AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014546

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014546.t1 MTR_3g111600 98.932 281 3 0 64 344 1 281 0.0 576
MS.gene014546.t1 MTR_1g021855 80.183 328 53 2 29 344 40 367 0.0 546
MS.gene014546.t1 MTR_8g078240 71.827 323 84 2 28 343 22 344 3.84e-174 487
MS.gene014546.t1 MTR_5g019220 69.617 339 82 3 27 344 29 367 4.50e-173 485
MS.gene014546.t1 MTR_3g092310 63.607 305 104 3 35 337 34 333 1.13e-149 425
MS.gene014546.t1 MTR_5g036580 59.295 312 118 2 35 337 49 360 5.73e-139 400
MS.gene014546.t1 MTR_7g094230 60.396 303 111 2 35 337 51 344 9.23e-139 398
MS.gene014546.t1 MTR_4g118030 58.900 309 120 3 35 342 42 344 4.28e-137 393
MS.gene014546.t1 MTR_7g109210 59.295 312 122 3 35 344 51 359 1.58e-136 392
MS.gene014546.t1 MTR_6g008900 57.778 315 119 4 34 335 46 359 4.64e-134 387
MS.gene014546.t1 MTR_4g071620 57.778 315 119 4 34 335 46 359 4.64e-134 387
MS.gene014546.t1 MTR_1g089820 61.462 301 107 2 35 335 54 345 6.03e-134 385
MS.gene014546.t1 MTR_2g461670 34.375 192 115 6 143 333 395 576 2.88e-24 103
MS.gene014546.t1 MTR_4g109890 34.031 191 117 5 143 333 340 521 1.58e-22 98.6
MS.gene014546.t1 MTR_2g082650 30.303 198 122 8 143 333 209 397 3.31e-20 91.3
MS.gene014546.t1 MTR_2g082650 30.303 198 122 8 143 333 338 526 7.27e-20 90.9
MS.gene014546.t1 MTR_3g107930 28.283 198 133 5 143 340 469 657 1.23e-19 90.5
MS.gene014546.t1 MTR_3g107930 28.283 198 133 5 143 340 392 580 1.29e-19 90.1
MS.gene014546.t1 MTR_2g015550 31.522 184 119 5 143 326 339 515 1.95e-19 89.7
MS.gene014546.t1 MTR_4g133570 30.303 198 122 8 143 333 261 449 2.44e-19 89.0
MS.gene014546.t1 MTR_7g012370 30.387 181 113 7 143 316 334 508 2.51e-19 89.4
MS.gene014546.t1 MTR_7g055600 27.778 198 134 5 143 340 238 426 2.09e-18 86.3
MS.gene014546.t1 MTR_7g057530 27.778 198 134 5 143 340 238 426 2.09e-18 86.3
MS.gene014546.t1 MTR_8g092000 27.835 194 125 6 143 333 384 565 2.26e-18 86.7
MS.gene014546.t1 MTR_7g075840 26.768 198 136 5 143 340 468 656 8.61e-18 84.7
MS.gene014546.t1 MTR_2g027740 29.609 179 114 5 143 318 471 640 8.69e-18 84.7
MS.gene014546.t1 MTR_8g033360 30.345 145 98 3 143 287 437 578 5.34e-17 82.4
MS.gene014546.t1 MTR_6g016380 27.225 191 130 5 143 333 359 540 2.92e-15 77.0
MS.gene014546.t1 MTR_3g452360 26.699 206 122 8 143 333 175 366 3.86e-15 76.3
MS.gene014546.t1 MTR_7g096160 27.568 185 125 6 141 322 453 631 4.37e-15 76.6
MS.gene014546.t1 MTR_3g452360 26.699 206 122 8 143 333 324 515 4.45e-15 76.6
