AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059296

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059296.t1 MTR_2g087780 98.473 393 6 0 1 393 4 396 0.0 798
MS.gene059296.t1 MTR_4g050190 78.827 392 82 1 1 392 1 391 0.0 651
MS.gene059296.t1 MTR_7g090300 51.420 352 158 5 44 392 28 369 1.33e-118 349
MS.gene059296.t1 MTR_7g490350 51.136 352 159 5 44 392 28 369 1.96e-117 346
MS.gene059296.t1 MTR_2g099030 45.478 387 201 6 3 382 13 396 2.04e-109 327
MS.gene059296.t1 MTR_7g490330 49.263 339 122 4 57 392 34 325 8.90e-106 315
MS.gene059296.t1 MTR_5g091980 47.727 352 130 6 44 392 23 323 2.89e-101 303
MS.gene059296.t1 MTR_7g090310 43.544 333 180 6 66 391 54 385 3.58e-89 275
MS.gene059296.t1 MTR_7g090320 44.848 330 173 7 70 391 58 386 9.85e-89 273
MS.gene059296.t1 MTR_4g112670 37.313 335 177 7 60 390 29 334 2.99e-69 221
MS.gene059296.t1 MTR_4g112650 38.973 331 161 9 68 390 36 333 1.84e-64 209
MS.gene059296.t1 MTR_4g112630 36.667 330 161 6 68 390 36 324 8.33e-64 207
MS.gene059296.t1 MTR_2g058450 35.938 320 169 7 68 382 38 326 3.93e-58 193
MS.gene059296.t1 MTR_4g112620 31.804 327 152 6 68 390 40 299 3.35e-45 158
MS.gene059296.t1 MTR_8g074210 31.398 379 217 10 10 388 27 362 5.40e-42 151
MS.gene059296.t1 MTR_8g074170 30.789 380 216 9 10 387 27 361 6.31e-42 151
MS.gene059296.t1 MTR_8g074270 31.135 379 216 9 10 387 27 361 1.42e-41 150
MS.gene059296.t1 MTR_2g058410 34.375 256 140 4 136 389 1 230 1.53e-34 128
MS.gene059296.t1 MTR_0003s0530 33.663 202 109 3 183 384 7 183 9.91e-31 117
MS.gene059296.t1 MTR_2g042370 29.008 262 158 5 143 392 112 357 2.76e-30 119
MS.gene059296.t1 MTR_2g042420 29.762 252 168 7 143 392 105 349 5.01e-28 113
MS.gene059296.t1 MTR_2g042430 30.769 247 164 6 143 388 124 364 2.74e-27 111
MS.gene059296.t1 MTR_8g074320 40.310 129 73 2 133 258 95 222 3.45e-25 102
MS.gene059296.t1 MTR_1g075865 42.857 105 60 0 184 288 7 111 1.78e-24 97.8
MS.gene059296.t1 MTR_4g112840 38.542 96 59 0 205 300 56 151 2.41e-18 82.0
MS.gene059296.t1 MTR_2g058430 49.367 79 39 1 127 204 52 130 2.95e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059296.t1 AT1G08470 67.876 386 122 1 7 392 6 389 0.0 561
MS.gene059296.t1 AT5G22020 65.691 376 127 1 17 392 22 395 0.0 528
MS.gene059296.t1 AT5G22020 65.691 376 127 1 17 392 22 395 0.0 528
MS.gene059296.t1 AT5G22020 65.691 376 127 1 17 392 22 395 0.0 528
MS.gene059296.t1 AT3G57030 51.026 341 157 3 55 392 41 374 7.02e-122 358
MS.gene059296.t1 AT3G59530 44.051 395 202 6 1 389 13 394 2.30e-107 322
MS.gene059296.t1 AT3G59530 44.051 395 202 6 1 389 13 394 2.30e-107 322
MS.gene059296.t1 AT3G59530 44.051 395 202 6 1 389 13 394 2.30e-107 322
MS.gene059296.t1 AT3G57010 46.201 329 157 7 68 389 52 367 1.34e-93 285
MS.gene059296.t1 AT3G57020 45.897 329 158 7 68 389 51 366 2.31e-91 280
MS.gene059296.t1 AT2G41300 44.828 319 161 5 75 389 83 390 1.48e-90 278
MS.gene059296.t1 AT3G57020 44.681 329 148 7 68 389 51 352 4.30e-86 266
MS.gene059296.t1 AT2G41290 42.274 343 161 10 70 392 51 376 1.22e-79 249
MS.gene059296.t1 AT1G74010 38.138 333 160 12 66 392 33 325 4.20e-53 179
MS.gene059296.t1 AT1G74000 34.650 329 170 9 70 392 40 329 1.15e-50 173
