AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041483

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041483.t1 MTR_4g118030 98.559 347 5 0 1 347 1 347 0.0 714
MS.gene041483.t1 MTR_7g094230 74.837 306 73 2 42 347 51 352 1.26e-174 489
MS.gene041483.t1 MTR_1g089820 73.065 323 83 2 25 347 37 355 3.56e-171 480
MS.gene041483.t1 MTR_3g092310 61.424 337 120 4 8 341 6 335 5.55e-155 439
MS.gene041483.t1 MTR_7g109210 54.651 344 144 5 10 344 17 357 2.86e-137 394
MS.gene041483.t1 MTR_5g036580 54.571 361 134 6 10 344 9 365 7.98e-137 394
MS.gene041483.t1 MTR_1g021855 58.044 317 114 4 42 340 46 361 6.56e-133 384
MS.gene041483.t1 MTR_3g111600 61.429 280 106 2 66 344 1 279 3.19e-130 374
MS.gene041483.t1 MTR_8g078240 56.090 312 123 4 42 340 29 339 9.77e-130 375
MS.gene041483.t1 MTR_5g019220 54.434 327 121 4 41 340 36 361 4.13e-127 369
MS.gene041483.t1 MTR_6g008900 53.651 315 127 5 42 338 47 360 6.55e-126 366
MS.gene041483.t1 MTR_4g071620 53.651 315 127 5 42 338 47 360 6.55e-126 366
MS.gene041483.t1 MTR_4g133570 30.729 192 122 5 135 320 251 437 5.18e-25 105
MS.gene041483.t1 MTR_7g012370 31.694 183 108 6 145 318 334 508 1.65e-24 104
MS.gene041483.t1 MTR_2g082650 29.255 188 110 6 145 320 209 385 6.13e-24 102
MS.gene041483.t1 MTR_4g109890 32.768 177 111 5 145 320 340 509 1.21e-23 102
MS.gene041483.t1 MTR_2g082650 29.255 188 110 6 145 320 338 514 1.50e-23 101
MS.gene041483.t1 MTR_6g016380 30.890 191 123 5 145 335 359 540 3.33e-23 100
MS.gene041483.t1 MTR_2g461670 31.073 177 114 5 145 320 395 564 5.37e-23 100
MS.gene041483.t1 MTR_7g055600 32.124 193 118 6 145 335 238 419 6.27e-23 99.4
MS.gene041483.t1 MTR_7g057530 32.124 193 118 6 145 335 238 419 6.27e-23 99.4
MS.gene041483.t1 MTR_3g452360 29.319 191 109 7 145 320 175 354 3.58e-22 96.7
MS.gene041483.t1 MTR_3g452360 29.319 191 109 7 145 320 324 503 6.35e-22 97.1
MS.gene041483.t1 MTR_8g092000 30.508 177 115 5 145 320 384 553 1.77e-21 95.9
MS.gene041483.t1 MTR_2g027740 31.073 177 114 5 145 320 471 640 2.10e-21 95.9
MS.gene041483.t1 MTR_2g015550 27.839 273 157 10 62 331 285 520 3.63e-21 94.7
MS.gene041483.t1 MTR_7g075840 26.482 253 151 7 69 320 419 637 1.57e-19 90.1
MS.gene041483.t1 MTR_8g033360 27.193 228 138 6 62 289 379 578 3.64e-19 89.0
MS.gene041483.t1 MTR_3g107930 24.710 259 164 7 62 320 334 561 8.11e-19 87.8
MS.gene041483.t1 MTR_3g107930 24.710 259 164 7 62 320 411 638 1.04e-18 87.8
MS.gene041483.t1 MTR_6g013840 32.418 182 112 5 145 320 329 505 5.78e-18 85.1
MS.gene041483.t1 MTR_7g096160 29.213 178 115 6 145 318 455 625 9.01e-16 79.0
MS.gene041483.t1 MTR_2g006790 29.032 217 118 9 119 331 312 496 1.16e-13 72.0
MS.gene041483.t1 MTR_7g012370 32.432 111 68 3 145 250 334 442 5.39e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041483.t1 AT3G06260 76.923 325 71 4 26 347 28 351 0.0 533
MS.gene041483.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene041483.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene041483.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene041483.t1 AT1G13250 62.154 325 112 3 27 341 16 339 3.53e-141 404
