Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014230.t1 | XP_003604013.1 | 94.4 | 693 | 26 | 2 | 1 | 682 | 1 | 691 | 0.00E+00 | 1155.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014230.t1 | Q9T0J6 | 59.1 | 692 | 230 | 9 | 8 | 682 | 36 | 691 | 2.2e-229 | 796.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014230.t1 | G7J7T8 | 94.4 | 693 | 26 | 2 | 1 | 682 | 1 | 691 | 0.0e+00 | 1155.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014230.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036254 | MS.gene014230 | PPI |
| MS.gene40016 | MS.gene014230 | PPI |
| MS.gene004699 | MS.gene014230 | PPI |
| MS.gene32083 | MS.gene014230 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014230.t1 | MTR_3g117580 | 95.382 | 693 | 19 | 2 | 1 | 682 | 1 | 691 | 0.0 | 1358 |
| MS.gene014230.t1 | MTR_8g067420 | 28.000 | 250 | 157 | 7 | 325 | 558 | 1 | 243 | 7.15e-21 | 94.4 |
| MS.gene014230.t1 | MTR_8g067420 | 27.193 | 228 | 144 | 6 | 325 | 536 | 1 | 222 | 7.86e-18 | 84.3 |
| MS.gene014230.t1 | MTR_8g067420 | 27.193 | 228 | 144 | 6 | 325 | 536 | 1 | 222 | 1.43e-17 | 83.6 |
| MS.gene014230.t1 | MTR_4g094905 | 28.502 | 207 | 126 | 8 | 328 | 525 | 39 | 232 | 1.01e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014230.t1 | AT4G38890 | 62.774 | 685 | 216 | 11 | 8 | 682 | 36 | 691 | 0.0 | 865 |
| MS.gene014230.t1 | AT3G49640 | 28.846 | 312 | 180 | 12 | 325 | 616 | 1 | 290 | 1.11e-26 | 111 |
| MS.gene014230.t1 | AT3G49640 | 28.846 | 312 | 180 | 12 | 325 | 616 | 1 | 290 | 4.89e-26 | 110 |
| MS.gene014230.t1 | AT3G49640 | 31.034 | 232 | 130 | 7 | 325 | 536 | 1 | 222 | 2.61e-21 | 94.4 |
| MS.gene014230.t1 | AT3G49640 | 30.045 | 223 | 129 | 9 | 400 | 616 | 50 | 251 | 5.36e-20 | 90.9 |
| MS.gene014230.t1 | AT3G49640 | 30.045 | 223 | 129 | 9 | 400 | 616 | 50 | 251 | 1.69e-19 | 90.1 |
| MS.gene014230.t1 | AT5G67220 | 27.885 | 208 | 142 | 4 | 328 | 533 | 87 | 288 | 1.83e-16 | 82.8 |
Find 160 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTACTTGCAAATTATT+AGG | 0.146154 | 3.3:-95454006 | None:intergenic |
| CATTCATCTGAAGATTTATT+TGG | 0.158032 | 3.3:+95453386 | MS.gene014230:CDS |
| AAAAGAAGCTTATTGATTTC+AGG | 0.171029 | 3.3:+95452817 | MS.gene014230:CDS |
| CCACTACTTGCAAATTATTA+GGG | 0.199094 | 3.3:-95454005 | None:intergenic |
| TCTGAAGGGGCTTGCCCTTA+TGG | 0.207997 | 3.3:+95451596 | MS.gene014230:CDS |
| TTTGAGTTTGGCATCAGTTT+TGG | 0.209531 | 3.3:-95451753 | None:intergenic |
| GTACATACCTGTTGGTCTTT+TGG | 0.213055 | 3.3:+95454891 | MS.gene014230:CDS |
| CGGAGAGTTTGCAAAGTATT+AGG | 0.224724 | 3.3:+95452888 | MS.gene014230:CDS |
| TTCAAGCTTAGATCAGTTTC+TGG | 0.235550 | 3.3:-95452780 | None:intergenic |
| TATTGACATTGTTGTGAATA+AGG | 0.254656 | 3.3:+95453511 | MS.gene014230:CDS |
| GAAAATACCTTTATAGTTAC+TGG | 0.254912 | 3.3:-95453611 | None:intergenic |
| GGCAATGTGCACAAATCTTT+TGG | 0.260235 | 3.3:+95452935 | MS.gene014230:CDS |
| AAGGAAAGGTGTGAAGTTAA+TGG | 0.263218 | 3.3:+95451680 | MS.gene014230:CDS |
| ATCAAGCATGTGGCAAGTTC+AGG | 0.280736 | 3.3:-95454081 | None:intergenic |
| CTGTTGGAAATCTCCCTTTC+CGG | 0.300157 | 3.3:+95452868 | MS.gene014230:CDS |
| TTCAATCCGTTAGAAGATAA+AGG | 0.302002 | 3.3:-95451659 | None:intergenic |
| ACAGCTCGCCCTACAGTATC+TGG | 0.309018 | 3.3:-95453431 | None:intergenic |
| AGTGCAGAAATTGGCTGATT+TGG | 0.309679 | 3.3:+95451550 | MS.gene014230:intron |
| CAAATTATTAGGGGCTTTCC+TGG | 0.310598 | 3.3:-95453995 | None:intergenic |
| TCACCTGACTTGGCAATGTT+TGG | 0.321046 | 3.3:-95451382 | None:intergenic |
| TGCAGCTTCCGTCCACAATT+TGG | 0.322863 | 3.3:-95452719 | None:intergenic |
| TGGCGTCCACCATCTTACTA+TGG | 0.337133 | 3.3:+95454937 | MS.gene014230:CDS |
| TAAGCATTTGATTTATGCTT+TGG | 0.341936 | 3.3:-95455523 | None:intergenic |
| CTGAAGGGGCTTGCCCTTAT+GGG | 0.347394 | 3.3:+95451597 | MS.gene014230:CDS |
| TTCTTCTCCTTGGCGAGAAC+GGG | 0.350694 | 3.3:-95451214 | None:intergenic |
| CCTCCGACTCTGCAGCTGAC+TGG | 0.356032 | 3.3:+95454986 | MS.gene014230:CDS |
| GAGGGTGGCGAGGATGATTC+TGG | 0.361324 | 3.3:+95451085 | MS.gene014230:CDS |
| CTGGATATTTACAGAGATAA+AGG | 0.364629 | 3.3:+95454282 | MS.gene014230:CDS |
| TTATTCACAACAATGTCAAT+AGG | 0.366558 | 3.3:-95453509 | None:intergenic |
| ACTCAAACGTGAACGTCTTC+AGG | 0.379434 | 3.3:+95451249 | MS.gene014230:CDS |
| TGAAATAACATGCGGTGAAA+TGG | 0.380122 | 3.3:+95452914 | MS.gene014230:CDS |
| GCTTACGATAGAGCTGAAAA+TGG | 0.381878 | 3.3:+95455541 | MS.gene014230:CDS |
| TGATAGCAAACTTTAGCTCT+TGG | 0.383995 | 3.3:+95453887 | MS.gene014230:CDS |
| TGGTTCCACAACGAATAAAT+TGG | 0.387831 | 3.3:+95454917 | MS.gene014230:CDS |
| CGAATGAAGTCCTTCTTAAC+AGG | 0.389902 | 3.3:-95451136 | None:intergenic |
| CTTTATCTCTGTAAATATCC+AGG | 0.392779 | 3.3:-95454281 | None:intergenic |
| ACTCAAAACTCTTGGTCTCT+TGG | 0.396620 | 3.3:+95451769 | MS.gene014230:CDS |
| CGACATTGGGACATCAGTTC+TGG | 0.407363 | 3.3:+95454310 | MS.gene014230:CDS |
| CGATATTCCAGTAACTATAA+AGG | 0.408639 | 3.3:+95453604 | MS.gene014230:CDS |
| AATGGCTTAGCTACACTTGT+AGG | 0.413091 | 3.3:+95454869 | MS.gene014230:CDS |
| AAAGAAGCTTATTGATTTCA+GGG | 0.413252 | 3.3:+95452818 | MS.gene014230:CDS |
| CTCCGACTCTGCAGCTGACT+GGG | 0.414717 | 3.3:+95454987 | MS.gene014230:CDS |
| CGATTATCAGAGATGTTACT+TGG | 0.415656 | 3.3:+95455472 | MS.gene014230:CDS |
| CTGATGATGACGGCTCTTGT+GGG | 0.420813 | 3.3:+95452411 | MS.gene014230:CDS |
| GACTACCAGGCGGTTCTTGT+TGG | 0.425033 | 3.3:+95454846 | MS.gene014230:CDS |
| CCTTGAATGCTTGAATATCA+TGG | 0.425429 | 3.3:-95451444 | None:intergenic |
| TTTATCTTCTAACGGATTGA+AGG | 0.427366 | 3.3:+95451661 | MS.gene014230:CDS |
| TCAAGCTTAGATCAGTTTCT+GGG | 0.431326 | 3.3:-95452779 | None:intergenic |
| GCCCCTTCAGATTTCAGAAA+AGG | 0.433089 | 3.3:-95451584 | None:intergenic |
