840 | 47.778 | 90 | 47 | 0 | 192 | 281 | 63 | 152 | 1.04e-22 | 93.2 |
| MS.gene014028.t1 | MTR_8g074320 | 40.152 | 132 | 74 | 3 | 109 | 237 | 92 | 221 | 1.60e-19 | 86.3 |
| MS.gene014028.t1 | MTR_2g058430 | 41.237 | 97 | 55 | 1 | 106 | 200 | 52 | 148 | 7.48e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014028.t1 | AT3G57030 | 55.645 | 372 | 120 | 3 | 6 | 332 | 3 | 374 | 2.06e-145 | 415 |
| MS.gene014028.t1 | AT1G08470 | 49.704 | 338 | 120 | 5 | 41 | 332 | 56 | 389 | 4.02e-106 | 316 |
| MS.gene014028.t1 | AT5G22020 | 48.387 | 341 | 128 | 4 | 37 | 332 | 58 | 395 | 1.47e-105 | 315 |
| MS.gene014028.t1 | AT5G22020 | 48.387 | 341 | 128 | 4 | 37 | 332 | 58 | 395 | 1.47e-105 | 315 |
| MS.gene014028.t1 | AT5G22020 | 48.387 | 341 | 128 | 4 | 37 | 332 | 58 | 395 | 1.47e-105 | 315 |
| MS.gene014028.t1 | AT2G41290 | 46.726 | 336 | 130 | 6 | 45 | 332 | 42 | 376 | 1.67e-93 | 283 |
| MS.gene014028.t1 | AT3G57020 | 43.417 | 357 | 156 | 6 | 14 | 329 | 15 | 366 | 2.35e-92 | 280 |
| MS.gene014028.t1 | AT3G57010 | 42.663 | 368 | 166 | 5 | 3 | 329 | 4 | 367 | 1.55e-91 | 278 |
| MS.gene014028.t1 | AT3G59530 | 45.732 | 328 | 119 | 5 | 49 | 329 | 79 | 394 | 1.19e-90 | 276 |
| MS.gene014028.t1 | AT3G59530 | 45.732 | 328 | 119 | 5 | 49 | 329 | 79 | 394 | 1.19e-90 | 276 |
| MS.gene014028.t1 | AT3G59530 | 45.732 | 328 | 119 | 5 | 49 | 329 | 79 | 394 | 1.19e-90 | 276 |
| MS.gene014028.t1 | AT2G41300 | 46.774 | 310 | 122 | 3 | 60 | 329 | 84 | 390 | 1.65e-88 | 271 |
| MS.gene014028.t1 | AT3G57020 | 42.297 | 357 | 146 | 6 | 14 | 329 | 15 | 352 | 3.51e-86 | 264 |
| MS.gene014028.t1 | AT1G74020 | 42.662 | 293 | 151 | 6 | 54 | 332 | 38 | 327 | 8.71e-70 | 221 |
| MS.gene014028.t1 | AT1G74010 | 42.568 | 296 | 152 | 7 | 51 | 332 | 34 | 325 | 6.64e-68 | 216 |
| MS.gene014028.t1 | AT1G74000 | 40.476 | 294 | 158 | 6 | 53 | 332 | 39 | 329 | 7.91e-64 | 205 |
| MS.gene014028.t1 | AT3G51440 | 34.413 | 247 | 142 | 6 | 41 | 286 | 56 | 283 | 9.89e-31 | 119 |
| MS.gene014028.t1 | AT3G51430 | 32.271 | 251 | 150 | 6 | 37 | 286 | 52 | 283 | 7.49e-29 | 114 |
| MS.gene014028.t1 | AT3G51450 | 33.047 | 233 | 136 | 7 | 55 | 286 | 70 | 283 | 2.26e-28 | 113 |
| MS.gene014028.t1 | AT3G51430 | 31.325 | 249 | 151 | 6 | 37 | 284 | 52 | 281 | 3.00e-28 | 113 |
| MS.gene014028.t1 | AT3G51420 | 31.818 | 242 | 145 | 6 | 41 | 281 | 56 | 278 | 1.18e-27 | 111 |
Find 85 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTCACTGATGTTCTTCA+TGG | 0.198711 | 7.2:+18390126 | None:intergenic |
| GAAATTCAAATGGGCAGTTT+TGG | 0.232638 | 7.2:-18390228 | MS.gene014028:CDS |
| TATATTGGTGTTTATAGTTT+AGG | 0.238782 | 7.2:-18390058 | MS.gene014028:CDS |
| CTCAATGTAGTGGGACCTAC+TGG | 0.241265 | 7.2:-18391221 | MS.gene014028:CDS |
| AATATTCTTGTACTTCTTAG+TGG | 0.314755 | 7.2:-18390478 | MS.gene014028:CDS |
| AGGGAAAATATTAGAAATCT+TGG | 0.328667 | 7.2:-18390167 | MS.gene014028:CDS |
| TTGCTTAAAGCAACACCATT+AGG | 0.331103 | 7.2:+18390379 | None:intergenic |
| GTATTGACTTTGCCAGCTTT+TGG | 0.331769 | 7.2:+18390289 | None:intergenic |
| GCGGGAGGCCACTAGGACTA+AGG | 0.337333 | 7.2:-18391292 | MS.gene014028:CDS |
| ACTGCAGAATTCTTCGGCTT+TGG | 0.342556 | 7.2:-18390321 | MS.gene014028:CDS |