MS.gene059296.t1 AT1G74020 34.545 330 171 11 69 392 37 327 2.84e-48 167
MS.gene059296.t1 AT3G51420 28.869 336 209 7 53 388 52 357 4.68e-36 135
MS.gene059296.t1 AT3G51440 32.959 267 155 6 53 318 52 295 1.04e-33 129
MS.gene059296.t1 AT3G51430 30.566 265 162 5 54 318 53 295 3.74e-32 125
MS.gene059296.t1 AT3G51450 30.189 265 163 5 54 318 53 295 9.97e-32 124
MS.gene059296.t1 AT3G51430 31.301 246 147 5 54 299 53 276 2.10e-31 123

Find 104 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTGCAGATGCATATTT+TGG 0.048195 2.2:-11390021 MS.gene059296:CDS
TTCATTCAGCTGATACTTTC+CGG 0.258773 2.2:-11389719 MS.gene059296:CDS
CTAAGCAAGTACTGGTTAAA+AGG 0.284476 2.2:-11389378 MS.gene059296:CDS
TTGGATAGGGCTTTGCTTGA+AGG 0.344074 2.2:+11390811 None:intergenic
GACATCTGTGGAAGGCCTTT+GGG 0.347957 2.2:-11390075 MS.gene059296:CDS
GGACATCTGTGGAAGGCCTT+TGG 0.358818 2.2:-11390076 MS.gene059296:CDS
TTGCTTAAGGAAATCCCATT+TGG 0.360210 2.2:+11389620 None:intergenic
CGGTAAACTTCTGCAAATAT+TGG 0.362581 2.2:-11389112 MS.gene059296:CDS
TGGGATAGGTAGCTTGAGTA+TGG 0.373674 2.2:+11389203 None:intergenic
ATTCAATACCTGCTACATAT+TGG 0.377715 2.2:-11389174 MS.gene059296:CDS
CAACGAAAATGGTGACCTTT+GGG 0.392894 2.2:-11389292 MS.gene059296:CDS
TTCGTTGACTCTCACATTGT+CGG 0.397838 2.2:+11389308 None:intergenic
CACAAGAACAGTGGTTTCCT+TGG 0.403080 2.2:+11389658 None:intergenic
CTGATGAAGGTGGGGCCTCA+AGG 0.404046 2.2:-11389997 MS.gene059296:CDS
TCAACGAAAATGGTGACCTT+TGG 0.415508 2.2:-11389293 MS.gene059296:CDS
ATCATGGTCTGAAGTTCCTC+TGG 0.416576 2.2:-11390750 MS.gene059296:CDS
CTCAGATTTGACAAGAAAAC+TGG 0.417721 2.2:-11390051 MS.gene059296:CDS
GGGTGGCTATCCATTGTAGA+AGG 0.420650 2.2:-11389272 MS.gene059296:CDS
TGCTCTCCGGTCCCTGCACT+TGG 0.422805 2.2:+11390678 None:intergenic
TGGATAGGGCTTTGCTTGAA+GGG 0.424691 2.2:+11390812 None:intergenic
GAAGGAACCATCCTTGCTTA+AGG 0.426528 2.2:+11389607 None:intergenic
AGTGGTGTTGCAGACGCCTT+AGG 0.430939 2.2:+11390117 None:intergenic
AGTGAGTGAAGTGGAGGAGA+AGG 0.431067 2.2:-11389061 MS.gene059296:CDS
AGAAACGTTCAATTTCCAAA+TGG 0.432809 2.2:-11389635 MS.gene059296:CDS
GAAACGTTCAATTTCCAAAT+GGG 0.434196 2.2:-11389634 MS.gene059296:CDS
CCATCAGCAACACCGGTGTA+AGG 0.434665 2.2:+11390629 None:intergenic
AGACAACTTGTTGAAGAAAT+CGG 0.446631 2.2:-11390717 MS.gene059296:CDS
AATGTGAGAGTCAACGAAAA+TGG 0.457761 2.2:-11389303 MS.gene059296:CDS
TTGCATACACCTCGCCCAAC+AGG 0.458425 2.2:-11390568 MS.gene059296:intron
GCAGGTATTGAATCCTTGTT+GGG 0.464036 2.2:+11389184 None:intergenic
ATTTGCAGAAGTTTACCGTC+AGG 0.467604 2.2:+11389117 None:intergenic
TCTGTAGGCTAAGCAAGTAC+TGG 0.469932 2.2:-11389386 MS.gene059296:intron
GAAGAGAAGCGTGACCTGTT+GGG 0.474973 2.2:+11390554 None:intergenic
ACAAAATTAACTTGCCATCA+TGG 0.475567 2.2:-11390766 MS.gene059296:CDS
CCTCAAAATCAGGGAAGCCT+TGG 0.484602 2.2:+11390792 None:intergenic
TATTGAATCCTTGTTGGGAT+AGG 0.492693 2.2:+11389189 None:intergenic
TGTACATATACCTTCTACAA+TGG 0.493786 2.2:+11389262 None:intergenic
ATACTTTCCGGTGATAATAG+TGG 0.498028 2.2:-11389707 MS.gene059296:CDS
AAGAACAGTGGTTTCCTTGG+TGG 0.500187 2.2:+11389661 None:intergenic
GAATCGAAGGCAATGCTCTC+CGG 0.502502 2.2:+11390665 None:intergenic
AGTGAAGTGGAGGAGAAGGA+TGG 0.504056 2.2:-11389057 MS.gene059296:CDS
