Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004699.t1 | XP_003590707.2 | 95.2 | 1258 | 60 | 0 | 1 | 1258 | 1 | 1258 | 0.00E+00 | 2330.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004699.t1 | D1KF50 | 62.7 | 1014 | 347 | 9 | 256 | 1258 | 154 | 1147 | 0.0e+00 | 1203.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004699.t1 | G7I2M0 | 95.2 | 1258 | 60 | 0 | 1 | 1258 | 1 | 1258 | 0.0e+00 | 2330.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004699 | MS.gene52223 | PPI |
| MS.gene004699 | MS.gene023855 | PPI |
| MS.gene004699 | MS.gene047400 | PPI |
| MS.gene004699 | MS.gene47513 | PPI |
| MS.gene004699 | MS.gene004214 | PPI |
| MS.gene004699 | MS.gene68170 | PPI |
| MS.gene004699 | MS.gene39588 | PPI |
| MS.gene004699 | MS.gene79893 | PPI |
| MS.gene004699 | MS.gene26565 | PPI |
| MS.gene004699 | MS.gene75670 | PPI |
| MS.gene004699 | MS.gene27709 | PPI |
| MS.gene058013 | MS.gene004699 | PPI |
| MS.gene004699 | MS.gene008730 | PPI |
| MS.gene063118 | MS.gene004699 | PPI |
| MS.gene004699 | MS.gene77531 | PPI |
| MS.gene004699 | MS.gene003428 | PPI |
| MS.gene01518 | MS.gene004699 | PPI |
| MS.gene004699 | MS.gene045358 | PPI |
| MS.gene004699 | MS.gene014230 | PPI |
| MS.gene004699 | MS.gene002540 | PPI |
| MS.gene004699 | MS.gene68766 | PPI |
| MS.gene004699 | MS.gene063116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004699.t1 | MTR_1g072800 | 96.184 | 1258 | 48 | 0 | 1 | 1258 | 1 | 1258 | 0.0 | 2452 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004699.t1 | AT4G25120 | 62.747 | 1012 | 350 | 8 | 256 | 1258 | 154 | 1147 | 0.0 | 1271 |
Find 258 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATTGCAAGAGTGTTTA+AGG | 0.165020 | 1.1:-54925800 | None:intergenic |
| TAGCCCATTTATGGAATATA+TGG | 0.165449 | 1.1:-54940884 | None:intergenic |
| CCCTCTTACCTCAATGAATT+TGG | 0.168329 | 1.1:-54937919 | None:intergenic |
| CCTTATCCTTGAACTGTTTA+GGG | 0.171079 | 1.1:-54926884 | None:intergenic |
| TCATCATCTTCTAGAATTTC+AGG | 0.199433 | 1.1:+54939323 | MS.gene004699:CDS |
| CATAATAAAATAACAATTAT+TGG | 0.220639 | 1.1:+54928104 | MS.gene004699:CDS |
| TTTCCCATATATTCCATAAA+TGG | 0.222202 | 1.1:+54940880 | MS.gene004699:CDS |
| AAAATGCAAAACCAGGAAAA+TGG | 0.229412 | 1.1:+54924154 | None:intergenic |
| ATCTTTAGTGCAAAGATTTC+TGG | 0.234316 | 1.1:+54932758 | MS.gene004699:CDS |
| AATATCAATTTGTTCCAAAA+TGG | 0.235781 | 1.1:-54924916 | None:intergenic |
| TTCAATGGAGCTGACATTTC+CGG | 0.242122 | 1.1:+54928276 | MS.gene004699:CDS |
| TGATTGTTGAGCAAATTATT+TGG | 0.254965 | 1.1:-54940654 | None:intergenic |
| GTTCTTACTGATAACTCTTC+TGG | 0.270679 | 1.1:+54928559 | MS.gene004699:CDS |
| GCCTTATCCTTGAACTGTTT+AGG | 0.277204 | 1.1:-54926885 | None:intergenic |
| GCAACAATCTGAGGCTGATT+TGG | 0.283737 | 1.1:+54940623 | MS.gene004699:CDS |
| AGCTCCATTGAAACTGAAAA+TGG | 0.285422 | 1.1:-54928265 | None:intergenic |
| ATGCGTGGAGGCGGGATGTT+GGG | 0.294744 | 1.1:-54946678 | None:intergenic |
| AGAGAGACCTCTTTGTAGTT+TGG | 0.306978 | 1.1:-54928324 | None:intergenic |
| AGATTTCTGGTACTTATAAA+AGG | 0.310724 | 1.1:+54932771 | MS.gene004699:CDS |
| ATTAATGTTTCTAAAGATAT+AGG | 0.315310 | 1.1:+54924873 | MS.gene004699:CDS |
| GTTTGTTCTTCTTCTGTCTT+AGG | 0.318206 | 1.1:-54943915 | None:intergenic |
| AATCCTCCGGATTCTTTCCT+TGG | 0.318685 | 1.1:-54924648 | None:intergenic |
| GGACCAGCTACAATCATTAA+AGG | 0.319770 | 1.1:-54925443 | None:intergenic |