| ATTATTCAGAATAAGTCAAA+AGG | 0.433111 | 3.3:+95452272 | MS.gene014230:intron |
| TATTCACAACAATGTCAATA+GGG | 0.433555 | 3.3:-95453508 | None:intergenic |
| GCGTTTAGATTTCTTCTCCT+TGG | 0.436186 | 3.3:-95451224 | None:intergenic |
| TGTCCAAACATTGCCAAGTC+AGG | 0.437155 | 3.3:+95451379 | MS.gene014230:CDS |
| GATAGCAAACTTTAGCTCTT+GGG | 0.437315 | 3.3:+95453888 | MS.gene014230:CDS |
| ATTGACATTGTTGTGAATAA+GGG | 0.443562 | 3.3:+95453512 | MS.gene014230:CDS |
| TCTGATGATGACGGCTCTTG+TGG | 0.451639 | 3.3:+95452410 | MS.gene014230:CDS |
| AATCTACAGGATAACCCATA+AGG | 0.452239 | 3.3:-95451611 | None:intergenic |
| AGAACGGGAGGTTTGTCGTT+AGG | 0.455603 | 3.3:-95451199 | None:intergenic |
| CTATAGCAAGCCTGCTGACT+GGG | 0.455984 | 3.3:+95453954 | MS.gene014230:CDS |
| CTTGCACCCTTGACCACTGT+TGG | 0.457396 | 3.3:+95452852 | MS.gene014230:CDS |
| CCATGATATTCAAGCATTCA+AGG | 0.465143 | 3.3:+95451444 | MS.gene014230:CDS |
| TATTCAAGCATTCAAGGAAC+AGG | 0.470870 | 3.3:+95451450 | MS.gene014230:CDS |
| ACCACATCCAAAAGACCAAC+AGG | 0.471371 | 3.3:-95454898 | None:intergenic |
| CAAATAAATCTTCAGATGAA+TGG | 0.475342 | 3.3:-95453385 | None:intergenic |
| CCTAATAATTTGCAAGTAGT+GGG | 0.481679 | 3.3:+95454006 | MS.gene014230:CDS |
| GCTATAGCAAGCCTGCTGAC+TGG | 0.484632 | 3.3:+95453953 | MS.gene014230:CDS |
| CCAGGCGGTTCTTGTTGGAA+TGG | 0.486124 | 3.3:+95454851 | MS.gene014230:CDS |
| AGATAAAGGAACAGCGACAT+TGG | 0.487762 | 3.3:+95454296 | MS.gene014230:CDS |
| ATCTACAGGATAACCCATAA+GGG | 0.490649 | 3.3:-95451610 | None:intergenic |
| AGCTGTTGAACTAATAGAAA+AGG | 0.491306 | 3.3:+95453448 | MS.gene014230:CDS |
| GGTGCAAAAGTAAAGCCATC+TGG | 0.492838 | 3.3:-95455502 | None:intergenic |
| CTAATACTTTGCAAACTCTC+CGG | 0.503430 | 3.3:-95452887 | None:intergenic |
| CCCTAATAATTTGCAAGTAG+TGG | 0.503908 | 3.3:+95454005 | MS.gene014230:CDS |
| GAGATTTCCAACAGTGGTCA+AGG | 0.504165 | 3.3:-95452859 | None:intergenic |
| TTTCTTCTCCTTGGCGAGAA+CGG | 0.504371 | 3.3:-95451215 | None:intergenic |
| AGTGTTGTAGAAGTAGCTTC+AGG | 0.504684 | 3.3:+95453575 | MS.gene014230:CDS |
| GATAAAGGAACAGCGACATT+GGG | 0.506305 | 3.3:+95454297 | MS.gene014230:CDS |
| CTTCTAACGGATTGAAGGAA+AGG | 0.507476 | 3.3:+95451666 | MS.gene014230:CDS |
| ATGCATAGCTCCTGTTAAGA+AGG | 0.509595 | 3.3:+95451126 | MS.gene014230:CDS |
| CTTTGCAAACTCTCCGGAAA+GGG | 0.509906 | 3.3:-95452881 | None:intergenic |
| TATTTGGTGTACAAATCTGT+GGG | 0.518175 | 3.3:+95453402 | MS.gene014230:CDS |
| GGTAAGCCTTTATCTTCTAA+CGG | 0.521576 | 3.3:+95451653 | MS.gene014230:CDS |
| GCAGTAGTTCGATCGGGAGG+AGG | 0.523723 | 3.3:-95451160 | None:intergenic |
| AGTAGTAGCAGTAGTTCGAT+CGG | 0.524683 | 3.3:-95451167 | None:intergenic |
| AATAGGGTCAAGCTTCAGAA+TGG | 0.525188 | 3.3:+95453348 | MS.gene014230:intron |
| GATGCCAAACTCAAAACTCT+TGG | 0.527301 | 3.3:+95451761 | MS.gene014230:CDS |
| GCAGAAATTGGCTGATTTGG+AGG | 0.528457 | 3.3:+95451553 | MS.gene014230:intron |
| GGACGCCAATTTATTCGTTG+TGG | 0.530603 | 3.3:-95454922 | None:intergenic |
| TCAAGCATGTGGCAAGTTCA+GGG | 0.531108 | 3.3:-95454080 | None:intergenic |
| AGGTTTGTCGTTAGGAGCAG+AGG | 0.532676 | 3.3:-95451191 | None:intergenic |
| GGAATTAACATCACCTGACT+TGG | 0.533236 | 3.3:-95451392 | None:intergenic |
| TCCACCATCTTACTATGGGC+GGG | 0.533280 | 3.3:+95454942 | MS.gene014230:CDS |
| TTCTCCTTGGCGAGAACGGG+AGG | 0.534154 | 3.3:-95451211 | None:intergenic |
| AACTTAGAATCTGAGTCAGC+AGG | 0.536668 | 3.3:-95452437 | None:intergenic |
| TTTATCTCTGTAAATATCCA+GGG | 0.542057 | 3.3:-95454280 | None:intergenic |
| ATGGTGGTGATAAATGTGTT+AGG | 0.542816 | 3.3:+95452315 | MS.gene014230:CDS |
| AACTTTAATAAGTGCACCAC+GGG | 0.546118 | 3.3:-95454106 | None:intergenic |
| GTAGTAGCAGTAGTTCGATC+GGG | 0.546772 | 3.3:-95451166 | None:intergenic |
| CGCAGAAAATTGTGAAGATG+AGG | 0.547997 | 3.3:+95452550 | MS.gene014230:CDS |
| CATTGGGGTTCAGATACAAA+AGG | 0.548625 | 3.3:+95454379 | MS.gene014230:CDS |
| TTATTTGGTGTACAAATCTG+TGG | 0.548788 | 3.3:+95453401 | MS.gene014230:CDS |
| TACCCAGTCAGCTGCAGAGT+CGG | 0.552423 | 3.3:-95454989 | None:intergenic |
| ATAGCAAACTTTAGCTCTTG+GGG | 0.552673 | 3.3:+95453889 | MS.gene014230:CDS |
| ATTGTTGTGAATAAGGGTGC+TGG | 0.557588 | 3.3:+95453518 | MS.gene014230:CDS |
| ATAGGGTCAAGCTTCAGAAT+GGG | 0.559018 | 3.3:+95453349 | MS.gene014230:intron |
| AATTTGCAAGTAGTGGGGAA+TGG | 0.559807 | 3.3:+95454012 | MS.gene014230:CDS |
| CACTACTTGCAAATTATTAG+GGG | 0.560194 | 3.3:-95454004 | None:intergenic |
| GGCGTCCACCATCTTACTAT+GGG | 0.561761 | 3.3:+95454938 | MS.gene014230:CDS |
| TTGTGCGGTTACATCTGACT+TGG | 0.563691 | 3.3:+95452355 | MS.gene014230:CDS |
| AGCGAAAATGGAGGGTGGCG+AGG | 0.566641 | 3.3:+95451075 | None:intergenic |
| AGATTTCATTGATATAAACA+TGG | 0.570150 | 3.3:+95453481 | MS.gene014230:CDS |
| GCTAGTGCAGTGACAATACA+TGG | 0.572548 | 3.3:+95453913 | MS.gene014230:CDS |
| GTCCACCATCTTACTATGGG+CGG | 0.574224 | 3.3:+95454941 | MS.gene014230:CDS |
| GAAGACGTTCACGTTTGAGT+TGG | 0.577856 | 3.3:-95451246 | None:intergenic |
| ATTTAGAGAGCGAAAATGGA+GGG | 0.578238 | 3.3:+95451067 | None:intergenic |
| GATGAGGAGACGGAAAATGA+AGG | 0.581481 | 3.3:+95452566 | MS.gene014230:CDS |
| TATACGTAATCCCAGTCAGC+AGG | 0.583058 | 3.3:-95453964 | None:intergenic |
| ATTACGTATATCAGTGTACC+AGG | 0.583452 | 3.3:+95453977 | MS.gene014230:CDS |
| TTATTCAGAATAAGTCAAAA+GGG | 0.583832 | 3.3:+95452273 | MS.gene014230:intron |
| ATAAGATCTGAATCAGAGGC+AGG | 0.586531 | 3.3:+95452741 | MS.gene014230:CDS |
| ACTTGGCAATGTTTGGACAA+AGG | 0.587871 | 3.3:-95451375 | None:intergenic |
| GTGCAGTGACAATACATGGC+AGG | 0.591689 | 3.3:+95453917 | MS.gene014230:CDS |
| TCATCCCGCCCATAGTAAGA+TGG | 0.591793 | 3.3:-95454946 | None:intergenic |
| TTACTTGGCAAAGTTCCAGA+TGG | 0.593149 | 3.3:+95455487 | MS.gene014230:CDS |
