AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014381

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014381.t1 MTR_3g114780 99.167 360 3 0 1 360 1 360 0.0 744
MS.gene014381.t1 MTR_3g032530 41.369 336 179 4 39 359 8 340 1.57e-87 268
MS.gene014381.t1 MTR_3g032530 43.144 299 154 3 74 359 2 297 2.24e-84 258
MS.gene014381.t1 MTR_1g014690 27.155 232 145 5 77 290 72 297 4.49e-15 75.9
MS.gene014381.t1 MTR_1g014690 28.743 167 115 2 127 290 77 242 3.56e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014381.t1 AT1G20330 86.761 355 47 0 1 355 1 355 0.0 665
MS.gene014381.t1 AT1G76090 81.742 356 65 0 1 356 1 356 0.0 643
MS.gene014381.t1 AT5G13710 40.729 329 183 2 39 355 8 336 5.81e-87 266
MS.gene014381.t1 AT5G13710 40.729 329 183 2 39 355 8 336 5.81e-87 266
MS.gene014381.t1 AT1G64970 23.607 305 204 7 66 354 56 347 1.47e-14 74.3
MS.gene014381.t1 AT1G73600 31.776 107 71 1 116 222 274 378 8.05e-11 63.5
MS.gene014381.t1 AT1G73600 31.776 107 71 1 116 222 288 392 9.75e-11 63.5

Find 96 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCGGTTTCGATCTCTTT+TGG 0.211288 3.2:+90737331 None:intergenic
CGCGCCGTCGAAGCTGTTAT+TGG 0.221898 3.2:+90736949 None:intergenic
AAATGGGTCGGATTGCTTAT+TGG 0.263397 3.2:-90736631 MS.gene014381:CDS
GAAAGAGGTGATGCGCTTCC+TGG 0.264267 3.2:-90736764 MS.gene014381:CDS
CTCTTTACGTTTCATATGAA+TGG 0.284632 3.2:-90736847 MS.gene014381:CDS
ATGGTGGACCCGTTTGAAAA+TGG 0.310972 3.2:-90736648 MS.gene014381:CDS
TAAAATGTATCGACGAAATC+TGG 0.322018 3.2:+90737301 None:intergenic
CGATATTTACGAATGGGGTT+GGG 0.323081 3.2:-90737266 MS.gene014381:CDS
TGAACATCAACGGTTCCTTT+AGG 0.334532 3.2:+90736563 None:intergenic
GGCATCACGGTCAGATTTAC+CGG 0.342355 3.2:+90737213 None:intergenic
TAAGTTGAATTATCTTCTTT+TGG 0.351483 3.2:+90736452 None:intergenic
CATTCACGCGCTAACGTTGT+TGG 0.362166 3.2:-90737082 MS.gene014381:CDS
GTAACGGTTCTGTCTGCTTT+GGG 0.376596 3.2:-90736593 MS.gene014381:CDS
GATCTACGGCCATTTCTTCA+TGG 0.377423 3.2:+90737182 None:intergenic
GGTTGGGTTTGAGGTTGTTA+AGG 0.385526 3.2:-90736702 MS.gene014381:CDS
TCCTCGCCGGCGGTCTCTAC+TGG 0.391323 3.2:-90737477 MS.gene014381:CDS
GGTTGTTAAGGAACGGGATC+TGG 0.398392 3.2:-90736690 MS.gene014381:CDS
GGTAACGGTTCTGTCTGCTT+TGG 0.405488 3.2:-90736594 MS.gene014381:CDS
CACCCGCCTCCATGAAGAAA+TGG 0.407729 3.2:-90737191 MS.gene014381:CDS