| TGTCGTTGGAAATGTGGATA+TGG | 0.323447 | 1.1:+54924842 | MS.gene004699:CDS |
| CCATGCAATACAAGCTTCTA+AGG | 0.330736 | 1.1:+54928069 | MS.gene004699:CDS |
| TCAGAGAAAGTCAGGATTCA+TGG | 0.333949 | 1.1:+54928009 | MS.gene004699:CDS |
| AGAAGTTCTTCCTGAGGCTT+TGG | 0.336152 | 1.1:-54927654 | None:intergenic |
| CATTCTCAATCTTTAACTTC+AGG | 0.336578 | 1.1:-54945936 | None:intergenic |
| ACCTTATCTAGCAACCTCTT+TGG | 0.342277 | 1.1:-54940927 | None:intergenic |
| AAGAAAACCTTTCCACTTCC+CGG | 0.344425 | 1.1:-54925464 | None:intergenic |
| GCACCCAAGTTTCTTCAAAT+AGG | 0.347138 | 1.1:-54946647 | None:intergenic |
| TTGTACCGTTGATATGAGTT+TGG | 0.348775 | 1.1:+54925220 | MS.gene004699:CDS |
| CGTGAAATGGGCAATCAAAT+AGG | 0.354828 | 1.1:+54927686 | MS.gene004699:CDS |
| ACTCAGAGACATCATCTAAT+AGG | 0.355295 | 1.1:-54937887 | None:intergenic |
| TTGTGTAGGGTGATATAAAT+AGG | 0.357107 | 1.1:+54940526 | MS.gene004699:intron |
| ACATCTGAATTCTTAATATA+TGG | 0.357459 | 1.1:+54926747 | MS.gene004699:CDS |
| ACCAAATTCATTGAGGTAAG+AGG | 0.360611 | 1.1:+54937918 | MS.gene004699:CDS |
| ATTAAAATCTTGTAATGCTC+TGG | 0.365675 | 1.1:+54927838 | MS.gene004699:CDS |
| ACTGGTGACATGCTTTGTTT+TGG | 0.369252 | 1.1:+54925272 | MS.gene004699:CDS |
| CGGGCAATTGTTGATGTTGA+TGG | 0.371200 | 1.1:+54936009 | MS.gene004699:CDS |
| CTCATATAGTCGAGTCTTCA+AGG | 0.372676 | 1.1:+54932505 | MS.gene004699:CDS |
| ATGTCATGATGGACTCAAAT+TGG | 0.374073 | 1.1:+54939192 | MS.gene004699:CDS |
| ATAATAATGTACCTCAACTA+TGG | 0.377602 | 1.1:-54939014 | None:intergenic |
| TTCTGCAGAATATCGTGAAA+TGG | 0.382371 | 1.1:+54927673 | MS.gene004699:CDS |
| ATTGCATGGCACTAGTATCT+TGG | 0.383850 | 1.1:-54928055 | None:intergenic |
| TTCCCATATATTCCATAAAT+GGG | 0.395687 | 1.1:+54940881 | MS.gene004699:CDS |
| TAGTAACGTTGACATGGGTT+TGG | 0.399138 | 1.1:+54925028 | MS.gene004699:CDS |
| ATCTCCTATTTGAAGAAACT+TGG | 0.400100 | 1.1:+54946643 | MS.gene004699:CDS |
| TTGCAGAGGTTCCGTTGAAC+AGG | 0.400611 | 1.1:+54924496 | MS.gene004699:CDS |
| CGCGGTGAAAGCAGCTGGGC+AGG | 0.401394 | 1.1:+54925148 | MS.gene004699:CDS |
| AGTAACGTTGACATGGGTTT+GGG | 0.403012 | 1.1:+54925029 | MS.gene004699:CDS |
| AAAGACCCCTAAACAGTTCA+AGG | 0.407264 | 1.1:+54926878 | MS.gene004699:CDS |
| TCGTCATTTCCTATATCCTT+AGG | 0.407997 | 1.1:-54925065 | None:intergenic |
| TTTAATGATTGTAGCTGGTC+CGG | 0.408518 | 1.1:+54925445 | MS.gene004699:CDS |
| GACCAGCTACAATCATTAAA+GGG | 0.409352 | 1.1:-54925442 | None:intergenic |
| GAGGCGGGATGTTGGGGTCA+TGG | 0.411693 | 1.1:-54946671 | None:intergenic |
| TGCCGTTTGCTTCCCAGCTA+TGG | 0.414873 | 1.1:-54925866 | None:intergenic |
| TGTACCGTTGATATGAGTTT+GGG | 0.415331 | 1.1:+54925221 | MS.gene004699:CDS |
| AAACGTATTGGAGCCATAGC+TGG | 0.416341 | 1.1:+54925853 | MS.gene004699:CDS |
| AAATCCGCGGTGAAAGCAGC+TGG | 0.418520 | 1.1:+54925143 | MS.gene004699:CDS |
| ATAAACGTGCTCATCTTATG+AGG | 0.419539 | 1.1:+54945258 | MS.gene004699:CDS |
| AATTATTGGTGACGATGATC+AGG | 0.421373 | 1.1:+54928118 | MS.gene004699:CDS |
| GGACATTGTCTTCATAGTTA+AGG | 0.424282 | 1.1:+54938200 | MS.gene004699:CDS |
| TGCAAATTCTGCAAGCTCAC+TGG | 0.424638 | 1.1:-54940691 | None:intergenic |
| TCCTATCCCGAAAAGCCATT+TGG | 0.425119 | 1.1:-54928937 | None:intergenic |
| CATTGAGGTAAGAGGGGAAA+AGG | 0.429872 | 1.1:+54937926 | MS.gene004699:CDS |
| ACCCCTTTAATGATTGTAGC+TGG | 0.429977 | 1.1:+54925440 | MS.gene004699:CDS |
| TGCTTCATCACAGCTTAAGC+TGG | 0.430695 | 1.1:-54945081 | None:intergenic |
