AlfalfaGEDB | MS.gene66625

M. sativa cultivar XinJiangDaYe / MS.gene66625

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0016829 GO:0016840 GO:0016843 GO:0016844
PFAM: PF01436.24 PF03088.19 PF20067.2

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66625.t1	XP_013455698.1	96.7	391	13	0	1	391	1	391	3.50E-223	783.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66625.t1	Q8VWF6	71.2	385	108	2	8	391	7	389	1.1e-167	590.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66625.t1	A0A072UIZ0	96.7	391	13	0	1	391	1	391	2.5e-223	783.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene66625	0.802768	4.80E-49	-1.69E-46
MS.gene049501	MS.gene66625	0.813469	2.52E-51	-1.69E-46
MS.gene050026	MS.gene66625	0.835323	1.79E-56	-1.69E-46
MS.gene050657	MS.gene66625	0.812472	4.17E-51	-1.69E-46
MS.gene050721	MS.gene66625	0.800372	1.49E-48	-1.69E-46
MS.gene050759	MS.gene66625	0.819439	1.16E-52	-1.69E-46
MS.gene050962	MS.gene66625	0.80383	2.89E-49	-1.69E-46
MS.gene051247	MS.gene66625	0.814969	1.18E-51	-1.69E-46
MS.gene051265	MS.gene66625	0.805335	1.40E-49	-1.69E-46
MS.gene051279	MS.gene66625	0.807144	5.83E-50	-1.69E-46
MS.gene051594	MS.gene66625	0.818223	2.19E-52	-1.69E-46
MS.gene051720	MS.gene66625	0.808326	3.27E-50	-1.69E-46
MS.gene051744	MS.gene66625	0.823086	1.67E-53	-1.69E-46
MS.gene051957	MS.gene66625	0.808465	3.06E-50	-1.69E-46
MS.gene052020	MS.gene66625	0.800777	1.23E-48	-1.69E-46
MS.gene052459	MS.gene66625	0.803592	3.24E-49	-1.69E-46
MS.gene052516	MS.gene66625	0.802099	6.59E-49	-1.69E-46
MS.gene052519	MS.gene66625	0.823253	1.53E-53	-1.69E-46
MS.gene052561	MS.gene66625	0.82107	4.91E-53	-1.69E-46
MS.gene052582	MS.gene66625	0.806279	8.89E-50	-1.69E-46
MS.gene052584	MS.gene66625	0.800253	1.57E-48	-1.69E-46
MS.gene053144	MS.gene66625	0.801023	1.09E-48	-1.69E-46
MS.gene053883	MS.gene66625	0.811984	5.32E-51	-1.69E-46
MS.gene05410	MS.gene66625	0.81569	8.13E-52	-1.69E-46
MS.gene05414	MS.gene66625	0.837185	6.03E-57	-1.69E-46
MS.gene05415	MS.gene66625	0.840535	8.20E-58	-1.69E-46
MS.gene054236	MS.gene66625	0.802102	6.58E-49	-1.69E-46
MS.gene05423	MS.gene66625	0.836375	9.71E-57	-1.69E-46
MS.gene054651	MS.gene66625	0.818201	2.22E-52	-1.69E-46
MS.gene055466	MS.gene66625	0.824154	9.41E-54	-1.69E-46
MS.gene055778	MS.gene66625	0.834865	2.34E-56	-1.69E-46
MS.gene055818	MS.gene66625	0.828407	9.15E-55	-1.69E-46
MS.gene056174	MS.gene66625	0.856295	3.54E-62	-1.69E-46
MS.gene056373	MS.gene66625	0.804183	2.44E-49	-1.69E-46
MS.gene05690	MS.gene66625	0.810406	1.17E-50	-1.69E-46
MS.gene057444	MS.gene66625	0.820224	7.68E-53	-1.69E-46
MS.gene058037	MS.gene66625	0.816294	5.95E-52	-1.69E-46
MS.gene058294	MS.gene66625	0.805702	1.18E-49	-1.69E-46
MS.gene058625	MS.gene66625	0.816777	4.64E-52	-1.69E-46
MS.gene059272	MS.gene66625	0.816178	6.32E-52	-1.69E-46
MS.gene059625	MS.gene66625	0.819366	1.21E-52	-1.69E-46
MS.gene060167	MS.gene66625	0.808192	3.49E-50	-1.69E-46
MS.gene060521	MS.gene66625	0.808049	3.75E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene66625	MS.gene017556	PPI
MS.gene66625	MS.gene062331	PPI
MS.gene66625	MS.gene014028	PPI
MS.gene66625	MS.gene23780	PPI
MS.gene66625	MS.gene39128	PPI
MS.gene66625	MS.gene38800	PPI
MS.gene66625	MS.gene017785	PPI
MS.gene66625	MS.gene017555	PPI
MS.gene27212	MS.gene66625	PPI
MS.gene017786	MS.gene66625	PPI
MS.gene66625	MS.gene038383	PPI
MS.gene23776	MS.gene66625	PPI
MS.gene66625	MS.gene27210	PPI
MS.gene66625	MS.gene014030	PPI
MS.gene66625	MS.gene23779	PPI
MS.gene66625	MS.gene014029	PPI
MS.gene66625	MS.gene85273	PPI
MS.gene66625	MS.gene017783	PPI
MS.gene037809	MS.gene66625	PPI
MS.gene66625	MS.gene014031	PPI
MS.gene39129	MS.gene66625	PPI
MS.gene66625	MS.gene037812	PPI
MS.gene66625	MS.gene017558	PPI
MS.gene052008	MS.gene66625	PPI
MS.gene66625	MS.gene032181	PPI
MS.gene66625	MS.gene38801	PPI
MS.gene66625	MS.gene39127	PPI
MS.gene38799	MS.gene66625	PPI
MS.gene037810	MS.gene66625	PPI
MS.gene66625	MS.gene017787	PPI
MS.gene66625	MS.gene017554	PPI
MS.gene39130	MS.gene66625	PPI
MS.gene66625	MS.gene98728	PPI
MS.gene66625	MS.gene017150	PPI
MS.gene030079	MS.gene66625	PPI
MS.gene66625	MS.gene23775	PPI
MS.gene66625	MS.gene27211	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66625.t1	MTR_4g050190	96.675	391	13	0	1	391	1	391	0.0	783
MS.gene66625.t1	MTR_2g087780	78.316	392	84	1	1	391	4	395	0.0	645
MS.gene66625.t1	MTR_7g090300	51.471	340	154	5	55	391	38	369	2.10e-117	346
MS.gene66625.t1	MTR_7g490350	49.716	352	163	7	44	391	28	369	7.23e-115	339
MS.gene66625.t1	MTR_7g490330	48.680	341	125	6	54	391	32	325	2.27e-103	308
MS.gene66625.t1	MTR_2g099030	42.748	393	216	5	3	388	13	403	8.60e-103	310
MS.gene66625.t1	MTR_5g091980	47.929	338	124	6	57	391	35	323	3.43e-98	295
MS.gene66625.t1	MTR_7g090310	43.544	333	179	7	66	390	54	385	1.23e-92	283
MS.gene66625.t1	MTR_7g090320	42.988	328	179	7	70	389	58	385	3.93e-89	275
MS.gene66625.t1	MTR_4g112670	37.318	343	175	10	58	389	21	334	3.26e-71	226
MS.gene66625.t1	MTR_4g112650	37.463	339	168	11	64	389	26	333	5.62e-63	205
MS.gene66625.t1	MTR_2g058450	36.970	330	171	7	68	391	38	336	7.72e-63	205
MS.gene66625.t1	MTR_4g112630	36.364	330	161	7	68	389	36	324	3.67e-62	203