GGCTAAGAAGGTTGGGTTTG+AGG 0.408359 3.2:-90736711 MS.gene014381:CDS
ACAGAACCGTTACCACAATA+TGG 0.417640 3.2:+90736603 None:intergenic
CCAACCCCATTCGTAAATAT+CGG 0.433176 3.2:+90737267 None:intergenic
TACTGGTTCGTCTGCGTCCT+CGG 0.437567 3.2:-90737460 MS.gene014381:CDS
GATCTAATCGAGGTTAAATC+TGG 0.437762 3.2:-90737163 MS.gene014381:CDS
CGTTACCGATATTTACGAAT+GGG 0.442701 3.2:-90737272 MS.gene014381:CDS
CCGATATTTACGAATGGGGT+TGG 0.443208 3.2:-90737267 MS.gene014381:CDS
TCTTTACGTTTCATATGAAT+GGG 0.443318 3.2:-90736846 MS.gene014381:CDS
GTTTGAGGTTGTTAAGGAAC+GGG 0.444084 3.2:-90736696 MS.gene014381:CDS
TGGTGGACCCGTTTGAAAAT+GGG 0.448669 3.2:-90736647 MS.gene014381:CDS
GAACATGTTGAGATTATTCA+AGG 0.452409 3.2:-90736791 MS.gene014381:CDS
GATATTTACGAATGGGGTTG+GGG 0.457811 3.2:-90737265 MS.gene014381:CDS
GCGCCGTCGAAGCTGTTATT+GGG 0.458017 3.2:+90736950 None:intergenic
CTCCGGTGCAGAAGAGAGAA+AGG 0.458720 3.2:+90737503 None:intergenic
CTGAAGCGGCTAAGAAGGTT+GGG 0.459708 3.2:-90736718 MS.gene014381:CDS
GCGTAAACTTCTTCAAGATT+AGG 0.459835 3.2:+90736899 None:intergenic
AGTATTTATCGTAACTGTCT+TGG 0.460133 3.2:+90737371 None:intergenic
CGGCCATTTCTTCATGGAGG+CGG 0.460343 3.2:+90737188 None:intergenic
GGCCATTTCTTCATGGAGGC+GGG 0.483293 3.2:+90737189 None:intergenic
ACCGCCGGCGAGGAGGGCTC+CGG 0.486822 3.2:+90737486 None:intergenic
CTCGATGTAGGTTGCGGTGT+TGG 0.487116 3.2:-90737130 MS.gene014381:CDS
CTCAGCCACCGTCTCATCCA+TGG 0.489785 3.2:-90736667 MS.gene014381:CDS
AAACGCGCCACCGATCTATC+CGG 0.493820 3.2:-90737418 MS.gene014381:CDS
ATTATTCAAGGTATTGAAAG+AGG 0.496602 3.2:-90736779 MS.gene014381:CDS
ACCCTTTCTCTCTTCTGCAC+CGG 0.497665 3.2:-90737505 MS.gene014381:CDS
AAAGAGGTGATGCGCTTCCT+GGG 0.500216 3.2:-90736763 MS.gene014381:CDS
TCTCTATGCGATGTTGTTTG+TGG 0.500320 3.2:-90736995 MS.gene014381:CDS
CTCGGCCCTGCCGAACGAAA+AGG 0.505038 3.2:-90737442 MS.gene014381:CDS
GCTGAAGCGGCTAAGAAGGT+TGG 0.506568 3.2:-90736719 MS.gene014381:CDS
ATGAGACGCGATAGCTCTCA+TGG 0.507512 3.2:+90737102 None:intergenic
GATGTAGGTTGCGGTGTTGG+TGG 0.513870 3.2:-90737127 MS.gene014381:CDS
TATAGCTGAAGCGGCTAAGA+AGG 0.514512 3.2:-90736723 MS.gene014381:CDS
GGTGATAAAATTCTCGATGT+AGG 0.518771 3.2:-90737142 MS.gene014381:CDS
TTTAACCTCGATTAGATCTA+CGG 0.521898 3.2:+90737168 None:intergenic
AAGACAGTTACGATAAATAC+TGG 0.522518 3.2:-90737369 MS.gene014381:CDS