MS.gene014546.t1 MTR_6g013840 28.934 197 126 6 143 333 329 517 1.64e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014546.t1 AT1G19300 73.574 333 75 2 25 344 19 351 4.32e-171 479
MS.gene014546.t1 AT3G50760 71.656 314 83 3 33 340 23 336 5.74e-170 476
MS.gene014546.t1 AT4G02130 59.467 338 124 5 11 337 8 343 1.44e-144 412
MS.gene014546.t1 AT4G02130 59.467 338 124 5 11 337 8 343 1.44e-144 412
MS.gene014546.t1 AT4G02130 59.467 338 124 5 11 337 8 343 1.44e-144 412
MS.gene014546.t1 AT1G24170 59.621 317 114 2 35 337 50 366 6.83e-141 405
MS.gene014546.t1 AT3G06260 59.016 305 118 3 35 338 46 344 9.95e-140 400
MS.gene014546.t1 AT1G70090 56.305 341 133 4 13 337 23 363 6.38e-139 400
MS.gene014546.t1 AT1G70090 56.305 341 133 4 13 337 23 363 6.38e-139 400
MS.gene014546.t1 AT3G28340 60.390 308 116 3 37 338 44 351 1.30e-138 398
MS.gene014546.t1 AT1G02720 60.784 306 116 3 35 337 54 358 1.24e-136 393
MS.gene014546.t1 AT1G02720 60.784 306 116 3 35 337 54 358 1.24e-136 393
MS.gene014546.t1 AT1G13250 59.271 329 125 5 24 344 18 345 4.62e-136 390
MS.gene014546.t1 AT3G62660 63.036 303 107 3 35 335 56 355 4.79e-136 391
MS.gene014546.t1 AT1G18580 33.152 184 117 4 143 326 342 519 8.30e-23 99.8
MS.gene014546.t1 AT5G54690 30.303 198 122 8 143 333 331 519 5.56e-21 94.4
MS.gene014546.t1 AT3G61130 29.293 198 131 5 143 340 477 665 1.28e-20 93.6
MS.gene014546.t1 AT5G47780 31.148 183 114 5 143 322 420 593 1.32e-20 93.2
MS.gene014546.t1 AT3G58790 32.000 200 117 9 143 333 204 393 8.76e-20 90.1
MS.gene014546.t1 AT3G58790 32.000 200 117 9 143 333 336 525 9.95e-20 90.5
MS.gene014546.t1 AT3G25140 30.256 195 126 5 143 335 363 549 1.50e-19 90.1
MS.gene014546.t1 AT4G38270 29.167 192 130 4 143 334 480 665 5.46e-19 88.6
MS.gene014546.t1 AT4G38270 29.167 192 130 4 143 334 484 669 6.07e-19 88.6
MS.gene014546.t1 AT3G01040 27.411 197 129 6 143 333 296 484 9.15e-19 87.4
MS.gene014546.t1 AT3G01040 27.411 197 129 6 143 333 329 517 9.53e-19 87.4
MS.gene014546.t1 AT3G01040 27.411 197 129 6 143 333 329 517 9.53e-19 87.4
MS.gene014546.t1 AT5G15470 26.396 197 131 6 143 333 329 517 8.95e-18 84.7
MS.gene014546.t1 AT2G30575 30.726 179 115 6 143 318 411 583 1.19e-15 78.6
MS.gene014546.t1 AT1G06780 29.545 176 117 4 143 316 403 573 1.76e-15 77.8
MS.gene014546.t1 AT1G06780 29.545 176 117 4 143 316 390 560 2.63e-15 77.4
MS.gene014546.t1 AT2G46480 27.363 201 135 7 143 342 344 534 6.81e-15 75.9
MS.gene014546.t1 AT2G46480 27.363 201 135 7 143 342 357 547 7.46e-15 75.9
MS.gene014546.t1 AT2G20810 31.818 198 125 6 143 340 342 529 1.10e-14 75.5
MS.gene014546.t1 AT3G02350 28.272 191 128 5 143 333 365 546 2.98e-13 71.2