MS.gene66625.t1	MTR_8g074170	32.454	379	210	10	10	386	27	361	2.53e-47	166
MS.gene66625.t1	MTR_8g074210	33.033	333	190	8	55	387	63	362	2.78e-45	160
MS.gene66625.t1	MTR_8g074270	31.565	377	216	9	10	386	27	361	1.58e-44	158
MS.gene66625.t1	MTR_4g112620	31.193	327	153	6	68	389	40	299	6.22e-43	152
MS.gene66625.t1	MTR_2g058410	34.375	256	140	4	135	388	1	230	2.27e-39	140
MS.gene66625.t1	MTR_2g042370	31.679	262	151	5	142	391	112	357	6.89e-37	137
MS.gene66625.t1	MTR_2g042420	29.710	276	165	5	128	391	91	349	3.71e-34	130
MS.gene66625.t1	MTR_2g042430	30.303	264	171	5	128	387	110	364	3.07e-32	125
MS.gene66625.t1	MTR_0003s0530	32.524	206	114	3	179	383	2	183	4.06e-32	120
MS.gene66625.t1	MTR_1g075865	43.810	105	59	0	183	287	7	111	2.75e-27	105
MS.gene66625.t1	MTR_8g074320	40.152	132	75	2	129	257	92	222	1.20e-26	106
MS.gene66625.t1	MTR_4g112840	40.625	96	57	0	204	299	56	151	1.98e-20	87.8
MS.gene66625.t1	MTR_2g058430	50.588	85	40	2	128	211	54	137	2.06e-15	76.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66625.t1	AT1G08470	70.984	386	109	2	7	391	6	389	0.0	586
MS.gene66625.t1	AT5G22020	68.085	376	117	2	17	391	22	395	0.0	551
MS.gene66625.t1	AT5G22020	68.085	376	117	2	17	391	22	395	0.0	551
MS.gene66625.t1	AT5G22020	68.085	376	117	2	17	391	22	395	0.0	551
MS.gene66625.t1	AT3G57030	49.568	347	166	4	48	391	34	374	2.63e-119	351
MS.gene66625.t1	AT3G59530	43.687	396	201	7	1	388	13	394	1.05e-103	312
MS.gene66625.t1	AT3G59530	43.687	396	201	7	1	388	13	394	1.05e-103	312
MS.gene66625.t1	AT3G59530	43.687	396	201	7	1	388	13	394	1.05e-103	312
MS.gene66625.t1	AT3G57010	47.853	326	155	6	68	388	52	367	1.71e-99	300
MS.gene66625.t1	AT3G57020	47.879	330	149	8	68	388	51	366	1.16e-94	288
MS.gene66625.t1	AT2G41300	45.426	317	159	5	76	388	84	390	1.26e-91	281
MS.gene66625.t1	AT3G57020	46.037	328	144	7	68	388	51	352	1.68e-88	272
MS.gene66625.t1	AT2G41290	41.226	359	192	9	46	391	24	376	7.95e-85	263
MS.gene66625.t1	AT1G74010	38.438	333	158	11	66	391	33	325	4.98e-53	179
MS.gene66625.t1	AT1G74000	37.082	329	161	10	70	391	40	329	1.95e-52	177
MS.gene66625.t1	AT1G74020	34.545	330	170	9	69	391	37	327	1.28e-49	171
MS.gene66625.t1	AT3G51440	33.333	264	151	5	56	317	55	295	4.63e-35	133
MS.gene66625.t1	AT3G51420	29.552	335	201	9	56	387	55	357	2.08e-34	131
MS.gene66625.t1	AT3G51430	31.559	263	155	5	57	317	56	295	1.90e-33	128
MS.gene66625.t1	AT3G51450	29.870	308	186	9	10	317	18	295	2.77e-32	125
MS.gene66625.t1	AT3G51430	31.559	263	153	6	57	317	56	293	3.77e-32	125

Find 101 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTACGTAAATATTGGTTAAA+AGG	0.214137	4.3:+49481340	MS.gene66625:CDS
TGTTCTGGAATGGACTTTCT+TGG	0.216538	4.3:+49478312	MS.gene66625:CDS
CCCTGAATTTGAATCCAAAA+AGG	0.232481	4.3:+49478127	MS.gene66625:CDS
TTATGTTCATCTCTGTCTTT+AGG	0.242130	4.3:-49478176	None:intergenic
AGGATTTAACCTTACCTATT+AGG	0.245032	4.3:-49478356	None:intergenic
AGTTTATAAACTGCAATAAA+AGG	0.276571	4.3:-49481712	None:intergenic
TTGCTTACACCTCGCCTAAT+AGG	0.301819	4.3:+49478342	MS.gene66625:CDS
TACATTGCAGATGCATATCT+TGG	0.310576	4.3:+49480172	MS.gene66625:CDS
TGTGTAGATTACGTAAATAT+TGG	0.346326	4.3:+49481332	MS.gene66625:intron
CTTGGTCGTGGACCTTATAC+TGG	0.347823	4.3:+49478269	MS.gene66625:CDS
TATTGATTCTTTGTTGGTAT+TGG	0.352926	4.3:-49481529	None:intergenic
GAAGGAACCATCTTTGCTTA+AGG	0.369652	4.3:-49480820	None:intergenic
CACATATGTGGAAGGCCTTT+GGG	0.371425	4.3:+49480118	MS.gene66625:CDS
GCACATATGTGGAAGGCCTT+TGG	0.374573	4.3:+49480117	MS.gene66625:CDS
TCAGTCTTCACATAACTAAA+TGG	0.375496	4.3:-49480094	None:intergenic
GTTCTGGAATGGACTTTCTT+GGG	0.382508	4.3:+49478313	MS.gene66625:CDS
ACAGCGGTTTCCTTTGTTGC+AGG	0.383637	4.3:-49480762	None:intergenic
AGCAAACAAGAGAAAGATAA+TGG	0.392575	4.3:-49478057	None:intergenic
TGCTTAAGGAAATGCCATTC+GGG	0.393137	4.3:-49480806	None:intergenic
ATCTGCAGTAATTTACCTTC+AGG	0.399510	4.3:-49481601	None:intergenic
AGTATAGCTTTCCTTATCCT+TGG	0.402497	4.3:-49481499	None:intergenic
GGCATTTCCTTAAGCAAAGA+TGG	0.407911	4.3:+49480813	MS.gene66625:CDS
GCTTACCTCCGATTTGAAAC+AGG	0.409854	4.3:-49481552	None:intergenic
GCTATGGTACTGTGGTGAAA+TGG	0.416946	4.3:-49478098	None:intergenic
CTATGGTACTGTGGTGAAAT+GGG	0.424558	4.3:-49478097	None:intergenic
AGGTAAATTACTGCAGATAT+TGG	0.424873	4.3:+49481606	MS.gene66625:CDS
TTGCTTAAGGAAATGCCATT+CGG	0.429482	4.3:-49480807	None:intergenic
TCATTCACCCTCACATTGTC+GGG	0.430646	4.3:-49481409	None:intergenic
CCATCAGCAACACCAGTATA+AGG	0.434274	4.3:-49478281	None:intergenic
AACAGGTATTGATTCTTTGT+TGG	0.434766	4.3:-49481535	None:intergenic
CTCAGATTTGACAAGAAAAC+AGG	0.439068	4.3:+49480142	MS.gene66625:CDS
ACATCGTTAGTAAATCTTAG+AGG	0.441444	4.3:-49480259	None:intergenic
AAAAGGTTGACATGCCTGAT+TGG	0.446198	4.3:+49478144	MS.gene66625:CDS
CTGGTTTATATCCAAGGATA+AGG	0.446658	4.3:+49481488	MS.gene66625:CDS
TTCATTCACCCTCACATTGT+CGG	0.455467	4.3:-49481410	None:intergenic
AAATGGTGTCGCATTTGCTA+TGG	0.459583	4.3:-49480077	None:intergenic
AAAGATGGTCAACTTTGGAT+TGG	0.469113	4.3:+49481676	MS.gene66625:CDS
AATCAATACCTGTTTCAAAT+CGG	0.471637	4.3:+49481544	MS.gene66625:CDS
CTCACATTGTCGGGAGCTCC+AGG	0.471745	4.3:-49481400	None:intergenic
