Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036254.t1 | XP_003590707.2 | 94.4 | 1258 | 60 | 1 | 1 | 1247 | 1 | 1258 | 0.00E+00 | 2303.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036254.t1 | D1KF50 | 62.9 | 1009 | 342 | 9 | 256 | 1247 | 154 | 1147 | 0.0e+00 | 1207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036254.t1 | G7I2M0 | 94.4 | 1258 | 60 | 1 | 1 | 1247 | 1 | 1258 | 0.0e+00 | 2303.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036254 | MS.gene063116 | PPI |
| MS.gene79893 | MS.gene036254 | PPI |
| MS.gene01518 | MS.gene036254 | PPI |
| MS.gene008730 | MS.gene036254 | PPI |
| MS.gene036254 | MS.gene014230 | PPI |
| MS.gene036254 | MS.gene68766 | PPI |
| MS.gene036254 | MS.gene52223 | PPI |
| MS.gene036254 | MS.gene023855 | PPI |
| MS.gene036254 | MS.gene047400 | PPI |
| MS.gene036254 | MS.gene47513 | PPI |
| MS.gene004214 | MS.gene036254 | PPI |
| MS.gene036254 | MS.gene39588 | PPI |
| MS.gene036254 | MS.gene26565 | PPI |
| MS.gene68170 | MS.gene036254 | PPI |
| MS.gene036254 | MS.gene77531 | PPI |
| MS.gene27709 | MS.gene036254 | PPI |
| MS.gene058013 | MS.gene036254 | PPI |
| MS.gene036254 | MS.gene75670 | PPI |
| MS.gene063118 | MS.gene036254 | PPI |
| MS.gene036254 | MS.gene045358 | PPI |
| MS.gene036254 | MS.gene002540 | PPI |
| MS.gene003428 | MS.gene036254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036254.t1 | MTR_1g072800 | 95.310 | 1258 | 48 | 1 | 1 | 1247 | 1 | 1258 | 0.0 | 2422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036254.t1 | AT4G25120 | 62.934 | 1009 | 342 | 9 | 256 | 1247 | 154 | 1147 | 0.0 | 1271 |
Find 254 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATTGCAAGAATGTTTA+AGG | 0.138597 | 1.3:-52437550 | None:intergenic |
| TAGCCCATTTATGGAATATA+TGG | 0.165449 | 1.3:-52452734 | None:intergenic |
| CCCTCTTACCTCAATGAATT+TGG | 0.168329 | 1.3:-52449798 | None:intergenic |
| CCTTATCCTTGAACTGTTTA+GGG | 0.171079 | 1.3:-52438634 | None:intergenic |
| TCATCATCTTCTAGAATTTC+AGG | 0.199433 | 1.3:+52451201 | MS.gene036254:CDS |
| CATAATAAAATAACAATTAT+TGG | 0.220639 | 1.3:+52439854 | MS.gene036254:CDS |
| TTTCCCATATATTCCATAAA+TGG | 0.222202 | 1.3:+52452730 | MS.gene036254:CDS |
| AAAATGCAAAACCAGGAAAA+TGG | 0.229412 | 1.3:+52435904 | None:intergenic |
| ATCTTTAGTGCAAAGATTTC+TGG | 0.234316 | 1.3:+52444506 | MS.gene036254:CDS |
| TTCAATGGAGCTGACATTTC+CGG | 0.242122 | 1.3:+52440026 | MS.gene036254:CDS |
| ACTATCAATTTGTTCCAAAA+TGG | 0.247150 | 1.3:-52436667 | None:intergenic |
| TGATTGTTGAGCAAATTATT+TGG | 0.254965 | 1.3:-52452504 | None:intergenic |
| GTTCTTACTGATAACTCTTC+TGG | 0.270679 | 1.3:+52440309 | MS.gene036254:CDS |
| GCCTTATCCTTGAACTGTTT+AGG | 0.277204 | 1.3:-52438635 | None:intergenic |
| AGCTCCATTGAAACTGAAAA+TGG | 0.285422 | 1.3:-52440015 | None:intergenic |
| AGAGAGACCTCTTTGTAGTT+TGG | 0.306978 | 1.3:-52440074 | None:intergenic |
| AGATTTCTGGTACTTATAAA+AGG | 0.310724 | 1.3:+52444519 | MS.gene036254:CDS |
| ATTAATGTTTCTAAAGATAT+AGG | 0.315310 | 1.3:+52436624 | MS.gene036254:CDS |
| GTTTGTTCTTCTTCTGTCTT+AGG | 0.318206 | 1.3:-52454366 | None:intergenic |
| AATCCTCCGGATTCTTTCCT+TGG | 0.318685 | 1.3:-52436399 | None:intergenic |
| GGACCAGCTACAATCATTAA+AGG | 0.319770 | 1.3:-52437194 | None:intergenic |
| TGTCGTTGGAAATGTGGATA+TGG | 0.323447 | 1.3:+52436593 | MS.gene036254:CDS |
| TACCTGTTGTACCACTGATT+TGG | 0.326941 | 1.3:+52452473 | MS.gene036254:CDS |