CATGGAGGCGGGTGGCATCA+CGG 0.523913 3.2:+90737200 None:intergenic
TTCAGCGGAAATTGAACCGC+CGG 0.527269 3.2:+90737399 None:intergenic
GCTTTGGGAATTGCACCTAA+AGG 0.533645 3.2:-90736578 MS.gene014381:CDS
ATGTAGGTTGCGGTGTTGGT+GGG 0.535396 3.2:-90737126 MS.gene014381:CDS
TCGAAGCTGTTATTGGGAAA+CGG 0.537800 3.2:+90736956 None:intergenic
GGTTTGAGGTTGTTAAGGAA+CGG 0.540682 3.2:-90736697 MS.gene014381:CDS
TCAGCGTAGGTTCTAAGCCC+AGG 0.541956 3.2:+90736746 None:intergenic
TCAGATTTACCGGGAATAGC+GGG 0.543231 3.2:+90737223 None:intergenic
GTAGAGACCGCCGGCGAGGA+GGG 0.547296 3.2:+90737480 None:intergenic
CTGCAGAGAATCATGTGCAT+AGG 0.550727 3.2:+90736479 None:intergenic
CTACGCTGATATAGCTGAAG+CGG 0.552632 3.2:-90736732 MS.gene014381:CDS
AATTGAACCGCCGGATAGAT+CGG 0.553673 3.2:+90737408 None:intergenic
ACCGGAGCCCTCCTCGCCGG+CGG 0.554746 3.2:-90737487 MS.gene014381:CDS
GTCAGATTTACCGGGAATAG+CGG 0.555781 3.2:+90737222 None:intergenic
GCGTAACCATATTGTGGTAA+CGG 0.558003 3.2:-90736609 MS.gene014381:CDS
TGCACCGGAGCCCTCCTCGC+CGG 0.559092 3.2:-90737490 MS.gene014381:CDS
AAAATTCTCGATGTAGGTTG+CGG 0.567893 3.2:-90737136 MS.gene014381:CDS
AAGATTAGGCGCGTGGCACG+TGG 0.572185 3.2:+90736913 None:intergenic
CATTTCTTCATGGAGGCGGG+TGG 0.572835 3.2:+90737192 None:intergenic
TCGTTACCGATATTTACGAA+TGG 0.576012 3.2:-90737273 MS.gene014381:CDS
CGGGTCCACCATGGATGAGA+CGG 0.590737 3.2:+90736659 None:intergenic
TTTCCCAATAACAGCTTCGA+CGG 0.594298 3.2:-90736953 MS.gene014381:CDS
TTATTGGCGTAACCATATTG+TGG 0.596355 3.2:-90736615 MS.gene014381:CDS
CGCTTCAGCTATATCAGCGT+AGG 0.600324 3.2:+90736733 None:intergenic
TATGAAACGTAAAGAGCACC+AGG 0.603847 3.2:+90736854 None:intergenic
GACGAACCAGTAGAGACCGC+CGG 0.606820 3.2:+90737471 None:intergenic
GTTACCGATATTTACGAATG+GGG 0.610865 3.2:-90737271 MS.gene014381:CDS
AGTAGAGACCGCCGGCGAGG+AGG 0.613500 3.2:+90737479 None:intergenic
CTTCTTCAAGATTAGGCGCG+TGG 0.615214 3.2:+90736906 None:intergenic
TCCGGTGCAGAAGAGAGAAA+GGG 0.624782 3.2:+90737504 None:intergenic
GGACCCGTTTGAAAATGGGT+CGG 0.636433 3.2:-90736643 MS.gene014381:CDS
ACCAGTAGAGACCGCCGGCG+AGG 0.640194 3.2:+90737476 None:intergenic
CAGCATCTCATGAACATCAA+CGG 0.644005 3.2:+90736553 None:intergenic
GCATCACGGTCAGATTTACC+GGG 0.648477 3.2:+90737214 None:intergenic
CGCGCCACCGATCTATCCGG+CGG 0.666165 3.2:-90737415 MS.gene014381:CDS
