Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91862.t1 | XP_003599380.1 | 99.4 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 5.80E-198 | 699.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91862.t1 | Q9LM02 | 86.3 | 335 | 46 | 0 | 1 | 335 | 1 | 335 | 1.8e-176 | 619.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91862.t1 | B7FHU0 | 99.4 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 4.2e-198 | 699.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69360 | MS.gene91862 | PPI |
| MS.gene064797 | MS.gene91862 | PPI |
| MS.gene014381 | MS.gene91862 | PPI |
| MS.gene91862 | MS.gene52804 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91862.t1 | MTR_3g032530 | 99.412 | 340 | 2 | 0 | 1 | 340 | 1 | 340 | 0.0 | 708 |
| MS.gene91862.t1 | MTR_3g032530 | 99.663 | 297 | 1 | 0 | 44 | 340 | 1 | 297 | 0.0 | 623 |
| MS.gene91862.t1 | MTR_3g114780 | 41.667 | 336 | 178 | 4 | 8 | 340 | 39 | 359 | 3.95e-88 | 269 |
| MS.gene91862.t1 | MTR_7g012060 | 53.933 | 89 | 12 | 2 | 148 | 207 | 65 | 153 | 4.96e-23 | 94.0 |
| MS.gene91862.t1 | MTR_1g014690 | 26.882 | 186 | 125 | 3 | 45 | 220 | 69 | 253 | 1.31e-13 | 71.2 |
| MS.gene91862.t1 | MTR_6g069600 | 30.178 | 169 | 105 | 4 | 33 | 201 | 238 | 393 | 1.32e-13 | 72.0 |
| MS.gene91862.t1 | MTR_1g014690 | 30.400 | 125 | 86 | 1 | 96 | 220 | 75 | 198 | 4.19e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91862.t1 | AT5G13710 | 86.269 | 335 | 46 | 0 | 1 | 335 | 1 | 335 | 0.0 | 625 |
| MS.gene91862.t1 | AT5G13710 | 86.269 | 335 | 46 | 0 | 1 | 335 | 1 | 335 | 0.0 | 625 |
| MS.gene91862.t1 | AT1G20330 | 42.515 | 334 | 172 | 5 | 8 | 337 | 39 | 356 | 4.08e-90 | 274 |
| MS.gene91862.t1 | AT1G76090 | 41.176 | 340 | 181 | 5 | 4 | 339 | 34 | 358 | 3.28e-87 | 266 |
| MS.gene91862.t1 | AT1G48600 | 31.176 | 170 | 105 | 5 | 83 | 251 | 256 | 414 | 8.03e-14 | 72.4 |
| MS.gene91862.t1 | AT1G48600 | 31.176 | 170 | 105 | 5 | 83 | 251 | 272 | 430 | 8.20e-14 | 72.4 |
| MS.gene91862.t1 | AT1G73600 | 35.088 | 114 | 72 | 1 | 90 | 203 | 277 | 388 | 1.38e-13 | 72.0 |
| MS.gene91862.t1 | AT1G73600 | 35.088 | 114 | 72 | 1 | 90 | 203 | 291 | 402 | 1.41e-13 | 72.0 |
| MS.gene91862.t1 | AT3G18000 | 31.288 | 163 | 103 | 4 | 89 | 251 | 277 | 430 | 1.51e-13 | 71.6 |
| MS.gene91862.t1 | AT1G64970 | 34.615 | 104 | 68 | 0 | 98 | 201 | 130 | 233 | 5.15e-13 | 69.7 |
Find 74 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGTTGGTTGTGGTATT+GGG | 0.139062 | 3.2:-21837331 | MS.gene91862:CDS |
| AATCGAGAAATTTCTCTTAA+TGG | 0.184007 | 3.2:+21837305 | None:intergenic |
| TTGGATGTTGGTTGTGGTAT+TGG | 0.186951 | 3.2:-21837332 | MS.gene91862:CDS |
| CAGAAGCAATACCATATTTC+TGG | 0.200578 | 3.2:+21834095 | None:intergenic |