| ACCAAATTCATTGAGGTAAG+AGG | 0.327399 | 1.3:+52449797 | MS.gene036254:CDS |
| CCATGCAATACAAGCTTCTA+AGG | 0.330736 | 1.3:+52439819 | MS.gene036254:CDS |
| TCAGAGAAAGTCAGGATTCA+TGG | 0.333949 | 1.3:+52439759 | MS.gene036254:CDS |
| AGAAGTTCTTCCTGAGGCTT+TGG | 0.336152 | 1.3:-52439404 | None:intergenic |
| CATTCTCAATCTTTAACTTC+AGG | 0.336578 | 1.3:-52461397 | None:intergenic |
| ACCTTATCTAGCAACCTCTT+TGG | 0.342277 | 1.3:-52452777 | None:intergenic |
| AAGAAAACCTTTCCACTTCC+CGG | 0.344425 | 1.3:-52437215 | None:intergenic |
| GCACCCAAGTTTCTTCAAAT+AGG | 0.347138 | 1.3:-52462124 | None:intergenic |
| TTGTACCGTTGATATGAGTT+TGG | 0.348775 | 1.3:+52436971 | MS.gene036254:CDS |
| CGTGAAATGGGCAATCAAAT+AGG | 0.354828 | 1.3:+52439436 | MS.gene036254:CDS |
| ACTCAGAGACATCATCTAAT+AGG | 0.355295 | 1.3:-52449766 | None:intergenic |
| TTGTGTAGGGTGATATAAAT+AGG | 0.357107 | 1.3:+52452409 | MS.gene036254:intron |
| ACATCTGAATTCTTAATATA+TGG | 0.357459 | 1.3:+52438497 | MS.gene036254:CDS |
| ATTAAAATCTTGTAATGCTC+TGG | 0.365675 | 1.3:+52439588 | MS.gene036254:CDS |
| ACTGGTGACATGCTTTGTTT+TGG | 0.369252 | 1.3:+52437023 | MS.gene036254:CDS |
| CGGGCAATTGTTGATGTTGA+TGG | 0.371200 | 1.3:+52447890 | MS.gene036254:CDS |
| CTCATATAGTCGAGTCTTCA+AGG | 0.372676 | 1.3:+52444253 | MS.gene036254:CDS |
| ATGTCATGATGGACTCAAAT+TGG | 0.374073 | 1.3:+52451070 | MS.gene036254:CDS |
| ATGCGTGGAGGCGGGATGTA+GGG | 0.375669 | 1.3:-52462155 | None:intergenic |
| ATAATAATGTACCTCAACTA+TGG | 0.377602 | 1.3:-52450892 | None:intergenic |
| TTCTGCAGAATATCGTGAAA+TGG | 0.382371 | 1.3:+52439423 | MS.gene036254:CDS |
| ATTGCATGGCACTAGTATCT+TGG | 0.383850 | 1.3:-52439805 | None:intergenic |
| TTCCCATATATTCCATAAAT+GGG | 0.395687 | 1.3:+52452731 | MS.gene036254:CDS |
| TAGTAACGTTGACATGGGTT+TGG | 0.399138 | 1.3:+52436779 | MS.gene036254:CDS |
| ATCTCCTATTTGAAGAAACT+TGG | 0.400100 | 1.3:+52462120 | MS.gene036254:CDS |
| TTGCAGAGGTTCCGTTGAAC+AGG | 0.400611 | 1.3:+52436247 | MS.gene036254:CDS |
| GTCATTGCAAGAATGTTTAA+GGG | 0.400801 | 1.3:-52437549 | None:intergenic |
| AGTAACGTTGACATGGGTTT+GGG | 0.403012 | 1.3:+52436780 | MS.gene036254:CDS |
| AAAGACCCCTAAACAGTTCA+AGG | 0.407264 | 1.3:+52438628 | MS.gene036254:CDS |
| TCGTCATTTCCTATATCCTT+AGG | 0.407997 | 1.3:-52436816 | None:intergenic |
| TTTAATGATTGTAGCTGGTC+CGG | 0.408518 | 1.3:+52437196 | MS.gene036254:CDS |
| GACCAGCTACAATCATTAAA+GGG | 0.409352 | 1.3:-52437193 | None:intergenic |
| CGCGGTGAAAGCAGCTGGGC+AGG | 0.409532 | 1.3:+52436899 | MS.gene036254:CDS |
| TGCCGTTTGCTTCCCAGCTA+TGG | 0.414873 | 1.3:-52437616 | None:intergenic |
| TGTACCGTTGATATGAGTTT+GGG | 0.415331 | 1.3:+52436972 | MS.gene036254:CDS |
| AAACGTATTGGAGCCATAGC+TGG | 0.416341 | 1.3:+52437603 | MS.gene036254:CDS |
| AAATCCGCGGTGAAAGCAGC+TGG | 0.418520 | 1.3:+52436894 | MS.gene036254:CDS |
| ATAAACGTGCTCATCTTATG+AGG | 0.419539 | 1.3:+52460717 | MS.gene036254:CDS |
| AATTATTGGTGACGATGATC+AGG | 0.421373 | 1.3:+52439868 | MS.gene036254:CDS |
| GGACATTGTCTTCATAGTTA+AGG | 0.424282 | 1.3:+52450079 | MS.gene036254:CDS |
| TGCAAATTCTGCAAGCTCAC+TGG | 0.424638 | 1.3:-52452541 | None:intergenic |
| TCCTATCCCGAAAAGCCATT+TGG | 0.425119 | 1.3:-52440686 | None:intergenic |
| GTCCAAATCAGTGGTACAAC+AGG | 0.428287 | 1.3:-52452475 | None:intergenic |
| CATTGAGGTAAGAGGGGAAA+AGG | 0.429872 | 1.3:+52449805 | MS.gene036254:CDS |