AGCCACCGTCTCATCCATGG+TGG 0.669559 3.2:-90736664 MS.gene014381:CDS
TGAGACGCGATAGCTCTCAT+GGG 0.676213 3.2:+90737103 None:intergenic
GTCCACCATGGATGAGACGG+TGG 0.682031 3.2:+90736662 None:intergenic
CTACGGCCATTTCTTCATGG+AGG 0.696293 3.2:+90737185 None:intergenic
TGAACCGCCGGATAGATCGG+TGG 0.706847 3.2:+90737411 None:intergenic
GAAATCTGGAACTTTCTCAG+CGG 0.713889 3.2:+90737315 None:intergenic
AATGGCCGTAGATCTAATCG+AGG 0.723393 3.2:-90737173 MS.gene014381:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTGAATTATCTTCTTT+TGG + chr3.2:90737513-90737532 None:intergenic 20.0%
! AAATTACACAACAAAAAAGC+TGG - chr3.2:90736937-90736956 MS.gene014381:CDS 25.0%
! TCTTTACGTTTCATATGAAT+GGG - chr3.2:90737116-90737135 MS.gene014381:CDS 25.0%
!! AAGTTTACGCTGAAATTTTT+AGG - chr3.2:90737076-90737095 MS.gene014381:CDS 25.0%
!! AGTTTACGCTGAAATTTTTA+GGG - chr3.2:90737077-90737096 MS.gene014381:CDS 25.0%
!!! ATTATTCAAGGTATTGAAAG+AGG - chr3.2:90737183-90737202 MS.gene014381:CDS 25.0%
AAGACAGTTACGATAAATAC+TGG - chr3.2:90736593-90736612 MS.gene014381:CDS 30.0%
AGTATTTATCGTAACTGTCT+TGG + chr3.2:90736594-90736613 None:intergenic 30.0%
CTCTTTACGTTTCATATGAA+TGG - chr3.2:90737115-90737134 MS.gene014381:CDS 30.0%
GAACATGTTGAGATTATTCA+AGG - chr3.2:90737171-90737190 MS.gene014381:CDS 30.0%
TTTAACCTCGATTAGATCTA+CGG + chr3.2:90736797-90736816 None:intergenic 30.0%
! TAAAATGTATCGACGAAATC+TGG + chr3.2:90736664-90736683 None:intergenic 30.0%
!!! ATTTTTAGGGTTTTGAAACC+TGG - chr3.2:90737090-90737109 MS.gene014381:CDS 30.0%
AAAATTCTCGATGTAGGTTG+CGG - chr3.2:90736826-90736845 MS.gene014381:CDS 35.0%
CGTTACCGATATTTACGAAT+GGG - chr3.2:90736690-90736709 MS.gene014381:CDS 35.0%
GATCTAATCGAGGTTAAATC+TGG - chr3.2:90736799-90736818 MS.gene014381:CDS 35.0%
GCGTAAACTTCTTCAAGATT+AGG + chr3.2:90737066-90737085 None:intergenic 35.0%
GGTGATAAAATTCTCGATGT+AGG - chr3.2:90736820-90736839 MS.gene014381:CDS 35.0%
GTTACCGATATTTACGAATG+GGG - chr3.2:90736691-90736710 MS.gene014381:CDS 35.0%
TCGTTACCGATATTTACGAA+TGG - chr3.2:90736689-90736708 MS.gene014381:CDS 35.0%
TTATTGGCGTAACCATATTG+TGG - chr3.2:90737347-90737366 MS.gene014381:CDS 35.0%
AAATGGGTCGGATTGCTTAT+TGG - chr3.2:90737331-90737350 MS.gene014381:CDS 40.0%
ACAGAACCGTTACCACAATA+TGG + chr3.2:90737362-90737381 None:intergenic 40.0%
CAGCATCTCATGAACATCAA+CGG + chr3.2:90737412-90737431 None:intergenic 40.0%