Find 89 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGCGTTACAATATTC+AGG 0.247981 3.3:+92163666 None:intergenic
TTTGGGGAATTGTAGAATTC+AGG 0.255717 3.3:+92164122 None:intergenic
TGCTAGTAGGCCTTGTCCTT+TGG 0.308844 3.3:-92163280 MS.gene014546:CDS
GGTCAAGAATCAAAAGAAAA+TGG 0.326719 3.3:+92163222 None:intergenic
GAGGATGAGAATCTATGAAT+TGG 0.329118 3.3:-92163478 MS.gene014546:CDS
TCGGTAATGGAAGGGCATTT+TGG 0.345746 3.3:+92164104 None:intergenic
TGGAGTTTGTAATAGATCAT+AGG 0.349864 3.3:+92163242 None:intergenic
TTGTCCTTTGGATGCACTCT+GGG 0.351159 3.3:-92163268 MS.gene014546:CDS
CTTGTCCTTTGGATGCACTC+TGG 0.356944 3.3:-92163269 MS.gene014546:CDS
ACGGAAAGTGGTAAGAGATT+TGG 0.363144 3.3:+92163786 None:intergenic
GTGAATAGAAATGCTGGTTT+TGG 0.387812 3.3:+92164215 None:intergenic
AGGTAAACCTTGGGTTAGAT+TGG 0.391202 3.3:-92163304 MS.gene014546:CDS
ACGGTAACAAGAAGAATAAT+AGG 0.398687 3.3:+92164183 None:intergenic
AAGATAAACAACACGGTTAA+CGG 0.410562 3.3:+92163767 None:intergenic
TGTCGAGTGTCATTGCTACT+TGG 0.413805 3.3:+92164057 None:intergenic
TGGTGTGATGGTGATTGATT+TGG 0.415675 3.3:-92163559 MS.gene014546:CDS
ATATTGCTCCGGTGGATCAT+AGG 0.416962 3.3:-92163419 MS.gene014546:CDS
GGGTTAGATTGGATGCTAGT+AGG 0.429415 3.3:-92163293 MS.gene014546:CDS
TATGATTGCGGCGCGTAGAT+TGG 0.429472 3.3:+92163932 None:intergenic
ATTTGGAACGATGGAGAGAA+GGG 0.431109 3.3:-92163542 MS.gene014546:CDS
GTCCTGTGAGTTTATTGCAT+TGG 0.436349 3.3:-92163335 MS.gene014546:CDS
AGGTGTAGAGATGGAATTTG+AGG 0.450425 3.3:+92163895 None:intergenic
ATCCACCGGAGCAATATTCC+CGG 0.454348 3.3:+92163425 None:intergenic
AGAGATGGAATTTGAGGTAG+GGG 0.460127 3.3:+92163901 None:intergenic
TTGGGGAATTGTAGAATTCA+GGG 0.471079 3.3:+92164123 None:intergenic
TGCAATAAACTCACAGGACC+GGG 0.478583 3.3:+92163339 None:intergenic
GCGTAGATTGGACGCGTTTG+AGG 0.479876 3.3:+92163944 None:intergenic
ACAATCGAGAGCGGAACGAA+TGG 0.481470 3.3:+92163836 None:intergenic
GAATTTGAGGTAGGGGAAGG+AGG 0.485363 3.3:+92163908 None:intergenic
AGGATGAGAATCTATGAATT+GGG 0.485666 3.3:-92163477 MS.gene014546:CDS
ATGGAATTTGAGGTAGGGGA+AGG 0.490148 3.3:+92163905 None:intergenic
ATTGGATGGAGTTGCAGAAG+AGG 0.491391 3.3:-92163497 MS.gene014546:CDS
TTCTTTGAATTGATGTGTGA+TGG 0.492513 3.3:+92164148 None:intergenic
GATTTGGAACGATGGAGAGA+AGG 0.499211 3.3:-92163543 MS.gene014546:CDS
TTTGTGGACATGATGAATGT+TGG 0.500526 3.3:+92163991 None:intergenic
GGATTATACTGCAAAGATTG+AGG 0.501023 3.3:-92163520 MS.gene014546:CDS
GTAGAGATGGAATTTGAGGT+AGG 0.502782 3.3:+92163899 None:intergenic
GGAGTTTGTAATAGATCATA+GGG 0.510024 3.3:+92163243 None:intergenic
GTGTCATTGCTACTTGGACT+TGG 0.513792 3.3:+92164063 None:intergenic