| TATTAGAAATCTTGGGAGAT+TGG | 0.345041 | 7.2:-18390159 | MS.gene014028:CDS |
| AAACTATAAACACCAATATA+AGG | 0.351153 | 7.2:+18390061 | None:intergenic |
| TTGCTGTCACGAGTTCTAAT+AGG | 0.352873 | 7.2:-18392267 | MS.gene014028:intron |
| CTTCTTAGTGGAGACGCAAC+TGG | 0.367623 | 7.2:-18390466 | MS.gene014028:CDS |
| ACTCTCCGGTCCGACGGCTT+TGG | 0.383656 | 7.2:+18392384 | None:intergenic |
| AAGAGAGAAATGGAAAACTT+TGG | 0.411409 | 7.2:-18390102 | MS.gene014028:CDS |
| ATTCTTCGGCTTTGGCTTCG+TGG | 0.418524 | 7.2:-18390313 | MS.gene014028:CDS |
| TCAATGTAGTGGGACCTACT+GGG | 0.421424 | 7.2:-18391220 | MS.gene014028:CDS |
| CTTTCACTTCACCAATGACT+TGG | 0.432489 | 7.2:-18391156 | MS.gene014028:CDS |
| CTTATATTGTCGGGAAAACC+TGG | 0.434775 | 7.2:+18390253 | None:intergenic |
| TGAATTTCTCCTTATATTGT+CGG | 0.438415 | 7.2:+18390243 | None:intergenic |
| CCTCGAACTGCAGAATTCTT+CGG | 0.438961 | 7.2:-18390327 | MS.gene014028:CDS |
| CCGCAAATATGCTCTAACTT+TGG | 0.444704 | 7.2:+18391311 | None:intergenic |
| CAAAGTTAGAGCATATTTGC+GGG | 0.456089 | 7.2:-18391310 | MS.gene014028:CDS |
| GAATTTCTCCTTATATTGTC+GGG | 0.456126 | 7.2:+18390244 | None:intergenic |
| GGTGTTGCTTTAAGCAAAGA+TGG | 0.456261 | 7.2:-18390373 | MS.gene014028:CDS |
| TTCACTGATATCCAAGTCAT+TGG | 0.463204 | 7.2:+18391145 | None:intergenic |
| TGGCTTCGTGGACCAAAAGC+TGG | 0.463403 | 7.2:-18390301 | MS.gene014028:CDS |
| AGTGAAGTGGAAGAGAGAAA+TGG | 0.469053 | 7.2:-18390112 | MS.gene014028:CDS |
| GGGAAAATATTAGAAATCTT+GGG | 0.469300 | 7.2:-18390166 | MS.gene014028:CDS |
| TATATTGCTGATGCTTACCT+TGG | 0.473507 | 7.2:-18391245 | MS.gene014028:CDS |
| GCATGAGAAGAGTGCTAGAA+AGG | 0.478094 | 7.2:+18392501 | None:intergenic |
| AATATAAGGAGAAATTCAAA+TGG | 0.478511 | 7.2:-18390238 | MS.gene014028:CDS |
| TGCTCTAACTTTGGTGCGAA+TGG | 0.480454 | 7.2:+18391320 | None:intergenic |
| CCGAAGAATTCTGCAGTTCG+AGG | 0.480808 | 7.2:+18390327 | None:intergenic |
| CATATTTGCGGGAGGCCACT+AGG | 0.483919 | 7.2:-18391299 | MS.gene014028:CDS |
| TTTGATCCAGCAATGTGAAC+AGG | 0.486477 | 7.2:+18392442 | None:intergenic |
| CCATCCGCCACGCCGGTGTA+CGG | 0.487653 | 7.2:+18392334 | None:intergenic |
| TACTACATTGAGGATGTCCT+TGG | 0.488098 | 7.2:+18392525 | None:intergenic |
| GCTATAAAGCTGAGTGGTGA+AGG | 0.488363 | 7.2:-18390187 | MS.gene014028:CDS |
| CAAGTCATTGGTGAAGTGAA+AGG | 0.495058 | 7.2:+18391157 | None:intergenic |
| CCGTACACCGGCGTGGCGGA+TGG | 0.496328 | 7.2:-18392334 | MS.gene014028:CDS |
| TCAGTGGAAATGCCTTATAT+TGG | 0.502261 | 7.2:-18390073 | MS.gene014028:CDS |
| AAAACTTTGGATTGCATCAG+TGG | 0.505405 | 7.2:-18390089 | MS.gene014028:CDS |
| AGCTTCTATTGCTAGTTGAG+TGG | 0.511069 | 7.2:+18391190 | None:intergenic |
| AAGTGGGAGGGGAAGGAACG+TGG | 0.523034 | 7.2:-18392301 | MS.gene014028:CDS |
| CAATGTAGTGGGACCTACTG+GGG | 0.524671 | 7.2:-18391219 | MS.gene014028:CDS |
| CCAAAGTTAGAGCATATTTG+CGG | 0.526459 | 7.2:-18391311 | MS.gene014028:CDS |
| GAAGTGAAGGTCTTGTTAAG+AGG | 0.528733 | 7.2:-18390412 | MS.gene014028:CDS |
| AAGTCATTGGTGAAGTGAAA+GGG | 0.530724 | 7.2:+18391158 | None:intergenic |
| TGTTCACATTGCTGGATCAA+AGG | 0.537126 | 7.2:-18392440 | MS.gene014028:CDS |
| TACCTTGGCCTCAATGTAGT+GGG | 0.537777 | 7.2:-18391230 | MS.gene014028:CDS |