| ACATCCGAGGTGGAGGGGTT+AGG | 0.432940 | 1.1:+54924783 | MS.gene004699:CDS |
| AAGGAAATGTCAGAAGATAA+AGG | 0.433329 | 1.1:+54937945 | MS.gene004699:CDS |
| GTCATTGCAAGAGTGTTTAA+GGG | 0.435670 | 1.1:-54925799 | None:intergenic |
| AGCCCATTTATGGAATATAT+GGG | 0.435807 | 1.1:-54940883 | None:intergenic |
| CAACAAATCAGTGGTACAAC+AGG | 0.439604 | 1.1:-54940592 | None:intergenic |
| TCGTTAAAACCTTCCTTCCA+TGG | 0.439801 | 1.1:-54934328 | None:intergenic |
| ATTGTAGCTGGTCCGGGAAG+TGG | 0.442729 | 1.1:+54925452 | MS.gene004699:CDS |
| GATGCGTGGAGGCGGGATGT+TGG | 0.443116 | 1.1:-54946679 | None:intergenic |
| CCCTAAACAGTTCAAGGATA+AGG | 0.444144 | 1.1:+54926884 | MS.gene004699:CDS |
| ACAGTTATCTGCTGAATGAT+TGG | 0.448593 | 1.1:-54928757 | None:intergenic |
| GAAATACCTTCTTGAGCAAC+GGG | 0.450690 | 1.1:+54935990 | MS.gene004699:intron |
| TCCACGGATTTGTGCTCAAA+GGG | 0.458460 | 1.1:-54924939 | None:intergenic |
| TTCACTGTAGTTTGAGTGAA+AGG | 0.459853 | 1.1:+54924562 | MS.gene004699:CDS |
| CCATTTCAGGCCAAAGCCTC+AGG | 0.460475 | 1.1:+54927644 | MS.gene004699:intron |
| CACCCCAGCTTCTTTCTCCA+CGG | 0.461142 | 1.1:-54924955 | None:intergenic |
| TTGAGCAAATTATTTGGCAC+AGG | 0.462449 | 1.1:-54940648 | None:intergenic |
| TTAAAGATTGAGAATGCAAT+GGG | 0.465257 | 1.1:+54945943 | MS.gene004699:CDS |
| AAATGCAAAACCAGGAAAAT+GGG | 0.465715 | 1.1:+54924155 | None:intergenic |
| AAGGGTTTGTGCGACGTTGA+TGG | 0.469393 | 1.1:+54924435 | MS.gene004699:CDS |
| TCTGCAGAATATCGTGAAAT+GGG | 0.469910 | 1.1:+54927674 | MS.gene004699:CDS |
| CCTTTGAAATCGTGTAATAG+AGG | 0.470147 | 1.1:-54938971 | None:intergenic |
| TGGTGAAGAGATGGATGAAT+CGG | 0.470569 | 1.1:-54924233 | None:intergenic |
| TTGAACAGGCTACATTCATC+GGG | 0.470832 | 1.1:+54924510 | MS.gene004699:CDS |
| TTGAGGAAGGAGTGGCTTTG+AGG | 0.473850 | 1.1:-54924200 | None:intergenic |
| TCATTTGTCCTGTAGGCAAA+AGG | 0.475606 | 1.1:+54938168 | MS.gene004699:intron |
| AGTGCTGTTTCTGAGGGTAT+AGG | 0.477579 | 1.1:+54925248 | MS.gene004699:CDS |
| CATGATGGACTCAAATTGGC+AGG | 0.482295 | 1.1:+54939196 | MS.gene004699:CDS |
| GAAACTCCAAGGAAAGAATC+CGG | 0.483978 | 1.1:+54924642 | MS.gene004699:CDS |
| ATTACGAAAGGAAATAAATC+CGG | 0.484333 | 1.1:-54928295 | None:intergenic |
| TTAATGATTGTAGCTGGTCC+GGG | 0.484823 | 1.1:+54925446 | MS.gene004699:CDS |
| GATTGAGAATGCAATGGGTT+CGG | 0.485397 | 1.1:+54945948 | MS.gene004699:CDS |
| CGTTAAAACCTTCCTTCCAT+GGG | 0.486757 | 1.1:-54934327 | None:intergenic |
| CTCCACGGATTTGTGCTCAA+AGG | 0.487755 | 1.1:-54924940 | None:intergenic |
| GGGAACCAGTGCTGTTTCTG+AGG | 0.489910 | 1.1:+54925241 | MS.gene004699:CDS |
| TCAGCAGATAACTGTTCCTA+TGG | 0.489914 | 1.1:+54928765 | MS.gene004699:CDS |
| AGATGAGCACGTTTATCAGC+AGG | 0.489996 | 1.1:-54945251 | None:intergenic |
| CCAAATTCATTGAGGTAAGA+GGG | 0.490121 | 1.1:+54937919 | MS.gene004699:CDS |
| GTTGAACAGGCTACATTCAT+CGG | 0.491263 | 1.1:+54924509 | MS.gene004699:CDS |
| TGATTCAGATTCAAATCCTC+CGG | 0.494256 | 1.1:-54924661 | None:intergenic |
| ATTCTTCAACTGACATCGCT+TGG | 0.495343 | 1.1:-54928536 | None:intergenic |
| CAACCTCTTTGGATCTTGAA+AGG | 0.496114 | 1.1:-54940916 | None:intergenic |
| TCCAAAGAGGTTGCTAGATA+AGG | 0.497008 | 1.1:+54940926 | MS.gene004699:CDS |
| GGCGTTAGATCATAGCTGTC+AGG | 0.498430 | 1.1:+54925169 | MS.gene004699:CDS |
| AAAATACCGTTTAACATTCA+CGG | 0.498668 | 1.1:+54928959 | MS.gene004699:CDS |
| TCTGCAAGAGGAACTCTCTT+CGG | 0.500691 | 1.1:-54924480 | None:intergenic |