| GGGCACATCCAGATACTGTA+GGG | 0.597587 | 3.3:+95453423 | MS.gene014230:CDS |
| AAATTGTGAAGATGAGGAGA+CGG | 0.597649 | 3.3:+95452556 | MS.gene014230:CDS |
| CCATTCCAACAAGAACCGCC+TGG | 0.597793 | 3.3:-95454851 | None:intergenic |
| CCAGTCAGCTGCAGAGTCGG+AGG | 0.597833 | 3.3:-95454986 | None:intergenic |
| GATTTCATTGATATAAACAT+GGG | 0.598109 | 3.3:+95453482 | MS.gene014230:CDS |
| CAGAAATTGGCTGATTTGGA+GGG | 0.598151 | 3.3:+95451554 | MS.gene014230:intron |
| GCCACATGCTTGATTGCCCG+TGG | 0.599335 | 3.3:+95454090 | MS.gene014230:CDS |
| GGGGCACATCCAGATACTGT+AGG | 0.600909 | 3.3:+95453422 | MS.gene014230:CDS |
| ACTTTGCAAACTCTCCGGAA+AGG | 0.609314 | 3.3:-95452882 | None:intergenic |
| CAAACCTCCCGTTCTCGCCA+AGG | 0.612861 | 3.3:+95451207 | MS.gene014230:CDS |
| CGCCATCAGTCTGATGATGA+CGG | 0.614570 | 3.3:+95452401 | MS.gene014230:CDS |
| CAAGCTTAGATCAGTTTCTG+GGG | 0.615452 | 3.3:-95452778 | None:intergenic |
| GATGTTATAAAAGATGATGA+TGG | 0.618144 | 3.3:+95452473 | MS.gene014230:CDS |
| CGGAGGCCATCAGTGTCTCA+AGG | 0.618970 | 3.3:-95454969 | None:intergenic |
| TGATGATGACGGCTCTTGTG+GGG | 0.619036 | 3.3:+95452412 | MS.gene014230:CDS |
| AGATTTCCAACAGTGGTCAA+GGG | 0.619386 | 3.3:-95452858 | None:intergenic |
| CTGCATAAGATCTGAATCAG+AGG | 0.625016 | 3.3:+95452737 | MS.gene014230:CDS |
| TGACAATACATGGCAGGTCA+CGG | 0.625204 | 3.3:+95453923 | MS.gene014230:CDS |
| TCCCGCCCATAGTAAGATGG+TGG | 0.627157 | 3.3:-95454943 | None:intergenic |
| AGCCGTCATCATCAGACTGA+TGG | 0.627690 | 3.3:-95452403 | None:intergenic |
| ACTTGTAGGTACATACCTGT+TGG | 0.629119 | 3.3:+95454883 | MS.gene014230:CDS |
| GGATGACCTTGAGACACTGA+TGG | 0.629574 | 3.3:+95454963 | MS.gene014230:CDS |
| GAGTGTTGATGACCAAATTG+TGG | 0.636784 | 3.3:+95452707 | MS.gene014230:CDS |
| CTAATAATTTGCAAGTAGTG+GGG | 0.639061 | 3.3:+95454007 | MS.gene014230:CDS |
| ACCACGGGCAATCAAGCATG+TGG | 0.640032 | 3.3:-95454091 | None:intergenic |
| GTAGCAGTAGTTCGATCGGG+AGG | 0.643717 | 3.3:-95451163 | None:intergenic |
| TGATGACAATGGTTCTTGTG+CGG | 0.659310 | 3.3:+95452340 | MS.gene014230:CDS |
| GACTTGGAAAACAAAGACGA+TGG | 0.672348 | 3.3:+95452371 | MS.gene014230:CDS |
| ATTTGGTGTACAAATCTGTG+GGG | 0.684676 | 3.3:+95453403 | MS.gene014230:CDS |
| GTTGATGACCAAATTGTGGA+CGG | 0.696468 | 3.3:+95452711 | MS.gene014230:CDS |
| TAGAGAGCGAAAATGGAGGG+TGG | 0.698133 | 3.3:+95451070 | None:intergenic |
| GAAAGGGAGATTTCCAACAG+TGG | 0.699664 | 3.3:-95452865 | None:intergenic |
| TAACTTTAATAAGTGCACCA+CGG | 0.702021 | 3.3:-95454107 | None:intergenic |
| TTAGGAGCTGAAATAACATG+CGG | 0.710264 | 3.3:+95452906 | MS.gene014230:CDS |
| TGTGTTAGGTCTGATGACAA+TGG | 0.724173 | 3.3:+95452329 | MS.gene014230:CDS |
| TAGGGGTGGAGACTACCAGG+CGG | 0.796234 | 3.3:+95454836 | MS.gene014230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTATTAATTTACAA+GGG | + | chr3.3:95451506-95451525 | MS.gene014230:intron | 10.0% |
| !!! | TAAAATCTTAATTTTATACA+AGG | - | chr3.3:95455192-95455211 | None:intergenic | 10.0% |
| !! | AATCTAATATTATAATATCC+TGG | + | chr3.3:95455409-95455428 | MS.gene014230:intron | 15.0% |
| !! | ATTGTTTATTAATTTACAAG+GGG | + | chr3.3:95451507-95451526 | MS.gene014230:intron | 15.0% |
| !! | CAATTGTTTATTAATTTACA+AGG | + | chr3.3:95451505-95451524 | MS.gene014230:intron | 15.0% |
| !!! | ATAATTTTGCTTTTGTAATA+GGG | + | chr3.3:95453332-95453351 | MS.gene014230:intron | 15.0% |
| !!! | ATACAAAAGGTATATTTTAT+TGG | + | chr3.3:95454392-95454411 | MS.gene014230:intron | 15.0% |
| !!! | GTGTGTTTTTAATTTTAATA+TGG | + | chr3.3:95452181-95452200 | MS.gene014230:intron | 15.0% |
| !! | AAATATAATGAATAAGTGTC+AGG | - | chr3.3:95455159-95455178 | None:intergenic | 20.0% |
| !! | AATTAAAACTGAGTTCTTAA+AGG | - | chr3.3:95452227-95452246 | None:intergenic | 20.0% |
| !! | AATTTGAGCAATGATAATAA+AGG | - | chr3.3:95452148-95452167 | None:intergenic | 20.0% |
| !! | AGATTTCATTGATATAAACA+TGG | + | chr3.3:95453481-95453500 | MS.gene014230:CDS | 20.0% |
| !! | AGCTATTTATATAGAAAAGA+AGG | - | chr3.3:95451282-95451301 | None:intergenic | 20.0% |
| !! | ATGTGTATTTAAAAATCTAC+AGG | - | chr3.3:95451627-95451646 | None:intergenic | 20.0% |
| !! | ATTATTCAGAATAAGTCAAA+AGG | + | chr3.3:95452272-95452291 | MS.gene014230:intron | 20.0% |
| !! | GATTTCATTGATATAAACAT+GGG | + | chr3.3:95453482-95453501 | MS.gene014230:CDS | 20.0% |
| !! | GCTATTTATATAGAAAAGAA+GGG | - | chr3.3:95451281-95451300 | None:intergenic | 20.0% |
| !! | TTATTCAGAATAAGTCAAAA+GGG | + | chr3.3:95452273-95452292 | MS.gene014230:intron | 20.0% |
| !! | TTGTTTATTAATTTACAAGG+GGG | + | chr3.3:95451508-95451527 | MS.gene014230:intron | 20.0% |
| !! | TTTCATAGCAATTATGAATT+CGG | - | chr3.3:95451851-95451870 | None:intergenic | 20.0% |
| !!! | AATTATTGGTTCCTATATTA+AGG | - | chr3.3:95453156-95453175 | None:intergenic | 20.0% |
| !!! | ACTTGATAAATTCATTTTAG+GGG | - | chr3.3:95453097-95453116 | None:intergenic | 20.0% |
| !!! | AGAAAATAGTTTTGTTTAAC+AGG | + | chr3.3:95455312-95455331 | MS.gene014230:intron | 20.0% |
| !!! | ATATTATATGCTGTGTTTTA+GGG | + | chr3.3:95454818-95454837 | MS.gene014230:intron | 20.0% |
| !!! | ATTTTTAAATACACATCAAG+AGG | + | chr3.3:95451631-95451650 | MS.gene014230:CDS | 20.0% |
| !!! | CACTTGATAAATTCATTTTA+GGG | - | chr3.3:95453098-95453117 | None:intergenic | 20.0% |
| !!! | CATAATTTTGCTTTTGTAAT+AGG | + | chr3.3:95453331-95453350 | MS.gene014230:intron | 20.0% |
| !!! | TATATTATATGCTGTGTTTT+AGG | + | chr3.3:95454817-95454836 | MS.gene014230:intron | 20.0% |
| !!! | TATATTTTGATACCAATTTC+AGG | + | chr3.3:95453038-95453057 | MS.gene014230:intron | 20.0% |
| !!! | TCACTTGATAAATTCATTTT+AGG | - | chr3.3:95453099-95453118 | None:intergenic | 20.0% |
| !!! | TTTTCTTGAGCATATTTAAA+CGG | + | chr3.3:95455034-95455053 | MS.gene014230:intron | 20.0% |