| GTCCGACGGCTTTGGTGACG+TGG | 0.539978 | 7.2:+18392392 | None:intergenic |
| TTATCAAACCTTAGTCCTAG+TGG | 0.561618 | 7.2:+18391284 | None:intergenic |
| CAATGTGAACAGGTGAAAAG+AGG | 0.562529 | 7.2:+18392452 | None:intergenic |
| CGTCACCAAAGCCGTCGGAC+CGG | 0.562729 | 7.2:-18392389 | MS.gene014028:CDS |
| GTCCCACTACATTGAGGCCA+AGG | 0.562852 | 7.2:+18391228 | None:intergenic |
| GGGAGGGGAAGGAACGTGGT+TGG | 0.562863 | 7.2:-18392297 | MS.gene014028:CDS |
| CATGGTGAGGGTCCGTACAC+CGG | 0.564118 | 7.2:-18392346 | MS.gene014028:CDS |
| CATGAAGAACATCAGTGAAG+TGG | 0.569248 | 7.2:-18390125 | MS.gene014028:CDS |
| GAAATCTTGGGAGATTGGCA+AGG | 0.571629 | 7.2:-18390154 | MS.gene014028:CDS |
| TAAGTCAACAAAAGAAGTGA+AGG | 0.571883 | 7.2:-18390425 | MS.gene014028:CDS |
| TTATCGAAAACAAGACTCTC+CGG | 0.573402 | 7.2:+18392370 | None:intergenic |
| ATATAAGGAGAAATTCAAAT+GGG | 0.580818 | 7.2:-18390237 | MS.gene014028:CDS |
| TTCTTAGTGGAGACGCAACT+GGG | 0.583966 | 7.2:-18390465 | MS.gene014028:CDS |
| ACACCGGCGTGGCGGATGGT+CGG | 0.585681 | 7.2:-18392330 | MS.gene014028:CDS |
| CAAGCACAGTCTATCAGAGA+AGG | 0.594605 | 7.2:-18391094 | MS.gene014028:intron |
| TTACCTTGGCCTCAATGTAG+TGG | 0.599466 | 7.2:-18391231 | MS.gene014028:CDS |
| AATGTAGTGGGACCTACTGG+GGG | 0.601063 | 7.2:-18391218 | MS.gene014028:CDS |
| AAATCTTGGGAGATTGGCAA+GGG | 0.602246 | 7.2:-18390153 | MS.gene014028:CDS |
| CTAGAAAGGTTACTACATTG+AGG | 0.603481 | 7.2:+18392515 | None:intergenic |
| AATCCGACCATCCGCCACGC+CGG | 0.605536 | 7.2:+18392327 | None:intergenic |
| CAACTAGCAATAGAAGCTGA+AGG | 0.619883 | 7.2:-18391185 | MS.gene014028:CDS |
| AACAAGACTCTCCGGTCCGA+CGG | 0.620082 | 7.2:+18392378 | None:intergenic |
| CAGTAGGTCCCACTACATTG+AGG | 0.626504 | 7.2:+18391222 | None:intergenic |
| CTATAAAGCTGAGTGGTGAA+GGG | 0.627218 | 7.2:-18390186 | MS.gene014028:CDS |
| CGTGGAGTATCTGAGCAGCA+TGG | 0.630959 | 7.2:+18392410 | None:intergenic |
| TATCATAAACATGAACTCCA+AGG | 0.639632 | 7.2:-18392542 | None:intergenic |
| CTCCACGTCACCAAAGCCGT+CGG | 0.656986 | 7.2:-18392394 | MS.gene014028:CDS |
| AGTTAGAGCATATTTGCGGG+AGG | 0.660243 | 7.2:-18391307 | MS.gene014028:CDS |
| TTGGATATCAGTGAAGATGA+AGG | 0.668380 | 7.2:-18391137 | MS.gene014028:CDS |
| GGGTCCGTACACCGGCGTGG+CGG | 0.673340 | 7.2:-18392338 | MS.gene014028:CDS |
| TGAGGGTCCGTACACCGGCG+TGG | 0.683753 | 7.2:-18392341 | MS.gene014028:CDS |
| GGAGTATCTGAGCAGCATGG+AGG | 0.725901 | 7.2:+18392413 | None:intergenic |
| TCAGCAGCTATAAAGCTGAG+TGG | 0.731970 | 7.2:-18390193 | MS.gene014028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAACATATATATTTTTAA+GGG | - | chr7.2:18391651-18391670 | MS.gene014028:intron | 10.0% |
| !!! | TTTCTTTATTACTATTTTTT+TGG | - | chr7.2:18390379-18390398 | MS.gene014028:CDS | 10.0% |
| !! | ATAGGTATAGATATATTTAA+GGG | + | chr7.2:18390687-18390706 | None:intergenic | 15.0% |
| !! | TGATAAATAATCTCAATTAA+TGG | - | chr7.2:18391098-18391117 | MS.gene014028:CDS | 15.0% |
| !! | TTATGAAAACGATTTATATA+TGG | + | chr7.2:18390740-18390759 | None:intergenic | 15.0% |
| !!! | CTTCAACATATATATTTTTA+AGG | - | chr7.2:18391650-18391669 | MS.gene014028:intron | 15.0% |