ACATCATTAGTAAATCTAAA+CGG 0.507906 2.2:+11389934 None:intergenic
GGGATTTCCTTAAGCAAGGA+TGG 0.509307 2.2:-11389614 MS.gene059296:CDS
AGCAGGTATTGAATCCTTGT+TGG 0.510712 2.2:+11389183 None:intergenic
AAATCAGGGAAGCCTTGGAT+AGG 0.512244 2.2:+11390797 None:intergenic
GAAATCTTAGCAATCCTACC+TGG 0.521950 2.2:-11389336 MS.gene059296:CDS
GCCTTCGATTCTCATGGTCG+TGG 0.522772 2.2:-11390653 MS.gene059296:CDS
CTCTTGTTTGCTCTCTACTG+TGG 0.530078 2.2:-11390842 MS.gene059296:CDS
GGATAGGGCTTTGCTTGAAG+GGG 0.530593 2.2:+11390813 None:intergenic
AAATGGGATTTCCTTAAGCA+AGG 0.531261 2.2:-11389618 MS.gene059296:CDS
TAAAGCAGTGAGTGAAGTGG+AGG 0.531558 2.2:-11389067 MS.gene059296:CDS
GCAAATATTGGAGGACAATG+AGG 0.532562 2.2:-11389100 MS.gene059296:CDS
CGCAACATCTCTTGCAACCG+AGG 0.532626 2.2:-11389968 MS.gene059296:CDS
CATGTTTGTGAACCAAGTGC+AGG 0.540963 2.2:-11390690 MS.gene059296:CDS
AAATGATAAACCGCAATGAA+AGG 0.541109 2.2:+11389006 None:intergenic
TAAACTTCTGCAAATATTGG+AGG 0.544725 2.2:-11389109 MS.gene059296:CDS
AACCCTTCCACTATTATCAC+CGG 0.545323 2.2:+11389700 None:intergenic
CTCACATTGTCGGCAAAACC+AGG 0.545473 2.2:+11389318 None:intergenic
AGCATTGCCTTCGATTCTCA+TGG 0.549052 2.2:-11390659 MS.gene059296:CDS
ACACCGGTGTTGCTGATGGA+AGG 0.549231 2.2:-11390625 MS.gene059296:CDS
TGTTAAAGCAGTGAGTGAAG+TGG 0.551000 2.2:-11389070 MS.gene059296:CDS
AAACGGTACTCCTTCTGCCT+CGG 0.551126 2.2:+11389951 None:intergenic
AATCAGGGAAGCCTTGGATA+GGG 0.552957 2.2:+11390798 None:intergenic
AAGGATGGTAAACTCTGGAT+AGG 0.555622 2.2:-11389042 MS.gene059296:CDS
TCCTTCTGAAAATACAAAGA+AGG 0.555909 2.2:+11389589 None:intergenic
TGTGAACCAAGTGCAGGGAC+CGG 0.556419 2.2:-11390684 MS.gene059296:CDS
CATGGTCGTGGCCCTTACAC+CGG 0.556626 2.2:-11390641 MS.gene059296:CDS
TGGTTAAAAGGAGATAAAGC+TGG 0.558185 2.2:-11389366 MS.gene059296:CDS
CAATACCTGCTACATATTGG+AGG 0.561063 2.2:-11389171 MS.gene059296:CDS
GAAGCGTGACCTGTTGGGCG+AGG 0.565272 2.2:+11390559 None:intergenic
TTTGCAGAAGTTTACCGTCA+GGG 0.572710 2.2:+11389118 None:intergenic
GTCAGAACTATGCAATCCTA+AGG 0.574807 2.2:-11390133 MS.gene059296:CDS
CCTTACACCGGTGTTGCTGA+TGG 0.584330 2.2:-11390629 MS.gene059296:CDS
CATCAGCAACACCGGTGTAA+GGG 0.586543 2.2:+11390630 None:intergenic
GTCGTTAAGTATAGCCCTGA+CGG 0.591898 2.2:-11389132 MS.gene059296:CDS
TTTCCGGTGATAATAGTGGA+AGG 0.594855 2.2:-11389703 MS.gene059296:CDS
TTCCGGTGATAATAGTGGAA+GGG 0.595447 2.2:-11389702 MS.gene059296:CDS
GCCACGACCATGAGAATCGA+AGG 0.595727 2.2:+11390652 None:intergenic
CAAATATTGGAGGACAATGA+GGG 0.596205 2.2:-11389099 MS.gene059296:CDS
AATCCTTCCATCAGCAACAC+CGG 0.596968 2.2:+11390622 None:intergenic
TTGTCAAATCTGAGTCCCAA+AGG 0.599150 2.2:+11390060 None:intergenic
GATGTAGACATTGATACAGA+AGG 0.600609 2.2:-11389916 MS.gene059296:CDS
GAAATACAATTCTGCCACCA+AGG 0.601190 2.2:-11389675 MS.gene059296:CDS
TTTCAGAAGGAGTAATCGGA+AGG 0.603900 2.2:-11389577 MS.gene059296:intron
AGGAGAAGGATGGTAAACTC+TGG 0.608335 2.2:-11389047 MS.gene059296:CDS
TCTCTTGCAACCGAGGCAGA+AGG 0.613291 2.2:-11389961 MS.gene059296:CDS
TCAGTGTCAACATAACTAAG+TGG 0.615561 2.2:+11390099 None:intergenic
TTGTCTTTGTCATGATCCAG+AGG 0.617900 2.2:+11390734 None:intergenic
ATGAAGGTGGGGCCTCAAGG+TGG 0.624685 2.2:-11389994 MS.gene059296:CDS