| !!! | TTTTTAAATACACATCAAGA+GGG | + | chr3.3:95451632-95451651 | MS.gene014230:CDS | 20.0% |
| ! | AAAAGAATCGTTTAACAGTA+TGG | - | chr3.3:95455437-95455456 | None:intergenic | 25.0% |
| ! | AAACATTGATGAGTGTATAA+GGG | + | chr3.3:95454622-95454641 | MS.gene014230:intron | 25.0% |
| ! | AAAGAATCGTTTAACAGTAT+GGG | - | chr3.3:95455436-95455455 | None:intergenic | 25.0% |
| ! | ATTATTCATCAATATGCTAC+TGG | + | chr3.3:95452058-95452077 | MS.gene014230:intron | 25.0% |
| ! | ATTGACATTGTTGTGAATAA+GGG | + | chr3.3:95453512-95453531 | MS.gene014230:CDS | 25.0% |
| ! | CAAATAAATCTTCAGATGAA+TGG | - | chr3.3:95453388-95453407 | None:intergenic | 25.0% |
| ! | CATCAATGTTTCATATTCTT+TGG | - | chr3.3:95454613-95454632 | None:intergenic | 25.0% |
| ! | CATTCATCTGAAGATTTATT+TGG | + | chr3.3:95453386-95453405 | MS.gene014230:CDS | 25.0% |
| ! | GAAAATACCTTTATAGTTAC+TGG | - | chr3.3:95453614-95453633 | None:intergenic | 25.0% |
| ! | GATGTTATAAAAGATGATGA+TGG | + | chr3.3:95452473-95452492 | MS.gene014230:CDS | 25.0% |
| ! | TATCTTAAGCAAACATATTG+CGG | - | chr3.3:95453796-95453815 | None:intergenic | 25.0% |
| ! | TATTCACAACAATGTCAATA+GGG | - | chr3.3:95453511-95453530 | None:intergenic | 25.0% |
| ! | TATTGACATTGTTGTGAATA+AGG | + | chr3.3:95453511-95453530 | MS.gene014230:CDS | 25.0% |
| ! | TGTTTATTAATTTACAAGGG+GGG | + | chr3.3:95451509-95451528 | MS.gene014230:intron | 25.0% |
| ! | TTAAATATGCTCAAGAAAAC+TGG | - | chr3.3:95455033-95455052 | None:intergenic | 25.0% |
| ! | TTATGTAGATGCAACAAATT+TGG | + | chr3.3:95454566-95454585 | MS.gene014230:intron | 25.0% |
| ! | TTATTCACAACAATGTCAAT+AGG | - | chr3.3:95453512-95453531 | None:intergenic | 25.0% |
| ! | TTTATCTCTGTAAATATCCA+GGG | - | chr3.3:95454283-95454302 | None:intergenic | 25.0% |
| !! | AATAATGATCGATTCAAATG+TGG | - | chr3.3:95452258-95452277 | None:intergenic | 25.0% |
| !! | AATCTTTATTTCGATAAGAG+AGG | - | chr3.3:95455216-95455235 | None:intergenic | 25.0% |
| !! | ACTAAGAGCATATAATTTGT+GGG | + | chr3.3:95454654-95454673 | MS.gene014230:intron | 25.0% |
| !! | ATCTTTATTTCGATAAGAGA+GGG | - | chr3.3:95455215-95455234 | None:intergenic | 25.0% |
| !! | CGATTCTTTTTATTATACAC+AGG | + | chr3.3:95455447-95455466 | MS.gene014230:intron | 25.0% |
| !! | TAAGCATTTGATTTATGCTT+TGG | - | chr3.3:95455526-95455545 | None:intergenic | 25.0% |
| !! | TTCAAAGATTTTGTGCATTT+TGG | + | chr3.3:95454349-95454368 | MS.gene014230:CDS | 25.0% |
| !!! | AAAAGAAGCTTATTGATTTC+AGG | + | chr3.3:95452817-95452836 | MS.gene014230:CDS | 25.0% |
| !!! | AAAATTTTTCAAAACTCTGC+TGG | + | chr3.3:95453183-95453202 | MS.gene014230:intron | 25.0% |
| !!! | AAAGAAGCTTATTGATTTCA+GGG | + | chr3.3:95452818-95452837 | MS.gene014230:CDS | 25.0% |
| !!! | AAATTTGTTGCATCTACATA+AGG | - | chr3.3:95454567-95454586 | None:intergenic | 25.0% |
| !!! | AAATTTTTCAAAACTCTGCT+GGG | + | chr3.3:95453184-95453203 | MS.gene014230:intron | 25.0% |
| !!! | ATGTTTTTTCATTTGTAGAC+TGG | + | chr3.3:95454037-95454056 | MS.gene014230:CDS | 25.0% |
| !!! | TAACAAGATTTTTTTTGTCC+TGG | - | chr3.3:95453760-95453779 | None:intergenic | 25.0% |
| !!! | TATTATATGCTGTGTTTTAG+GGG | + | chr3.3:95454819-95454838 | MS.gene014230:intron | 25.0% |
| !!! | TGTTGTTTTTTTCTAGCAAA+TGG | - | chr3.3:95454750-95454769 | None:intergenic | 25.0% |
| AACATTGATGAGTGTATAAG+GGG | + | chr3.3:95454623-95454642 | MS.gene014230:intron | 30.0% | |
| AAGACAAATACCAAACTATG+TGG | - | chr3.3:95453070-95453089 | None:intergenic | 30.0% | |
| ACTTTAGTGCTTATAGTCTA+TGG | + | chr3.3:95452606-95452625 | MS.gene014230:intron | 30.0% | |
| AGACAAATACCAAACTATGT+GGG | - | chr3.3:95453069-95453088 | None:intergenic | 30.0% | |
| AGCTGTTGAACTAATAGAAA+AGG | + | chr3.3:95453448-95453467 | MS.gene014230:CDS | 30.0% | |
| ATCCTGAGTATGATGTATAT+AGG | + | chr3.3:95452995-95453014 | MS.gene014230:intron | 30.0% | |
| ATGAATAATTACAAGCGCAT+TGG | - | chr3.3:95452047-95452066 | None:intergenic | 30.0% | |
| CAAGAAAACTGGAAACAAAA+GGG | - | chr3.3:95455022-95455041 | None:intergenic | 30.0% | |
| CACTACTTGCAAATTATTAG+GGG | - | chr3.3:95454007-95454026 | None:intergenic | 30.0% | |
| CCACTACTTGCAAATTATTA+GGG | - | chr3.3:95454008-95454027 | None:intergenic | 30.0% | |
| CGATATTCCAGTAACTATAA+AGG | + | chr3.3:95453604-95453623 | MS.gene014230:CDS | 30.0% | |
| CTGGATATTTACAGAGATAA+AGG | + | chr3.3:95454282-95454301 | MS.gene014230:CDS | 30.0% | |
| CTTTATCTCTGTAAATATCC+AGG | - | chr3.3:95454284-95454303 | None:intergenic | 30.0% | |
| GAAACATTGATGAGTGTATA+AGG | + | chr3.3:95454621-95454640 | MS.gene014230:intron | 30.0% | |
| GAACGTTGAAACCTTAATAT+AGG | + | chr3.3:95453142-95453161 | MS.gene014230:intron | 30.0% | |
| GACTACATGTAAAAGATTGA+AGG | - | chr3.3:95454722-95454741 | None:intergenic | 30.0% | |
| GCAAAAGAAAAGAAAAGATG+AGG | - | chr3.3:95453269-95453288 | None:intergenic | 30.0% | |
| GGACACAATGAAATTTGTAT+CGG | + | chr3.3:95453653-95453672 | MS.gene014230:intron | 30.0% | |
| TAACTTTAATAAGTGCACCA+CGG | - | chr3.3:95454110-95454129 | None:intergenic | 30.0% | |
| TAATAAAGGAACACTGACAA+AGG | - | chr3.3:95452134-95452153 | None:intergenic | 30.0% | |
| TCAACTAGAATTGAATGCAA+AGG | - | chr3.3:95452658-95452677 | None:intergenic | 30.0% | |
| TCAAGAAAACTGGAAACAAA+AGG | - | chr3.3:95455023-95455042 | None:intergenic | 30.0% | |
| TCCTGAGTATGATGTATATA+GGG | + | chr3.3:95452996-95453015 | MS.gene014230:intron | 30.0% | |
| TTCAATCCGTTAGAAGATAA+AGG | - | chr3.3:95451662-95451681 | None:intergenic | 30.0% | |
| TTGCATGAATAGAGAAGAAA+GGG | - | chr3.3:95455271-95455290 | None:intergenic | 30.0% | |
| TTTGCATGAATAGAGAAGAA+AGG | - | chr3.3:95455272-95455291 | None:intergenic | 30.0% | |
| TTTGTTTAACAGGATGTAGT+TGG | + | chr3.3:95455322-95455341 | MS.gene014230:intron | 30.0% | |