| !! | AAACTATAAACACCAATATA+AGG | + | chr7.2:18392525-18392544 | None:intergenic | 20.0% |
| !! | AAATATAAGTATGAGTTAGA+TGG | + | chr7.2:18391182-18391201 | None:intergenic | 20.0% |
| !! | AATAGAGTTAATTGTAGAAA+AGG | + | chr7.2:18391539-18391558 | None:intergenic | 20.0% |
| !! | AATATAAGGAGAAATTCAAA+TGG | - | chr7.2:18392345-18392364 | MS.gene014028:CDS | 20.0% |
| !! | ATATAAGGAGAAATTCAAAT+GGG | - | chr7.2:18392346-18392365 | MS.gene014028:CDS | 20.0% |
| !! | CATAGGTATAGATATATTTA+AGG | + | chr7.2:18390688-18390707 | None:intergenic | 20.0% |
| !! | CTAAAAATTTGTATTTCACA+AGG | + | chr7.2:18391799-18391818 | None:intergenic | 20.0% |
| !! | CTTAAATTAGTCAATCTAAA+CGG | - | chr7.2:18390866-18390885 | MS.gene014028:intron | 20.0% |
| !! | GTACTACTAACAATATATAT+TGG | - | chr7.2:18391733-18391752 | MS.gene014028:intron | 20.0% |
| !! | TACAAAATCCTTCTAATTTA+AGG | + | chr7.2:18391825-18391844 | None:intergenic | 20.0% |
| !! | TTAAATTAGTCAATCTAAAC+GGG | - | chr7.2:18390867-18390886 | MS.gene014028:intron | 20.0% |
| !!! | ATATTTTTAAGGGTATGATT+GGG | - | chr7.2:18391661-18391680 | MS.gene014028:intron | 20.0% |
| !!! | TATATTGGTGTTTATAGTTT+AGG | - | chr7.2:18392525-18392544 | MS.gene014028:CDS | 20.0% |
| !!! | TATATTTTTAAGGGTATGAT+TGG | - | chr7.2:18391660-18391679 | MS.gene014028:intron | 20.0% |
| !!! | TCTTTTTATATGGCATATTA+TGG | + | chr7.2:18392037-18392056 | None:intergenic | 20.0% |
| !!! | TGCTTTTAAGTTATTTTCAT+AGG | + | chr7.2:18390705-18390724 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCCTTAAATTAGA+AGG | - | chr7.2:18391814-18391833 | MS.gene014028:intron | 20.0% |
| ! | AATAACTTAAAAGCAGCTTA+TGG | - | chr7.2:18390710-18390729 | MS.gene014028:intron | 25.0% |
| ! | AATATTCTTGTACTTCTTAG+TGG | - | chr7.2:18392105-18392124 | MS.gene014028:intron | 25.0% |
| ! | AGGGAAAATATTAGAAATCT+TGG | - | chr7.2:18392416-18392435 | MS.gene014028:CDS | 25.0% |
| ! | CATATAAAAAGAATGAGTGA+TGG | - | chr7.2:18392045-18392064 | MS.gene014028:intron | 25.0% |
| ! | CTAAGGTTTGATAAGAAAAA+TGG | - | chr7.2:18391308-18391327 | MS.gene014028:CDS | 25.0% |
| ! | CTTAAAACAGATAGAAAGTT+AGG | + | chr7.2:18391004-18391023 | None:intergenic | 25.0% |
| ! | GAAGAAGTAAATGAAAAGAA+TGG | + | chr7.2:18391881-18391900 | None:intergenic | 25.0% |
| ! | GGGAAAATATTAGAAATCTT+GGG | - | chr7.2:18392417-18392436 | MS.gene014028:CDS | 25.0% |
| ! | TAGGTAATAGTAATACCATT+TGG | - | chr7.2:18390335-18390354 | MS.gene014028:CDS | 25.0% |
| ! | TGAATTTCTCCTTATATTGT+CGG | + | chr7.2:18392343-18392362 | None:intergenic | 25.0% |
| ! | TGATGGAATGATTTATATGT+TGG | - | chr7.2:18392062-18392081 | MS.gene014028:intron | 25.0% |
| ! | TTGGATTTGAAGATTTATCT+CGG | - | chr7.2:18391752-18391771 | MS.gene014028:intron | 25.0% |
| ! | TTTACGAAATATGCATGAAA+AGG | - | chr7.2:18391606-18391625 | MS.gene014028:intron | 25.0% |
| !! | CATCACTCATTCTTTTTATA+TGG | + | chr7.2:18392047-18392066 | None:intergenic | 25.0% |
| !! | TAAGTAAGTCTTTTAAGCAT+GGG | - | chr7.2:18390609-18390628 | MS.gene014028:intron | 25.0% |
| !!! | GATTAGTTGTATGATTTTCA+AGG | - | chr7.2:18391225-18391244 | MS.gene014028:CDS | 25.0% |
| !!! | GTTTTAAGACATTGATAAAC+TGG | - | chr7.2:18391016-18391035 | MS.gene014028:intron | 25.0% |