CTGTTGAAGGTGGGGCCCGA+GGG	0.473423	4.3:+49480196	MS.gene66625:CDS
AGCATTGTGTTTGACCCTCT+TGG	0.482152	4.3:+49478251	MS.gene66625:CDS
AAGAGAAAGATGGTCAACTT+TGG	0.483380	4.3:+49481671	MS.gene66625:CDS
TTTGTGAAGGGTCTATTGGC+AGG	0.483688	4.3:+49480850	MS.gene66625:CDS
GCTGTTGAAGGTGGGGCCCG+AGG	0.486767	4.3:+49480195	MS.gene66625:CDS
TTGAAGGTGGGGCCCGAGGG+AGG	0.489783	4.3:+49480199	MS.gene66625:CDS
TATCTTGGGCTGTTGAAGGT+GGG	0.490836	4.3:+49480187	MS.gene66625:CDS
GAAATACAACCCTGCAACAA+AGG	0.493586	4.3:+49480752	MS.gene66625:CDS
ATCTTGGGCTGTTGAAGGTG+GGG	0.493839	4.3:+49480188	MS.gene66625:CDS
AGATGTTGCTAAACCTCCCT+CGG	0.499939	4.3:-49480212	None:intergenic
GTGTTTGACCCTCTTGGTCG+TGG	0.500600	4.3:+49478257	MS.gene66625:CDS
GTACAGGAATTTCATGCAGC+TGG	0.501498	4.3:+49480698	MS.gene66625:intron
ATATTGGTTAAAAGGAGAAA+AGG	0.502297	4.3:+49481348	MS.gene66625:CDS
CTCTTGCAACTGAGGCTGAA+GGG	0.504563	4.3:+49480233	MS.gene66625:CDS
TTAGGAACCTCAGACCAATC+AGG	0.508111	4.3:-49478158	None:intergenic
TGCATATCTTGGGCTGTTGA+AGG	0.508916	4.3:+49480183	MS.gene66625:CDS
GGGTCAAACACAATGCTCTC+AGG	0.511757	4.3:-49478245	None:intergenic
TGGTTAAAAGGAGAAAAGGC+TGG	0.512231	4.3:+49481352	MS.gene66625:CDS
CAGCGGTTTCCTTTGTTGCA+GGG	0.514020	4.3:-49480761	None:intergenic
TTCTGGGGATGATAGTGGAA+AGG	0.516244	4.3:+49480725	MS.gene66625:CDS
AATGGTGTCGCATTTGCTAT+GGG	0.516733	4.3:-49480076	None:intergenic
AGGAGAAAAGGCTGGGACAT+CGG	0.522741	4.3:+49481360	MS.gene66625:CDS
TGTTAGAGCTGTGAGTGAAG+TGG	0.524832	4.3:+49481648	MS.gene66625:CDS
AAATTCAGGGAAATTTGCTA+TGG	0.527486	4.3:-49478114	None:intergenic
ACATTGCAGATGCATATCTT+GGG	0.529752	4.3:+49480173	MS.gene66625:CDS
ATATCTTGGGCTGTTGAAGG+TGG	0.531295	4.3:+49480186	MS.gene66625:CDS
CTCTTGTTTGCTCTATACTG+TGG	0.532134	4.3:+49478068	MS.gene66625:CDS
CCTTATACTGGTGTTGCTGA+TGG	0.535929	4.3:+49478281	MS.gene66625:CDS
ACTATACTGGTTTATATCCA+AGG	0.552390	4.3:+49481482	MS.gene66625:CDS
GATGTTGCTAAACCTCCCTC+GGG	0.566662	4.3:-49480211	None:intergenic
TCTTGCAACTGAGGCTGAAG+GGG	0.566753	4.3:+49480234	MS.gene66625:CDS
TAAATTACTGCAGATATTGG+AGG	0.568473	4.3:+49481609	MS.gene66625:CDS
AGCAACATCTCTTGCAACTG+AGG	0.569286	4.3:+49480225	MS.gene66625:CDS
TCTCTTGCAACTGAGGCTGA+AGG	0.569638	4.3:+49480232	MS.gene66625:CDS
GAGATCTTAGCTATCCTACC+TGG	0.569639	4.3:+49481382	MS.gene66625:CDS
CAAGAGAAAGATAATGGCAA+AGG	0.575699	4.3:-49478051	None:intergenic
GGTTAAAAGGAGAAAAGGCT+GGG	0.576153	4.3:+49481353	MS.gene66625:CDS
AGGAAACCGCTGTTCTAGTG+AGG	0.578954	4.3:+49480772	MS.gene66625:CDS
CTGGAGCTCCCGACAATGTG+AGG	0.585247	4.3:+49481401	MS.gene66625:CDS
TTGTCAAATCTGAGTCCCAA+AGG	0.599150	4.3:-49480133	None:intergenic
CAATACCTGTTTCAAATCGG+AGG	0.600119	4.3:+49481547	MS.gene66625:CDS
GTGAAGACTGAGCACATATG+TGG	0.600536	4.3:+49480106	MS.gene66625:CDS
GCAGTTCTATTTATCAGAGG+AGG	0.604762	4.3:+49480320	MS.gene66625:CDS
AACATCCCTCACTAGAACAG+CGG	0.608476	4.3:-49480778	None:intergenic
CAAATCGGAGGTAAGCAACA+TGG	0.612312	4.3:+49481559	MS.gene66625:CDS
AAAGCAGTTCTATTTATCAG+AGG	0.613913	4.3:+49480317	MS.gene66625:CDS
GGAAACCGCTGTTCTAGTGA+GGG	0.616307	4.3:+49480773	MS.gene66625:CDS
TGGAGCTCCCGACAATGTGA+GGG	0.616670	4.3:+49481402	MS.gene66625:CDS
TGACATGCCTGATTGGTCTG+AGG	0.623043	4.3:+49478151	MS.gene66625:CDS
AGTGAAGTGGAAGAGAAAGA+TGG	0.626890	4.3:+49481661	MS.gene66625:CDS
CAGATATTGGAGGACAGTGA+GGG	0.630580	4.3:+49481619	MS.gene66625:CDS
GCAGATATTGGAGGACAGTG+AGG	0.631429	4.3:+49481618	MS.gene66625:CDS
GATGTCGATGTTGATTCAGA+AGG	0.631934	4.3:+49480277	MS.gene66625:CDS
AATGTGAGGGTGAATGAAGA+TGG	0.632486	4.3:+49481415	MS.gene66625:CDS
CATTGTCGGGAGCTCCAGGT+AGG	0.648945	4.3:-49481396	None:intergenic
AGGGATGTTCAATTCCCGAA+TGG	0.653548	4.3:+49480792	MS.gene66625:CDS
AGACTGAGCACATATGTGGA+AGG	0.658947	4.3:+49480110	MS.gene66625:CDS
ATTGTGAAGTATAGTCCTGA+AGG	0.659981	4.3:+49481586	MS.gene66625:CDS
TTAACCTTACCTATTAGGCG+AGG	0.666533	4.3:-49478351	None:intergenic
GTATAAGGTCCACGACCAAG+AGG	0.671165	4.3:-49478266	None:intergenic
TATAAGGTCCACGACCAAGA+GGG	0.672876	4.3:-49478265	None:intergenic
GGAAATTTGCTATGGTACTG+TGG	0.697740	4.3:-49478106	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGTTTGTAAAAAAAAAAAAT+GGG	-	chr4.3:49481237-49481256	None:intergenic	10.0%
!!	TTGTTTGTAAAAAAAAAAAA+TGG	-	chr4.3:49481238-49481257	None:intergenic	10.0%
!!!	AATTTTGTACAATTTTTATT+TGG	-	chr4.3:49478746-49478765	None:intergenic	10.0%
!!!	ATTTTGTACAATTTTTATTT+GGG	-	chr4.3:49478745-49478764	None:intergenic	10.0%
!!!	ATTTTTTTTTTTTACAAACA+AGG	+	chr4.3:49481237-49481256	MS.gene66625:intron	10.0%
!!!	TATTTTTAAAAGATTCATTT+TGG	-	chr4.3:49479901-49479920	None:intergenic	10.0%
!!	AAGAAATTATTGAAATGAAA+AGG	-	chr4.3:49481310-49481329	None:intergenic	15.0%
!!	GTTTGTAAAAAAAAAAAATG+GGG	-	chr4.3:49481236-49481255	None:intergenic	15.0%
!!	TATAAAAAGAGTTATTGTTA+AGG	-	chr4.3:49478531-49478550	None:intergenic	15.0%
!!	TATATATCTATTTCAAAAAC+AGG	+	chr4.3:49480041-49480060	MS.gene66625:intron	15.0%
!!	TGACAATAATAAATAGTAAA+AGG	-	chr4.3:49478808-49478827	None:intergenic	15.0%
!!	TTTCAGAATTAAAAACATTA+AGG	-	chr4.3:49480627-49480646	None:intergenic	15.0%
!!!	TAAAGTAGTCAATTTTATAT+GGG	-	chr4.3:49478877-49478896	None:intergenic	15.0%