| GGAACCAGTGCTGTTTCTGA+GGG | 0.501826 | 1.1:+54925242 | MS.gene004699:CDS |
| ATGTGGATAGCGAGACTACT+AGG | 0.503498 | 1.1:+54925321 | MS.gene004699:CDS |
| ACTAACTACACCGCTCTCGC+TGG | 0.503544 | 1.1:-54925009 | None:intergenic |
| TCAAGGATAAGGCAAAGAAA+TGG | 0.503978 | 1.1:+54926895 | MS.gene004699:CDS |
| GACACTGACTACCATTCATC+AGG | 0.504509 | 1.1:+54938061 | MS.gene004699:CDS |
| ACGTTGATGGTGCCAAGGGT+AGG | 0.504831 | 1.1:+54924448 | MS.gene004699:CDS |
| TCGAGCGAGGGCAGTGTCGT+TGG | 0.505389 | 1.1:+54924828 | MS.gene004699:CDS |
| GGGGTTAGGTCATAGTTGTC+AGG | 0.505448 | 1.1:+54924797 | MS.gene004699:CDS |
| GGAAATGTGGATATGGGATC+GGG | 0.505632 | 1.1:+54924849 | MS.gene004699:CDS |
| TAAGACGAGATGCGTGGAGG+CGG | 0.505673 | 1.1:-54946687 | None:intergenic |
| TCCTGCTGTTACTGCGGCGA+AGG | 0.505967 | 1.1:+54924596 | MS.gene004699:CDS |
| ACGGCAATGATTTCATAAGA+AGG | 0.508310 | 1.1:+54940724 | MS.gene004699:CDS |
| ACCAGACATCCACAATGGTT+GGG | 0.508385 | 1.1:+54925574 | MS.gene004699:intron |
| AGTGAAAACATCCGAGGTGG+AGG | 0.509567 | 1.1:+54924776 | MS.gene004699:CDS |
| AAGACGAGATGCGTGGAGGC+GGG | 0.509628 | 1.1:-54946686 | None:intergenic |
| GCCACGCCGTGAATGTTAAA+CGG | 0.512239 | 1.1:-54928965 | None:intergenic |
| AAGTATTTAGAATATTCCTC+TGG | 0.513130 | 1.1:-54925368 | None:intergenic |
| AAATCCGTGGAGAAAGAAGC+TGG | 0.516342 | 1.1:+54924951 | MS.gene004699:CDS |
| TCATATCAAAACTTGTTCAC+AGG | 0.521101 | 1.1:+54934360 | MS.gene004699:CDS |
| GTTTCTGAGGGTATAGGAAC+TGG | 0.523455 | 1.1:+54925254 | MS.gene004699:CDS |
| GTTAAAGATTGAGAATGCAA+TGG | 0.526126 | 1.1:+54945942 | MS.gene004699:CDS |
| TAACCTGCAGATAATTATGA+AGG | 0.528096 | 1.1:+54928674 | MS.gene004699:intron |
| TGGAAATGTGGATATGGGAT+CGG | 0.528301 | 1.1:+54924848 | MS.gene004699:CDS |
| AAAGCAAGAAGGCCATCAAA+AGG | 0.528621 | 1.1:+54940563 | MS.gene004699:CDS |
| ATGCTTCAAACAGCACTGCC+TGG | 0.528925 | 1.1:+54932470 | MS.gene004699:CDS |
| CGTTGATGGTGCCAAGGGTA+GGG | 0.529273 | 1.1:+54924449 | MS.gene004699:CDS |
| CGTGGAGAAAGAAGCTGGGG+TGG | 0.529946 | 1.1:+54924956 | MS.gene004699:CDS |
| ATTCTTACCTGCTTGTCAGT+TGG | 0.530991 | 1.1:-54945976 | None:intergenic |
| GGGGATAGATCATAGCTGTC+AGG | 0.532802 | 1.1:+54924977 | MS.gene004699:CDS |
| GCTGAAATGAGAAAACGTAT+TGG | 0.534321 | 1.1:+54925841 | MS.gene004699:CDS |
| TGCAATTCTCTACCGTAGGC+GGG | 0.534781 | 1.1:+54928794 | MS.gene004699:CDS |
| GTGGAGAAAGAAGCTGGGGT+GGG | 0.534922 | 1.1:+54924957 | MS.gene004699:CDS |
| TCCTTCGCCGCAGTAACAGC+AGG | 0.536233 | 1.1:-54924597 | None:intergenic |
| TACCAGACATCCACAATGGT+TGG | 0.537238 | 1.1:+54925573 | MS.gene004699:intron |
| CGGGATAGTTACCTGATGAA+TGG | 0.538107 | 1.1:-54938072 | None:intergenic |
| GGCTTTACTTCCATTCGAGA+AGG | 0.543410 | 1.1:+54932526 | MS.gene004699:CDS |
| GGCAACACCAACTGACAAGC+AGG | 0.544593 | 1.1:+54945969 | MS.gene004699:CDS |
| CCTTAGAAGCTTGTATTGCA+TGG | 0.544871 | 1.1:-54928069 | None:intergenic |
| CGATCTTACCCATGGAAGGA+AGG | 0.545407 | 1.1:+54934319 | MS.gene004699:CDS |
| TGCGTGGAGGCGGGATGTTG+GGG | 0.546170 | 1.1:-54946677 | None:intergenic |
| TGAAATTCTAGAAGATGATG+AGG | 0.547891 | 1.1:-54939321 | None:intergenic |
| CTTATCCTTGAACTGTTTAG+GGG | 0.548754 | 1.1:-54926883 | None:intergenic |
| AGAAATACCTTCTTGAGCAA+CGG | 0.549166 | 1.1:+54935989 | MS.gene004699:intron |
| GGAAAGAGAAGTTACTGGTA+TGG | 0.549677 | 1.1:-54924253 | None:intergenic |
| TCTCCTATTTGAAGAAACTT+GGG | 0.551625 | 1.1:+54946644 | MS.gene004699:CDS |