| AAGAGAGAAATGGAAAACTT+TGG | - | chr7.2:18392481-18392500 | MS.gene014028:CDS | 30.0% | |
| AGAGTTAATTGTAGAAAAGG+AGG | + | chr7.2:18391536-18391555 | None:intergenic | 30.0% | |
| CATGCATATTTGATATGTTG+GGG | - | chr7.2:18390494-18390513 | MS.gene014028:intron | 30.0% | |
| GAATTTCTCCTTATATTGTC+GGG | + | chr7.2:18392342-18392361 | None:intergenic | 30.0% | |
| GCATGCATATTTGATATGTT+GGG | - | chr7.2:18390493-18390512 | MS.gene014028:intron | 30.0% | |
| TAAGTCAACAAAAGAAGTGA+AGG | - | chr7.2:18392158-18392177 | MS.gene014028:intron | 30.0% | |
| TAATTGTAGAAAAGGAGGTA+AGG | + | chr7.2:18391531-18391550 | None:intergenic | 30.0% | |
| TATTAGAAATCTTGGGAGAT+TGG | - | chr7.2:18392424-18392443 | MS.gene014028:CDS | 30.0% | |
| TGCATGCATATTTGATATGT+TGG | - | chr7.2:18390492-18390511 | MS.gene014028:intron | 30.0% | |
| TTGCTAAACTAGTAGAAGTA+AGG | - | chr7.2:18390575-18390594 | MS.gene014028:intron | 30.0% | |
| ! | AAATTCAAATGGGCAGTTTT+GGG | - | chr7.2:18392356-18392375 | MS.gene014028:CDS | 30.0% |
| ! | AAGTAAGTCTTTTAAGCATG+GGG | - | chr7.2:18390610-18390629 | MS.gene014028:intron | 30.0% |
| ! | ATCGTTTTCATAAGCTATTG+TGG | - | chr7.2:18390747-18390766 | MS.gene014028:intron | 30.0% |
| ! | CTAAGTAAGTCTTTTAAGCA+TGG | - | chr7.2:18390608-18390627 | MS.gene014028:intron | 30.0% |
| !!! | AGTCTTGTTTTCGATAAACA+TGG | - | chr7.2:18390219-18390238 | MS.gene014028:CDS | 30.0% |
| !!! | TTAATGGCTATTTTTTTCCG+AGG | - | chr7.2:18391114-18391133 | MS.gene014028:CDS | 30.0% |
| AAAACTTTGGATTGCATCAG+TGG | - | chr7.2:18392494-18392513 | MS.gene014028:CDS | 35.0% | |
| AAGCATGGGGTCTTAAAAAT+CGG | - | chr7.2:18390623-18390642 | MS.gene014028:intron | 35.0% | |
| AAGTCATTGGTGAAGTGAAA+GGG | + | chr7.2:18391428-18391447 | None:intergenic | 35.0% | |
| CAAAGTTAGAGCATATTTGC+GGG | - | chr7.2:18391273-18391292 | MS.gene014028:CDS | 35.0% | |
| CAACACTAAATACGAAGAAG+TGG | + | chr7.2:18390546-18390565 | None:intergenic | 35.0% | |
| CCAAAGTTAGAGCATATTTG+CGG | - | chr7.2:18391272-18391291 | MS.gene014028:CDS | 35.0% | |
| CTAGAAAGGTTACTACATTG+AGG | + | chr7.2:18390071-18390090 | None:intergenic | 35.0% | |
| CTAGTAGAAGTAAGGTTTGT+AGG | - | chr7.2:18390583-18390602 | MS.gene014028:intron | 35.0% | |
| TAGAGTCTGTTCAAGAGTTT+AGG | + | chr7.2:18391935-18391954 | None:intergenic | 35.0% | |
| TATATTGCTGATGCTTACCT+TGG | - | chr7.2:18391338-18391357 | MS.gene014028:CDS | 35.0% | |
| TCAGTGGAAATGCCTTATAT+TGG | - | chr7.2:18392510-18392529 | MS.gene014028:CDS | 35.0% | |
| TGAAACGTGAAAACACCAAA+TGG | + | chr7.2:18390353-18390372 | None:intergenic | 35.0% | |
| TTATCAAACCTTAGTCCTAG+TGG | + | chr7.2:18391302-18391321 | None:intergenic | 35.0% | |
| TTATCGAAAACAAGACTCTC+CGG | + | chr7.2:18390216-18390235 | None:intergenic | 35.0% | |
| TTCACTGATATCCAAGTCAT+TGG | + | chr7.2:18391441-18391460 | None:intergenic | 35.0% | |
| TTGCTTAAAGCAACACCATT+AGG | + | chr7.2:18392207-18392226 | None:intergenic | 35.0% | |
| TTGGATATCAGTGAAGATGA+AGG | - | chr7.2:18391446-18391465 | MS.gene014028:intron | 35.0% | |
| ! | AACCTTGTTGTACATATCCT+CGG | + | chr7.2:18391134-18391153 | None:intergenic | 35.0% |
| ! | AATACTTTTGCTGATCTTCC+AGG | - | chr7.2:18392312-18392331 | MS.gene014028:CDS | 35.0% |