| ACCCCTTTAATGATTGTAGC+TGG | 0.429977 | 1.3:+52437191 | MS.gene036254:CDS |
| TGCTTCATCACAGCTTAAGC+TGG | 0.430695 | 1.3:-52460540 | None:intergenic |
| GAAATACATTCTTGAGCAAC+GGG | 0.432043 | 1.3:+52447871 | MS.gene036254:intron |
| ACATCCGAGGTGGAGGGGTT+AGG | 0.432940 | 1.3:+52436534 | MS.gene036254:CDS |
| AAGGAAATGTCAGAAGATAA+AGG | 0.433329 | 1.3:+52449824 | MS.gene036254:CDS |
| TCCACGGATTTCTGCTCAAA+GGG | 0.435634 | 1.3:-52436690 | None:intergenic |
| AGCCCATTTATGGAATATAT+GGG | 0.435807 | 1.3:-52452733 | None:intergenic |
| TCGTTAAAACCTTCCTTCCA+TGG | 0.439801 | 1.3:-52446174 | None:intergenic |
| ATTGTAGCTGGTCCGGGAAG+TGG | 0.442729 | 1.3:+52437203 | MS.gene036254:CDS |
| CCCTAAACAGTTCAAGGATA+AGG | 0.444144 | 1.3:+52438634 | MS.gene036254:CDS |
| AAGGGTTTATGCGACGTTGA+TGG | 0.446582 | 1.3:+52436186 | MS.gene036254:CDS |
| TTCACTGTAGTTTGAGTGAA+AGG | 0.459853 | 1.3:+52436313 | MS.gene036254:CDS |
| CCATTTCAGGCCAAAGCCTC+AGG | 0.460475 | 1.3:+52439394 | MS.gene036254:intron |
| CACCCCAGCTTCTTTCTCCA+CGG | 0.461142 | 1.3:-52436706 | None:intergenic |
| TTGAGCAAATTATTTGGCAC+AGG | 0.462449 | 1.3:-52452498 | None:intergenic |
| TTAAAGATTGAGAATGCAAT+GGG | 0.465257 | 1.3:+52461404 | MS.gene036254:CDS |
| AAATGCAAAACCAGGAAAAT+GGG | 0.465715 | 1.3:+52435905 | None:intergenic |
| GATGCGTGGAGGCGGGATGT+AGG | 0.469088 | 1.3:-52462156 | None:intergenic |
| TCTGCAGAATATCGTGAAAT+GGG | 0.469910 | 1.3:+52439424 | MS.gene036254:CDS |
| CCTTTGAAATCGTGTAATAG+AGG | 0.470147 | 1.3:-52450849 | None:intergenic |
| TGGTGAAGAGATGGATGAAT+CGG | 0.470569 | 1.3:-52435983 | None:intergenic |
| TTGAACAGGCTACATTCATC+GGG | 0.470832 | 1.3:+52436261 | MS.gene036254:CDS |
| TTGAGGAAGGAGTGGCTTTG+AGG | 0.473850 | 1.3:-52435950 | None:intergenic |
| TCATTTGTCCTGTAGGCAAA+AGG | 0.475606 | 1.3:+52450047 | MS.gene036254:intron |
| AGTGCTGTTTCTGAGGGTAT+AGG | 0.477579 | 1.3:+52436999 | MS.gene036254:CDS |
| CATGATGGACTCAAATTGGC+AGG | 0.482295 | 1.3:+52451074 | MS.gene036254:CDS |
| GAAACTCCAAGGAAAGAATC+CGG | 0.483978 | 1.3:+52436393 | MS.gene036254:CDS |
| ATTACGAAAGGAAATAAATC+CGG | 0.484333 | 1.3:-52440045 | None:intergenic |
| TTAATGATTGTAGCTGGTCC+GGG | 0.484823 | 1.3:+52437197 | MS.gene036254:CDS |
| CGTTAAAACCTTCCTTCCAT+GGG | 0.486757 | 1.3:-52446173 | None:intergenic |
| GAGGCGGGATGTAGGGGTCA+TGG | 0.489449 | 1.3:-52462148 | None:intergenic |
| GGGAACCAGTGCTGTTTCTG+AGG | 0.489910 | 1.3:+52436992 | MS.gene036254:CDS |
| TCAGCAGATAACTGTTCCTA+TGG | 0.489914 | 1.3:+52440515 | MS.gene036254:CDS |
| AGATGAGCACGTTTATCAGC+AGG | 0.489996 | 1.3:-52460710 | None:intergenic |
| CCAAATTCATTGAGGTAAGA+GGG | 0.490121 | 1.3:+52449798 | MS.gene036254:CDS |
| GTTGAACAGGCTACATTCAT+CGG | 0.491263 | 1.3:+52436260 | MS.gene036254:CDS |
| TGATTCAGATTCAAATCCTC+CGG | 0.494256 | 1.3:-52436412 | None:intergenic |
| ATTCTTCAACTGACATCGCT+TGG | 0.495343 | 1.3:-52440286 | None:intergenic |
| CAACCTCTTTGGATCTTGAA+AGG | 0.496114 | 1.3:-52452766 | None:intergenic |
| TCCAAAGAGGTTGCTAGATA+AGG | 0.497008 | 1.3:+52452776 | MS.gene036254:CDS |
| AAAATACCGTTTAACATTCA+CGG | 0.498668 | 1.3:+52440708 | MS.gene036254:CDS |
| TCTGCAAGAGGAACTCTCTT+CGG | 0.500691 | 1.3:-52436231 | None:intergenic |
| GGAACCAGTGCTGTTTCTGA+GGG | 0.501826 | 1.3:+52436993 | MS.gene036254:CDS |
| ACTAACTACACCGCTCTCGC+TGG | 0.503544 | 1.3:-52436760 | None:intergenic |