| ! | AAACGACAGTTTTCTTGATA+AGG | - | chr3.3:95451421-95451440 | None:intergenic | 30.0% |
| ! | AAACTATTTTCTGCTGTCTT+CGG | - | chr3.3:95455304-95455323 | None:intergenic | 30.0% |
| ! | AAGATGTTCAGAAGCTTTTA+TGG | + | chr3.3:95451711-95451730 | MS.gene014230:CDS | 30.0% |
| ! | CATATTTAAACGGTGTGTTT+TGG | + | chr3.3:95455044-95455063 | MS.gene014230:intron | 30.0% |
| ! | CCTAATAATTTGCAAGTAGT+GGG | + | chr3.3:95454006-95454025 | MS.gene014230:CDS | 30.0% |
| ! | CTAATAATTTGCAAGTAGTG+GGG | + | chr3.3:95454007-95454026 | MS.gene014230:CDS | 30.0% |
| ! | GACTAAGAGCATATAATTTG+TGG | + | chr3.3:95454653-95454672 | MS.gene014230:intron | 30.0% |
| ! | TGCGGTTTTTCTTTTCTTTT+GGG | - | chr3.3:95452534-95452553 | None:intergenic | 30.0% |
| ! | TTTCTAGTGTACTACTATGT+AGG | - | chr3.3:95452020-95452039 | None:intergenic | 30.0% |
| !! | TATTTGGTGTACAAATCTGT+GGG | + | chr3.3:95453402-95453421 | MS.gene014230:CDS | 30.0% |
| !! | TTATTTGGTGTACAAATCTG+TGG | + | chr3.3:95453401-95453420 | MS.gene014230:CDS | 30.0% |
| !! | TTTATCTTCTAACGGATTGA+AGG | + | chr3.3:95451661-95451680 | MS.gene014230:CDS | 30.0% |
| !!! | ACTGTTTAGTGTTTGTTTTG+AGG | - | chr3.3:95454507-95454526 | None:intergenic | 30.0% |
| !!! | GTATATTTTATTGGTGCTGA+TGG | + | chr3.3:95454401-95454420 | MS.gene014230:intron | 30.0% |
| AAATTGTGAAGATGAGGAGA+CGG | + | chr3.3:95452556-95452575 | MS.gene014230:CDS | 35.0% | |
| AACTTTAATAAGTGCACCAC+GGG | - | chr3.3:95454109-95454128 | None:intergenic | 35.0% | |
| AATCTACAGGATAACCCATA+AGG | - | chr3.3:95451614-95451633 | None:intergenic | 35.0% | |
| AATGCCGTCAAAAACAAAGA+TGG | + | chr3.3:95452296-95452315 | MS.gene014230:CDS | 35.0% | |
| ACCTAGTGCAATAGATGAAT+GGG | - | chr3.3:95453826-95453845 | None:intergenic | 35.0% | |
| AGGCATAACATGAACAACAA+CGG | - | chr3.3:95451815-95451834 | None:intergenic | 35.0% | |
| AGTTCAAAGTTCCAGAACAT+AGG | - | chr3.3:95453704-95453723 | None:intergenic | 35.0% | |
| ATCTACAGGATAACCCATAA+GGG | - | chr3.3:95451613-95451632 | None:intergenic | 35.0% | |
| ATTACGTATATCAGTGTACC+AGG | + | chr3.3:95453977-95453996 | MS.gene014230:CDS | 35.0% | |
| CAGAACAAAACAAAGAGGAT+GGG | - | chr3.3:95453235-95453254 | None:intergenic | 35.0% | |
| CATAAAATGAGATCGAGACA+AGG | - | chr3.3:95454142-95454161 | None:intergenic | 35.0% | |
| CCATGATATTCAAGCATTCA+AGG | + | chr3.3:95451444-95451463 | MS.gene014230:CDS | 35.0% | |
| CCCACTACTTGCAAATTATT+AGG | - | chr3.3:95454009-95454028 | None:intergenic | 35.0% | |
| CCTTGAATGCTTGAATATCA+TGG | - | chr3.3:95451447-95451466 | None:intergenic | 35.0% | |
| CGATTATCAGAGATGTTACT+TGG | + | chr3.3:95455472-95455491 | MS.gene014230:CDS | 35.0% | |
| CTAATACTTTGCAAACTCTC+CGG | - | chr3.3:95452890-95452909 | None:intergenic | 35.0% | |
| GAAGCTATCAAGATGCTAAA+TGG | - | chr3.3:95453682-95453701 | None:intergenic | 35.0% | |
| GGTAAGCCTTTATCTTCTAA+CGG | + | chr3.3:95451653-95451672 | MS.gene014230:CDS | 35.0% | |
| TAATGCTAGTTGTCTTCATC+AGG | + | chr3.3:95454186-95454205 | MS.gene014230:intron | 35.0% | |
| TACCTAGTGCAATAGATGAA+TGG | - | chr3.3:95453827-95453846 | None:intergenic | 35.0% | |
| TAGCTTCATATTGCTGAAAC+AGG | + | chr3.3:95452681-95452700 | MS.gene014230:intron | 35.0% | |
| TATTCAAGCATTCAAGGAAC+AGG | + | chr3.3:95451450-95451469 | MS.gene014230:CDS | 35.0% | |
| TCAAGCTTAGATCAGTTTCT+GGG | - | chr3.3:95452782-95452801 | None:intergenic | 35.0% | |
| TCCATGCTAAATGCAACAAT+AGG | + | chr3.3:95453632-95453651 | MS.gene014230:intron | 35.0% | |
| TCCCTATATACATCATACTC+AGG | - | chr3.3:95453000-95453019 | None:intergenic | 35.0% | |
| TCCTATTGTTGCATTTAGCA+TGG | - | chr3.3:95453636-95453655 | None:intergenic | 35.0% | |
| TGAAATAACATGCGGTGAAA+TGG | + | chr3.3:95452914-95452933 | MS.gene014230:CDS | 35.0% | |
| TGAGATAGTATATCCTCCAT+AGG | + | chr3.3:95453116-95453135 | MS.gene014230:intron | 35.0% | |
| TGGTTCCACAACGAATAAAT+TGG | + | chr3.3:95454917-95454936 | MS.gene014230:CDS | 35.0% | |
| TGTCTTATGCCAAGAATGAA+CGG | + | chr3.3:95454540-95454559 | MS.gene014230:intron | 35.0% | |
| TTAGGAGCTGAAATAACATG+CGG | + | chr3.3:95452906-95452925 | MS.gene014230:CDS | 35.0% | |
| TTCAAGCTTAGATCAGTTTC+TGG | - | chr3.3:95452783-95452802 | None:intergenic | 35.0% | |
| TTCATCTATTGCACTAGGTA+CGG | + | chr3.3:95453827-95453846 | MS.gene014230:intron | 35.0% | |
| TTGTGCAGAACAAAACAAAG+AGG | - | chr3.3:95453240-95453259 | None:intergenic | 35.0% | |
| TTTAACAGGATGTAGTTGGT+AGG | + | chr3.3:95455326-95455345 | MS.gene014230:intron | 35.0% | |
| TTTGTCCTGGAAAACGTAAA+AGG | - | chr3.3:95453747-95453766 | None:intergenic | 35.0% | |
| ! | AAGGAAAGGTGTGAAGTTAA+TGG | + | chr3.3:95451680-95451699 | MS.gene014230:CDS | 35.0% |
| ! | AATGTGCACAAATCTTTTGG+AGG | + | chr3.3:95452938-95452957 | MS.gene014230:CDS | 35.0% |
| ! | ACAGTTTTCTTGATAAGGAC+AGG | - | chr3.3:95451416-95451435 | None:intergenic | 35.0% |
| ! | ATGGTGGTGATAAATGTGTT+AGG | + | chr3.3:95452315-95452334 | MS.gene014230:CDS | 35.0% |
| ! | CCCTAATAATTTGCAAGTAG+TGG | + | chr3.3:95454005-95454024 | MS.gene014230:CDS | 35.0% |
| ! | CCTTTGATGTAAAGAAGTGT+CGG | + | chr3.3:95451969-95451988 | MS.gene014230:intron | 35.0% |
| ! | CTCATCTTCACAATTTTCTG+CGG | - | chr3.3:95452552-95452571 | None:intergenic | 35.0% |
| ! | CTGCGGTTTTTCTTTTCTTT+TGG | - | chr3.3:95452535-95452554 | None:intergenic | 35.0% |
| ! | CTTGTCTCGATCTCATTTTA+TGG | + | chr3.3:95454140-95454159 | MS.gene014230:intron | 35.0% |
| ! | GCGGTTTTTCTTTTCTTTTG+GGG | - | chr3.3:95452533-95452552 | None:intergenic | 35.0% |
| ! | TAATTTACAAGGGGGGTTTT+TGG | + | chr3.3:95451516-95451535 | MS.gene014230:intron | 35.0% |
| ! | TAGCAATTATGAATTCGGTG+AGG | - | chr3.3:95451846-95451865 | None:intergenic | 35.0% |
| ! | TTGAGTTTGGCATCAGTTTT+GGG | - | chr3.3:95451755-95451774 | None:intergenic | 35.0% |