AGAACTGTGAATAGAAATGC+TGG 0.520009 3.3:+92164209 None:intergenic
TTATTGCATTGGAGTGGGAA+AGG 0.522940 3.3:-92163324 MS.gene014546:CDS
TGCAAAGATTGAGGATTGGA+TGG 0.525594 3.3:-92163511 MS.gene014546:CDS
GAGTGGGAAAGGTAAACCTT+GGG 0.526873 3.3:-92163313 MS.gene014546:CDS
ACAACACGGTTAACGGAAAG+TGG 0.532001 3.3:+92163774 None:intergenic
TTTGAAGTGTCGGTAATGGA+AGG 0.535342 3.3:+92164095 None:intergenic
GATTGATAAGATTGCTGCCA+TGG 0.540752 3.3:+92164016 None:intergenic
ATGCAATAAACTCACAGGAC+CGG 0.546673 3.3:+92163338 None:intergenic
GGAGTGGGAAAGGTAAACCT+TGG 0.549229 3.3:-92163314 MS.gene014546:CDS
ATCGAGAGCGGAACGAATGG+AGG 0.549641 3.3:+92163839 None:intergenic
AACATACATCCGAGGATCCA+TGG 0.555402 3.3:-92164033 MS.gene014546:CDS
GTGGACATGATGAATGTTGG+AGG 0.556533 3.3:+92163994 None:intergenic
TAGAGATGGAATTTGAGGTA+GGG 0.559827 3.3:+92163900 None:intergenic
TGCCGGGAATATTGCTCCGG+TGG 0.560558 3.3:-92163427 MS.gene014546:CDS
AGATTGCTGCCATGGATCCT+CGG 0.563959 3.3:+92164024 None:intergenic
TGTCATCAAAGGTGTAGAGA+TGG 0.565154 3.3:+92163886 None:intergenic
AAATTAGCAGAAACACCGTT+AGG 0.570033 3.3:-92163711 MS.gene014546:CDS
TTTGATGACACAACAGTCAC+CGG 0.571428 3.3:-92163873 MS.gene014546:CDS
GCGAAAGTAAGAGACAAAGA+AGG 0.574335 3.3:+92163609 None:intergenic
AGGTGGAATCAACATGGACT+TGG 0.575288 3.3:-92163399 MS.gene014546:CDS
ATACTGCAAAGATTGAGGAT+TGG 0.577186 3.3:-92163515 MS.gene014546:CDS
AATGGAGGTTGAGATGAGTC+CGG 0.579533 3.3:+92163854 None:intergenic
CTCCAATGCAATAAACTCAC+AGG 0.589994 3.3:+92163333 None:intergenic
AAGCCATGTTATTTCAACAC+TGG 0.592304 3.3:-92163579 MS.gene014546:CDS
CTTTGTAGAAATCTTCATCC+CGG 0.594004 3.3:-92163357 MS.gene014546:CDS
TGGAATCAACATGGACTTGG+TGG 0.600755 3.3:-92163396 MS.gene014546:CDS
CAGAGTGCATCCAAAGGACA+AGG 0.602258 3.3:+92163270 None:intergenic
TGAGTTTATTGCATTGGAGT+GGG 0.602915 3.3:-92163329 MS.gene014546:CDS
GTGAGTTTATTGCATTGGAG+TGG 0.603412 3.3:-92163330 MS.gene014546:CDS
TGATTCCACCTATGATCCAC+CGG 0.603497 3.3:+92163411 None:intergenic
TTGAAGTGTCGGTAATGGAA+GGG 0.609241 3.3:+92164096 None:intergenic
TTTGGAACGATGGAGAGAAG+GGG 0.611636 3.3:-92163541 MS.gene014546:CDS
TAGCTACGAGCGTAGTTGAG+AGG 0.614608 3.3:+92163813 None:intergenic
TTGCTCCGGTGGATCATAGG+TGG 0.620003 3.3:-92163416 MS.gene014546:CDS
TGGGGAATTGTAGAATTCAG+GGG 0.620014 3.3:+92164124 None:intergenic
GGTGACTGTTGTGTCATCAA+AGG 0.626334 3.3:+92163875 None:intergenic
TTATTTCAACACTGGTGTGA+TGG 0.626622 3.3:-92163571 MS.gene014546:CDS
TGGTGATTGATTTGGAACGA+TGG 0.637244 3.3:-92163551 MS.gene014546:CDS
ACACCAGTGTTGAAATAACA+TGG 0.638418 3.3:+92163576 None:intergenic