| TAAGAGAAATTTCTCGATTC+AGG | 0.202299 | 3.2:-21837301 | MS.gene91862:intron |
| TGCAGCTCGACATCTGTTAC+AGG | 0.301259 | 3.2:-21836835 | MS.gene91862:intron |
| ATGGACACCTTGTTGCAAAA+TGG | 0.313547 | 3.2:+21837626 | None:intergenic |
| CAGGCACTCAATCGCAAAAC+TGG | 0.331030 | 3.2:-21836383 | MS.gene91862:CDS |
| CACTTCCTTGCTTTACAACT+TGG | 0.357247 | 3.2:-21837484 | MS.gene91862:CDS |
| GAAAGCTAATTATAGTGATA+TGG | 0.367025 | 3.2:-21838367 | MS.gene91862:intron |
| GTTCAGTTGCTTTCTGAAGC+AGG | 0.378507 | 3.2:+21832818 | None:intergenic |
| GGATGTTGGTTGTGGTATTG+GGG | 0.388964 | 3.2:-21837330 | MS.gene91862:CDS |
| GTGAAGGCTCTGGAGTTTGT+TGG | 0.407221 | 3.2:-21833770 | MS.gene91862:CDS |
| TAGAGCTTCAAGACACTTTG+TGG | 0.411789 | 3.2:+21834682 | None:intergenic |
| ATACCTTTCCCCGGGTGATC+TGG | 0.426976 | 3.2:+21836794 | None:intergenic |
| ACTTAGCAGCTTCCGTCTTA+CGG | 0.429065 | 3.2:-21834136 | MS.gene91862:CDS |
| AATATTTCACATACAGCATC+TGG | 0.437219 | 3.2:+21835214 | None:intergenic |
| TGAACCCTTTGACTCCCCTT+CGG | 0.449592 | 3.2:+21833740 | None:intergenic |
| ATGGATTTGGCTTCGAATCT+CGG | 0.452661 | 3.2:-21840381 | MS.gene91862:CDS |
| AGCTTCCGTCTTACGGCTGT+TGG | 0.465882 | 3.2:-21834129 | MS.gene91862:CDS |
| TCTACCGATGCAGATGGGTA+GGG | 0.478854 | 3.2:-21837540 | MS.gene91862:intron |
| TTACAACTTGGTCTTAAGCC+TGG | 0.479986 | 3.2:-21837472 | MS.gene91862:CDS |
| ATACCATATTTCTGGTGAAA+AGG | 0.482576 | 3.2:+21834103 | None:intergenic |
| CTGCAGGCAGAAATTGAGAT+TGG | 0.490804 | 3.2:-21834731 | MS.gene91862:intron |
| GCTGCAGAGGGTCTAGTTGA+AGG | 0.505379 | 3.2:-21833701 | MS.gene91862:CDS |
| ACATTTGTAGGTGAAGGCTC+TGG | 0.507945 | 3.2:-21833780 | MS.gene91862:intron |
| GAGAAGTATCATGCATCCTA+TGG | 0.508363 | 3.2:-21838408 | MS.gene91862:CDS |
| GTTTGTTGGACTTGCTCCGA+AGG | 0.508709 | 3.2:-21833756 | MS.gene91862:CDS |
| TTGCTCCGAAGGGGAGTCAA+AGG | 0.509030 | 3.2:-21833745 | MS.gene91862:CDS |
| TTTGTATGTGAAGGTCATAT+GGG | 0.514447 | 3.2:-21834223 | MS.gene91862:intron |
| GGTCATATGGGAGAAAGATC+TGG | 0.515289 | 3.2:-21834211 | MS.gene91862:CDS |
| TACAGCATCTGGTGCATGGC+AGG | 0.521675 | 3.2:+21835225 | None:intergenic |
| TAAGCAGCAAAACATTGGCC+AGG | 0.524306 | 3.2:+21834891 | None:intergenic |
| GAGAAGTGACTCTTGTCTAA+AGG | 0.526724 | 3.2:+21834159 | None:intergenic |
| CATCAGACTCTCCTCTTCCA+TGG | 0.527566 | 3.2:-21834188 | MS.gene91862:CDS |
| GCAGAAATTGAGATTGGTGA+TGG | 0.534551 | 3.2:-21834725 | MS.gene91862:CDS |
| CTACCGATGCAGATGGGTAG+GGG | 0.535056 | 3.2:-21837539 | MS.gene91862:intron |
| GGTTCAAGATTTCCTTGAGA+AGG | 0.535966 | 3.2:-21833723 | MS.gene91862:CDS |
| TGGTCTTAAGCCTGGACAGA+AGG | 0.541368 | 3.2:-21837464 | MS.gene91862:intron |