ATGTAGACATTGATACAGAA+GGG 0.627148 2.2:-11389915 MS.gene059296:CDS
TTCAAGCAAAGCCCTATCCA+AGG 0.630560 2.2:-11390809 MS.gene059296:CDS
GCAGCACTAAATATCAGAGA+AGG 0.631433 2.2:-11389873 MS.gene059296:intron
ATGTTTGTGAACCAAGTGCA+GGG 0.633422 2.2:-11390689 MS.gene059296:CDS
AACGTTTCTCACAAGAACAG+TGG 0.635693 2.2:+11389649 None:intergenic
AGAGGAACTTCAGACCATGA+TGG 0.637623 2.2:+11390752 None:intergenic
ACACTGAGGACATCTGTGGA+AGG 0.638576 2.2:-11390083 MS.gene059296:CDS
TACAATGGATAGCCACCCAA+AGG 0.641529 2.2:+11389277 None:intergenic
CGAAAATGGTGACCTTTGGG+TGG 0.646638 2.2:-11389289 MS.gene059296:CDS
CATTGTCGGCAAAACCAGGT+AGG 0.653789 2.2:+11389322 None:intergenic
TCAAGCTACCTATCCCAACA+AGG 0.673835 2.2:-11389197 MS.gene059296:CDS
GTTGACACTGAGGACATCTG+TGG 0.686448 2.2:-11390087 MS.gene059296:CDS
TCATACATGACGTTAACTCG+AGG 0.698006 2.2:-11390881 None:intergenic
ACTTAGTTATGTTGACACTG+AGG 0.721000 2.2:-11390097 MS.gene059296:CDS
GATGTTGCGAAACCACCTTG+AGG 0.756488 2.2:+11389982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTCTAACTTAATGT+TGG - chr2.2:11389502-11389521 MS.gene059296:intron 15.0%
!! AAAATGTCGATAATTTCAAA+AGG + chr2.2:11390060-11390079 None:intergenic 20.0%
!! ACATCATTAGTAAATCTAAA+CGG + chr2.2:11389943-11389962 None:intergenic 20.0%
!! TCAATAGTTATCAAATTCAT+AGG - chr2.2:11389418-11389437 MS.gene059296:intron 20.0%
!!! AAGATTTTTCTTAAGATGAA+TGG - chr2.2:11389649-11389668 MS.gene059296:CDS 20.0%
!!! TTTAAGTTGGAAAAGTTATA+AGG + chr2.2:11389349-11389368 None:intergenic 20.0%
! AAATAACAAAACAAGTTTGG+CGG - chr2.2:11390089-11390108 MS.gene059296:CDS 25.0%
! ATCTTAAGAAAAATCTTCCT+CGG + chr2.2:11389646-11389665 None:intergenic 25.0%
! GAGAAATAACAAAACAAGTT+TGG - chr2.2:11390086-11390105 MS.gene059296:CDS 25.0%
! TAAGATGAATGGATAATTTG+TGG - chr2.2:11389660-11389679 MS.gene059296:CDS 25.0%
!!! AATCTTTTTTCTTGTTAACG+CGG - chr2.2:11390032-11390051 MS.gene059296:CDS 25.0%
AAATGATAAACCGCAATGAA+AGG + chr2.2:11390871-11390890 None:intergenic 30.0%
AATAACAAAACAAGTTTGGC+GGG - chr2.2:11390090-11390109 MS.gene059296:CDS 30.0%
AGAAACGTTCAATTTCCAAA+TGG - chr2.2:11390239-11390258 MS.gene059296:intron 30.0%
ATGTAGACATTGATACAGAA+GGG - chr2.2:11389959-11389978 MS.gene059296:CDS 30.0%
ATTCAATACCTGCTACATAT+TGG - chr2.2:11390700-11390719 MS.gene059296:CDS 30.0%
CTAAACATATTGTGTCAGAA+TGG + chr2.2:11390406-11390425 None:intergenic 30.0%
CTTGTACTAAGCATTTAAGT+TGG + chr2.2:11389362-11389381 None:intergenic 30.0%
GAAACGTTCAATTTCCAAAT+GGG - chr2.2:11390240-11390259 MS.gene059296:intron 30.0%
TAAACTTCTGCAAATATTGG+AGG - chr2.2:11390765-11390784 MS.gene059296:CDS 30.0%
TGTACATATACCTTCTACAA+TGG + chr2.2:11390615-11390634 None:intergenic 30.0%
! ACATTGCAGATGCATATTTT+GGG - chr2.2:11389854-11389873 MS.gene059296:intron 30.0%
! AGTATGGCTTTTCTAATCTT+TGG + chr2.2:11390658-11390677 None:intergenic 30.0%
! GTATGGCTTTTCTAATCTTT+GGG + chr2.2:11390657-11390676 None:intergenic 30.0%
! GTATTTTCAGAAGGAGTAAT+CGG - chr2.2:11390293-11390312 MS.gene059296:intron 30.0%
! TACATTGCAGATGCATATTT+TGG - chr2.2:11389853-11389872 MS.gene059296:intron 30.0%
! TCCTTCTGAAAATACAAAGA+AGG + chr2.2:11390288-11390307 None:intergenic 30.0%
! TCCTTCTTTGTATTTTCAGA+AGG - chr2.2:11390284-11390303 MS.gene059296:intron 30.0%