CCAACCCCATTCGTAAATAT+CGG + chr3.2:90736698-90736717 None:intergenic 40.0%
CGATATTTACGAATGGGGTT+GGG - chr3.2:90736696-90736715 MS.gene014381:CDS 40.0%
GATATTTACGAATGGGGTTG+GGG - chr3.2:90736697-90736716 MS.gene014381:CDS 40.0%
GCGTAACCATATTGTGGTAA+CGG - chr3.2:90737353-90737372 MS.gene014381:CDS 40.0%
TCGAAGCTGTTATTGGGAAA+CGG + chr3.2:90737009-90737028 None:intergenic 40.0%
TGAACATCAACGGTTCCTTT+AGG + chr3.2:90737402-90737421 None:intergenic 40.0%
TTTCCCAATAACAGCTTCGA+CGG - chr3.2:90737009-90737028 MS.gene014381:CDS 40.0%
! AATCCGACCCATTTTCAAAC+GGG + chr3.2:90737325-90737344 None:intergenic 40.0%
! CAATCCGACCCATTTTCAAA+CGG + chr3.2:90737326-90737345 None:intergenic 40.0%
! GAAATCTGGAACTTTCTCAG+CGG + chr3.2:90736650-90736669 None:intergenic 40.0%
! GGTTTGAGGTTGTTAAGGAA+CGG - chr3.2:90737265-90737284 MS.gene014381:CDS 40.0%
! GTTTGAGGTTGTTAAGGAAC+GGG - chr3.2:90737266-90737285 MS.gene014381:CDS 40.0%
! TCTCTATGCGATGTTGTTTG+TGG - chr3.2:90736967-90736986 MS.gene014381:CDS 40.0%
!! AATAGCGGGTGAAAAATGGA+AGG + chr3.2:90736728-90736747 None:intergenic 40.0%
!! TATGAAACGTAAAGAGCACC+AGG + chr3.2:90737111-90737130 None:intergenic 40.0%
!!! ACTGCTGACTTTTTGACAAG+AGG - chr3.2:90737438-90737457 MS.gene014381:CDS 40.0%
!!! ACTGTCTTGGACTTTTTCAG+CGG + chr3.2:90736581-90736600 None:intergenic 40.0%
!!! CTGCTGACTTTTTGACAAGA+GGG - chr3.2:90737439-90737458 MS.gene014381:CDS 40.0%
!!! TGCTGACTTTTTGACAAGAG+GGG - chr3.2:90737440-90737459 MS.gene014381:CDS 40.0%
AATGGCCGTAGATCTAATCG+AGG - chr3.2:90736789-90736808 MS.gene014381:CDS 45.0%
AATTGAACCGCCGGATAGAT+CGG + chr3.2:90736557-90736576 None:intergenic 45.0%
CCGATATTTACGAATGGGGT+TGG - chr3.2:90736695-90736714 MS.gene014381:CDS 45.0%
CTACGCTGATATAGCTGAAG+CGG - chr3.2:90737230-90737249 MS.gene014381:CDS 45.0%
CTGCAGAGAATCATGTGCAT+AGG + chr3.2:90737486-90737505 None:intergenic 45.0%
GATCTACGGCCATTTCTTCA+TGG + chr3.2:90736783-90736802 None:intergenic 45.0%
GTAACGGTTCTGTCTGCTTT+GGG - chr3.2:90737369-90737388 MS.gene014381:CDS 45.0%
GTCAGATTTACCGGGAATAG+CGG + chr3.2:90736743-90736762 None:intergenic 45.0%
TATAGCTGAAGCGGCTAAGA+AGG - chr3.2:90737239-90737258 MS.gene014381:CDS 45.0%
TCAGATTTACCGGGAATAGC+GGG + chr3.2:90736742-90736761 None:intergenic 45.0%