!!!	TAATTTTGAGTAAAAGATAA+AGG	+	chr4.3:49479933-49479952	MS.gene66625:intron	15.0%
!!!	TTAAAGTAGTCAATTTTATA+TGG	-	chr4.3:49478878-49478897	None:intergenic	15.0%
!!!	TTTAGTTTATTTTTAAGCTT+TGG	+	chr4.3:49479971-49479990	MS.gene66625:intron	15.0%
!!	AATAAGTAAGTATATACCAA+GGG	+	chr4.3:49478566-49478585	MS.gene66625:intron	20.0%
!!	AGTTTATAAACTGCAATAAA+AGG	-	chr4.3:49481715-49481734	None:intergenic	20.0%
!!	CATATTCATAGATTAACATA+AGG	+	chr4.3:49479341-49479360	MS.gene66625:intron	20.0%
!!	TATAACATTGCAAAGATAAA+AGG	-	chr4.3:49479520-49479539	None:intergenic	20.0%
!!	TCAAAATATATCACTTTAGA+CGG	-	chr4.3:49481003-49481022	None:intergenic	20.0%
!!	TGTTAATCTATGAATATGAA+TGG	-	chr4.3:49479339-49479358	None:intergenic	20.0%
!!!	AATGTATTATGTTAGTTTCT+TGG	+	chr4.3:49480932-49480951	MS.gene66625:intron	20.0%
!!!	AGAAGGAAATGTTTATTTTA+CGG	+	chr4.3:49480294-49480313	MS.gene66625:CDS	20.0%
!!!	ATCTTTTACTCAGTTTATTT+TGG	+	chr4.3:49479465-49479484	MS.gene66625:intron	20.0%
!!!	ATGTATTATGTTAGTTTCTT+GGG	+	chr4.3:49480933-49480952	MS.gene66625:intron	20.0%
!!!	GAAATTTTATCTGTTATAGT+AGG	+	chr4.3:49480959-49480978	MS.gene66625:intron	20.0%
!!!	TTACGTAAATATTGGTTAAA+AGG	+	chr4.3:49481340-49481359	MS.gene66625:CDS	20.0%
!!!	TTAGAATTTTGATGCATTTA+AGG	+	chr4.3:49478671-49478690	MS.gene66625:intron	20.0%
!	AAAAAAAAAAATGGGGAAGA+AGG	-	chr4.3:49481229-49481248	None:intergenic	25.0%
!	AATCAATACCTGTTTCAAAT+CGG	+	chr4.3:49481544-49481563	MS.gene66625:CDS	25.0%
!	ACTATATACTCCTAAAGTAA+AGG	+	chr4.3:49478431-49478450	MS.gene66625:intron	25.0%
!	ACTTTAATGTAGGTAGTAAA+TGG	+	chr4.3:49479843-49479862	MS.gene66625:intron	25.0%
!	AGGTAATACTATATAGTTGA+GGG	+	chr4.3:49478940-49478959	MS.gene66625:intron	25.0%
!	ATACAAATATAGTGAAAGGA+AGG	-	chr4.3:49479608-49479627	None:intergenic	25.0%
!	CAATAAGTAAGTATATACCA+AGG	+	chr4.3:49478565-49478584	MS.gene66625:intron	25.0%
!	CAGACATAGGAATTTAATAT+AGG	-	chr4.3:49481264-49481283	None:intergenic	25.0%
!	CATTAAAAACTGTTATGTAG+CGG	+	chr4.3:49479066-49479085	MS.gene66625:intron	25.0%
!	CATTCACCAATAAAAAAAGA+CGG	-	chr4.3:49480902-49480921	None:intergenic	25.0%
!	CTGAGTAAAAGATAAAAGAT+AGG	-	chr4.3:49479458-49479477	None:intergenic	25.0%
!	CTTGATATTGTGGAAAATTA+CGG	+	chr4.3:49479001-49479020	MS.gene66625:intron	25.0%
!	GAATAATCATATCCTTAAGA+GGG	+	chr4.3:49480449-49480468	MS.gene66625:intron	25.0%
!	GATTGATAGAACAGTATTAA+CGG	+	chr4.3:49478592-49478611	MS.gene66625:intron	25.0%
!	TAATTAGTTGTTAGAAATGC+TGG	-	chr4.3:49479236-49479255	None:intergenic	25.0%
!	TCAGATTCAACAAAAGAAAA+AGG	-	chr4.3:49479431-49479450	None:intergenic	25.0%
!	TGATTCTGTTGTTAAACTTT+CGG	+	chr4.3:49480345-49480364	MS.gene66625:intron	25.0%
!	TGTGTAGATTACGTAAATAT+TGG	+	chr4.3:49481332-49481351	MS.gene66625:intron	25.0%
!	TTCGATACAAATATAGTGAA+AGG	-	chr4.3:49479612-49479631	None:intergenic	25.0%
!!	ACTCTTATAATTTGAGATAG+AGG	+	chr4.3:49478920-49478939	MS.gene66625:intron	25.0%
!!	ATATTGGTTAAAAGGAGAAA+AGG	+	chr4.3:49481348-49481367	MS.gene66625:CDS	25.0%
!!	GATTCATGATTTTCAAAGTT+TGG	-	chr4.3:49479705-49479724	None:intergenic	25.0%
!!	TATGCAAAGAAAGTACATAT+AGG	-	chr4.3:49480575-49480594	None:intergenic	25.0%
!!	TCTATGTTTTCATACTATAC+TGG	+	chr4.3:49481469-49481488	MS.gene66625:CDS	25.0%
!!!	ATGGATATTTTGATTATCAC+AGG	+	chr4.3:49479777-49479796	MS.gene66625:intron	25.0%
!!!	CTTTAATGTTATTTTCCTAC+AGG	+	chr4.3:49478781-49478800	MS.gene66625:intron	25.0%
!!!	GGATTTTTTGTTCATTCTTT+AGG	+	chr4.3:49478391-49478410	MS.gene66625:intron	25.0%
!!!	TATTGATTCTTTGTTGGTAT+TGG	-	chr4.3:49481532-49481551	None:intergenic	25.0%
	AAAAATCCTGAGAAGGAATT+AGG	-	chr4.3:49478379-49478398	None:intergenic	30.0%
	AAAGCAGTTCTATTTATCAG+AGG	+	chr4.3:49480317-49480336	MS.gene66625:CDS	30.0%
	AACATTGAGATTAGATTAGC+AGG	-	chr4.3:49481058-49481077	None:intergenic	30.0%
	ACATCGTTAGTAAATCTTAG+AGG	-	chr4.3:49480262-49480281	None:intergenic	30.0%
	ACTTCATACACACAAAATGA+TGG	-	chr4.3:49480398-49480417	None:intergenic	30.0%
	AGCAAACAAGAGAAAGATAA+TGG	-	chr4.3:49478060-49478079	None:intergenic	30.0%
	AGGATTTAACCTTACCTATT+AGG	-	chr4.3:49478359-49478378	None:intergenic	30.0%
	AGGTAAATTACTGCAGATAT+TGG	+	chr4.3:49481606-49481625	MS.gene66625:CDS	30.0%
	ATGAACAAAAAATCCTGAGA+AGG	-	chr4.3:49478386-49478405	None:intergenic	30.0%
	ATTAAGGACAATGGTTTAAC+TGG	+	chr4.3:49480528-49480547	MS.gene66625:intron	30.0%
	CATGAATCGTACTGAAATTA+GGG	+	chr4.3:49479717-49479736	MS.gene66625:intron	30.0%
	GAGGTAATACTATATAGTTG+AGG	+	chr4.3:49478939-49478958	MS.gene66625:intron	30.0%
	GGAATAATCATATCCTTAAG+AGG	+	chr4.3:49480448-49480467	MS.gene66625:intron	30.0%
	GGTTATTTATCTTAGCAATG+CGG	-	chr4.3:49479880-49479899	None:intergenic	30.0%
	TAAATAGTAAAAGGTCCTGT+AGG	-	chr4.3:49478799-49478818	None:intergenic	30.0%
	TAAATTACTGCAGATATTGG+AGG	+	chr4.3:49481609-49481628	MS.gene66625:CDS	30.0%
	TAAGGACTATTTCAACATCA+AGG	-	chr4.3:49478513-49478532	None:intergenic	30.0%
	TCAGTCTTCACATAACTAAA+TGG	-	chr4.3:49480097-49480116	None:intergenic	30.0%
	TCATGAATCGTACTGAAATT+AGG	+	chr4.3:49479716-49479735	MS.gene66625:intron	30.0%
	TCTCGCAGACAATATAATAT+AGG	-	chr4.3:49481088-49481107	None:intergenic	30.0%
	TGCAAAACTACCTTTACTTT+AGG	-	chr4.3:49478444-49478463	None:intergenic	30.0%