| TCAAGGATAAGGCAAAGAAA+TGG | 0.503978 | 1.3:+52438645 | MS.gene036254:CDS |
| GACACTGACTACCATTCATC+AGG | 0.504509 | 1.3:+52449940 | MS.gene036254:CDS |
| ACGTTGATGGTGCCAAGGGT+AGG | 0.504831 | 1.3:+52436199 | MS.gene036254:CDS |
| TCGAGCGAGGGCAGTGTCGT+TGG | 0.505389 | 1.3:+52436579 | MS.gene036254:CDS |
| GGGGTTAGGTCATAGTTGTC+AGG | 0.505448 | 1.3:+52436548 | MS.gene036254:CDS |
| GGAAATGTGGATATGGGATC+GGG | 0.505632 | 1.3:+52436600 | MS.gene036254:CDS |
| TAAGACGAGATGCGTGGAGG+CGG | 0.505673 | 1.3:-52462164 | None:intergenic |
| TCCTGCTGTTACTGCGGCGA+AGG | 0.505967 | 1.3:+52436347 | MS.gene036254:CDS |
| ACGGCAATGATTTCATAAGA+AGG | 0.508310 | 1.3:+52452574 | MS.gene036254:CDS |
| ACCAGACATCCACAATGGTT+GGG | 0.508385 | 1.3:+52437325 | MS.gene036254:intron |
| AGTGAAAACATCCGAGGTGG+AGG | 0.509567 | 1.3:+52436527 | MS.gene036254:CDS |
| AAGACGAGATGCGTGGAGGC+GGG | 0.509628 | 1.3:-52462163 | None:intergenic |
| CTCCACGGATTTCTGCTCAA+AGG | 0.510959 | 1.3:-52436691 | None:intergenic |
| GCCACGCCGTGAATGTTAAA+CGG | 0.512239 | 1.3:-52440714 | None:intergenic |
| AAGTATTTAGAATATTCCTC+TGG | 0.513130 | 1.3:-52437119 | None:intergenic |
| ATGTGGATAGCGAGACTACT+AGG | 0.515917 | 1.3:+52437072 | MS.gene036254:CDS |
| AAATCCGTGGAGAAAGAAGC+TGG | 0.516342 | 1.3:+52436702 | MS.gene036254:CDS |
| TCATATCAAAACTTGTTCAC+AGG | 0.521101 | 1.3:+52446206 | MS.gene036254:CDS |
| GTTTCTGAGGGTATAGGAAC+TGG | 0.523455 | 1.3:+52437005 | MS.gene036254:CDS |
| AGCAACACCAACTGACAAGC+AGG | 0.524799 | 1.3:+52461430 | MS.gene036254:CDS |
| GTTAAAGATTGAGAATGCAA+TGG | 0.526126 | 1.3:+52461403 | MS.gene036254:CDS |
| TAACCTGCAGATAATTATGA+AGG | 0.528096 | 1.3:+52440424 | MS.gene036254:intron |
| TGGAAATGTGGATATGGGAT+CGG | 0.528301 | 1.3:+52436599 | MS.gene036254:CDS |
| ATGCTTCAAACAGCACTGCC+TGG | 0.528925 | 1.3:+52444218 | MS.gene036254:CDS |
| CGTTGATGGTGCCAAGGGTA+GGG | 0.529273 | 1.3:+52436200 | MS.gene036254:CDS |
| CGTGGAGAAAGAAGCTGGGG+TGG | 0.529946 | 1.3:+52436707 | MS.gene036254:CDS |
| AAAGCGAGAAGGCCATCAAA+AGG | 0.530917 | 1.3:+52452446 | MS.gene036254:CDS |
| ATTCTTACCTGCTTGTCAGT+TGG | 0.530991 | 1.3:-52461437 | None:intergenic |
| GGGGATAGATCATAGCTGTC+AGG | 0.532802 | 1.3:+52436728 | MS.gene036254:CDS |
| TTTATCTACCAAATTCATTG+AGG | 0.533033 | 1.3:+52449790 | MS.gene036254:CDS |
| TGCGTGGAGGCGGGATGTAG+GGG | 0.533503 | 1.3:-52462154 | None:intergenic |
| GCTGAAATGAGAAAACGTAT+TGG | 0.534321 | 1.3:+52437591 | MS.gene036254:CDS |
| TGCAATTCTCTACCGTAGGC+GGG | 0.534781 | 1.3:+52440544 | MS.gene036254:CDS |
| GTGGAGAAAGAAGCTGGGGT+GGG | 0.534922 | 1.3:+52436708 | MS.gene036254:CDS |
| TCCTTCGCCGCAGTAACAGC+AGG | 0.536233 | 1.3:-52436348 | None:intergenic |
| TACCAGACATCCACAATGGT+TGG | 0.537238 | 1.3:+52437324 | MS.gene036254:intron |
| CGGGATAGTTACCTGATGAA+TGG | 0.538107 | 1.3:-52449951 | None:intergenic |
| GGCTTTACTTCCTTTCGAGA+AGG | 0.538440 | 1.3:+52444274 | MS.gene036254:CDS |
| CCTTAGAAGCTTGTATTGCA+TGG | 0.544871 | 1.3:-52439819 | None:intergenic |
| CGATCTTACCCATGGAAGGA+AGG | 0.545407 | 1.3:+52446165 | MS.gene036254:CDS |
| AGAAATACATTCTTGAGCAA+CGG | 0.545983 | 1.3:+52447870 | MS.gene036254:intron |
| TGAAATTCTAGAAGATGATG+AGG | 0.547891 | 1.3:-52451199 | None:intergenic |
| CTTATCCTTGAACTGTTTAG+GGG | 0.548754 | 1.3:-52438633 | None:intergenic |
| GGAAAGAGAAGTTACTGGTA+TGG | 0.549677 | 1.3:-52436003 | None:intergenic |
| TCTCCTATTTGAAGAAACTT+GGG | 0.551625 | 1.3:+52462121 | MS.gene036254:CDS |