GGGGAAGGAGGTTATGATTG+CGG 0.641133 3.3:+92163920 None:intergenic
CTAGCATCCAATCTAACCCA+AGG 0.642431 3.3:+92163297 None:intergenic
GATCATAGGTGGAATCAACA+TGG 0.645694 3.3:-92163405 MS.gene014546:CDS
CTTGGTGGTGATAATTTCCG+TGG 0.663363 3.3:-92163381 MS.gene014546:CDS
CGTTTGAGGAACAAACGAAG+TGG 0.674425 3.3:+92163958 None:intergenic
GGTGCCCAGAGTGCATCCAA+AGG 0.675740 3.3:+92163264 None:intergenic
GAAGATTTCTACAAAGACCA+CGG 0.676591 3.3:+92163364 None:intergenic
CTCGACACAACATACATCCG+AGG 0.680109 3.3:-92164041 MS.gene014546:CDS
GTTGAGAGGACAATCGAGAG+CGG 0.698957 3.3:+92163827 None:intergenic
CTGAATCAAGATAAACAACA+CGG 0.700753 3.3:+92163760 None:intergenic
GTGATGGTAGATGATAGACA+CGG 0.852270 3.3:+92164164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATTTGCGTTACAATATTC+AGG + chr3.3:92163797-92163816 None:intergenic 25.0%
!!! CTTATTTTACTCAATCGTTT+TGG - chr3.3:92163822-92163841 MS.gene014546:CDS 25.0%
AAGATAAACAACACGGTTAA+CGG + chr3.3:92163696-92163715 None:intergenic 30.0%
ACGGTAACAAGAAGAATAAT+AGG + chr3.3:92163280-92163299 None:intergenic 30.0%
AGGATGAGAATCTATGAATT+GGG - chr3.3:92163983-92164002 MS.gene014546:CDS 30.0%
CTGAATCAAGATAAACAACA+CGG + chr3.3:92163703-92163722 None:intergenic 30.0%
GGAGTTTGTAATAGATCATA+GGG + chr3.3:92164220-92164239 None:intergenic 30.0%
TGGAGTTTGTAATAGATCAT+AGG + chr3.3:92164221-92164240 None:intergenic 30.0%
TTCTTTGAATTGATGTGTGA+TGG + chr3.3:92163315-92163334 None:intergenic 30.0%
! AAAACAGAGTTTTCTCCTAA+CGG + chr3.3:92163767-92163786 None:intergenic 30.0%
! AAGTGGAAGAATATGTTTTG+TGG + chr3.3:92163488-92163507 None:intergenic 30.0%
AAATTAGCAGAAACACCGTT+AGG - chr3.3:92163749-92163768 MS.gene014546:CDS 35.0%
AGAACTGTGAATAGAAATGC+TGG + chr3.3:92163254-92163273 None:intergenic 35.0%
ATACTGCAAAGATTGAGGAT+TGG - chr3.3:92163945-92163964 MS.gene014546:CDS 35.0%
CTTTGTAGAAATCTTCATCC+CGG - chr3.3:92164103-92164122 MS.gene014546:CDS 35.0%
GAAGATTTCTACAAAGACCA+CGG + chr3.3:92164099-92164118 None:intergenic 35.0%
GAGGATGAGAATCTATGAAT+TGG - chr3.3:92163982-92164001 MS.gene014546:CDS 35.0%
GGATTATACTGCAAAGATTG+AGG - chr3.3:92163940-92163959 MS.gene014546:CDS 35.0%
TGAGTTTATTGCATTGGAGT+GGG - chr3.3:92164131-92164150 MS.gene014546:CDS 35.0%
TTATTTCAACACTGGTGTGA+TGG - chr3.3:92163889-92163908 MS.gene014546:CDS 35.0%
TTGGGGAATTGTAGAATTCA+GGG + chr3.3:92163340-92163359 None:intergenic 35.0%
TTTGGGGAATTGTAGAATTC+AGG + chr3.3:92163341-92163360 None:intergenic 35.0%
TTTGTGGACATGATGAATGT+TGG + chr3.3:92163472-92163491 None:intergenic 35.0%
! ACACCAGTGTTGAAATAACA+TGG + chr3.3:92163887-92163906 None:intergenic 35.0%