| TTTAGAATATTCCTCTGGCA+TGG | 0.553981 | 1.1:-54925363 | None:intergenic |
| AGGCTACATTCATCGGGGAA+TGG | 0.556340 | 1.1:+54924516 | MS.gene004699:CDS |
| AACGTATTGGAGCCATAGCT+GGG | 0.558250 | 1.1:+54925854 | MS.gene004699:CDS |
| CAATTGCCCGTTGCTCAAGA+AGG | 0.559238 | 1.1:-54935996 | None:intergenic |
| AAGCCTTTCAAGATCCAAAG+AGG | 0.559938 | 1.1:+54940913 | MS.gene004699:CDS |
| ATCAGGGAAAGCCTTCCAAA+TGG | 0.561106 | 1.1:+54928922 | MS.gene004699:CDS |
| TTTAGGGGTCTTTAGACCAT+CGG | 0.561700 | 1.1:-54926868 | None:intergenic |
| TGGAGAAAGAAGCTGGGGTG+GGG | 0.563657 | 1.1:+54924958 | MS.gene004699:CDS |
| GTGCGACGTTGATGGTGCCA+AGG | 0.563847 | 1.1:+54924443 | MS.gene004699:CDS |
| TGTAGTTAGTAACGTTGACA+TGG | 0.563921 | 1.1:+54925022 | MS.gene004699:CDS |
| GGGCAGTGTCGTTGGAAATG+TGG | 0.564061 | 1.1:+54924836 | MS.gene004699:CDS |
| AGCTGGTCCGGGAAGTGGAA+AGG | 0.565779 | 1.1:+54925457 | MS.gene004699:CDS |
| ACTTGAAATCACTAAATGAA+AGG | 0.565834 | 1.1:+54925387 | MS.gene004699:CDS |
| CAGGAGAGAGTCTCGAGCGA+GGG | 0.566241 | 1.1:+54924816 | MS.gene004699:CDS |
| GGATCATAAAGAAGAATATG+TGG | 0.566869 | 1.1:+54925304 | MS.gene004699:CDS |
| TTACTGGTATGGTGAAGAGA+TGG | 0.569422 | 1.1:-54924242 | None:intergenic |
| GAGAGAGTTTCCAGCGAGAG+CGG | 0.571871 | 1.1:+54924999 | MS.gene004699:CDS |
| CCTCTATTACACGATTTCAA+AGG | 0.573941 | 1.1:+54938971 | MS.gene004699:CDS |
| AGCCATAGCTGGGAAGCAAA+CGG | 0.574908 | 1.1:+54925864 | MS.gene004699:CDS |
| TTGCAATTCTCTACCGTAGG+CGG | 0.575068 | 1.1:+54928793 | MS.gene004699:CDS |
| GTTTGGAAAATCATTACGAA+AGG | 0.576451 | 1.1:-54928307 | None:intergenic |
| GAGAATTGCAATGTTGCCAT+AGG | 0.576740 | 1.1:-54928781 | None:intergenic |
| TTCTGCTATCATAACTTCTG+TGG | 0.577255 | 1.1:+54935581 | MS.gene004699:CDS |
| TTCTGCAGAAGTTCTTCCTG+AGG | 0.577530 | 1.1:-54927660 | None:intergenic |
| TCCCTTTGAGCACAAATCCG+TGG | 0.577927 | 1.1:+54924938 | MS.gene004699:CDS |
| GTGAAAACATCCGAGGTGGA+GGG | 0.578309 | 1.1:+54924777 | MS.gene004699:CDS |
| TGATAACTCTTCTGGATCCA+AGG | 0.579242 | 1.1:+54928567 | MS.gene004699:CDS |
| GAACTACAAATAAAGCAAGA+AGG | 0.581618 | 1.1:+54940552 | MS.gene004699:CDS |
| CGGAACTCGAACCCTACCCT+TGG | 0.582753 | 1.1:-54924460 | None:intergenic |
| ATGTTGCAATGACTCGTGCT+CGG | 0.583624 | 1.1:+54939150 | MS.gene004699:CDS |
| GCAGCGGAATGCAATTATTG+AGG | 0.584343 | 1.1:+54926779 | MS.gene004699:CDS |
| CATATCAAAACTTGTTCACA+GGG | 0.588123 | 1.1:+54934361 | MS.gene004699:CDS |
| GGCTGTTCCTGCTGTTACTG+CGG | 0.589590 | 1.1:+54924590 | MS.gene004699:CDS |
| TCCTCTGGCATGGTTCCACT+CGG | 0.589774 | 1.1:-54925353 | None:intergenic |
| TGAAAACATCCGAGGTGGAG+GGG | 0.589910 | 1.1:+54924778 | MS.gene004699:CDS |
| GTCGTTGGAAATGTGGATAT+GGG | 0.589941 | 1.1:+54924843 | MS.gene004699:CDS |
| GATGAGCACGTTTATCAGCA+GGG | 0.593743 | 1.1:-54945250 | None:intergenic |
| TTTGTCTACCAAATTCATTG+AGG | 0.593811 | 1.1:+54937911 | MS.gene004699:CDS |
| AATCCGTGGAGAAAGAAGCT+GGG | 0.595918 | 1.1:+54924952 | MS.gene004699:CDS |
| GAAGAGAGTTCCTCTTGCAG+AGG | 0.596350 | 1.1:+54924482 | MS.gene004699:CDS |
| CAAAACTCGCCCAACCATTG+TGG | 0.596725 | 1.1:-54925583 | None:intergenic |
| GATGAATGTAGCCTGTTCAA+CGG | 0.598121 | 1.1:-54924507 | None:intergenic |
| ATCCCGAAAAGCCATTTGGA+AGG | 0.598953 | 1.1:-54928933 | None:intergenic |
| GAAGAGATGGATGAATCGGA+AGG | 0.600187 | 1.1:-54924229 | None:intergenic |
| CGATTTCAAAGGTGTTGTGA+AGG | 0.602419 | 1.1:+54938982 | MS.gene004699:CDS |