	TGGAAATAGCTATCATTTGA+CGG	+	chr4.3:49479139-49479158	MS.gene66625:intron	30.0%
	TGTTGCAAAAATCAGAGATA+AGG	+	chr4.3:49478201-49478220	MS.gene66625:CDS	30.0%
	TTAAATCCTAATTCCTTCTC+AGG	+	chr4.3:49478370-49478389	MS.gene66625:intron	30.0%
	TTAAGGACAATGGTTTAACT+GGG	+	chr4.3:49480529-49480548	MS.gene66625:intron	30.0%
	TTATGTTCATCTCTGTCTTT+AGG	-	chr4.3:49478179-49478198	None:intergenic	30.0%
	TTTAGCATGATTTCAGACAT+AGG	-	chr4.3:49481277-49481296	None:intergenic	30.0%
	TTTCAAGACACTTCATTAGT+TGG	+	chr4.3:49479119-49479138	MS.gene66625:intron	30.0%
	TTTGTGTGTATGAAGTTCAT+TGG	+	chr4.3:49480402-49480421	MS.gene66625:intron	30.0%
!	ACCTTTTTGGATTCAAATTC+AGG	-	chr4.3:49478131-49478150	None:intergenic	30.0%
!	AGATGTGTTATTAAGGACAA+TGG	+	chr4.3:49480519-49480538	MS.gene66625:intron	30.0%
!	AGGTTTTTGAATCAAGTACA+AGG	+	chr4.3:49478221-49478240	MS.gene66625:CDS	30.0%
!	ATGTGCAAGATGTGTTATTA+AGG	+	chr4.3:49480512-49480531	MS.gene66625:intron	30.0%
!	ATTTTCCACAATATCAAGGA+TGG	-	chr4.3:49478999-49479018	None:intergenic	30.0%
!	CCTTTTTGGATTCAAATTCA+GGG	-	chr4.3:49478130-49478149	None:intergenic	30.0%
!	CGTAATTTTCCACAATATCA+AGG	-	chr4.3:49479003-49479022	None:intergenic	30.0%
!	GAATGAAGATGGTGATTTTT+GGG	+	chr4.3:49481426-49481445	MS.gene66625:CDS	30.0%
!	GATTTTCAAAGTTTGGACAT+GGG	-	chr4.3:49479698-49479717	None:intergenic	30.0%
!	TGAATGAAGATGGTGATTTT+TGG	+	chr4.3:49481425-49481444	MS.gene66625:CDS	30.0%
!	TGATTTTCAAAGTTTGGACA+TGG	-	chr4.3:49479699-49479718	None:intergenic	30.0%
!	TTCTGACATAATTTGTGTAC+AGG	+	chr4.3:49480682-49480701	MS.gene66625:intron	30.0%
!!	AAATTCAGGGAAATTTGCTA+TGG	-	chr4.3:49478117-49478136	None:intergenic	30.0%
!!	AACAGGTATTGATTCTTTGT+TGG	-	chr4.3:49481538-49481557	None:intergenic	30.0%
!!	ACTATACTGGTTTATATCCA+AGG	+	chr4.3:49481482-49481501	MS.gene66625:CDS	30.0%
!!	TAAAGGTAGTTTTGCAAGAA+GGG	+	chr4.3:49478448-49478467	MS.gene66625:intron	30.0%
!!!	AGCTATCCGTCTTTTTTTAT+TGG	+	chr4.3:49480893-49480912	MS.gene66625:intron	30.0%
!!!	CCTTCTTTGTTTTTTGTGAA+GGG	+	chr4.3:49480838-49480857	MS.gene66625:CDS	30.0%
!!!	TCCTTCTTTGTTTTTTGTGA+AGG	+	chr4.3:49480837-49480856	MS.gene66625:CDS	30.0%
	AAAACTGTTATGTAGCGGTT+TGG	+	chr4.3:49479071-49479090	MS.gene66625:intron	35.0%
	AAAAGGCTTGAACAAATTGC+TGG	-	chr4.3:49479414-49479433	None:intergenic	35.0%
	AAAGATGGTCAACTTTGGAT+TGG	+	chr4.3:49481676-49481695	MS.gene66625:CDS	35.0%
	AAATAGCTATCATTTGACGG+AGG	+	chr4.3:49479142-49479161	MS.gene66625:intron	35.0%
	AAGAGAAAGATGGTCAACTT+TGG	+	chr4.3:49481671-49481690	MS.gene66625:CDS	35.0%
	AATAGCTATCATTTGACGGA+GGG	+	chr4.3:49479143-49479162	MS.gene66625:intron	35.0%
	ACATTGCAGATGCATATCTT+GGG	+	chr4.3:49480173-49480192	MS.gene66625:CDS	35.0%
	ACCTGCATATATAAGTTTCG+TGG	+	chr4.3:49480478-49480497	MS.gene66625:intron	35.0%
	AGTATAGCTTTCCTTATCCT+TGG	-	chr4.3:49481502-49481521	None:intergenic	35.0%
	AGTGTCTTGAAACTCATTGT+TGG	-	chr4.3:49479111-49479130	None:intergenic	35.0%
	ATCTGCAGTAATTTACCTTC+AGG	-	chr4.3:49481604-49481623	None:intergenic	35.0%
	ATTGTGAAGTATAGTCCTGA+AGG	+	chr4.3:49481586-49481605	MS.gene66625:CDS	35.0%
	CAGTTAGGACACTTTAATGT+AGG	+	chr4.3:49479833-49479852	MS.gene66625:intron	35.0%
	CCCTGAATTTGAATCCAAAA+AGG	+	chr4.3:49478127-49478146	MS.gene66625:CDS	35.0%
	CCCTTCACAAAAAACAAAGA+AGG	-	chr4.3:49480841-49480860	None:intergenic	35.0%
	CTCAGATTTGACAAGAAAAC+AGG	+	chr4.3:49480142-49480161	MS.gene66625:CDS	35.0%
	CTGGTTTATATCCAAGGATA+AGG	+	chr4.3:49481488-49481507	MS.gene66625:CDS	35.0%
	CTTGCAATGGCATGATTAAA+TGG	+	chr4.3:49480003-49480022	MS.gene66625:intron	35.0%
	CTTTGAGCAGTTGTATAATC+AGG	+	chr4.3:49479304-49479323	MS.gene66625:intron	35.0%
	TACATTGCAGATGCATATCT+TGG	+	chr4.3:49480172-49480191	MS.gene66625:CDS	35.0%
	TAGTTGAGGGTTGTAAATAG+AGG	+	chr4.3:49478953-49478972	MS.gene66625:intron	35.0%
	TCCACGAAACTTATATATGC+AGG	-	chr4.3:49480482-49480501	None:intergenic	35.0%
	TGATTATCACAGGCAAAGTT+GGG	+	chr4.3:49479787-49479806	MS.gene66625:intron	35.0%
	TGGAAAATTACGGTCAAATG+TGG	+	chr4.3:49479011-49479030	MS.gene66625:intron	35.0%
	TGTTCTATCAATCAATCCCT+TGG	-	chr4.3:49478585-49478604	None:intergenic	35.0%
	TTAGTTGTTAGAAATGCTGG+TGG	-	chr4.3:49479233-49479252	None:intergenic	35.0%
	TTGATTATCACAGGCAAAGT+TGG	+	chr4.3:49479786-49479805	MS.gene66625:intron	35.0%
	TTGCTTAAGGAAATGCCATT+CGG	-	chr4.3:49480810-49480829	None:intergenic	35.0%
!	ATTTTACAATTGTCTCCGAG+AGG	-	chr4.3:49481175-49481194	None:intergenic	35.0%
!	CAAGAGAAAGATAATGGCAA+AGG	-	chr4.3:49478054-49478073	None:intergenic	35.0%
!	CTGGGATGATTATTGAGTTT+TGG	+	chr4.3:49480547-49480566	MS.gene66625:intron	35.0%
!	GTGACTACTTGTTACACATT+CGG	+	chr4.3:49478700-49478719	MS.gene66625:intron	35.0%
!	TGACTACTTGTTACACATTC+GGG	+	chr4.3:49478701-49478720	MS.gene66625:intron	35.0%
!	TTTTAGTCTCCGAATATGCA+AGG	+	chr4.3:49478481-49478500	MS.gene66625:intron	35.0%
!!	AAAGGTAGTTTTGCAAGAAG+GGG	+	chr4.3:49478449-49478468	MS.gene66625:intron	35.0%
!!	AACGGAACATTTTAACACGA+GGG	+	chr4.3:49478610-49478629	MS.gene66625:intron	35.0%
!!	GTAAAGGTAGTTTTGCAAGA+AGG	+	chr4.3:49478447-49478466	MS.gene66625:intron	35.0%
!!	TAACGGAACATTTTAACACG+AGG	+	chr4.3:49478609-49478628	MS.gene66625:intron	35.0%