| GACCCTCTGCAGCCTTCTCA+AGG | 0.541641 | 3.2:+21833711 | None:intergenic |
| TTTGTGGTCAATCTAATGTC+AGG | 0.541951 | 3.2:+21834698 | None:intergenic |
| TTCATCCTCTTGACCTCCAT+AGG | 0.544369 | 3.2:+21838392 | None:intergenic |
| CTTGAAGCTCTAAAGCAAGC+AGG | 0.547652 | 3.2:-21834671 | MS.gene91862:CDS |
| TTCCTTGAGAAGGCTGCAGA+GGG | 0.556231 | 3.2:-21833713 | MS.gene91862:CDS |
| GGCGTCCAACAGCCGTAAGA+CGG | 0.556704 | 3.2:+21834124 | None:intergenic |
| AAGATGAAAACCTTCTGTCC+AGG | 0.557975 | 3.2:+21837454 | None:intergenic |
| TTCTACCGATGCAGATGGGT+AGG | 0.559636 | 3.2:-21837541 | MS.gene91862:intron |
| ATTCATAAGCAGCAAAACAT+TGG | 0.559750 | 3.2:+21834886 | None:intergenic |
| TTTGTTGGACTTGCTCCGAA+GGG | 0.560389 | 3.2:-21833755 | MS.gene91862:CDS |
| TCAAAACACATACCTTTCCC+CGG | 0.560769 | 3.2:+21836785 | None:intergenic |
| ATGGAGGTCAAGAGGATGAA+AGG | 0.562038 | 3.2:-21838389 | MS.gene91862:CDS |
| AAAGGCAAGTACCATGGAAG+AGG | 0.562591 | 3.2:+21834177 | None:intergenic |
| GTACCAGATCACCCGGGGAA+AGG | 0.569425 | 3.2:-21836797 | MS.gene91862:intron |
| CACATACAGCATCTGGTGCA+TGG | 0.575106 | 3.2:+21835221 | None:intergenic |
| TCAAAACTATTGTCTTCGAA+TGG | 0.577172 | 3.2:+21835271 | None:intergenic |
| CAGAAATTGAGATTGGTGAT+GGG | 0.583752 | 3.2:-21834724 | MS.gene91862:CDS |
| TTTCCTTGAGAAGGCTGCAG+AGG | 0.588645 | 3.2:-21833714 | MS.gene91862:CDS |
| TGCTCCGAAGGGGAGTCAAA+GGG | 0.593371 | 3.2:-21833744 | MS.gene91862:CDS |
| ATAATGAGTACCAGATCACC+CGG | 0.593613 | 3.2:-21836804 | MS.gene91862:CDS |
| GATGTTGGTTGTGGTATTGG+GGG | 0.596492 | 3.2:-21837329 | MS.gene91862:CDS |
| TAAGACCAAGTTGTAAAGCA+AGG | 0.600321 | 3.2:+21837479 | None:intergenic |
| TGCATCCTATGGAGGTCAAG+AGG | 0.610680 | 3.2:-21838397 | MS.gene91862:CDS |
| TTGTCTAAAGGCAAGTACCA+TGG | 0.616950 | 3.2:+21834171 | None:intergenic |
| CAAAACACATACCTTTCCCC+GGG | 0.617984 | 3.2:+21836786 | None:intergenic |
| AGCATCTGGTGCATGGCAGG+TGG | 0.619604 | 3.2:+21835228 | None:intergenic |
| TTGTTGGACTTGCTCCGAAG+GGG | 0.623793 | 3.2:-21833754 | MS.gene91862:CDS |
| GCAGAGGGTCTAGTTGAAGG+TGG | 0.639355 | 3.2:-21833698 | MS.gene91862:CDS |
| AAGTATCATGCATCCTATGG+AGG | 0.651186 | 3.2:-21838405 | MS.gene91862:CDS |
| CAAGACTTGCAACTTCGTCA+AGG | 0.656952 | 3.2:-21836354 | MS.gene91862:intron |
| ACTCAATCGCAAAACTGGAG+TGG | 0.680106 | 3.2:-21836378 | MS.gene91862:CDS |
| TAATGAGTACCAGATCACCC+GGG | 0.687827 | 3.2:-21836803 | MS.gene91862:CDS |
| GATTTGGCTTCGAATCTCGG+TGG | 0.689368 | 3.2:-21840378 | MS.gene91862:CDS |
| AATGAGTACCAGATCACCCG+GGG | 0.722625 | 3.2:-21836802 | MS.gene91862:CDS |
| AGAGACGCACTTATCGACAG+CGG | 0.752289 | 3.2:+21840329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 21832820 | 21840403 | 21832820 | ID=MS.gene91862 |