| ! | CCTTATTCTAAAAGGCAAGA+GGG | - | chr7.2:18390891-18390910 | MS.gene014028:intron | 35.0% |
| ! | CTGAAACCGTTTGAAACTAA+AGG | + | chr7.2:18390950-18390969 | None:intergenic | 35.0% |
| ! | GAAATTCAAATGGGCAGTTT+TGG | - | chr7.2:18392355-18392374 | MS.gene014028:CDS | 35.0% |
| ! | GTTTTCGATAAACATGGTGA+GGG | - | chr7.2:18390225-18390244 | MS.gene014028:CDS | 35.0% |
| ! | TCTCTGCCTTTAGTTTCAAA+CGG | - | chr7.2:18390941-18390960 | MS.gene014028:intron | 35.0% |
| ! | TGTTTTCGATAAACATGGTG+AGG | - | chr7.2:18390224-18390243 | MS.gene014028:CDS | 35.0% |
| !! | TTGTATGATTTTCAAGGTCG+AGG | - | chr7.2:18391231-18391250 | MS.gene014028:CDS | 35.0% |
| !!! | CCTCTTGCCTTTTAGAATAA+GGG | + | chr7.2:18390893-18390912 | None:intergenic | 35.0% |
| AAACGGGCCCTTATTCTAAA+AGG | - | chr7.2:18390883-18390902 | MS.gene014028:intron | 40.0% | |
| AAATCTTGGGAGATTGGCAA+GGG | - | chr7.2:18392430-18392449 | MS.gene014028:CDS | 40.0% | |
| AAGAAGTGGTCGATGAATTG+AGG | + | chr7.2:18390532-18390551 | None:intergenic | 40.0% | |
| AGCTTCTATTGCTAGTTGAG+TGG | + | chr7.2:18391396-18391415 | None:intergenic | 40.0% | |
| AGTCTGTTCAAGAGTTTAGG+AGG | + | chr7.2:18391932-18391951 | None:intergenic | 40.0% | |
| AGTGAAGTGGAAGAGAGAAA+TGG | - | chr7.2:18392471-18392490 | MS.gene014028:CDS | 40.0% | |
| CAACTAGCAATAGAAGCTGA+AGG | - | chr7.2:18391398-18391417 | MS.gene014028:intron | 40.0% | |
| CAAGTCATTGGTGAAGTGAA+AGG | + | chr7.2:18391429-18391448 | None:intergenic | 40.0% | |
| CAATGTGAACAGGTGAAAAG+AGG | + | chr7.2:18390134-18390153 | None:intergenic | 40.0% | |
| CACTTCACTGATGTTCTTCA+TGG | + | chr7.2:18392460-18392479 | None:intergenic | 40.0% | |
| CATGAAGAACATCAGTGAAG+TGG | - | chr7.2:18392458-18392477 | MS.gene014028:CDS | 40.0% | |
| CATGCAGTTTAACACTTTCG+AGG | + | chr7.2:18390478-18390497 | None:intergenic | 40.0% | |
| CCGCAAATATGCTCTAACTT+TGG | + | chr7.2:18391275-18391294 | None:intergenic | 40.0% | |
| CTATAAAGCTGAGTGGTGAA+GGG | - | chr7.2:18392397-18392416 | MS.gene014028:CDS | 40.0% | |
| CTTATATTGTCGGGAAAACC+TGG | + | chr7.2:18392333-18392352 | None:intergenic | 40.0% | |
| CTTTCACTTCACCAATGACT+TGG | - | chr7.2:18391427-18391446 | MS.gene014028:intron | 40.0% | |
| GTCTGTTCAAGAGTTTAGGA+GGG | + | chr7.2:18391931-18391950 | None:intergenic | 40.0% | |
| TACTACATTGAGGATGTCCT+TGG | + | chr7.2:18390061-18390080 | None:intergenic | 40.0% | |
| TCTGTTCAAGAGTTTAGGAG+GGG | + | chr7.2:18391930-18391949 | None:intergenic | 40.0% | |
| TGTTCACATTGCTGGATCAA+AGG | - | chr7.2:18390143-18390162 | MS.gene014028:CDS | 40.0% | |
| TTCCGAGGATATGTACAACA+AGG | - | chr7.2:18391129-18391148 | MS.gene014028:CDS | 40.0% | |
| TTTGATCCAGCAATGTGAAC+AGG | + | chr7.2:18390144-18390163 | None:intergenic | 40.0% | |
| TTTGTGAATGCAAGCAAGCA+TGG | - | chr7.2:18390975-18390994 | MS.gene014028:intron | 40.0% | |
| ! | AAGGGTATGATTGGGAGATA+AGG | - | chr7.2:18391669-18391688 | MS.gene014028:intron | 40.0% |
| ! | ACAGGTGAAAAGAGGTTTTG+TGG | + | chr7.2:18390126-18390145 | None:intergenic | 40.0% |
| ! | ATTTTGCCTGCAAACGAAAG+TGG | + | chr7.2:18392088-18392107 | None:intergenic | 40.0% |