| TGTAGGCAAAAGGTTTAGAG+TGG | 0.605902 | 1.1:+54938178 | MS.gene004699:intron |
| TTCAACGGAACCTCTGCAAG+AGG | 0.607424 | 1.1:-54924492 | None:intergenic |
| GAGAATGTTTCAAGCGAGAG+CGG | 0.608079 | 1.1:+54925191 | MS.gene004699:CDS |
| TTGATTGGAGAAGCGTCCGA+TGG | 0.609042 | 1.1:+54926852 | MS.gene004699:CDS |
| CATTAAAGGGGTAGAAACAT+CGG | 0.609117 | 1.1:-54925429 | None:intergenic |
| CGCAGTGAAAACATCCGAGG+TGG | 0.611066 | 1.1:+54924773 | MS.gene004699:CDS |
| CTTTGAAATCGTGTAATAGA+GGG | 0.611912 | 1.1:-54938970 | None:intergenic |
| TGAGCAAATTATTTGGCACA+GGG | 0.615285 | 1.1:-54940647 | None:intergenic |
| TCAGGAGAGAGTCTCGAGCG+AGG | 0.615530 | 1.1:+54924815 | MS.gene004699:CDS |
| TAAACGTGCTCATCTTATGA+GGG | 0.616051 | 1.1:+54945259 | MS.gene004699:CDS |
| CAAATTCATTGAGGTAAGAG+GGG | 0.620448 | 1.1:+54937920 | MS.gene004699:CDS |
| AATCCGCGGTGAAAGCAGCT+GGG | 0.620694 | 1.1:+54925144 | MS.gene004699:CDS |
| GGAGCGATCTTACCCATGGA+AGG | 0.621578 | 1.1:+54934315 | MS.gene004699:intron |
| TATGAGTCATCGTCACAACC+AGG | 0.624960 | 1.1:-54932488 | None:intergenic |
| GTAGTTAGTAACGTTGACAT+GGG | 0.625581 | 1.1:+54925023 | MS.gene004699:CDS |
| TGCGACGTTGATGGTGCCAA+GGG | 0.626337 | 1.1:+54924444 | MS.gene004699:CDS |
| CATAGGAGCGATCTTACCCA+TGG | 0.630306 | 1.1:+54934311 | MS.gene004699:intron |
| CAATTGTTGATGTTGATGGA+GGG | 0.630795 | 1.1:+54936013 | MS.gene004699:CDS |
| TATATGGTCAGTGGCAGCAG+CGG | 0.633600 | 1.1:+54926763 | MS.gene004699:CDS |
| GCAATTGTTGATGTTGATGG+AGG | 0.638860 | 1.1:+54936012 | MS.gene004699:CDS |
| GAAATTCTAGAAGATGATGA+GGG | 0.640072 | 1.1:-54939320 | None:intergenic |
| ACCGTTTAACATTCACGGCG+TGG | 0.640575 | 1.1:+54928964 | MS.gene004699:CDS |
| TATACCCTCAGAAACAGCAC+TGG | 0.644074 | 1.1:-54925246 | None:intergenic |
| AATTCTTAATATATGGTCAG+TGG | 0.645694 | 1.1:+54926754 | MS.gene004699:CDS |
| CAAGAAACATCACCCGCCTA+CGG | 0.646039 | 1.1:-54928806 | None:intergenic |
| GGACACTGCAGCCATAGTTG+AGG | 0.646812 | 1.1:+54939003 | MS.gene004699:CDS |
| ATTTCTTTCAGAAATCGTGA+AGG | 0.648622 | 1.1:-54939297 | None:intergenic |
| ATGACCTAACCCCTCCACCT+CGG | 0.650766 | 1.1:-54924787 | None:intergenic |
| AAGAGATGGATGAATCGGAA+GGG | 0.652168 | 1.1:-54924228 | None:intergenic |
| ACCAGCTACAATCATTAAAG+GGG | 0.653481 | 1.1:-54925441 | None:intergenic |
| CTACATTCATCGGGGAATGG+CGG | 0.655332 | 1.1:+54924519 | MS.gene004699:CDS |
| CTCCACACGTTACATTGTCG+AGG | 0.655441 | 1.1:+54928486 | MS.gene004699:CDS |
| GAATTTGCAGAGGCAAACAA+CGG | 0.656034 | 1.1:+54940705 | MS.gene004699:CDS |
| GACACAGAAAATGCAAAACC+AGG | 0.659017 | 1.1:+54924147 | None:intergenic |
| TGTGGCGAACATGATACCTG+AGG | 0.659089 | 1.1:+54935599 | MS.gene004699:CDS |
| TGAGCTTGCAGAATTTGCAG+AGG | 0.660838 | 1.1:+54940695 | MS.gene004699:CDS |
| ATCCGTGGAGAAAGAAGCTG+GGG | 0.663190 | 1.1:+54924953 | MS.gene004699:CDS |
| GTAGGCAAAAGGTTTAGAGT+GGG | 0.663253 | 1.1:+54938179 | MS.gene004699:intron |
| ACATTGCAATTCTCTACCGT+AGG | 0.665868 | 1.1:+54928790 | MS.gene004699:CDS |
| GGTTCCCAAACTCATATCAA+CGG | 0.666164 | 1.1:-54925225 | None:intergenic |
| TATGAAGGAGTGTCACAATG+AGG | 0.672349 | 1.1:+54928689 | MS.gene004699:CDS |
| CTGCCCAGCTGCTTTCACCG+CGG | 0.677468 | 1.1:-54925147 | None:intergenic |
| ACAAATTGATATTATGTGTG+AGG | 0.677973 | 1.1:+54924743 | MS.gene004699:CDS |
| GCTCAATAAGACGAGATGCG+TGG | 0.679541 | 1.1:-54946693 | None:intergenic |