! TAGAGATGGAATTTGAGGTA+GGG + chr3.3:92163563-92163582 None:intergenic 35.0%
!! AAGCCATGTTATTTCAACAC+TGG - chr3.3:92163881-92163900 MS.gene014546:CDS 35.0%
!!! AATAGAAATGCTGGTTTTGG+TGG + chr3.3:92163245-92163264 None:intergenic 35.0%
!!! GACTGTTGATTTTGAAGTGT+CGG + chr3.3:92163378-92163397 None:intergenic 35.0%
!!! GTGAATAGAAATGCTGGTTT+TGG + chr3.3:92163248-92163267 None:intergenic 35.0%
!!! TGATTTTGAAGTGTCGGTAA+TGG + chr3.3:92163372-92163391 None:intergenic 35.0%
ACGGAAAGTGGTAAGAGATT+TGG + chr3.3:92163677-92163696 None:intergenic 40.0%
AGGTGTAGAGATGGAATTTG+AGG + chr3.3:92163568-92163587 None:intergenic 40.0%
ATGCAATAAACTCACAGGAC+CGG + chr3.3:92164125-92164144 None:intergenic 40.0%
CCGGCAAAAACAAGCAAAAA+CGG + chr3.3:92164019-92164038 None:intergenic 40.0%
CTCCAATGCAATAAACTCAC+AGG + chr3.3:92164130-92164149 None:intergenic 40.0%
GATCATAGGTGGAATCAACA+TGG - chr3.3:92164055-92164074 MS.gene014546:CDS 40.0%
GATTGATAAGATTGCTGCCA+TGG + chr3.3:92163447-92163466 None:intergenic 40.0%
GCAAAAACAAGCAAAAACGG+TGG + chr3.3:92164016-92164035 None:intergenic 40.0%
GCGAAAGTAAGAGACAAAGA+AGG + chr3.3:92163854-92163873 None:intergenic 40.0%
GTCCTGTGAGTTTATTGCAT+TGG - chr3.3:92164125-92164144 MS.gene014546:CDS 40.0%
GTGAGTTTATTGCATTGGAG+TGG - chr3.3:92164130-92164149 MS.gene014546:CDS 40.0%
GTGATGGTAGATGATAGACA+CGG + chr3.3:92163299-92163318 None:intergenic 40.0%
TGCAAAGATTGAGGATTGGA+TGG - chr3.3:92163949-92163968 MS.gene014546:CDS 40.0%
TGGGGAATTGTAGAATTCAG+GGG + chr3.3:92163339-92163358 None:intergenic 40.0%
TTATTGCATTGGAGTGGGAA+AGG - chr3.3:92164136-92164155 MS.gene014546:CDS 40.0%
! AGAGATGGAATTTGAGGTAG+GGG + chr3.3:92163562-92163581 None:intergenic 40.0%
! AGGTAAACCTTGGGTTAGAT+TGG - chr3.3:92164156-92164175 MS.gene014546:CDS 40.0%
! ATTTGGAACGATGGAGAGAA+GGG - chr3.3:92163918-92163937 MS.gene014546:CDS 40.0%
! GTAGAGATGGAATTTGAGGT+AGG + chr3.3:92163564-92163583 None:intergenic 40.0%
! TGGTGTGATGGTGATTGATT+TGG - chr3.3:92163901-92163920 MS.gene014546:CDS 40.0%
! TGTCATCAAAGGTGTAGAGA+TGG + chr3.3:92163577-92163596 None:intergenic 40.0%
! TTTGATGACACAACAGTCAC+CGG - chr3.3:92163587-92163606 MS.gene014546:CDS 40.0%
!! TGGTGATTGATTTGGAACGA+TGG - chr3.3:92163909-92163928 MS.gene014546:CDS 40.0%
!! TTGAAGTGTCGGTAATGGAA+GGG + chr3.3:92163367-92163386 None:intergenic 40.0%
!! TTTGAAGTGTCGGTAATGGA+AGG + chr3.3:92163368-92163387 None:intergenic 40.0%
!!! CCGTTTTTGCTTGTTTTTGC+CGG - chr3.3:92164016-92164035 MS.gene014546:CDS 40.0%
!!! CGTTTTTGCTTGTTTTTGCC+GGG - chr3.3:92164017-92164036 MS.gene014546:CDS 40.0%