| TTTAGAATATTCCTCTGGCA+TGG | 0.553981 | 1.3:-52437114 | None:intergenic |
| AGGCTACATTCATCGGGGAA+TGG | 0.556340 | 1.3:+52436267 | MS.gene036254:CDS |
| AACGTATTGGAGCCATAGCT+GGG | 0.558250 | 1.3:+52437604 | MS.gene036254:CDS |
| AAGCCTTTCAAGATCCAAAG+AGG | 0.559938 | 1.3:+52452763 | MS.gene036254:CDS |
| ATCAGGGAAAGCCTTCCAAA+TGG | 0.561106 | 1.3:+52440671 | MS.gene036254:CDS |
| TTTAGGGGTCTTTAGACCAT+CGG | 0.561700 | 1.3:-52438618 | None:intergenic |
| TGGAGAAAGAAGCTGGGGTG+GGG | 0.563657 | 1.3:+52436709 | MS.gene036254:CDS |
| TGTAGTTAGTAACGTTGACA+TGG | 0.563921 | 1.3:+52436773 | MS.gene036254:CDS |
| GGGCAGTGTCGTTGGAAATG+TGG | 0.564061 | 1.3:+52436587 | MS.gene036254:CDS |
| ATGCGACGTTGATGGTGCCA+AGG | 0.564526 | 1.3:+52436194 | MS.gene036254:CDS |
| AGCTGGTCCGGGAAGTGGAA+AGG | 0.565779 | 1.3:+52437208 | MS.gene036254:CDS |
| ACTTGAAATCACTAAATGAA+AGG | 0.565834 | 1.3:+52437138 | MS.gene036254:CDS |
| CAGGAGAGAGTCTCGAGCGA+GGG | 0.566241 | 1.3:+52436567 | MS.gene036254:CDS |
| TTACTGGTATGGTGAAGAGA+TGG | 0.569422 | 1.3:-52435992 | None:intergenic |
| GAGAGAGTTTCCAGCGAGAG+CGG | 0.571871 | 1.3:+52436750 | MS.gene036254:CDS |
| CCTCTATTACACGATTTCAA+AGG | 0.573941 | 1.3:+52450849 | MS.gene036254:CDS |
| AGCCATAGCTGGGAAGCAAA+CGG | 0.574908 | 1.3:+52437614 | MS.gene036254:CDS |
| TTGCAATTCTCTACCGTAGG+CGG | 0.575068 | 1.3:+52440543 | MS.gene036254:CDS |
| GTTTGGAAAATCATTACGAA+AGG | 0.576451 | 1.3:-52440057 | None:intergenic |
| GAGAATTGCAATGTTGCCAT+AGG | 0.576740 | 1.3:-52440531 | None:intergenic |
| TTCTGCAGAAGTTCTTCCTG+AGG | 0.577530 | 1.3:-52439410 | None:intergenic |
| GTGAAAACATCCGAGGTGGA+GGG | 0.578309 | 1.3:+52436528 | MS.gene036254:CDS |
| TGATAACTCTTCTGGATCCA+AGG | 0.579242 | 1.3:+52440317 | MS.gene036254:CDS |
| CGGAACTCGAACCCTACCCT+TGG | 0.582753 | 1.3:-52436211 | None:intergenic |
| ATGTTGCAATGACTCGTGCT+CGG | 0.583624 | 1.3:+52451028 | MS.gene036254:CDS |
| TGCGACGTTGATGGTGCCAA+GGG | 0.587453 | 1.3:+52436195 | MS.gene036254:CDS |
| CATATCAAAACTTGTTCACA+GGG | 0.588123 | 1.3:+52446207 | MS.gene036254:CDS |
| GGCTGTTCCTGCTGTTACTG+CGG | 0.589590 | 1.3:+52436341 | MS.gene036254:CDS |
| TCCTCTGGCATGGTTCCACT+CGG | 0.589774 | 1.3:-52437104 | None:intergenic |
| TGAAAACATCCGAGGTGGAG+GGG | 0.589910 | 1.3:+52436529 | MS.gene036254:CDS |
| GTCGTTGGAAATGTGGATAT+GGG | 0.589941 | 1.3:+52436594 | MS.gene036254:CDS |
| GATGAGCACGTTTATCAGCA+GGG | 0.593743 | 1.3:-52460709 | None:intergenic |
| AATCCGTGGAGAAAGAAGCT+GGG | 0.595918 | 1.3:+52436703 | MS.gene036254:CDS |
| GAAGAGAGTTCCTCTTGCAG+AGG | 0.596350 | 1.3:+52436233 | MS.gene036254:CDS |
| CAAAACTCGCCCAACCATTG+TGG | 0.596725 | 1.3:-52437334 | None:intergenic |
| ACAGCGGAATGCAATTATTG+AGG | 0.596962 | 1.3:+52438529 | MS.gene036254:CDS |
| GATGAATGTAGCCTGTTCAA+CGG | 0.598121 | 1.3:-52436258 | None:intergenic |
| ATCCCGAAAAGCCATTTGGA+AGG | 0.598953 | 1.3:-52440682 | None:intergenic |
| GAAGAGATGGATGAATCGGA+AGG | 0.600187 | 1.3:-52435979 | None:intergenic |
| CGATTTCAAAGGTGTTGTGA+AGG | 0.602419 | 1.3:+52450860 | MS.gene036254:CDS |
| TGTAGGCAAAAGGTTTAGAG+TGG | 0.605902 | 1.3:+52450057 | MS.gene036254:intron |
| TTCAACGGAACCTCTGCAAG+AGG | 0.607424 | 1.3:-52436243 | None:intergenic |
| GAGAATGTTTCAAGCGAGAG+CGG | 0.608079 | 1.3:+52436942 | MS.gene036254:CDS |
| TTGATTGGAGAAGCGTCCGA+TGG | 0.609042 | 1.3:+52438602 | MS.gene036254:CDS |