| ! | CAGGTTTTCCCGACAATATA+AGG | - | chr7.2:18392331-18392350 | MS.gene014028:CDS | 40.0% |
| ! | CCCTTATTCTAAAAGGCAAG+AGG | - | chr7.2:18390890-18390909 | MS.gene014028:intron | 40.0% |
| ! | TTGCTGTCACGAGTTCTAAT+AGG | - | chr7.2:18390316-18390335 | MS.gene014028:CDS | 40.0% |
| ! | TTTTCACCTGTTCACATTGC+TGG | - | chr7.2:18390135-18390154 | MS.gene014028:CDS | 40.0% |
| !! | AGAGGACTTGCTTTTCCTAA+TGG | - | chr7.2:18392189-18392208 | MS.gene014028:intron | 40.0% |
| !! | CAGGTGAAAAGAGGTTTTGT+GGG | + | chr7.2:18390125-18390144 | None:intergenic | 40.0% |
| !! | GAAGTGAAGGTCTTGTTAAG+AGG | - | chr7.2:18392171-18392190 | MS.gene014028:intron | 40.0% |
| !! | GGTGTTGCTTTAAGCAAAGA+TGG | - | chr7.2:18392210-18392229 | MS.gene014028:intron | 40.0% |
| !!! | CCCTCTTGCCTTTTAGAATA+AGG | + | chr7.2:18390894-18390913 | None:intergenic | 40.0% |
| !!! | GTATTGACTTTGCCAGCTTT+TGG | + | chr7.2:18392297-18392316 | None:intergenic | 40.0% |
| ACTGCAGAATTCTTCGGCTT+TGG | - | chr7.2:18392262-18392281 | MS.gene014028:intron | 45.0% | |
| AGTTAGAGCATATTTGCGGG+AGG | - | chr7.2:18391276-18391295 | MS.gene014028:CDS | 45.0% | |
| CAAGCACAGTCTATCAGAGA+AGG | - | chr7.2:18391489-18391508 | MS.gene014028:intron | 45.0% | |
| CCTCGAACTGCAGAATTCTT+CGG | - | chr7.2:18392256-18392275 | MS.gene014028:intron | 45.0% | |
| GAAATCTTGGGAGATTGGCA+AGG | - | chr7.2:18392429-18392448 | MS.gene014028:CDS | 45.0% | |
| GCTATAAAGCTGAGTGGTGA+AGG | - | chr7.2:18392396-18392415 | MS.gene014028:CDS | 45.0% | |
| TACCTTGGCCTCAATGTAGT+GGG | - | chr7.2:18391353-18391372 | MS.gene014028:intron | 45.0% | |
| TCAGCAGCTATAAAGCTGAG+TGG | - | chr7.2:18392390-18392409 | MS.gene014028:CDS | 45.0% | |
| TTACCTTGGCCTCAATGTAG+TGG | - | chr7.2:18391352-18391371 | MS.gene014028:intron | 45.0% | |
| TTCTTAGTGGAGACGCAACT+GGG | - | chr7.2:18392118-18392137 | MS.gene014028:intron | 45.0% | |
| ! | TCAATGTAGTGGGACCTACT+GGG | - | chr7.2:18391363-18391382 | MS.gene014028:intron | 45.0% |
| ! | TGCTCTAACTTTGGTGCGAA+TGG | + | chr7.2:18391266-18391285 | None:intergenic | 45.0% |
| !! | GAGGTTTTGTGGGTTGAATG+AGG | + | chr7.2:18390115-18390134 | None:intergenic | 45.0% |
| !! | GCATGAGAAGAGTGCTAGAA+AGG | + | chr7.2:18390085-18390104 | None:intergenic | 45.0% |
| !!! | GGATGGTCGGATTTTGAAGT+GGG | - | chr7.2:18390266-18390285 | MS.gene014028:CDS | 45.0% |
| AGTTTAGGAGGGGAGAGAAG+AGG | + | chr7.2:18391920-18391939 | None:intergenic | 50.0% | |
| CAGTAGGTCCCACTACATTG+AGG | + | chr7.2:18391364-18391383 | None:intergenic | 50.0% | |
| CCGAAGAATTCTGCAGTTCG+AGG | + | chr7.2:18392259-18392278 | None:intergenic | 50.0% | |
| CTTCTTAGTGGAGACGCAAC+TGG | - | chr7.2:18392117-18392136 | MS.gene014028:intron | 50.0% | |
| ! | AATGTAGTGGGACCTACTGG+GGG | - | chr7.2:18391365-18391384 | MS.gene014028:intron | 50.0% |
| ! | ATTCTTCGGCTTTGGCTTCG+TGG | - | chr7.2:18392270-18392289 | MS.gene014028:CDS | 50.0% |
| ! | CAATGTAGTGGGACCTACTG+GGG | - | chr7.2:18391364-18391383 | MS.gene014028:intron | 50.0% |
| ! | CTCAATGTAGTGGGACCTAC+TGG | - | chr7.2:18391362-18391381 | MS.gene014028:intron | 50.0% |
| ! | TGTTGGCCACTTTCGTTTGC+AGG | - | chr7.2:18392079-18392098 | MS.gene014028:intron | 50.0% |