| ATGATACCAGACATCCACAA+TGG | 0.689594 | 1.1:+54925569 | MS.gene004699:intron |
| CAATAAGACGAGATGCGTGG+AGG | 0.691429 | 1.1:-54946690 | None:intergenic |
| ATCCGCAGTGAAAACATCCG+AGG | 0.693569 | 1.1:+54924770 | MS.gene004699:CDS |
| AGCCTCGACAATGTAACGTG+TGG | 0.694105 | 1.1:-54928488 | None:intergenic |
| ACCGAGTGGAACCATGCCAG+AGG | 0.699060 | 1.1:+54925352 | MS.gene004699:CDS |
| ACTAGGAAAAGTTTACCGAG+TGG | 0.721933 | 1.1:+54925338 | MS.gene004699:CDS |
| ACTCCAAGGAAAGAATCCGG+AGG | 0.725399 | 1.1:+54924645 | MS.gene004699:CDS |
| ACAGAAGAAGAACAAACACA+AGG | 0.726656 | 1.1:+54943921 | MS.gene004699:CDS |
| TGAACAGGCTACATTCATCG+GGG | 0.761674 | 1.1:+54924511 | MS.gene004699:CDS |
| TAGTTTGAGTGAAAGGACAG+TGG | 0.769020 | 1.1:+54924569 | MS.gene004699:CDS |
| TCTTTGTGAGCAGAAATCCG+CGG | 0.776290 | 1.1:+54925130 | MS.gene004699:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 54924157 | 54946732 | 54924157 | ID=MS.gene004699 |
| chr1.1 | mRNA | 54924157 | 54946732 | 54924157 | ID=MS.gene004699.t1;Parent=MS.gene004699 |
| chr1.1 | exon | 54924157 | 54924260 | 54924157 | ID=MS.gene004699.t1.exon1;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54924157 | 54924260 | 54924157 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54924431 | 54925478 | 54924431 | ID=MS.gene004699.t1.exon2;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54924431 | 54925478 | 54924431 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54925579 | 54925620 | 54925579 | ID=MS.gene004699.t1.exon3;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54925579 | 54925620 | 54925579 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54925790 | 54925953 | 54925790 | ID=MS.gene004699.t1.exon4;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54925790 | 54925953 | 54925790 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54926737 | 54926935 | 54926737 | ID=MS.gene004699.t1.exon5;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54926737 | 54926935 | 54926737 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54927653 | 54927709 | 54927653 | ID=MS.gene004699.t1.exon6;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54927653 | 54927709 | 54927653 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54927809 | 54927914 | 54927809 | ID=MS.gene004699.t1.exon7;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54927809 | 54927914 | 54927809 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54928006 | 54928139 | 54928006 | ID=MS.gene004699.t1.exon8;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54928006 | 54928139 | 54928006 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54928264 | 54928338 | 54928264 | ID=MS.gene004699.t1.exon9;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54928264 | 54928338 | 54928264 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54928463 | 54928588 | 54928463 | ID=MS.gene004699.t1.exon10;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54928463 | 54928588 | 54928463 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54928684 | 54928815 | 54928684 | ID=MS.gene004699.t1.exon11;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54928684 | 54928815 | 54928684 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54928920 | 54929003 | 54928920 | ID=MS.gene004699.t1.exon12;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54928920 | 54929003 | 54928920 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54932449 | 