! ATTTTCAAACGGGTCCACCA+TGG + chr3.2:90737315-90737334 None:intergenic 45.0%
! CAGCGGTTTCGATCTCTTTT+GGG + chr3.2:90736633-90736652 None:intergenic 45.0%
! CATTTTTCACCCGCTATTCC+CGG - chr3.2:90736730-90736749 MS.gene014381:CDS 45.0%
! GGTTGGGTTTGAGGTTGTTA+AGG - chr3.2:90737260-90737279 MS.gene014381:CDS 45.0%
! TCAGCGGTTTCGATCTCTTT+TGG + chr3.2:90736634-90736653 None:intergenic 45.0%
! TGGTGGACCCGTTTGAAAAT+GGG - chr3.2:90737315-90737334 MS.gene014381:CDS 45.0%
!! ATGGTGGACCCGTTTGAAAA+TGG - chr3.2:90737314-90737333 MS.gene014381:CDS 45.0%
!! GCTGACTTTTTGACAAGAGG+GGG - chr3.2:90737441-90737460 MS.gene014381:CDS 45.0%
!! GCTTTGGGAATTGCACCTAA+AGG - chr3.2:90737384-90737403 MS.gene014381:CDS 45.0%
AAAGAGGTGATGCGCTTCCT+GGG - chr3.2:90737199-90737218 MS.gene014381:CDS 50.0%
ACCCTTTCTCTCTTCTGCAC+CGG - chr3.2:90736457-90736476 MS.gene014381:CDS 50.0%
ATGAGACGCGATAGCTCTCA+TGG + chr3.2:90736863-90736882 None:intergenic 50.0%
CATTCACGCGCTAACGTTGT+TGG - chr3.2:90736880-90736899 MS.gene014381:CDS 50.0%
CGCTTCAGCTATATCAGCGT+AGG + chr3.2:90737232-90737251 None:intergenic 50.0%
CTACGGCCATTTCTTCATGG+AGG + chr3.2:90736780-90736799 None:intergenic 50.0%
CTGAAGCGGCTAAGAAGGTT+GGG - chr3.2:90737244-90737263 MS.gene014381:CDS 50.0%
CTTCTTCAAGATTAGGCGCG+TGG + chr3.2:90737059-90737078 None:intergenic 50.0%
GCATCACGGTCAGATTTACC+GGG + chr3.2:90736751-90736770 None:intergenic 50.0%
GGACCCGTTTGAAAATGGGT+CGG - chr3.2:90737319-90737338 MS.gene014381:CDS 50.0%
GGCATCACGGTCAGATTTAC+CGG + chr3.2:90736752-90736771 None:intergenic 50.0%
GGCTAAGAAGGTTGGGTTTG+AGG - chr3.2:90737251-90737270 MS.gene014381:CDS 50.0%
GGTTGTTAAGGAACGGGATC+TGG - chr3.2:90737272-90737291 MS.gene014381:CDS 50.0%
TCCGGTGCAGAAGAGAGAAA+GGG + chr3.2:90736461-90736480 None:intergenic 50.0%
TGAGACGCGATAGCTCTCAT+GGG + chr3.2:90736862-90736881 None:intergenic 50.0%
TTCAGCGGAAATTGAACCGC+CGG + chr3.2:90736566-90736585 None:intergenic 50.0%
TTGACAAGAGGGGGTGATAC+TGG - chr3.2:90737450-90737469 MS.gene014381:CDS 50.0%
! CGGTTTCGATCTCTTTTGGG+CGG + chr3.2:90736630-90736649 None:intergenic 50.0%
! GGTAACGGTTCTGTCTGCTT+TGG - chr3.2:90737368-90737387 MS.gene014381:CDS 50.0%
! GTTTGCCTTTTCGTTCGGCA+GGG + chr3.2:90736528-90736547 None:intergenic 50.0%
! TTTCGATCTCTTTTGGGCGG+CGG + chr3.2:90736627-90736646 None:intergenic 50.0%
!! ATGTAGGTTGCGGTGTTGGT+GGG - chr3.2:90736836-90736855 MS.gene014381:CDS 50.0%