| !! | ATAGCAAACTTTAGCTCTTG+GGG | + | chr3.3:95453889-95453908 | MS.gene014230:CDS | 35.0% |
| !! | ATTTGGTGTACAAATCTGTG+GGG | + | chr3.3:95453403-95453422 | MS.gene014230:CDS | 35.0% |
| !! | CATTTTGGTCTTCAACATTG+GGG | + | chr3.3:95454364-95454383 | MS.gene014230:CDS | 35.0% |
| !! | GATAGCAAACTTTAGCTCTT+GGG | + | chr3.3:95453888-95453907 | MS.gene014230:CDS | 35.0% |
| !! | GCATTTTGGTCTTCAACATT+GGG | + | chr3.3:95454363-95454382 | MS.gene014230:CDS | 35.0% |
| !! | TGATAGCAAACTTTAGCTCT+TGG | + | chr3.3:95453887-95453906 | MS.gene014230:CDS | 35.0% |
| !! | TGCATTTTGGTCTTCAACAT+TGG | + | chr3.3:95454362-95454381 | MS.gene014230:CDS | 35.0% |
| !! | TTTCTTTTCTTTTGGGGACA+AGG | - | chr3.3:95452527-95452546 | None:intergenic | 35.0% |
| !! | TTTGAGTTTGGCATCAGTTT+TGG | - | chr3.3:95451756-95451775 | None:intergenic | 35.0% |
| !!! | ACCACCATCTTTGTTTTTGA+CGG | - | chr3.3:95452303-95452322 | None:intergenic | 35.0% |
| !!! | GTCCTTTTCTGAAATCTGAA+GGG | + | chr3.3:95451582-95451601 | MS.gene014230:CDS | 35.0% |
| !!! | TCCTTTTCTGAAATCTGAAG+GGG | + | chr3.3:95451583-95451602 | MS.gene014230:CDS | 35.0% |
| !!! | TGTCCTTTTCTGAAATCTGA+AGG | + | chr3.3:95451581-95451600 | MS.gene014230:CDS | 35.0% |
| AAAACAAAGAGGATGGGAGA+AGG | - | chr3.3:95453229-95453248 | None:intergenic | 40.0% | |
| AAACACAGACATGTCGATAG+TGG | + | chr3.3:95451868-95451887 | MS.gene014230:intron | 40.0% | |
| AACTTAGAATCTGAGTCAGC+AGG | - | chr3.3:95452440-95452459 | None:intergenic | 40.0% | |
| AATAGGGTCAAGCTTCAGAA+TGG | + | chr3.3:95453348-95453367 | MS.gene014230:intron | 40.0% | |
| AATGGCTTAGCTACACTTGT+AGG | + | chr3.3:95454869-95454888 | MS.gene014230:CDS | 40.0% | |
| ACATAAGGACCGTTCATTCT+TGG | - | chr3.3:95454552-95454571 | None:intergenic | 40.0% | |
| ACCCATTCATCTATTGCACT+AGG | + | chr3.3:95453822-95453841 | MS.gene014230:intron | 40.0% | |
| ACTCAAAACTCTTGGTCTCT+TGG | + | chr3.3:95451769-95451788 | MS.gene014230:CDS | 40.0% | |
| ACTTGGCAATGTTTGGACAA+AGG | - | chr3.3:95451378-95451397 | None:intergenic | 40.0% | |
| ACTTGTAGGTACATACCTGT+TGG | + | chr3.3:95454883-95454902 | MS.gene014230:CDS | 40.0% | |
| AGATAAAGGAACAGCGACAT+TGG | + | chr3.3:95454296-95454315 | MS.gene014230:CDS | 40.0% | |
| AGATTTCCAACAGTGGTCAA+GGG | - | chr3.3:95452861-95452880 | None:intergenic | 40.0% | |
| AGTAGTAGCAGTAGTTCGAT+CGG | - | chr3.3:95451170-95451189 | None:intergenic | 40.0% | |
| AGTGCAGAAATTGGCTGATT+TGG | + | chr3.3:95451550-95451569 | MS.gene014230:intron | 40.0% | |
| AGTGTTGTAGAAGTAGCTTC+AGG | + | chr3.3:95453575-95453594 | MS.gene014230:CDS | 40.0% | |
| ATAAGATCTGAATCAGAGGC+AGG | + | chr3.3:95452741-95452760 | MS.gene014230:CDS | 40.0% | |
| ATAGGGTCAAGCTTCAGAAT+GGG | + | chr3.3:95453349-95453368 | MS.gene014230:intron | 40.0% | |
| ATGCATAGCTCCTGTTAAGA+AGG | + | chr3.3:95451126-95451145 | MS.gene014230:CDS | 40.0% | |
| ATGTGGGAATTGCCTGAAAT+TGG | - | chr3.3:95453053-95453072 | None:intergenic | 40.0% | |
| CAAATTATTAGGGGCTTTCC+TGG | - | chr3.3:95453998-95454017 | None:intergenic | 40.0% | |
| CAAGCTTAGATCAGTTTCTG+GGG | - | chr3.3:95452781-95452800 | None:intergenic | 40.0% | |
| CATTGGGGTTCAGATACAAA+AGG | + | chr3.3:95454379-95454398 | MS.gene014230:CDS | 40.0% | |
| CCGACACTTCTTTACATCAA+AGG | - | chr3.3:95451972-95451991 | None:intergenic | 40.0% | |
| CGAATGAAGTCCTTCTTAAC+AGG | - | chr3.3:95451139-95451158 | None:intergenic | 40.0% | |
| CGCAGAAAATTGTGAAGATG+AGG | + | chr3.3:95452550-95452569 | MS.gene014230:CDS | 40.0% | |
| CTGCATAAGATCTGAATCAG+AGG | + | chr3.3:95452737-95452756 | MS.gene014230:CDS | 40.0% | |
| CTGGAAAACGTAAAAGGACT+TGG | - | chr3.3:95453741-95453760 | None:intergenic | 40.0% | |
| GACTTGGAAAACAAAGACGA+TGG | + | chr3.3:95452371-95452390 | MS.gene014230:CDS | 40.0% | |
| GATAAAGGAACAGCGACATT+GGG | + | chr3.3:95454297-95454316 | MS.gene014230:CDS | 40.0% | |
| GATGCCAAACTCAAAACTCT+TGG | + | chr3.3:95451761-95451780 | MS.gene014230:CDS | 40.0% | |
| GCAGAACAAAACAAAGAGGA+TGG | - | chr3.3:95453236-95453255 | None:intergenic | 40.0% | |
| GCGTTTAGATTTCTTCTCCT+TGG | - | chr3.3:95451227-95451246 | None:intergenic | 40.0% | |
| GCTTACGATAGAGCTGAAAA+TGG | + | chr3.3:95455541-95455560 | MS.gene014230:CDS | 40.0% | |
| GGAATTAACATCACCTGACT+TGG | - | chr3.3:95451395-95451414 | None:intergenic | 40.0% | |
| GGCATAACATGAACAACAAC+GGG | - | chr3.3:95451814-95451833 | None:intergenic | 40.0% | |
| GGTTTCAACGTTCAAACCTA+TGG | - | chr3.3:95453135-95453154 | None:intergenic | 40.0% | |
| GTTCATTCTTGGCATAAGAC+AGG | - | chr3.3:95454541-95454560 | None:intergenic | 40.0% | |
| TCACTCTGTATGTATTCTGC+AGG | + | chr3.3:95451333-95451352 | MS.gene014230:intron | 40.0% | |
| TCAGGAGCAATATTGTTGCA+TGG | + | chr3.3:95454204-95454223 | MS.gene014230:intron | 40.0% | |
| TCGATGATGAGTGCAGAAAT+TGG | + | chr3.3:95451541-95451560 | MS.gene014230:intron | 40.0% | |
| TGATGACAATGGTTCTTGTG+CGG | + | chr3.3:95452340-95452359 | MS.gene014230:CDS | 40.0% | |
| TGTGTTAGGTCTGATGACAA+TGG | + | chr3.3:95452329-95452348 | MS.gene014230:CDS | 40.0% | |
| TTACTTGGCAAAGTTCCAGA+TGG | + | chr3.3:95455487-95455506 | MS.gene014230:CDS | 40.0% | |
| TTCAACGTTCAAACCTATGG+AGG | - | chr3.3:95453132-95453151 | None:intergenic | 40.0% | |
| ! | AATTCGGTGAGGAAAATGAG+AGG | - | chr3.3:95451835-95451854 | None:intergenic | 40.0% |
| ! | AATTTGCAAGTAGTGGGGAA+TGG | + | chr3.3:95454012-95454031 | MS.gene014230:CDS | 40.0% |
| ! | ACAACACTTTTCATGCGCAT+TGG | - | chr3.3:95453563-95453582 | None:intergenic | 40.0% |
| ! | ATTGTTGTGAATAAGGGTGC+TGG | + | chr3.3:95453518-95453537 | MS.gene014230:CDS | 40.0% |
| ! | CAAGTCCTTTTACGTTTTCC+AGG | + | chr3.3:95453739-95453758 | MS.gene014230:intron | 40.0% |