| CATTAAAGGGGTAGAAACAT+CGG | 0.609117 | 1.3:-52437180 | None:intergenic |
| CGCAGTGAAAACATCCGAGG+TGG | 0.611066 | 1.3:+52436524 | MS.gene036254:CDS |
| CTTTGAAATCGTGTAATAGA+GGG | 0.611912 | 1.3:-52450848 | None:intergenic |
| TGAGCAAATTATTTGGCACA+GGG | 0.615285 | 1.3:-52452497 | None:intergenic |
| TCAGGAGAGAGTCTCGAGCG+AGG | 0.615530 | 1.3:+52436566 | MS.gene036254:CDS |
| TAAACGTGCTCATCTTATGA+GGG | 0.616051 | 1.3:+52460718 | MS.gene036254:CDS |
| CAAATTCATTGAGGTAAGAG+GGG | 0.620448 | 1.3:+52449799 | MS.gene036254:CDS |
| AATCCGCGGTGAAAGCAGCT+GGG | 0.620694 | 1.3:+52436895 | MS.gene036254:CDS |
| GGAGCGATCTTACCCATGGA+AGG | 0.621578 | 1.3:+52446161 | MS.gene036254:intron |
| TGGCACAGGGTCCAAATCAG+TGG | 0.622015 | 1.3:-52452484 | None:intergenic |
| AATTCTTAATATATGGTCAG+TGG | 0.622709 | 1.3:+52438504 | MS.gene036254:CDS |
| TATGAGTCATCGTCACAACC+AGG | 0.624960 | 1.3:-52444236 | None:intergenic |
| GTAGTTAGTAACGTTGACAT+GGG | 0.625581 | 1.3:+52436774 | MS.gene036254:CDS |
| GAACTACAAATAAAGCGAGA+AGG | 0.625987 | 1.3:+52452435 | MS.gene036254:CDS |
| CATAGGAGCGATCTTACCCA+TGG | 0.630306 | 1.3:+52446157 | MS.gene036254:intron |
| CAATTGTTGATGTTGATGGA+GGG | 0.630795 | 1.3:+52447894 | MS.gene036254:CDS |
| GCAATTGTTGATGTTGATGG+AGG | 0.638860 | 1.3:+52447893 | MS.gene036254:CDS |
| GAAATTCTAGAAGATGATGA+GGG | 0.640072 | 1.3:-52451198 | None:intergenic |
| ACCGTTTAACATTCACGGCG+TGG | 0.640575 | 1.3:+52440713 | MS.gene036254:CDS |
| TATACCCTCAGAAACAGCAC+TGG | 0.644074 | 1.3:-52436997 | None:intergenic |
| CAAGAAACATCACCCGCCTA+CGG | 0.646039 | 1.3:-52440556 | None:intergenic |
| GGACACTGCAGCCATAGTTG+AGG | 0.646812 | 1.3:+52450881 | MS.gene036254:CDS |
| ATTTCTTTCAGAAATCGTGA+AGG | 0.648622 | 1.3:-52451175 | None:intergenic |
| TATATGGTCAGTGGCAACAG+CGG | 0.650024 | 1.3:+52438513 | MS.gene036254:CDS |
| ATGACCTAACCCCTCCACCT+CGG | 0.650766 | 1.3:-52436538 | None:intergenic |
| AAGAGATGGATGAATCGGAA+GGG | 0.652168 | 1.3:-52435978 | None:intergenic |
| ACCAGCTACAATCATTAAAG+GGG | 0.653481 | 1.3:-52437192 | None:intergenic |
| TCCCTTTGAGCAGAAATCCG+TGG | 0.653752 | 1.3:+52436689 | MS.gene036254:CDS |
| GGATCATAAAGAAGAACATG+TGG | 0.655055 | 1.3:+52437055 | MS.gene036254:CDS |
| CTACATTCATCGGGGAATGG+CGG | 0.655332 | 1.3:+52436270 | MS.gene036254:CDS |
| CTCCACACGTTACATTGTCG+AGG | 0.655441 | 1.3:+52440236 | MS.gene036254:CDS |
| GAATTTGCAGAGGCAAACAA+CGG | 0.656034 | 1.3:+52452555 | MS.gene036254:CDS |
| CTGCCCAGCTGCTTTCACCG+CGG | 0.658878 | 1.3:-52436898 | None:intergenic |
| GACACAGAAAATGCAAAACC+AGG | 0.659017 | 1.3:+52435897 | None:intergenic |
| TGAGCTTGCAGAATTTGCAG+AGG | 0.660838 | 1.3:+52452545 | MS.gene036254:CDS |
| ATCCGTGGAGAAAGAAGCTG+GGG | 0.663190 | 1.3:+52436704 | MS.gene036254:CDS |
| GTAGGCAAAAGGTTTAGAGT+GGG | 0.663253 | 1.3:+52450058 | MS.gene036254:intron |
| TGTAGCGAACATGATACCTG+AGG | 0.664760 | 1.3:+52447480 | MS.gene036254:CDS |
| ACATTGCAATTCTCTACCGT+AGG | 0.665868 | 1.3:+52440540 | MS.gene036254:CDS |
| GGTTCCCAAACTCATATCAA+CGG | 0.666164 | 1.3:-52436976 | None:intergenic |
| TATGAAGGAGTGTCACAATG+AGG | 0.672349 | 1.3:+52440439 | MS.gene036254:CDS |
| ACAAATTGATATTATGTGTG+AGG | 0.677973 | 1.3:+52436494 | MS.gene036254:CDS |
| GCTCAATAAGACGAGATGCG+TGG | 0.679541 | 1.3:-52462170 | None:intergenic |
| ATGATACCAGACATCCACAA+TGG | 0.689594 | 1.3:+52437320 | MS.gene036254:intron |