!! CGGGAATAGCGGGTGAAAAA+TGG + chr3.2:90736732-90736751 None:intergenic 50.0%
AAACGCGCCACCGATCTATC+CGG - chr3.2:90736544-90736563 MS.gene014381:CDS 55.0%
CACCCGCCTCCATGAAGAAA+TGG - chr3.2:90736771-90736790 MS.gene014381:CDS 55.0%
CATTTCTTCATGGAGGCGGG+TGG + chr3.2:90736773-90736792 None:intergenic 55.0%
CGGCCATTTCTTCATGGAGG+CGG + chr3.2:90736777-90736796 None:intergenic 55.0%
CTCCGGTGCAGAAGAGAGAA+AGG + chr3.2:90736462-90736481 None:intergenic 55.0%
CTCGATGTAGGTTGCGGTGT+TGG - chr3.2:90736832-90736851 MS.gene014381:CDS 55.0%
GAAAGAGGTGATGCGCTTCC+TGG - chr3.2:90737198-90737217 MS.gene014381:CDS 55.0%
GCGCCGTCGAAGCTGTTATT+GGG + chr3.2:90737015-90737034 None:intergenic 55.0%
GCTGAAGCGGCTAAGAAGGT+TGG - chr3.2:90737243-90737262 MS.gene014381:CDS 55.0%
GGCCATTTCTTCATGGAGGC+GGG + chr3.2:90736776-90736795 None:intergenic 55.0%
! CGTTTGCCTTTTCGTTCGGC+AGG + chr3.2:90736529-90736548 None:intergenic 55.0%
! GATGTAGGTTGCGGTGTTGG+TGG - chr3.2:90736835-90736854 MS.gene014381:CDS 55.0%
! GGCGCGTTTGCCTTTTCGTT+CGG + chr3.2:90736533-90736552 None:intergenic 55.0%
!! TACTGGTTCGTCTGCGTCCT+CGG - chr3.2:90736502-90736521 MS.gene014381:CDS 55.0%
!! TCAGCGTAGGTTCTAAGCCC+AGG + chr3.2:90737219-90737238 None:intergenic 55.0%
AAGATTAGGCGCGTGGCACG+TGG + chr3.2:90737052-90737071 None:intergenic 60.0%
AGCCACCGTCTCATCCATGG+TGG - chr3.2:90737298-90737317 MS.gene014381:CDS 60.0%
CGCGCCGTCGAAGCTGTTAT+TGG + chr3.2:90737016-90737035 None:intergenic 60.0%
CGGGTCCACCATGGATGAGA+CGG + chr3.2:90737306-90737325 None:intergenic 60.0%
CTCAGCCACCGTCTCATCCA+TGG - chr3.2:90737295-90737314 MS.gene014381:CDS 60.0%
GACGAACCAGTAGAGACCGC+CGG + chr3.2:90736494-90736513 None:intergenic 60.0%
GTCCACCATGGATGAGACGG+TGG + chr3.2:90737303-90737322 None:intergenic 60.0%
TGAACCGCCGGATAGATCGG+TGG + chr3.2:90736554-90736573 None:intergenic 60.0%
CATGGAGGCGGGTGGCATCA+CGG + chr3.2:90736765-90736784 None:intergenic 65.0%
CTCGGCCCTGCCGAACGAAA+AGG - chr3.2:90736520-90736539 MS.gene014381:CDS 65.0%
! CTTTTCGTTCGGCAGGGCCG+AGG + chr3.2:90736522-90736541 None:intergenic 65.0%
ACCAGTAGAGACCGCCGGCG+AGG + chr3.2:90736489-90736508 None:intergenic 70.0%
AGTAGAGACCGCCGGCGAGG+AGG + chr3.2:90736486-90736505 None:intergenic 70.0%
CGCGCCACCGATCTATCCGG+CGG - chr3.2:90736547-90736566 MS.gene014381:CDS 70.0%