!!!	ACGAGGGACTATTTTGATTA+AGG	+	chr4.3:49478626-49478645	MS.gene66625:intron	35.0%
!!!	GTTTTTTGTGAAGGGTCTAT+TGG	+	chr4.3:49480846-49480865	MS.gene66625:CDS	35.0%
	AAAAATGGGGAAGAAGGAGA+TGG	-	chr4.3:49481223-49481242	None:intergenic	40.0%
	AAAAGGTTGACATGCCTGAT+TGG	+	chr4.3:49478144-49478163	MS.gene66625:CDS	40.0%
	AACATGCGATAACTGCATGA+AGG	+	chr4.3:49480426-49480445	MS.gene66625:intron	40.0%
	AATGTGAGGGTGAATGAAGA+TGG	+	chr4.3:49481415-49481434	MS.gene66625:CDS	40.0%
	ACATGCGATAACTGCATGAA+GGG	+	chr4.3:49480427-49480446	MS.gene66625:intron	40.0%
	ACCACGTAAGTGGTATTTGA+TGG	+	chr4.3:49479758-49479777	MS.gene66625:intron	40.0%
	AGAAAGTAGAGGTTGGACTT+TGG	+	chr4.3:49479177-49479196	MS.gene66625:intron	40.0%
	AGGACTACTCCTTGCATATT+CGG	-	chr4.3:49478493-49478512	None:intergenic	40.0%
	AGGGTTGTAAATAGAGGTCA+TGG	+	chr4.3:49478959-49478978	MS.gene66625:intron	40.0%
	AGTGAAGTGGAAGAGAAAGA+TGG	+	chr4.3:49481661-49481680	MS.gene66625:CDS	40.0%
	ATAGCTATCATTTGACGGAG+GGG	+	chr4.3:49479144-49479163	MS.gene66625:intron	40.0%
	CAATACCTGTTTCAAATCGG+AGG	+	chr4.3:49481547-49481566	MS.gene66625:CDS	40.0%
	CGTTGCGGTTACAAGTAAAA+GGG	-	chr4.3:49479551-49479570	None:intergenic	40.0%
	CTATGGTACTGTGGTGAAAT+GGG	-	chr4.3:49478100-49478119	None:intergenic	40.0%
	GAAATACAACCCTGCAACAA+AGG	+	chr4.3:49480752-49480771	MS.gene66625:CDS	40.0%
	GAAGAGAATAACCACGTAAG+TGG	+	chr4.3:49479748-49479767	MS.gene66625:intron	40.0%
	GAAGGAACCATCTTTGCTTA+AGG	-	chr4.3:49480823-49480842	None:intergenic	40.0%
	GACGGATAGCTAAAGAAGTA+AGG	-	chr4.3:49480884-49480903	None:intergenic	40.0%
	GCAGTTCTATTTATCAGAGG+AGG	+	chr4.3:49480320-49480339	MS.gene66625:CDS	40.0%
	GGCATTTCCTTAAGCAAAGA+TGG	+	chr4.3:49480813-49480832	MS.gene66625:CDS	40.0%
	GGTTAAAAGGAGAAAAGGCT+GGG	+	chr4.3:49481353-49481372	MS.gene66625:CDS	40.0%
	TCCATCAAATACCACTTACG+TGG	-	chr4.3:49479762-49479781	None:intergenic	40.0%
	TCGTTGCGGTTACAAGTAAA+AGG	-	chr4.3:49479552-49479571	None:intergenic	40.0%
	TGATAGAAGAGAACCAACAG+TGG	+	chr4.3:49479661-49479680	MS.gene66625:intron	40.0%
	TGCTTAAGGAAATGCCATTC+GGG	-	chr4.3:49480809-49480828	None:intergenic	40.0%
	TGGTTAAAAGGAGAAAAGGC+TGG	+	chr4.3:49481352-49481371	MS.gene66625:CDS	40.0%
	TGTCACCATCCTTGATATTG+TGG	+	chr4.3:49478991-49479010	MS.gene66625:intron	40.0%
	TTAACCTTACCTATTAGGCG+AGG	-	chr4.3:49478354-49478373	None:intergenic	40.0%
	TTCATTCACCCTCACATTGT+CGG	-	chr4.3:49481413-49481432	None:intergenic	40.0%
	TTGGCAAAAGTCTCTTGCAA+TGG	+	chr4.3:49479990-49480009	MS.gene66625:intron	40.0%
	TTGTCAAATCTGAGTCCCAA+AGG	-	chr4.3:49480136-49480155	None:intergenic	40.0%
	TTGTTAGAAATGCTGGTGGA+GGG	-	chr4.3:49479229-49479248	None:intergenic	40.0%
!	AGTGAAAGGAAGGTATAGAC+AGG	-	chr4.3:49479598-49479617	None:intergenic	40.0%
!	ATCAGGCATGTCAACCTTTT+TGG	-	chr4.3:49478144-49478163	None:intergenic	40.0%
!	CTCTTGTTTGCTCTATACTG+TGG	+	chr4.3:49478068-49478087	MS.gene66625:CDS	40.0%
!	GACTACTTGTTACACATTCG+GGG	+	chr4.3:49478702-49478721	MS.gene66625:intron	40.0%
!	GTGAAAGGAAGGTATAGACA+GGG	-	chr4.3:49479597-49479616	None:intergenic	40.0%
!	TCATGCAGCTGGTATTTTCT+GGG	+	chr4.3:49480709-49480728	MS.gene66625:CDS	40.0%
!	TTCATGCAGCTGGTATTTTC+TGG	+	chr4.3:49480708-49480727	MS.gene66625:CDS	40.0%
!!	AAATGGTGTCGCATTTGCTA+TGG	-	chr4.3:49480080-49480099	None:intergenic	40.0%
!!	AATGGTGTCGCATTTGCTAT+GGG	-	chr4.3:49480079-49480098	None:intergenic	40.0%
!!	GATGTCGATGTTGATTCAGA+AGG	+	chr4.3:49480277-49480296	MS.gene66625:CDS	40.0%
!!	GGAAATTTGCTATGGTACTG+TGG	-	chr4.3:49478109-49478128	None:intergenic	40.0%
!!	GTATTTTCTGGGGATGATAG+TGG	+	chr4.3:49480720-49480739	MS.gene66625:CDS	40.0%
!!	GTTCTGGAATGGACTTTCTT+GGG	+	chr4.3:49478313-49478332	MS.gene66625:CDS	40.0%
!!	TGAAGATGGTGATTTTTGGG+TGG	+	chr4.3:49481429-49481448	MS.gene66625:CDS	40.0%
!!	TGTTCTGGAATGGACTTTCT+TGG	+	chr4.3:49478312-49478331	MS.gene66625:CDS	40.0%
!!!	CTGATGGTAGAGTTTTGTTC+TGG	+	chr4.3:49478297-49478316	MS.gene66625:CDS	40.0%
!!!	GGTAGAGTTTTGTTCTGGAA+TGG	+	chr4.3:49478302-49478321	MS.gene66625:CDS	40.0%
!!!	GTTATGTAGCGGTTTGGTTT+TGG	+	chr4.3:49479077-49479096	MS.gene66625:intron	40.0%
	AACATCCCTCACTAGAACAG+CGG	-	chr4.3:49480781-49480800	None:intergenic	45.0%
	AGACTGAGCACATATGTGGA+AGG	+	chr4.3:49480110-49480129	MS.gene66625:CDS	45.0%
	AGATGTTGCTAAACCTCCCT+CGG	-	chr4.3:49480215-49480234	None:intergenic	45.0%
	AGCAACATCTCTTGCAACTG+AGG	+	chr4.3:49480225-49480244	MS.gene66625:CDS	45.0%
	AGCATTGTGTTTGACCCTCT+TGG	+	chr4.3:49478251-49478270	MS.gene66625:CDS	45.0%
	AGGCAAAGTTGGGTAGTTCA+CGG	+	chr4.3:49479797-49479816	MS.gene66625:intron	45.0%
	AGGGATGTTCAATTCCCGAA+TGG	+	chr4.3:49480792-49480811	MS.gene66625:CDS	45.0%
	AGTTTGATCAGTAGCCGCAA+GGG	+	chr4.3:49481136-49481155	MS.gene66625:intron	45.0%
	ATATCTTGGGCTGTTGAAGG+TGG	+	chr4.3:49480186-49480205	MS.gene66625:CDS	45.0%
	ATCATTTGACGGAGGGGTTT+GGG	+	chr4.3:49479150-49479169	MS.gene66625:intron	45.0%
	CAAATCGGAGGTAAGCAACA+TGG	+	chr4.3:49481559-49481578	MS.gene66625:CDS	45.0%
	CAATTGTCTCCGAGAGGATT+TGG	-	chr4.3:49481169-49481188	None:intergenic	45.0%
	CACATATGTGGAAGGCCTTT+GGG	+	chr4.3:49480118-49480137	MS.gene66625:CDS	45.0%