AACATACATCCGAGGATCCA+TGG - chr3.3:92163427-92163446 MS.gene014546:CDS 45.0%
AATGGAGGTTGAGATGAGTC+CGG + chr3.3:92163609-92163628 None:intergenic 45.0%
ACAACACGGTTAACGGAAAG+TGG + chr3.3:92163689-92163708 None:intergenic 45.0%
AGGTGGAATCAACATGGACT+TGG - chr3.3:92164061-92164080 MS.gene014546:CDS 45.0%
ATATTGCTCCGGTGGATCAT+AGG - chr3.3:92164041-92164060 MS.gene014546:CDS 45.0%
ATTGGATGGAGTTGCAGAAG+AGG - chr3.3:92163963-92163982 MS.gene014546:CDS 45.0%
CGTTTGAGGAACAAACGAAG+TGG + chr3.3:92163505-92163524 None:intergenic 45.0%
CTAGCATCCAATCTAACCCA+AGG + chr3.3:92164166-92164185 None:intergenic 45.0%
GAGTGGGAAAGGTAAACCTT+GGG - chr3.3:92164147-92164166 MS.gene014546:CDS 45.0%
GGGTTAGATTGGATGCTAGT+AGG - chr3.3:92164167-92164186 MS.gene014546:CDS 45.0%
GGTGACTGTTGTGTCATCAA+AGG + chr3.3:92163588-92163607 None:intergenic 45.0%
GTGGACATGATGAATGTTGG+AGG + chr3.3:92163469-92163488 None:intergenic 45.0%
TGATTCCACCTATGATCCAC+CGG + chr3.3:92164052-92164071 None:intergenic 45.0%
TGCAATAAACTCACAGGACC+GGG + chr3.3:92164124-92164143 None:intergenic 45.0%
TGGAATCAACATGGACTTGG+TGG - chr3.3:92164064-92164083 MS.gene014546:CDS 45.0%
TTGTCCTTTGGATGCACTCT+GGG - chr3.3:92164192-92164211 MS.gene014546:CDS 45.0%
! ATGGAATTTGAGGTAGGGGA+AGG + chr3.3:92163558-92163577 None:intergenic 45.0%
! GATTTGGAACGATGGAGAGA+AGG - chr3.3:92163917-92163936 MS.gene014546:CDS 45.0%
! GTGTCATTGCTACTTGGACT+TGG + chr3.3:92163400-92163419 None:intergenic 45.0%
! TGTCGAGTGTCATTGCTACT+TGG + chr3.3:92163406-92163425 None:intergenic 45.0%
! TTTGGAACGATGGAGAGAAG+GGG - chr3.3:92163919-92163938 MS.gene014546:CDS 45.0%
! TTTTGCCGGGAATATTGCTC+CGG - chr3.3:92164030-92164049 MS.gene014546:CDS 45.0%
!! CTTGGTGGTGATAATTTCCG+TGG - chr3.3:92164079-92164098 MS.gene014546:CDS 45.0%
!!! CGGTAATGGAAGGGCATTTT+GGG + chr3.3:92163358-92163377 None:intergenic 45.0%
!!! GGTAATGGAAGGGCATTTTG+GGG + chr3.3:92163357-92163376 None:intergenic 45.0%
!!! TCGGTAATGGAAGGGCATTT+TGG + chr3.3:92163359-92163378 None:intergenic 45.0%
ACAATCGAGAGCGGAACGAA+TGG + chr3.3:92163627-92163646 None:intergenic 50.0%
AGATTGCTGCCATGGATCCT+CGG + chr3.3:92163439-92163458 None:intergenic 50.0%
ATCCACCGGAGCAATATTCC+CGG + chr3.3:92164038-92164057 None:intergenic 50.0%
CAGAGTGCATCCAAAGGACA+AGG + chr3.3:92164193-92164212 None:intergenic 50.0%
CTCGACACAACATACATCCG+AGG - chr3.3:92163419-92163438 MS.gene014546:CDS 50.0%
CTTGTCCTTTGGATGCACTC+TGG - chr3.3:92164191-92164210 MS.gene014546:CDS 50.0%
GGAGTGGGAAAGGTAAACCT+TGG - chr3.3:92164146-92164165 MS.gene014546:CDS 50.0%
GGGGAAGGAGGTTATGATTG+CGG + chr3.3:92163543-92163562 None:intergenic 50.0%