!! ACAAAATTAACTTGCCATCA+TGG - chr2.2:11389108-11389127 MS.gene059296:CDS 30.0%
!! AGACAACTTGTTGAAGAAAT+CGG - chr2.2:11389157-11389176 MS.gene059296:CDS 30.0%
!! CTGATGGAAGGATTTTATTT+TGG - chr2.2:11389261-11389280 MS.gene059296:CDS 30.0%
!!! GGAAGGATTTTATTTTGGAA+CGG - chr2.2:11389266-11389285 MS.gene059296:CDS 30.0%
!!! TCTGTAACTTTTTCACAGAT+CGG + chr2.2:11389593-11389612 None:intergenic 30.0%
AAATGGGATTTCCTTAAGCA+AGG - chr2.2:11390256-11390275 MS.gene059296:intron 35.0%
AATAGTGCAAGCCTATTAGT+AGG - chr2.2:11389456-11389475 MS.gene059296:intron 35.0%
AATGTGAGAGTCAACGAAAA+TGG - chr2.2:11390571-11390590 MS.gene059296:CDS 35.0%
ACTTAGTTATGTTGACACTG+AGG - chr2.2:11389777-11389796 MS.gene059296:intron 35.0%
ATACTTTCCGGTGATAATAG+TGG - chr2.2:11390167-11390186 MS.gene059296:intron 35.0%
ATAGTGCAAGCCTATTAGTA+GGG - chr2.2:11389457-11389476 MS.gene059296:intron 35.0%
CAAATATTGGAGGACAATGA+GGG - chr2.2:11390775-11390794 MS.gene059296:CDS 35.0%
CACATATATCCCCTACTAAT+AGG + chr2.2:11389470-11389489 None:intergenic 35.0%
CGGTAAACTTCTGCAAATAT+TGG - chr2.2:11390762-11390781 MS.gene059296:CDS 35.0%
CTATTAGTAGGGGATATATG+TGG - chr2.2:11389468-11389487 MS.gene059296:intron 35.0%
CTCAGATTTGACAAGAAAAC+TGG - chr2.2:11389823-11389842 MS.gene059296:intron 35.0%
CTGACCTGTATTCAGAAATA+AGG + chr2.2:11389726-11389745 None:intergenic 35.0%
GATGTAGACATTGATACAGA+AGG - chr2.2:11389958-11389977 MS.gene059296:CDS 35.0%
GTCAGAATGGCAAAATATGT+TGG + chr2.2:11390393-11390412 None:intergenic 35.0%
TATTGAATCCTTGTTGGGAT+AGG + chr2.2:11390688-11390707 None:intergenic 35.0%
TCAGTGTCAACATAACTAAG+TGG + chr2.2:11389778-11389797 None:intergenic 35.0%
TGCTTAGCCTACAGAAAAAA+CGG + chr2.2:11390483-11390502 None:intergenic 35.0%
TGGTTAAAAGGAGATAAAGC+TGG - chr2.2:11390508-11390527 MS.gene059296:intron 35.0%
TTCATTCAGCTGATACTTTC+CGG - chr2.2:11390155-11390174 MS.gene059296:intron 35.0%
TTGCATCATTAGTGTATCGA+CGG + chr2.2:11390351-11390370 None:intergenic 35.0%
TTGCTTAAGGAAATCCCATT+TGG + chr2.2:11390257-11390276 None:intergenic 35.0%
! ATTAGTGTATCGACGGAAAA+AGG + chr2.2:11390344-11390363 None:intergenic 35.0%
! ATTTTGTGCACCTCAAAATC+AGG + chr2.2:11389095-11389114 None:intergenic 35.0%
! TTAGTGTATCGACGGAAAAA+GGG + chr2.2:11390343-11390362 None:intergenic 35.0%
! TTTTGTGCACCTCAAAATCA+GGG + chr2.2:11389094-11389113 None:intergenic 35.0%
!! CTAAGCAAGTACTGGTTAAA+AGG - chr2.2:11390496-11390515 MS.gene059296:intron 35.0%
!!! TGTTTTGATGCCTTTCATTG+CGG - chr2.2:11390858-11390877 MS.gene059296:CDS 35.0%
!!! TTCAAGTCCGTTTTTTCTGT+AGG - chr2.2:11390473-11390492 MS.gene059296:intron 35.0%
AACCCTTCCACTATTATCAC+CGG + chr2.2:11390177-11390196 None:intergenic 40.0%
AACGTTTCTCACAAGAACAG+TGG + chr2.2:11390228-11390247 None:intergenic 40.0%
AAGGATGGTAAACTCTGGAT+AGG - chr2.2:11390832-11390851 MS.gene059296:CDS 40.0%
ATGTTTGTGAACCAAGTGCA+GGG - chr2.2:11389185-11389204 MS.gene059296:CDS 40.0%
ATTTGCAGAAGTTTACCGTC+AGG + chr2.2:11390760-11390779 None:intergenic 40.0%
CAACGAAAATGGTGACCTTT+GGG - chr2.2:11390582-11390601 MS.gene059296:CDS 40.0%
CAATACCTGCTACATATTGG+AGG - chr2.2:11390703-11390722 MS.gene059296:CDS 40.0%
GAAATACAATTCTGCCACCA+AGG - chr2.2:11390199-11390218 MS.gene059296:intron 40.0%