	CAGATATTGGAGGACAGTGA+GGG	+	chr4.3:49481619-49481638	MS.gene66625:CDS	45.0%
	CCACAATGTGACTGCAATTG+AGG	-	chr4.3:49479037-49479056	None:intergenic	45.0%
	CCATCAGCAACACCAGTATA+AGG	-	chr4.3:49478284-49478303	None:intergenic	45.0%
	CCTCAATTGCAGTCACATTG+TGG	+	chr4.3:49479034-49479053	MS.gene66625:intron	45.0%
	GAGATCTTAGCTATCCTACC+TGG	+	chr4.3:49481382-49481401	MS.gene66625:CDS	45.0%
	GATTTGGATACTGTCCCTTG+CGG	-	chr4.3:49481153-49481172	None:intergenic	45.0%
	GCTATGGTACTGTGGTGAAA+TGG	-	chr4.3:49478101-49478120	None:intergenic	45.0%
	GGACAGTATCCAAATCCTCT+CGG	+	chr4.3:49481157-49481176	MS.gene66625:intron	45.0%
	GTACAGGAATTTCATGCAGC+TGG	+	chr4.3:49480698-49480717	MS.gene66625:intron	45.0%
	GTCATGTCAGCTTAGTCAAG+TGG	+	chr4.3:49481109-49481128	MS.gene66625:intron	45.0%
	GTGAAGACTGAGCACATATG+TGG	+	chr4.3:49480106-49480125	MS.gene66625:CDS	45.0%
	GTTGTTAGAAATGCTGGTGG+AGG	-	chr4.3:49479230-49479249	None:intergenic	45.0%
	TACACCTCGCCTAATAGGTA+AGG	+	chr4.3:49478347-49478366	MS.gene66625:intron	45.0%
	TATAAGGTCCACGACCAAGA+GGG	-	chr4.3:49478268-49478287	None:intergenic	45.0%
	TATCATTTGACGGAGGGGTT+TGG	+	chr4.3:49479149-49479168	MS.gene66625:intron	45.0%
	TATCTTGGGCTGTTGAAGGT+GGG	+	chr4.3:49480187-49480206	MS.gene66625:CDS	45.0%
	TCATTCACCCTCACATTGTC+GGG	-	chr4.3:49481412-49481431	None:intergenic	45.0%
	TGCATATCTTGGGCTGTTGA+AGG	+	chr4.3:49480183-49480202	MS.gene66625:CDS	45.0%
	TGTTAGAGCTGTGAGTGAAG+TGG	+	chr4.3:49481648-49481667	MS.gene66625:CDS	45.0%
	TTAGGAACCTCAGACCAATC+AGG	-	chr4.3:49478161-49478180	None:intergenic	45.0%
	TTGCTTACACCTCGCCTAAT+AGG	+	chr4.3:49478342-49478361	MS.gene66625:CDS	45.0%
	TTTGTGAAGGGTCTATTGGC+AGG	+	chr4.3:49480850-49480869	MS.gene66625:CDS	45.0%
!	AAGGAAGGTATAGACAGGGA+AGG	-	chr4.3:49479593-49479612	None:intergenic	45.0%
!	AGACAGGGAAGGTACAAGTA+GGG	-	chr4.3:49479582-49479601	None:intergenic	45.0%
!	CATGCAGCTGGTATTTTCTG+GGG	+	chr4.3:49480710-49480729	MS.gene66625:CDS	45.0%
!	GAAGGTACAAGTAGGGCTTA+TGG	-	chr4.3:49479575-49479594	None:intergenic	45.0%
!	GCTTACCTCCGATTTGAAAC+AGG	-	chr4.3:49481555-49481574	None:intergenic	45.0%
!	TAGACAGGGAAGGTACAAGT+AGG	-	chr4.3:49479583-49479602	None:intergenic	45.0%
!!	CCTTATACTGGTGTTGCTGA+TGG	+	chr4.3:49478281-49478300	MS.gene66625:CDS	45.0%
!!	TTCTGGGGATGATAGTGGAA+AGG	+	chr4.3:49480725-49480744	MS.gene66625:CDS	45.0%
!!	AATTTAAAAAATATGAAATT+CGG	-	chr4.3:49480374-49480393	None:intergenic	5.0%
	ACAGCGGTTTCCTTTGTTGC+AGG	-	chr4.3:49480765-49480784	None:intergenic	50.0%
	AGGAAACCGCTGTTCTAGTG+AGG	+	chr4.3:49480772-49480791	MS.gene66625:CDS	50.0%
	AGGAGAAAAGGCTGGGACAT+CGG	+	chr4.3:49481360-49481379	MS.gene66625:CDS	50.0%
	AGTAGGGCTTATGGTCGTTG+CGG	-	chr4.3:49479566-49479585	None:intergenic	50.0%
	ATCTTGGGCTGTTGAAGGTG+GGG	+	chr4.3:49480188-49480207	MS.gene66625:CDS	50.0%
	CAGCGGTTTCCTTTGTTGCA+GGG	-	chr4.3:49480764-49480783	None:intergenic	50.0%
	CTCTTGCAACTGAGGCTGAA+GGG	+	chr4.3:49480233-49480252	MS.gene66625:CDS	50.0%
	CTTGGTCGTGGACCTTATAC+TGG	+	chr4.3:49478269-49478288	MS.gene66625:CDS	50.0%
	GAGTTTGATCAGTAGCCGCA+AGG	+	chr4.3:49481135-49481154	MS.gene66625:intron	50.0%
	GATGTTGCTAAACCTCCCTC+GGG	-	chr4.3:49480214-49480233	None:intergenic	50.0%
	GCACATATGTGGAAGGCCTT+TGG	+	chr4.3:49480117-49480136	MS.gene66625:CDS	50.0%
	GCAGATATTGGAGGACAGTG+AGG	+	chr4.3:49481618-49481637	MS.gene66625:CDS	50.0%
	GCAGGTTAAGTGCCCTCTTA+AGG	-	chr4.3:49480464-49480483	None:intergenic	50.0%
	GCTGGCATTCACTGTTCTGT+AGG	-	chr4.3:49479396-49479415	None:intergenic	50.0%
	GGAAACCGCTGTTCTAGTGA+GGG	+	chr4.3:49480773-49480792	MS.gene66625:CDS	50.0%
	GGGTCAAACACAATGCTCTC+AGG	-	chr4.3:49478248-49478267	None:intergenic	50.0%
	GTATAAGGTCCACGACCAAG+AGG	-	chr4.3:49478269-49478288	None:intergenic	50.0%
	GTTTGGGGGACAGAAAGTAG+AGG	+	chr4.3:49479166-49479185	MS.gene66625:intron	50.0%
	TCATTTGACGGAGGGGTTTG+GGG	+	chr4.3:49479151-49479170	MS.gene66625:intron	50.0%
	TCTCTTGCAACTGAGGCTGA+AGG	+	chr4.3:49480232-49480251	MS.gene66625:CDS	50.0%
	TCTTGCAACTGAGGCTGAAG+GGG	+	chr4.3:49480234-49480253	MS.gene66625:CDS	50.0%
	TGAAGGGTCTATTGGCAGGT+CGG	+	chr4.3:49480854-49480873	MS.gene66625:intron	50.0%
!	GGCTAGCTCAACTCACAGTT+AGG	+	chr4.3:49479818-49479837	MS.gene66625:intron	50.0%
!!	TGACATGCCTGATTGGTCTG+AGG	+	chr4.3:49478151-49478170	MS.gene66625:CDS	50.0%
!!!	TAGCGGTTTGGTTTTGGTCG+CGG	+	chr4.3:49479083-49479102	MS.gene66625:intron	50.0%
	CATTTGACGGAGGGGTTTGG+GGG	+	chr4.3:49479152-49479171	MS.gene66625:intron	55.0%
	GGCTTGTGACATGCCACTGT+TGG	-	chr4.3:49479677-49479696	None:intergenic	55.0%
	GGGGGACAGAAAGTAGAGGT+TGG	+	chr4.3:49479170-49479189	MS.gene66625:intron	55.0%
	GTGTTTGACCCTCTTGGTCG+TGG	+	chr4.3:49478257-49478276	MS.gene66625:CDS	55.0%
	TGGAGCTCCCGACAATGTGA+GGG	+	chr4.3:49481402-49481421	MS.gene66625:CDS	55.0%
	CATTGTCGGGAGCTCCAGGT+AGG	-	chr4.3:49481399-49481418	None:intergenic	60.0%
	CTCACATTGTCGGGAGCTCC+AGG	-	chr4.3:49481403-49481422	None:intergenic	60.0%
	CTGGAGCTCCCGACAATGTG+AGG	+	chr4.3:49481401-49481420	MS.gene66625:CDS	60.0%
	CTGTTGAAGGTGGGGCCCGA+GGG	+	chr4.3:49480196-49480215	MS.gene66625:CDS	65.0%
	GCTGTTGAAGGTGGGGCCCG+AGG	+	chr4.3:49480195-49480214	MS.gene66625:CDS	70.0%