| ! | CGGAGAGTTTGCAAAGTATT+AGG | + | chr3.3:95452888-95452907 | MS.gene014230:CDS | 40.0% |
| ! | CTTGATAGCTTCCTATGTTC+TGG | + | chr3.3:95453690-95453709 | MS.gene014230:intron | 40.0% |
| ! | CTTTACATCAAAGGCATGTC+CGG | - | chr3.3:95451963-95451982 | None:intergenic | 40.0% |
| ! | GGCAATGTGCACAAATCTTT+TGG | + | chr3.3:95452935-95452954 | MS.gene014230:CDS | 40.0% |
| ! | TGAGTTTGGCATCAGTTTTG+GGG | - | chr3.3:95451754-95451773 | None:intergenic | 40.0% |
| !! | CAGAAATTGGCTGATTTGGA+GGG | + | chr3.3:95451554-95451573 | MS.gene014230:intron | 40.0% |
| !! | CTTCTAACGGATTGAAGGAA+AGG | + | chr3.3:95451666-95451685 | MS.gene014230:CDS | 40.0% |
| !! | GAGTGTTGATGACCAAATTG+TGG | + | chr3.3:95452707-95452726 | MS.gene014230:CDS | 40.0% |
| !! | GTTGATGACCAAATTGTGGA+CGG | + | chr3.3:95452711-95452730 | MS.gene014230:CDS | 40.0% |
| !! | TACGGACAGCGTATTTTGAA+GGG | + | chr3.3:95453845-95453864 | MS.gene014230:CDS | 40.0% |
| !! | TGTGGGAGTATCTTGTAAGA+GGG | + | chr3.3:95454671-95454690 | MS.gene014230:intron | 40.0% |
| !! | TTGTGGGAGTATCTTGTAAG+AGG | + | chr3.3:95454670-95454689 | MS.gene014230:intron | 40.0% |
| !! | TTTTGGGGACAAGGTATATC+AGG | - | chr3.3:95452518-95452537 | None:intergenic | 40.0% |
| !!! | GAGACCAAGAGTTTTGAGTT+TGG | - | chr3.3:95451768-95451787 | None:intergenic | 40.0% |
| !!! | GTACATACCTGTTGGTCTTT+TGG | + | chr3.3:95454891-95454910 | MS.gene014230:CDS | 40.0% |
| !!! | TATATGCTGTGTTTTAGGGG+TGG | + | chr3.3:95454822-95454841 | MS.gene014230:intron | 40.0% |
| AAACGTGAACGTCTTCAGGT+AGG | + | chr3.3:95451253-95451272 | MS.gene014230:intron | 45.0% | |
| ACCACATCCAAAAGACCAAC+AGG | - | chr3.3:95454901-95454920 | None:intergenic | 45.0% | |
| ACTCAAACGTGAACGTCTTC+AGG | + | chr3.3:95451249-95451268 | MS.gene014230:CDS | 45.0% | |
| ACTTTGCAAACTCTCCGGAA+AGG | - | chr3.3:95452885-95452904 | None:intergenic | 45.0% | |
| ATCAAGCATGTGGCAAGTTC+AGG | - | chr3.3:95454084-95454103 | None:intergenic | 45.0% | |
| CAGGCAATTCCCACATAGTT+TGG | + | chr3.3:95453057-95453076 | MS.gene014230:intron | 45.0% | |
| CTGTTGGAAATCTCCCTTTC+CGG | + | chr3.3:95452868-95452887 | MS.gene014230:CDS | 45.0% | |
| CTTTGCAAACTCTCCGGAAA+GGG | - | chr3.3:95452884-95452903 | None:intergenic | 45.0% | |
| GAAAGGGAGATTTCCAACAG+TGG | - | chr3.3:95452868-95452887 | None:intergenic | 45.0% | |
| GAAGACGTTCACGTTTGAGT+TGG | - | chr3.3:95451249-95451268 | None:intergenic | 45.0% | |
| GAGATTTCCAACAGTGGTCA+AGG | - | chr3.3:95452862-95452881 | None:intergenic | 45.0% | |
| GATGAGGAGACGGAAAATGA+AGG | + | chr3.3:95452566-95452585 | MS.gene014230:CDS | 45.0% | |
| GCCCCTTCAGATTTCAGAAA+AGG | - | chr3.3:95451587-95451606 | None:intergenic | 45.0% | |
| GCCGTCAAAAACAAAGATGG+TGG | + | chr3.3:95452299-95452318 | MS.gene014230:CDS | 45.0% | |
| GCTAGTGCAGTGACAATACA+TGG | + | chr3.3:95453913-95453932 | MS.gene014230:CDS | 45.0% | |
| GGACGCCAATTTATTCGTTG+TGG | - | chr3.3:95454925-95454944 | None:intergenic | 45.0% | |
| GGTGCAAAAGTAAAGCCATC+TGG | - | chr3.3:95455505-95455524 | None:intergenic | 45.0% | |
| GTAGTAGCAGTAGTTCGATC+GGG | - | chr3.3:95451169-95451188 | None:intergenic | 45.0% | |
| TATACGTAATCCCAGTCAGC+AGG | - | chr3.3:95453967-95453986 | None:intergenic | 45.0% | |
| TCAAGCATGTGGCAAGTTCA+GGG | - | chr3.3:95454083-95454102 | None:intergenic | 45.0% | |
| TCGTTTAACAGTATGGGACC+AGG | - | chr3.3:95455430-95455449 | None:intergenic | 45.0% | |
| TGACAATACATGGCAGGTCA+CGG | + | chr3.3:95453923-95453942 | MS.gene014230:CDS | 45.0% | |
| TGAGTGTATAAGGGGTCTCT+TGG | + | chr3.3:95454631-95454650 | MS.gene014230:intron | 45.0% | |
| TGTCCAAACATTGCCAAGTC+AGG | + | chr3.3:95451379-95451398 | MS.gene014230:CDS | 45.0% | |
| TTCTGCTGTCTTCGGATAGA+GGG | - | chr3.3:95455296-95455315 | None:intergenic | 45.0% | |
| TTGTGCGGTTACATCTGACT+TGG | + | chr3.3:95452355-95452374 | MS.gene014230:CDS | 45.0% | |
| TTTCAAAACTCTGCTGGGAC+TGG | + | chr3.3:95453189-95453208 | MS.gene014230:intron | 45.0% | |
| TTTCTGCTGTCTTCGGATAG+AGG | - | chr3.3:95455297-95455316 | None:intergenic | 45.0% | |
| TTTCTTCTCCTTGGCGAGAA+CGG | - | chr3.3:95451218-95451237 | None:intergenic | 45.0% | |
| !! | GCAGAAATTGGCTGATTTGG+AGG | + | chr3.3:95451553-95451572 | MS.gene014230:intron | 45.0% |
| !! | GTACGGACAGCGTATTTTGA+AGG | + | chr3.3:95453844-95453863 | MS.gene014230:CDS | 45.0% |
| !! | GTTCAGGGCATTCAGTTTTG+TGG | - | chr3.3:95454068-95454087 | None:intergenic | 45.0% |
| !! | TCACCTGACTTGGCAATGTT+TGG | - | chr3.3:95451385-95451404 | None:intergenic | 45.0% |
| !!! | ACCTGTTGGTCTTTTGGATG+TGG | + | chr3.3:95454897-95454916 | MS.gene014230:CDS | 45.0% |
| !!! | AAATTTTATTACTAAATTAT+TGG | - | chr3.3:95453170-95453189 | None:intergenic | 5.0% |
| !!! | ATCTATTAATTTTTTTAAAA+TGG | + | chr3.3:95455095-95455114 | MS.gene014230:intron | 5.0% |
| AGAACGGGAGGTTTGTCGTT+AGG | - | chr3.3:95451202-95451221 | None:intergenic | 50.0% | |
| AGCCGTCATCATCAGACTGA+TGG | - | chr3.3:95452406-95452425 | None:intergenic | 50.0% | |
| AGGTTTGTCGTTAGGAGCAG+AGG | - | chr3.3:95451194-95451213 | None:intergenic | 50.0% | |
| CATTGTCGTGTCAGCGTTTC+GGG | + | chr3.3:95451935-95451954 | MS.gene014230:intron | 50.0% | |
| CCATTGTCGTGTCAGCGTTT+CGG | + | chr3.3:95451934-95451953 | MS.gene014230:intron | 50.0% | |
| CGACATTGGGACATCAGTTC+TGG | + | chr3.3:95454310-95454329 | MS.gene014230:CDS | 50.0% | |
| GGATGACCTTGAGACACTGA+TGG | + | chr3.3:95454963-95454982 | MS.gene014230:CDS | 50.0% | |
| GGCGTCCACCATCTTACTAT+GGG | + | chr3.3:95454938-95454957 | MS.gene014230:CDS | 50.0% | |
| GGGCACATCCAGATACTGTA+GGG | + | chr3.3:95453423-95453442 | MS.gene014230:CDS | 50.0% | |
| GTCCACCATCTTACTATGGG+CGG | + | chr3.3:95454941-95454960 | MS.gene014230:CDS | 50.0% | |
| GTGCAGTGACAATACATGGC+AGG | + | chr3.3:95453917-95453936 | MS.gene014230:CDS | 50.0% | |