| CAATAAGACGAGATGCGTGG+AGG | 0.691429 | 1.3:-52462167 | None:intergenic |
| ATCCGCAGTGAAAACATCCG+AGG | 0.693569 | 1.3:+52436521 | MS.gene036254:CDS |
| AGCCTCGACAATGTAACGTG+TGG | 0.694105 | 1.3:-52440238 | None:intergenic |
| ACCGAGTGGAACCATGCCAG+AGG | 0.699060 | 1.3:+52437103 | MS.gene036254:CDS |
| ACTAGGAAAAGTTTACCGAG+TGG | 0.721933 | 1.3:+52437089 | MS.gene036254:CDS |
| ACTCCAAGGAAAGAATCCGG+AGG | 0.725399 | 1.3:+52436396 | MS.gene036254:CDS |
| ACAGAAGAAGAACAAACACA+AGG | 0.726656 | 1.3:+52454372 | MS.gene036254:CDS |
| TGAACAGGCTACATTCATCG+GGG | 0.761674 | 1.3:+52436262 | MS.gene036254:CDS |
| TAGTTTGAGTGAAAGGACAG+TGG | 0.769020 | 1.3:+52436320 | MS.gene036254:CDS |
| TCTTTGTGAGCAGAAATCCG+CGG | 0.776290 | 1.3:+52436881 | MS.gene036254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52435907 | 52462209 | 52435907 | ID=MS.gene036254 |
| chr1.3 | mRNA | 52435907 | 52462209 | 52435907 | ID=MS.gene036254.t1;Parent=MS.gene036254 |
| chr1.3 | exon | 52435907 | 52436010 | 52435907 | ID=MS.gene036254.t1.exon1;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52435907 | 52436010 | 52435907 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52436182 | 52437229 | 52436182 | ID=MS.gene036254.t1.exon2;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52436182 | 52437229 | 52436182 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52437330 | 52437371 | 52437330 | ID=MS.gene036254.t1.exon3;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52437330 | 52437371 | 52437330 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52437540 | 52437703 | 52437540 | ID=MS.gene036254.t1.exon4;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52437540 | 52437703 | 52437540 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52438487 | 52438685 | 52438487 | ID=MS.gene036254.t1.exon5;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52438487 | 52438685 | 52438487 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52439403 | 52439459 | 52439403 | ID=MS.gene036254.t1.exon6;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52439403 | 52439459 | 52439403 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52439559 | 52439664 | 52439559 | ID=MS.gene036254.t1.exon7;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52439559 | 52439664 | 52439559 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52439756 | 52439889 | 52439756 | ID=MS.gene036254.t1.exon8;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52439756 | 52439889 | 52439756 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52440014 | 52440088 | 52440014 | ID=MS.gene036254.t1.exon9;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52440014 | 52440088 | 52440014 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52440213 | 52440338 | 52440213 | ID=MS.gene036254.t1.exon10;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52440213 | 52440338 | 52440213 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52440434 | 52440565 | 52440434 | ID=MS.gene036254.t1.exon11;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52440434 | 52440565 | 52440434 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52440669 | 52440752 | 52440669 | ID=MS.gene036254.t1.exon12;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52440669 | 52440752 | 52440669 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52444197 | 52444310 | 52444197 | ID=MS.gene036254.t1.exon13;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52444197 | 52444310 | 52444197 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52444440 | 52444540 | 52444440 | ID=MS.gene036254.t1.exon14;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52444440 | 52444540 | 52444440 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52446162 | 52446228 | 52446162 | ID=MS.gene036254.t1.exon15;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52446162 | 52446228 | 52446162 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52447451 | 52447501 | 52447451 | ID=MS.gene036254.t1.exon16;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52447451 | 52447501 | 52447451 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52447872 | 52447949 | 52447872 | ID=MS.gene036254.t1.exon17;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52447872 | 52447949 | 52447872 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52449755 | 52449961 | 52449755 | ID=MS.gene036254.t1.exon18;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52449755 | 52449961 | 52449755 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52450062 | 52450100 | 52450062 | ID=MS.gene036254.t1.exon19;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52450062 | 52450100 | 52450062 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52450831 | 52450902 | 52450831 | ID=MS.gene036254.t1.exon20;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52450831 | 52450902 | 52450831 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52451009 | 52451095 | 52451009 | ID=MS.gene036254.t1.exon21;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52451009 | 52451095 | 52451009 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52451166 | 52451222 | 52451166 | ID=MS.gene036254.t1.exon22;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52451166 | 52451222 | 52451166 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52452417 | 52452595 | 52452417 | ID=MS.gene036254.t1.exon23;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52452417 | 52452595 | 52452417 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52452704 | 52452797 | 52452704 | ID=MS.gene036254.t1.exon24;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52452704 | 52452797 | 52452704 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52454343 | 52454393 | 52454343 | ID=MS.gene036254.t1.exon25;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52454343 | 52454393 | 52454343 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52460518 | 52460580 | 52460518 | ID=MS.gene036254.t1.exon26;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52460518 | 52460580 | 52460518 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52460689 | 52460748 | 52460689 | ID=MS.gene036254.t1.exon27;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52460689 | 52460748 | 52460689 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52461389 | 52461451 | 52461389 | ID=MS.gene036254.t1.exon28;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52461389 | 52461451 | 52461389 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| chr1.3 | exon | 52462120 | 52462209 | 52462120 | ID=MS.gene036254.t1.exon29;Parent=MS.gene036254.t1 |
| chr1.3 | CDS | 52462120 | 52462209 | 52462120 | ID=cds.MS.gene036254.t1;Parent=MS.gene036254.t1 |
| Gene Sequence |
| Protein sequence |