GAAATCTTAGCAATCCTACC+TGG - chr2.2:11390538-11390557 MS.gene059296:intron 40.0%
GCAAATATTGGAGGACAATG+AGG - chr2.2:11390774-11390793 MS.gene059296:CDS 40.0%
GCAGCACTAAATATCAGAGA+AGG - chr2.2:11390001-11390020 MS.gene059296:CDS 40.0%
GTCAGAACTATGCAATCCTA+AGG - chr2.2:11389741-11389760 MS.gene059296:intron 40.0%
TAGTGCAAGCCTATTAGTAG+GGG - chr2.2:11389458-11389477 MS.gene059296:intron 40.0%
TCAACGAAAATGGTGACCTT+TGG - chr2.2:11390581-11390600 MS.gene059296:CDS 40.0%
TCTGATGTCATTCTACATGC+AGG - chr2.2:11390129-11390148 MS.gene059296:CDS 40.0%
TGTTAAAGCAGTGAGTGAAG+TGG - chr2.2:11390804-11390823 MS.gene059296:CDS 40.0%
TTGTCAAATCTGAGTCCCAA+AGG + chr2.2:11389817-11389836 None:intergenic 40.0%
TTGTCTTTGTCATGATCCAG+AGG + chr2.2:11389143-11389162 None:intergenic 40.0%
TTTCAGAAGGAGTAATCGGA+AGG - chr2.2:11390297-11390316 MS.gene059296:intron 40.0%
TTTGCAGAAGTTTACCGTCA+GGG + chr2.2:11390759-11390778 None:intergenic 40.0%
! TTCCGGTGATAATAGTGGAA+GGG - chr2.2:11390172-11390191 MS.gene059296:intron 40.0%
! TTTCCGGTGATAATAGTGGA+AGG - chr2.2:11390171-11390190 MS.gene059296:intron 40.0%
! TTTTGCCTCCAATATGTAGC+AGG + chr2.2:11390711-11390730 None:intergenic 40.0%
!! AGCAGGTATTGAATCCTTGT+TGG + chr2.2:11390694-11390713 None:intergenic 40.0%
!! ATATTTTGGGCTGATGAAGG+TGG - chr2.2:11389867-11389886 MS.gene059296:intron 40.0%
!! CGCACCTTATTTCTGAATAC+AGG - chr2.2:11389719-11389738 MS.gene059296:CDS 40.0%
!! GCAGGTATTGAATCCTTGTT+GGG + chr2.2:11390693-11390712 None:intergenic 40.0%
!! TATTTTGGGCTGATGAAGGT+GGG - chr2.2:11389868-11389887 MS.gene059296:intron 40.0%
!! TGCATATTTTGGGCTGATGA+AGG - chr2.2:11389864-11389883 MS.gene059296:intron 40.0%
!! TTCGTTGACTCTCACATTGT+CGG + chr2.2:11390569-11390588 None:intergenic 40.0%
!!! TATTTTGGAACGGACTGTCT+TGG - chr2.2:11389276-11389295 MS.gene059296:CDS 40.0%
AAATCAGGGAAGCCTTGGAT+AGG + chr2.2:11389080-11389099 None:intergenic 45.0%
AAGAACAGTGGTTTCCTTGG+TGG + chr2.2:11390216-11390235 None:intergenic 45.0%
AATCAGGGAAGCCTTGGATA+GGG + chr2.2:11389079-11389098 None:intergenic 45.0%
AATCCTTCCATCAGCAACAC+CGG + chr2.2:11389255-11389274 None:intergenic 45.0%
AGAGGAACTTCAGACCATGA+TGG + chr2.2:11389125-11389144 None:intergenic 45.0%
AGCATTGCCTTCGATTCTCA+TGG - chr2.2:11389215-11389234 MS.gene059296:CDS 45.0%
AGGAGAAGGATGGTAAACTC+TGG - chr2.2:11390827-11390846 MS.gene059296:CDS 45.0%
CACAAGAACAGTGGTTTCCT+TGG + chr2.2:11390219-11390238 None:intergenic 45.0%
CATGTTTGTGAACCAAGTGC+AGG - chr2.2:11389184-11389203 MS.gene059296:CDS 45.0%
GAAGGAACCATCCTTGCTTA+AGG + chr2.2:11390270-11390289 None:intergenic 45.0%
GGGATTTCCTTAAGCAAGGA+TGG - chr2.2:11390260-11390279 MS.gene059296:intron 45.0%
GTCGTTAAGTATAGCCCTGA+CGG - chr2.2:11390742-11390761 MS.gene059296:CDS 45.0%
TAAAGCAGTGAGTGAAGTGG+AGG - chr2.2:11390807-11390826 MS.gene059296:CDS 45.0%
TACAATGGATAGCCACCCAA+AGG + chr2.2:11390600-11390619 None:intergenic 45.0%
TCAAGCTACCTATCCCAACA+AGG - chr2.2:11390677-11390696 MS.gene059296:CDS 45.0%
TCTGTAGGCTAAGCAAGTAC+TGG - chr2.2:11390488-11390507 MS.gene059296:intron 45.0%
TGGATAGGGCTTTGCTTGAA+GGG + chr2.2:11389065-11389084 None:intergenic 45.0%
TGGGATAGGTAGCTTGAGTA+TGG + chr2.2:11390674-11390693 None:intergenic 45.0%