GTTGAGAGGACAATCGAGAG+CGG + chr3.3:92163636-92163655 None:intergenic 50.0%
TAGCTACGAGCGTAGTTGAG+AGG + chr3.3:92163650-92163669 None:intergenic 50.0%
TATGATTGCGGCGCGTAGAT+TGG + chr3.3:92163531-92163550 None:intergenic 50.0%
! GAATTTGAGGTAGGGGAAGG+AGG + chr3.3:92163555-92163574 None:intergenic 50.0%
! TGCTAGTAGGCCTTGTCCTT+TGG - chr3.3:92164180-92164199 MS.gene014546:CDS 50.0%
ATCGAGAGCGGAACGAATGG+AGG + chr3.3:92163624-92163643 None:intergenic 55.0%
GCGTAGATTGGACGCGTTTG+AGG + chr3.3:92163519-92163538 None:intergenic 55.0%
TTGCTCCGGTGGATCATAGG+TGG - chr3.3:92164044-92164063 MS.gene014546:CDS 55.0%
GGTGCCCAGAGTGCATCCAA+AGG + chr3.3:92164199-92164218 None:intergenic 60.0%
TGCCGGGAATATTGCTCCGG+TGG - chr3.3:92164033-92164052 MS.gene014546:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 92163224 92164258 92163224 ID=MS.gene014546
chr3.3 mRNA 92163224 92164258 92163224 ID=MS.gene014546.t1;Parent=MS.gene014546
chr3.3 exon 92163224 92164258 92163224 ID=MS.gene014546.t1.exon1;Parent=MS.gene014546.t1
chr3.3 CDS 92163224 92164258 92163224 ID=cds.MS.gene014546.t1;Parent=MS.gene014546.t1
Gene Sequence

>MS.gene014546

ATGCAATCTAAATCAAAACCACCAAAACCAGCATTTCTATTCACAGTTCTAATCCTATTATTCTTCTTGTTACCGTGTCTATCATCTACCATCACACATCAATTCAAAGAAGCCCCTGAATTCTACAATTCCCCAAAATGCCCTTCCATTACCGACACTTCAAAATCAACAGTCCAAGTCCAAGTAGCAATGACACTCGACACAACATACATCCGAGGATCCATGGCAGCAATCTTATCAATCCTCCAACATTCATCATGTCCACAAAACATATTCTTCCACTTCGTTTGTTCCTCAAACGCGTCCAATCTACGCGCCGCAATCATAACCTCCTTCCCCTACCTCAAATTCCATCTCTACACCTTTGATGACACAACAGTCACCGGACTCATCTCAACCTCCATTCGTTCCGCTCTCGATTGTCCTCTCAACTACGCTCGTAGCTACTTACCAAATCTCTTACCACTTTCCGTTAACCGTGTTGTTTATCTTGATTCAGATCTTATTCTTGTTGATGACATTGCAAAATTAGCAGAAACACCGTTAGGAGAAAACTCTGTTTTAGCAGCACCTGAATATTGTAACGCAAATTTCAGTTCTTATTTTACTCAATCGTTTTGGTCTAATCCTTCTTTGTCTCTTACTTTCGCAAATCGAAAGCCATGTTATTTCAACACTGGTGTGATGGTGATTGATTTGGAACGATGGAGAGAAGGGGATTATACTGCAAAGATTGAGGATTGGATGGAGTTGCAGAAGAGGATGAGAATCTATGAATTGGGTTCGTTGCCACCGTTTTTGCTTGTTTTTGCCGGGAATATTGCTCCGGTGGATCATAGGTGGAATCAACATGGACTTGGTGGTGATAATTTCCGTGGTCTTTGTAGAAATCTTCATCCCGGTCCTGTGAGTTTATTGCATTGGAGTGGGAAAGGTAAACCTTGGGTTAGATTGGATGCTAGTAGGCCTTGTCCTTTGGATGCACTCTGGGCACCCTATGATCTATTACAAACTCCATTTTCTTTTGATTCTTGA
Protein sequence

>MS.gene014546.t1

MQSKSKPPKPAFLFTVLILLFFLLPCLSSTITHQFKEAPEFYNSPKCPSITDTSKSTVQVQVAMTLDTTYIRGSMAAILSILQHSSCPQNIFFHFVCSSNASNLRAAIITSFPYLKFHLYTFDDTTVTGLISTSIRSALDCPLNYARSYLPNLLPLSVNRVVYLDSDLILVDDIAKLAETPLGENSVLAAPEYCNANFSSYFTQSFWSNPSLSLTFANRKPCYFNTGVMVIDLERWREGDYTAKIEDWMELQKRMRIYELGSLPPFLLVFAGNIAPVDHRWNQHGLGGDNFRGLCRNLHPGPVSLLHWSGKGKPWVRLDASRPCPLDALWAPYDLLQTPFSFDS