| chr3.2 | mRNA | 21832820 | 21840403 | 21832820 | ID=MS.gene91862.t1;Parent=MS.gene91862 |
| chr3.2 | exon | 21840339 | 21840403 | 21840339 | ID=MS.gene91862.t1.exon1;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21840339 | 21840403 | 21840339 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21838368 | 21838434 | 21838368 | ID=MS.gene91862.t1.exon2;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21838368 | 21838434 | 21838368 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21837634 | 21837707 | 21837634 | ID=MS.gene91862.t1.exon3;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21837634 | 21837707 | 21837634 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21837465 | 21837549 | 21837465 | ID=MS.gene91862.t1.exon4;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21837465 | 21837549 | 21837465 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21837302 | 21837357 | 21837302 | ID=MS.gene91862.t1.exon5;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21837302 | 21837357 | 21837302 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21836798 | 21836852 | 21836798 | ID=MS.gene91862.t1.exon6;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21836798 | 21836852 | 21836798 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21836355 | 21836402 | 21836355 | ID=MS.gene91862.t1.exon7;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21836355 | 21836402 | 21836355 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21835228 | 21835311 | 21835228 | ID=MS.gene91862.t1.exon8;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21835228 | 21835311 | 21835228 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21834833 | 21834949 | 21834833 | ID=MS.gene91862.t1.exon9;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21834833 | 21834949 | 21834833 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21834664 | 21834747 | 21834664 | ID=MS.gene91862.t1.exon10;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21834664 | 21834747 | 21834664 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21834107 | 21834232 | 21834107 | ID=MS.gene91862.t1.exon11;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21834107 | 21834232 | 21834107 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21833695 | 21833792 | 21833695 | ID=MS.gene91862.t1.exon12;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21833695 | 21833792 | 21833695 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| chr3.2 | exon | 21832820 | 21832883 | 21832820 | ID=MS.gene91862.t1.exon13;Parent=MS.gene91862.t1 |
| chr3.2 | CDS | 21832820 | 21832883 | 21832820 | ID=cds.MS.gene91862.t1;Parent=MS.gene91862.t1 |
| Gene Sequence |
| Protein sequence |