TTCAAGCAAAGCCCTATCCA+AGG - chr2.2:11389065-11389084 MS.gene059296:CDS 45.0%
TTGGATAGGGCTTTGCTTGA+AGG + chr2.2:11389066-11389085 None:intergenic 45.0%
! ATCATGGTCTGAAGTTCCTC+TGG - chr2.2:11389124-11389143 MS.gene059296:CDS 45.0%
! ATTTTGGGCTGATGAAGGTG+GGG - chr2.2:11389869-11389888 MS.gene059296:intron 45.0%
! CTCTTGTTTGCTCTCTACTG+TGG - chr2.2:11389032-11389051 MS.gene059296:CDS 45.0%
AAACGGTACTCCTTCTGCCT+CGG + chr2.2:11389926-11389945 None:intergenic 50.0%
ACACTGAGGACATCTGTGGA+AGG - chr2.2:11389791-11389810 MS.gene059296:intron 50.0%
AGTGAAGTGGAGGAGAAGGA+TGG - chr2.2:11390817-11390836 MS.gene059296:CDS 50.0%
AGTGAGTGAAGTGGAGGAGA+AGG - chr2.2:11390813-11390832 MS.gene059296:CDS 50.0%
ATTCTGCTACATCGCATCCG+AGG - chr2.2:11389626-11389645 MS.gene059296:CDS 50.0%
CATCAGCAACACCGGTGTAA+GGG + chr2.2:11389247-11389266 None:intergenic 50.0%
CATTGTCGGCAAAACCAGGT+AGG + chr2.2:11390555-11390574 None:intergenic 50.0%
CCTCAAAATCAGGGAAGCCT+TGG + chr2.2:11389085-11389104 None:intergenic 50.0%
CGAAAATGGTGACCTTTGGG+TGG - chr2.2:11390585-11390604 MS.gene059296:CDS 50.0%
CTCACATTGTCGGCAAAACC+AGG + chr2.2:11390559-11390578 None:intergenic 50.0%
GAATCGAAGGCAATGCTCTC+CGG + chr2.2:11389212-11389231 None:intergenic 50.0%
GACATCTGTGGAAGGCCTTT+GGG - chr2.2:11389799-11389818 MS.gene059296:intron 50.0%
GATGTTGCGAAACCACCTTG+AGG + chr2.2:11389895-11389914 None:intergenic 50.0%
GGATAGGGCTTTGCTTGAAG+GGG + chr2.2:11389064-11389083 None:intergenic 50.0%
GGGTGGCTATCCATTGTAGA+AGG - chr2.2:11390602-11390621 MS.gene059296:CDS 50.0%
GTTGACACTGAGGACATCTG+TGG - chr2.2:11389787-11389806 MS.gene059296:intron 50.0%
! AGAAGAGAAGCGTGACCTGT+TGG + chr2.2:11389324-11389343 None:intergenic 50.0%
! CCAAGGCTTCCCTGATTTTG+AGG - chr2.2:11389082-11389101 MS.gene059296:CDS 50.0%
! GAAGAGAAGCGTGACCTGTT+GGG + chr2.2:11389323-11389342 None:intergenic 50.0%
CCATCAGCAACACCGGTGTA+AGG + chr2.2:11389248-11389267 None:intergenic 55.0%
CGCAACATCTCTTGCAACCG+AGG - chr2.2:11389906-11389925 MS.gene059296:CDS 55.0%
GCCACGACCATGAGAATCGA+AGG + chr2.2:11389225-11389244 None:intergenic 55.0%
GCCTTCGATTCTCATGGTCG+TGG - chr2.2:11389221-11389240 MS.gene059296:CDS 55.0%
GGACATCTGTGGAAGGCCTT+TGG - chr2.2:11389798-11389817 MS.gene059296:intron 55.0%
TCTCTTGCAACCGAGGCAGA+AGG - chr2.2:11389913-11389932 MS.gene059296:CDS 55.0%
TGTGAACCAAGTGCAGGGAC+CGG - chr2.2:11389190-11389209 MS.gene059296:CDS 55.0%
TTGCATACACCTCGCCCAAC+AGG - chr2.2:11389306-11389325 MS.gene059296:CDS 55.0%
!! ACACCGGTGTTGCTGATGGA+AGG - chr2.2:11389249-11389268 MS.gene059296:CDS 55.0%
!! AGTGGTGTTGCAGACGCCTT+AGG + chr2.2:11389760-11389779 None:intergenic 55.0%
!! CCTTACACCGGTGTTGCTGA+TGG - chr2.2:11389245-11389264 MS.gene059296:CDS 55.0%
ATGAAGGTGGGGCCTCAAGG+TGG - chr2.2:11389880-11389899 MS.gene059296:CDS 60.0%
CATGGTCGTGGCCCTTACAC+CGG - chr2.2:11389233-11389252 MS.gene059296:CDS 60.0%
CTGATGAAGGTGGGGCCTCA+AGG - chr2.2:11389877-11389896 MS.gene059296:CDS 60.0%
GAAGCGTGACCTGTTGGGCG+AGG + chr2.2:11389318-11389337 None:intergenic 65.0%
TGCTCTCCGGTCCCTGCACT+TGG + chr2.2:11389199-11389218 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11388999 11390897 11388999 ID=MS.gene059296