| !! | CGGATGGTCGGATTTTGAAG+TGG | - | chr7.2:18390265-18390284 | MS.gene014028:CDS | 50.0% |
| !!! | GATTTTGAAGTGGGAGGGGA+AGG | - | chr7.2:18390275-18390294 | MS.gene014028:CDS | 50.0% |
| !!! | GGTCGGATTTTGAAGTGGGA+GGG | - | chr7.2:18390270-18390289 | MS.gene014028:CDS | 50.0% |
| !!! | GTCGGATTTTGAAGTGGGAG+GGG | - | chr7.2:18390271-18390290 | MS.gene014028:CDS | 50.0% |
| !!! | TGGTCGGATTTTGAAGTGGG+AGG | - | chr7.2:18390269-18390288 | MS.gene014028:CDS | 50.0% |
| AACAAGACTCTCCGGTCCGA+CGG | + | chr7.2:18390208-18390227 | None:intergenic | 55.0% | |
| CATATTTGCGGGAGGCCACT+AGG | - | chr7.2:18391284-18391303 | MS.gene014028:CDS | 55.0% | |
| GTCCCACTACATTGAGGCCA+AGG | + | chr7.2:18391358-18391377 | None:intergenic | 55.0% | |
| TGAGTGGCTAAACCCCCAGT+AGG | + | chr7.2:18391380-18391399 | None:intergenic | 55.0% | |
| TGGCTTCGTGGACCAAAAGC+TGG | - | chr7.2:18392282-18392301 | MS.gene014028:CDS | 55.0% | |
| ! | CGTGGAGTATCTGAGCAGCA+TGG | + | chr7.2:18390176-18390195 | None:intergenic | 55.0% |
| ! | GGAGTATCTGAGCAGCATGG+AGG | + | chr7.2:18390173-18390192 | None:intergenic | 55.0% |
| AAGTGGGAGGGGAAGGAACG+TGG | - | chr7.2:18390282-18390301 | MS.gene014028:CDS | 60.0% | |
| CATGGTGAGGGTCCGTACAC+CGG | - | chr7.2:18390237-18390256 | MS.gene014028:CDS | 60.0% | |
| CTCCACGTCACCAAAGCCGT+CGG | - | chr7.2:18390189-18390208 | MS.gene014028:CDS | 60.0% | |
| AATCCGACCATCCGCCACGC+CGG | + | chr7.2:18390259-18390278 | None:intergenic | 65.0% | |
| ACTCTCCGGTCCGACGGCTT+TGG | + | chr7.2:18390202-18390221 | None:intergenic | 65.0% | |
| CGTCACCAAAGCCGTCGGAC+CGG | - | chr7.2:18390194-18390213 | MS.gene014028:CDS | 65.0% | |
| GCGGGAGGCCACTAGGACTA+AGG | - | chr7.2:18391291-18391310 | MS.gene014028:CDS | 65.0% | |
| GGGAGGGGAAGGAACGTGGT+TGG | - | chr7.2:18390286-18390305 | MS.gene014028:CDS | 65.0% | |
| !! | GTCCGACGGCTTTGGTGACG+TGG | + | chr7.2:18390194-18390213 | None:intergenic | 65.0% |
| CCATCCGCCACGCCGGTGTA+CGG | + | chr7.2:18390252-18390271 | None:intergenic | 70.0% | |
| TGAGGGTCCGTACACCGGCG+TGG | - | chr7.2:18390242-18390261 | MS.gene014028:CDS | 70.0% | |
| !! | ACACCGGCGTGGCGGATGGT+CGG | - | chr7.2:18390253-18390272 | MS.gene014028:CDS | 70.0% |
| GGGTCCGTACACCGGCGTGG+CGG | - | chr7.2:18390245-18390264 | MS.gene014028:CDS | 75.0% | |
| ! | CCGTACACCGGCGTGGCGGA+TGG | - | chr7.2:18390249-18390268 | MS.gene014028:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 18390051 | 18392554 | 18390051 | ID=MS.gene014028 |
| chr7.2 | mRNA | 18390051 | 18392554 | 18390051 | ID=MS.gene014028.t1;Parent=MS.gene014028 |
| chr7.2 | exon | 18392268 | 18392554 | 18392268 | ID=MS.gene014028.t1.exon1;Parent=MS.gene014028.t1 |
| chr7.2 | CDS | 18392268 | 18392554 | 18392268 | ID=cds.MS.gene014028.t1;Parent=MS.gene014028.t1 |
| chr7.2 | exon | 18391095 | 18391358 | 18391095 | ID=MS.gene014028.t1.exon2;Parent=MS.gene014028.t1 |
| chr7.2 | CDS | 18391095 | 18391358 | 18391095 | ID=cds.MS.gene014028.t1;Parent=MS.gene014028.t1 |
| chr7.2 | exon | 18390051 | 18390504 | 18390051 | ID=MS.gene014028.t1.exon3;Parent=MS.gene014028.t1 |
| chr7.2 | CDS | 18390051 | 18390504 | 18390051 | ID=cds.MS.gene014028.t1;Parent=MS.gene014028.t1 |
| Gene Sequence |
| Protein sequence |