| TCATCCCGCCCATAGTAAGA+TGG | - | chr3.3:95454949-95454968 | None:intergenic | 50.0% | |
| TCCACCATCTTACTATGGGC+GGG | + | chr3.3:95454942-95454961 | MS.gene014230:CDS | 50.0% | |
| TGCAGCTTCCGTCCACAATT+TGG | - | chr3.3:95452722-95452741 | None:intergenic | 50.0% | |
| TGGCGTCCACCATCTTACTA+TGG | + | chr3.3:95454937-95454956 | MS.gene014230:CDS | 50.0% | |
| TTCTTCTCCTTGGCGAGAAC+GGG | - | chr3.3:95451217-95451236 | None:intergenic | 50.0% | |
| ! | CGCCATCAGTCTGATGATGA+CGG | + | chr3.3:95452401-95452420 | MS.gene014230:CDS | 50.0% |
| ! | CTATAGCAAGCCTGCTGACT+GGG | + | chr3.3:95453954-95453973 | MS.gene014230:CDS | 50.0% |
| !! | CTGATGATGACGGCTCTTGT+GGG | + | chr3.3:95452411-95452430 | MS.gene014230:CDS | 50.0% |
| !! | GGACAGCGTATTTTGAAGGG+AGG | + | chr3.3:95453848-95453867 | MS.gene014230:CDS | 50.0% |
| !! | TCTGATGATGACGGCTCTTG+TGG | + | chr3.3:95452410-95452429 | MS.gene014230:CDS | 50.0% |
| !! | TGATGATGACGGCTCTTGTG+GGG | + | chr3.3:95452412-95452431 | MS.gene014230:CDS | 50.0% |
| !! | TTTTAGGGGTGGAGACTACC+AGG | + | chr3.3:95454833-95454852 | MS.gene014230:intron | 50.0% |
| ACAGCTCGCCCTACAGTATC+TGG | - | chr3.3:95453434-95453453 | None:intergenic | 55.0% | |
| ACCACGGGCAATCAAGCATG+TGG | - | chr3.3:95454094-95454113 | None:intergenic | 55.0% | |
| CCAGGCGGTTCTTGTTGGAA+TGG | + | chr3.3:95454851-95454870 | MS.gene014230:CDS | 55.0% | |
| CCATTCCAACAAGAACCGCC+TGG | - | chr3.3:95454854-95454873 | None:intergenic | 55.0% | |
| CCGAAACGCTGACACGACAA+TGG | - | chr3.3:95451937-95451956 | None:intergenic | 55.0% | |
| CTGAAGGGGCTTGCCCTTAT+GGG | + | chr3.3:95451597-95451616 | MS.gene014230:CDS | 55.0% | |
| CTTGCACCCTTGACCACTGT+TGG | + | chr3.3:95452852-95452871 | MS.gene014230:CDS | 55.0% | |
| GACTACCAGGCGGTTCTTGT+TGG | + | chr3.3:95454846-95454865 | MS.gene014230:CDS | 55.0% | |
| GCTATAGCAAGCCTGCTGAC+TGG | + | chr3.3:95453953-95453972 | MS.gene014230:CDS | 55.0% | |
| GGGGCACATCCAGATACTGT+AGG | + | chr3.3:95453422-95453441 | MS.gene014230:CDS | 55.0% | |
| GTAGCAGTAGTTCGATCGGG+AGG | - | chr3.3:95451166-95451185 | None:intergenic | 55.0% | |
| TACCCAGTCAGCTGCAGAGT+CGG | - | chr3.3:95454992-95455011 | None:intergenic | 55.0% | |
| TCCCGCCCATAGTAAGATGG+TGG | - | chr3.3:95454946-95454965 | None:intergenic | 55.0% | |
| TCTGAAGGGGCTTGCCCTTA+TGG | + | chr3.3:95451596-95451615 | MS.gene014230:CDS | 55.0% | |
| ATGACTGCTGTGTGCAGCCC+TGG | + | chr3.3:95454263-95454282 | MS.gene014230:intron | 60.0% | |
| CAAACCTCCCGTTCTCGCCA+AGG | + | chr3.3:95451207-95451226 | MS.gene014230:CDS | 60.0% | |
| CGGAGGCCATCAGTGTCTCA+AGG | - | chr3.3:95454972-95454991 | None:intergenic | 60.0% | |
| CTCCGACTCTGCAGCTGACT+GGG | + | chr3.3:95454987-95455006 | MS.gene014230:CDS | 60.0% | |
| GAGGGTGGCGAGGATGATTC+TGG | + | chr3.3:95451085-95451104 | MS.gene014230:CDS | 60.0% | |
| GCAGTAGTTCGATCGGGAGG+AGG | - | chr3.3:95451163-95451182 | None:intergenic | 60.0% | |
| GCCACATGCTTGATTGCCCG+TGG | + | chr3.3:95454090-95454109 | MS.gene014230:CDS | 60.0% | |
| TAGGGGTGGAGACTACCAGG+CGG | + | chr3.3:95454836-95454855 | MS.gene014230:intron | 60.0% | |
| TTCTCCTTGGCGAGAACGGG+AGG | - | chr3.3:95451214-95451233 | None:intergenic | 60.0% | |
| CCAGTCAGCTGCAGAGTCGG+AGG | - | chr3.3:95454989-95455008 | None:intergenic | 65.0% | |
| CCTCCGACTCTGCAGCTGAC+TGG | + | chr3.3:95454986-95455005 | MS.gene014230:CDS | 65.0% | |
| CGTGTCAGCGTTTCGGGCAC+CGG | + | chr3.3:95451941-95451960 | MS.gene014230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95451082 | 95455567 | 95451082 | ID=MS.gene014230 |
| chr3.3 | mRNA | 95451082 | 95455567 | 95451082 | ID=MS.gene014230.t1;Parent=MS.gene014230 |
| chr3.3 | exon | 95451082 | 95451270 | 95451082 | ID=MS.gene014230.t1.exon1;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95451082 | 95451270 | 95451082 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95451355 | 95451471 | 95451355 | ID=MS.gene014230.t1.exon2;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95451355 | 95451471 | 95451355 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95451557 | 95451790 | 95451557 | ID=MS.gene014230.t1.exon3;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95451557 | 95451790 | 95451557 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95452281 | 95452587 | 95452281 | ID=MS.gene014230.t1.exon4;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95452281 | 95452587 | 95452281 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95452703 | 95452959 | 95452703 | ID=MS.gene014230.t1.exon5;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95452703 | 95452959 | 95452703 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95453353 | 95453625 | 95453353 | ID=MS.gene014230.t1.exon6;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95453353 | 95453625 | 95453353 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95453844 | 95454125 | 95453844 | ID=MS.gene014230.t1.exon7;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95453844 | 95454125 | 95453844 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95454280 | 95454400 | 95454280 | ID=MS.gene014230.t1.exon8;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95454280 | 95454400 | 95454280 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95454839 | 95455008 | 95454839 | ID=MS.gene014230.t1.exon9;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95454839 | 95455008 | 95454839 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| chr3.3 | exon | 95455469 | 95455567 | 95455469 | ID=MS.gene014230.t1.exon10;Parent=MS.gene014230.t1 |
| chr3.3 | CDS | 95455469 | 95455567 | 95455469 | ID=cds.MS.gene014230.t1;Parent=MS.gene014230.t1 |
| Gene Sequence |
| Protein sequence |