GTAGAGACCGCCGGCGAGGA+GGG + chr3.2:90736485-90736504 None:intergenic 70.0%
TCCTCGCCGGCGGTCTCTAC+TGG - chr3.2:90736485-90736504 MS.gene014381:CDS 70.0%
TGCACCGGAGCCCTCCTCGC+CGG - chr3.2:90736472-90736491 MS.gene014381:CDS 75.0%
! ACCGCCGGCGAGGAGGGCTC+CGG + chr3.2:90736479-90736498 None:intergenic 80.0%
! ACCGGAGCCCTCCTCGCCGG+CGG - chr3.2:90736475-90736494 MS.gene014381:CDS 80.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 90736451 90737533 90736451 ID=MS.gene014381
chr3.2 mRNA 90736451 90737533 90736451 ID=MS.gene014381.t1;Parent=MS.gene014381
chr3.2 exon 90736451 90737533 90736451 ID=MS.gene014381.t1.exon1;Parent=MS.gene014381.t1
chr3.2 CDS 90736451 90737533 90736451 ID=cds.MS.gene014381.t1;Parent=MS.gene014381.t1
Gene Sequence

>MS.gene014381

ATGGATACCCTTTCTCTCTTCTGCACCGGAGCCCTCCTCGCCGGCGGTCTCTACTGGTTCGTCTGCGTCCTCGGCCCTGCCGAACGAAAAGGCAAACGCGCCACCGATCTATCCGGCGGTTCAATTTCCGCTGAAAAAGTCCAAGACAGTTACGATAAATACTGGTCTTTCTTCCGCCGCCCAAAAGAGATCGAAACCGCTGAGAAAGTTCCAGATTTCGTCGATACATTTTACAATCTCGTTACCGATATTTACGAATGGGGTTGGGGTCAATCCTTCCATTTTTCACCCGCTATTCCCGGTAAATCTGACCGTGATGCCACCCGCCTCCATGAAGAAATGGCCGTAGATCTAATCGAGGTTAAATCTGGTGATAAAATTCTCGATGTAGGTTGCGGTGTTGGTGGGCCCATGAGAGCTATCGCGTCTCATTCACGCGCTAACGTTGTTGGTATCACGATCAACGAGTATCAAGTGAATCGTGCGAAATTACACAACAAAAAAGCTGGTTTAGATTCTCTATGCGATGTTGTTTGTGGTAATTTTCTTAAGATGCCGTTTCCCAATAACAGCTTCGACGGCGCGTATTCAATTGAAGCCACGTGCCACGCGCCTAATCTTGAAGAAGTTTACGCTGAAATTTTTAGGGTTTTGAAACCTGGTGCTCTTTACGTTTCATATGAATGGGTCACAACTGAGAAATTTGTAGCTGAAAACGCTGAACATGTTGAGATTATTCAAGGTATTGAAAGAGGTGATGCGCTTCCTGGGCTTAGAACCTACGCTGATATAGCTGAAGCGGCTAAGAAGGTTGGGTTTGAGGTTGTTAAGGAACGGGATCTGGCTCAGCCACCGTCTCATCCATGGTGGACCCGTTTGAAAATGGGTCGGATTGCTTATTGGCGTAACCATATTGTGGTAACGGTTCTGTCTGCTTTGGGAATTGCACCTAAAGGAACCGTTGATGTTCATGAGATGCTGTTCAAGACTGCTGACTTTTTGACAAGAGGGGGTGATACTGGAATTTTCTCTCCTATGCACATGATTCTCTGCAGAAAACCAAAAGAAGATAATTCAACTTAA
Protein sequence

>MS.gene014381.t1

MDTLSLFCTGALLAGGLYWFVCVLGPAERKGKRATDLSGGSISAEKVQDSYDKYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAIPGKSDRDATRLHEEMAVDLIEVKSGDKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRAKLHNKKAGLDSLCDVVCGNFLKMPFPNNSFDGAYSIEATCHAPNLEEVYAEIFRVLKPGALYVSYEWVTTEKFVAENAEHVEIIQGIERGDALPGLRTYADIAEAAKKVGFEVVKERDLAQPPSHPWWTRLKMGRIAYWRNHIVVTVLSALGIAPKGTVDVHEMLFKTADFLTRGGDTGIFSPMHMILCRKPKEDNST