chr2.2 mRNA 11388999 11390897 11388999 ID=MS.gene059296.t1;Parent=MS.gene059296
chr2.2 exon 11390569 11390897 11390569 ID=MS.gene059296.t1.exon1;Parent=MS.gene059296.t1
chr2.2 CDS 11390569 11390897 11390569 ID=cds.MS.gene059296.t1;Parent=MS.gene059296.t1
chr2.2 exon 11389874 11390155 11389874 ID=MS.gene059296.t1.exon2;Parent=MS.gene059296.t1
chr2.2 CDS 11389874 11390155 11389874 ID=cds.MS.gene059296.t1;Parent=MS.gene059296.t1
chr2.2 exon 11389578 11389745 11389578 ID=MS.gene059296.t1.exon3;Parent=MS.gene059296.t1
chr2.2 CDS 11389578 11389745 11389578 ID=cds.MS.gene059296.t1;Parent=MS.gene059296.t1
chr2.2 exon 11388999 11389401 11388999 ID=MS.gene059296.t1.exon4;Parent=MS.gene059296.t1
chr2.2 CDS 11388999 11389401 11388999 ID=cds.MS.gene059296.t1;Parent=MS.gene059296.t1
Gene Sequence

>MS.gene059296

ATGACGTTAACTCGAGGACTCGCTATTGTAATTCTCTTGTTTGCTCTCTACTGTGGATTAGACCCCTTCAAGCAAAGCCCTATCCAAGGCTTCCCTGATTTTGAGGTGCACAAAATTAACTTGCCATCATGGTCTGAAGTTCCTCTGGATCATGACAAAGACAACTTGTTGAAGAAATCGGAGCTCATGTTTGTGAACCAAGTGCAGGGACCGGAGAGCATTGCCTTCGATTCTCATGGTCGTGGCCCTTACACCGGTGTTGCTGATGGAAGGATTTTATTTTGGAACGGACTGTCTTGGATTGATTTTGCATACACCTCGCCCAACAGGTCACGCTTCTCTTCTTTCCTTATAACTTTTCCAACTTAAATGCTTAGTACAAGATAATTTTGTGATTTTGTTATCTTTCTGCATTACTGTCAATAGTTATCAAATTCATAGGTTATAGTCATATTCTAATAGTGCAAGCCTATTAGTAGGGGATATATGTGGCTAAAAGCTACTATAATTTCTAACTTAATGTTGGAAAACTGCTTCATGCAAACTTTTTAGCTCATACGCTCATACTATTAAAGATTTCATGCTCTTGCACCGATCTGTGAAAAAGTTACAGAAAATATGTGTGAAATTCTGCTACATCGCATCCGAGGAAGATTTTTCTTAAGATGAATGGATAATTTGTGGCAATGTAACTTTGCAATATCGTGTGATAATATTTCTCGCACCTTATTTCTGAATACAGGTCAGAACTATGCAATCCTAAGGCGTCTGCAACACCACTTAGTTATGTTGACACTGAGGACATCTGTGGAAGGCCTTTGGGACTCAGATTTGACAAGAAAACTGGTGATTTATACATTGCAGATGCATATTTTGGGCTGATGAAGGTGGGGCCTCAAGGTGGTTTCGCAACATCTCTTGCAACCGAGGCAGAAGGAGTACCGTTTAGATTTACTAATGATGTAGACATTGATACAGAAGGGAACGTTTACTTCACAGATAGCAGCACTAAATATCAGAGAAGGTTGTTAGTAATCTTTTTTCTTGTTAACGCGGCACCTTTTGAAATTATCGACATTTTAAATATGAGAAATAACAAAACAAGTTTGGCGGGTTTGTTGATGCTGACTTCTGATGTCATTCTACATGCAGGAATTTCATTCAGCTGATACTTTCCGGTGATAATAGTGGAAGGGTTTTGAAATACAATTCTGCCACCAAGGAAACCACTGTTCTTGTGAGAAACGTTCAATTTCCAAATGGGATTTCCTTAAGCAAGGATGGTTCCTTCTTTGTATTTTCAGAAGGAGTAATCGGAAGGTGTGTGAATAATCAACAAAACCCTTTTTCCGTCGATACACTAATGATGCAAACAAGTTTTACAAAGACGTCCAACATATTTTGCCATTCTGACACAATATGTTTAGAAAGTAATTTGTTTGTAAAGTTATTAATCTTTTCGTTTATTACTATATTCAAGTCCGTTTTTTCTGTAGGCTAAGCAAGTACTGGTTAAAAGGAGATAAAGCTGGAACTTTAGAAATCTTAGCAATCCTACCTGGTTTTGCCGACAATGTGAGAGTCAACGAAAATGGTGACCTTTGGGTGGCTATCCATTGTAGAAGGTATATGTACAGTTACATAAATGCTCTCTACCCAAAGATTAGAAAAGCCATACTCAAGCTACCTATCCCAACAAGGATTCAATACCTGCTACATATTGGAGGCAAAATGCATGCAGCAGTCGTTAAGTATAGCCCTGACGGTAAACTTCTGCAAATATTGGAGGACAATGAGGGAAAAGTTGTTAAAGCAGTGAGTGAAGTGGAGGAGAAGGATGGTAAACTCTGGATAGGAAGTGTTTTGATGCCTTTCATTGCGGTTTATCATTTGACATGA
Protein sequence

>MS.gene059296.t1

MTLTRGLAIVILLFALYCGLDPFKQSPIQGFPDFEVHKINLPSWSEVPLDHDKDNLLKKSELMFVNQVQGPESIAFDSHGRGPYTGVADGRILFWNGLSWIDFAYTSPNRSELCNPKASATPLSYVDTEDICGRPLGLRFDKKTGDLYIADAYFGLMKVGPQGGFATSLATEAEGVPFRFTNDVDIDTEGNVYFTDSSTKYQRRNFIQLILSGDNSGRVLKYNSATKETTVLVRNVQFPNGISLSKDGSFFVFSEGVIGRLSKYWLKGDKAGTLEILAILPGFADNVRVNENGDLWVAIHCRRYMYSYINALYPKIRKAILKLPIPTRIQYLLHIGGKMHAAVVKYSPDGKLLQILEDNEGKVVKAVSEVEEKDGKLWIGSVLMPFIAVYHLT