54932562 | 54932449 | ID=MS.gene004699.t1.exon13;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54932449 | 54932562 | 54932449 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54932692 | 54932792 | 54932692 | ID=MS.gene004699.t1.exon14;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54932692 | 54932792 | 54932692 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54934316 | 54934382 | 54934316 | ID=MS.gene004699.t1.exon15;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54934316 | 54934382 | 54934316 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54935570 | 54935620 | 54935570 | ID=MS.gene004699.t1.exon16;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54935570 | 54935620 | 54935570 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54935991 | 54936068 | 54935991 | ID=MS.gene004699.t1.exon17;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54935991 | 54936068 | 54935991 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54937876 | 54938082 | 54937876 | ID=MS.gene004699.t1.exon18;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54937876 | 54938082 | 54937876 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54938183 | 54938221 | 54938183 | ID=MS.gene004699.t1.exon19;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54938183 | 54938221 | 54938183 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54938953 | 54939024 | 54938953 | ID=MS.gene004699.t1.exon20;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54938953 | 54939024 | 54938953 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54939131 | 54939217 | 54939131 | ID=MS.gene004699.t1.exon21;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54939131 | 54939217 | 54939131 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54939288 | 54939344 | 54939288 | ID=MS.gene004699.t1.exon22;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54939288 | 54939344 | 54939288 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54940534 | 54940745 | 54940534 | ID=MS.gene004699.t1.exon23;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54940534 | 54940745 | 54940534 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54940854 | 54940947 | 54940854 | ID=MS.gene004699.t1.exon24;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54940854 | 54940947 | 54940854 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54943892 | 54943942 | 54943892 | ID=MS.gene004699.t1.exon25;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54943892 | 54943942 | 54943892 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54945059 | 54945121 | 54945059 | ID=MS.gene004699.t1.exon26;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54945059 | 54945121 | 54945059 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54945230 | 54945289 | 54945230 | ID=MS.gene004699.t1.exon27;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54945230 | 54945289 | 54945230 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54945928 | 54945990 | 54945928 | ID=MS.gene004699.t1.exon28;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54945928 | 54945990 | 54945928 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| chr1.1 | exon | 54946643 | 54946732 | 54946643 | ID=MS.gene004699.t1.exon29;Parent=MS.gene004699.t1 |
| chr1.1 | CDS | 54946643 | 54946732 | 54946643 | ID=cds.MS.gene004699.t1;Parent=MS.gene004699.t1 |
| Gene Sequence |
| Protein sequence |