	TTGAAGGTGGGGCCCGAGGG+AGG	+	chr4.3:49480199-49480218	MS.gene66625:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	49478035	49481738	49478035	ID=MS.gene66625
chr4.3	mRNA	49478035	49481738	49478035	ID=MS.gene66625.t1;Parent=MS.gene66625
chr4.3	exon	49478035	49478363	49478035	ID=MS.gene66625.t1.exon1;Parent=MS.gene66625.t1
chr4.3	CDS	49478035	49478363	49478035	ID=cds.MS.gene66625.t1;Parent=MS.gene66625.t1
chr4.3	exon	49480063	49480341	49480063	ID=MS.gene66625.t1.exon2;Parent=MS.gene66625.t1
chr4.3	CDS	49480063	49480341	49480063	ID=cds.MS.gene66625.t1;Parent=MS.gene66625.t1
chr4.3	exon	49480704	49480871	49480704	ID=MS.gene66625.t1.exon3;Parent=MS.gene66625.t1
chr4.3	CDS	49480704	49480871	49480704	ID=cds.MS.gene66625.t1;Parent=MS.gene66625.t1
chr4.3	exon	49481339	49481738	49481339	ID=MS.gene66625.t1.exon4;Parent=MS.gene66625.t1
chr4.3	CDS	49481339	49481738	49481339	ID=cds.MS.gene66625.t1;Parent=MS.gene66625.t1

Gene Sequence

>MS.gene66625

ATGACTCTTACTCAATCCTTTGCCATTATCTTTCTCTTGTTTGCTCTATACTGTGGTTTAGACCCATTTCACCACAGTACCATAGCAAATTTCCCTGAATTTGAATCCAAAAAGGTTGACATGCCTGATTGGTCTGAGGTTCCTAAAGACAGAGATGAACATAATTTGTTGCAAAAATCAGAGATAAGGTTTTTGAATCAAGTACAAGGACCTGAGAGCATTGTGTTTGACCCTCTTGGTCGTGGACCTTATACTGGTGTTGCTGATGGTAGAGTTTTGTTCTGGAATGGACTTTCTTGGGTTGACTTTGCTTACACCTCGCCTAATAGGTAAGGTTAAATCCTAATTCCTTCTCAGGATTTTTTGTTCATTCTTTAGGTTAGAAGCTTGCGTCTTACTATATACTCCTAAAGTAAAGGTAGTTTTGCAAGAAGGGGTAATAGTCATTTTAGTCTCCGAATATGCAAGGAGTAGTCCTTGATGTTGAAATAGTCCTTAACAATAACTCTTTTTATATAGAAACTGATTGACAATAAGTAAGTATATACCAAGGGATTGATTGATAGAACAGTATTAACGGAACATTTTAACACGAGGGACTATTTTGATTAAGGAAGTGCACAATCATGAACTATTTTAGAATTTTGATGCATTTAAGGACTATTGTGACTACTTGTTACACATTCGGGGATCAAAATGACTATTAACCCAAATAAAAATTGTACAAAATTATAAGTCACATGAAACTTTAATGTTATTTTCCTACAGGACCTTTTACTATTTATTATTGTCACTTCTAGTGAGTGATAATTCTGTAAAGTAATTCATAATTTCTGTTTCCCATATAAAATTGACTACTTTAATTTGTGTGAAATTGTCAAAGTGACTCTTATAATTTGAGATAGAGGTAATACTATATAGTTGAGGGTTGTAAATAGAGGTCATGGTAACAGTTGTGTCACCATCCTTGATATTGTGGAAAATTACGGTCAAATGTGGCCTCAATTGCAGTCACATTGTGGTTTTTGAAACATTAAAAACTGTTATGTAGCGGTTTGGTTTTGGTCGCGGAACCAACAATGAGTTTCAAGACACTTCATTAGTTGGAAATAGCTATCATTTGACGGAGGGGTTTGGGGGACAGAAAGTAGAGGTTGGACTTTGGTGTGATAAGAGCTTGTGAGTTCAAATCCCTCCACCAGCATTTCTAACAACTAATTACTAACATTTATCTTTAGAAAAATAGAAATAACTGTAGAATGAGTGATTCTTTGAGCAGTTGTATAATCAGGTATTTAACTCCATTCATATTCATAGATTAACATAAGGACTGTGAGTTTATTCTTTATTTTGAGATGCCTACAGAACAGTGAATGCCAGCAATTTGTTCAAGCCTTTTTCTTTTGTTGAATCTGATTTTCCTATCTTTTATCTTTTACTCAGTTTATTTTGGTCTTTTATAGTTAAAATATTCATTTTGCTCCTTTTATCTTTGCAATGTTATACTGATTCACCCTTTTACTTGTAACCGCAACGACCATAAGCCCTACTTGTACCTTCCCTGTCTATACCTTCCTTTCACTATATTTGTATCGAAAAAGAAAGAACAAAAGCTGCAGCAAAATTTGATAGAAGAGAACCAACAGTGGCATGTCACAAGCCCATGTCCAAACTTTGAAAATCATGAATCGTACTGAAATTAGGGATTTTTGAGAAGAGAATAACCACGTAAGTGGTATTTGATGGATATTTTGATTATCACAGGCAAAGTTGGGTAGTTCACGGCTAGCTCAACTCACAGTTAGGACACTTTAATGTAGGTAGTAAATGGATGAGTTTGTTCCGCATTGCTAAGATAAATAACCAAAATGAATCTTTTAAAAATAAATGACTAAAATTAATTTTGAGTAAAAGATAAAGGAAAAAAAAAACATATTTTAGTTTATTTTTAAGCTTTGGCAAAAGTCTCTTGCAATGGCATGATTAAATGGTAATGAATTTTCTTCTATATATCTATTTCAAAAACAGGTCACTATGTAATCCCATAGCAAATGCGACACCATTTAGTTATGTGAAGACTGAGCACATATGTGGAAGGCCTTTGGGACTCAGATTTGACAAGAAAACAGGCGAATTATACATTGCAGATGCATATCTTGGGCTGTTGAAGGTGGGGCCCGAGGGAGGTTTAGCAACATCTCTTGCAACTGAGGCTGAAGGGGTGCCTCTAAGATTTACTAACGATGTCGATGTTGATTCAGAAGGAAATGTTTATTTTACGGAAAGCAGTTCTATTTATCAGAGGAGGTATGATTCTGTTGTTAAACTTTCGGATGCCGAATTTCATATTTTTTAAATTTCCATCATTTTGTGTGTATGAAGTTCATTGGAAACATGCGATAACTGCATGAAGGGAATAATCATATCCTTAAGAGGGCACTTAACCTGCATATATAAGTTTCGTGGAAGTAATTTTGATGTGCAAGATGTGTTATTAAGGACAATGGTTTAACTGGGATGATTATTGAGTTTTGGCTCCTATATGTACTTTCTTTGCATAAGTCAAGCTTTTTATTTGCATTGCATGTACCTTAATGTTTTTAATTCTGAAATATTTATATTAAATTGTTTAATTTCATCGTCTCGTTTCTGACATAATTTGTGTACAGGAATTTCATGCAGCTGGTATTTTCTGGGGATGATAGTGGAAAGGTTTTGAAATACAACCCTGCAACAAAGGAAACCGCTGTTCTAGTGAGGGATGTTCAATTCCCGAATGGCATTTCCTTAAGCAAAGATGGTTCCTTCTTTGTTTTTTGTGAAGGGTCTATTGGCAGGTCGGTAAACCTTACTTCTTTAGCTATCCGTCTTTTTTTATTGGTGAATGTTAGTAAATTAATGTATTATGTTAGTTTCTTGGGTTTGAAATTTTATCTGTTATAGTAGGTTAACATATGTAGTATTTCCGTCTAAAGTGATATATTTTGATGAAAGAATTAAAAAACTAAAAAAGTATGTAACCTGCTAATCTAATCTCAATGTTTGCAAGTCCTATATTATATTGTCTGCGAGATGTCATGTCAGCTTAGTCAAGTGGTTAGAGTTTGATCAGTAGCCGCAAGGGACAGTATCCAAATCCTCTCGGAGACAATTGTAAAATGTTCAATAGTGACTTTAATTAATAACCATCTCCTTCTTCCCCATTTTTTTTTTTTACAAACAAGGTCCTATATTAAATTCCTATGTCTGAAATCATGCTAAAATAAATGTTACCTTTTCATTTCAATAATTTCTTATTGTGTAGATTACGTAAATATTGGTTAAAAGGAGAAAAGGCTGGGACATCGGAGATCTTAGCTATCCTACCTGGAGCTCCCGACAATGTGAGGGTGAATGAAGATGGTGATTTTTGGGTGGCACTTCACTGTAGAAGATCTATGTTTTCATACTATACTGGTTTATATCCAAGGATAAGGAAAGCTATACTTAAGCTTCCAATACCAACAAAGAATCAATACCTGTTTCAAATCGGAGGTAAGCAACATGGTGTGATTGTGAAGTATAGTCCTGAAGGTAAATTACTGCAGATATTGGAGGACAGTGAGGGAAAAGTTGTTAGAGCTGTGAGTGAAGTGGAAGAGAAAGATGGTCAACTTTGGATTGGAAGTGTTCTTATGCCTTTTATTGCAGTTTATAAACTATAA

Protein sequence

>MS.gene66625.t1

MTLTQSFAIIFLLFALYCGLDPFHHSTIANFPEFESKKVDMPDWSEVPKDRDEHNLLQKSEIRFLNQVQGPESIVFDPLGRGPYTGVADGRVLFWNGLSWVDFAYTSPNRSLCNPIANATPFSYVKTEHICGRPLGLRFDKKTGELYIADAYLGLLKVGPEGGLATSLATEAEGVPLRFTNDVDVDSEGNVYFTESSSIYQRRNFMQLVFSGDDSGKVLKYNPATKETAVLVRDVQFPNGISLSKDGSFFVFCEGSIGRLRKYWLKGEKAGTSEILAILPGAPDNVRVNEDGDFWVALHCRRSMFSYYTGLYPRIRKAILKLPIPTKNQYLFQIGGKQHGVIVKYSPEGKLLQILEDSEGKVVRAVSEVEEKDGQLWIGSVLMPFIAVYKL