MS.gene041483.t1 AT1G70090 60.252 317 109 4 38 338 47 362 3.36e-140 403
MS.gene041483.t1 AT1G70090 60.252 317 109 4 38 338 47 362 3.36e-140 403
MS.gene041483.t1 AT1G24170 54.795 365 128 7 8 339 6 366 4.43e-140 403
MS.gene041483.t1 AT3G62660 56.395 344 132 5 10 338 16 356 3.49e-138 397
MS.gene041483.t1 AT1G02720 58.599 314 121 3 36 341 48 360 2.46e-137 395
MS.gene041483.t1 AT1G02720 58.599 314 121 3 36 341 48 360 2.46e-137 395
MS.gene041483.t1 AT3G28340 55.901 322 128 4 36 346 39 357 9.49e-137 393
MS.gene041483.t1 AT3G50760 56.604 318 125 4 42 347 25 341 3.13e-129 373
MS.gene041483.t1 AT1G19300 58.176 318 113 4 42 340 29 345 8.94e-126 365
MS.gene041483.t1 AT3G01040 31.868 182 113 5 145 320 296 472 2.10e-26 109
MS.gene041483.t1 AT3G01040 31.868 182 113 5 145 320 329 505 3.04e-26 109
MS.gene041483.t1 AT3G01040 31.868 182 113 5 145 320 329 505 3.04e-26 109
MS.gene041483.t1 AT5G15470 32.973 185 107 6 145 320 329 505 2.89e-25 107
MS.gene041483.t1 AT3G25140 32.828 198 117 7 145 337 363 549 1.86e-24 104
MS.gene041483.t1 AT5G54690 30.556 180 114 5 145 318 331 505 2.59e-24 103
MS.gene041483.t1 AT1G18580 32.203 177 112 5 145 320 342 511 5.79e-24 103
MS.gene041483.t1 AT5G47780 32.386 176 113 5 145 320 420 589 6.97e-24 103
MS.gene041483.t1 AT4G38270 32.961 179 108 5 145 320 484 653 2.08e-22 99.0
MS.gene041483.t1 AT4G38270 32.961 179 108 5 145 320 480 649 2.29e-22 98.6
MS.gene041483.t1 AT3G58790 30.000 200 121 8 145 335 204 393 5.12e-21 93.6
MS.gene041483.t1 AT3G58790 30.000 200 121 8 145 335 336 525 6.30e-21 94.4
MS.gene041483.t1 AT1G06780 33.333 177 109 5 145 318 403 573 3.40e-20 92.0
MS.gene041483.t1 AT1G06780 33.333 177 109 5 145 318 390 560 4.16e-20 92.0
MS.gene041483.t1 AT3G61130 29.379 177 117 5 145 320 477 646 3.80e-19 89.0
MS.gene041483.t1 AT2G30575 31.844 179 113 6 145 320 411 583 1.53e-18 87.0
MS.gene041483.t1 AT3G02350 29.319 191 126 5 145 335 365 546 1.34e-17 84.3
MS.gene041483.t1 AT2G46480 25.940 266 160 9 62 324 286 517 2.10e-16 80.5
MS.gene041483.t1 AT2G46480 25.954 262 157 9 62 320 299 526 2.90e-16 80.1
MS.gene041483.t1 AT2G20810 29.091 275 150 11 69 340 295 527 1.24e-15 78.2

Find 95 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTTCACAAAACAATTT+TGG 0.231657 8.2:+11612544 MS.gene041483:CDS
CTCCAATGCAATAAACTAAT+TGG 0.232412 8.2:-11612852 None:intergenic
CATGCATTGTGGACCATCTA+TGG 0.254614 8.2:+11612916 MS.gene041483:CDS
ATCCAAGAGGATATATCATT+TGG 0.280778 8.2:+11612707 MS.gene041483:CDS
TTTAAGACAGGATGGTCTTC+AGG 0.316583 8.2:+11611932 None:intergenic
TTTATGCTTGTGAATAGTTC+AGG 0.327122 8.2:-11612252 None:intergenic
TGGTGATGGATGTGGATAAA+TGG 0.329278 8.2:+11612631 MS.gene041483:CDS
AGATGGAACCAACATGGTTT+AGG 0.357389 8.2:+11612786 MS.gene041483:CDS
AAATCTGTATGACAATATTC+TGG 0.369299 8.2:-11612516 None:intergenic
CTTGATGTTAATTACCTTCG+TGG 0.380377 8.2:+11612144 MS.gene041483:CDS
TTAAAGCAGTTGATCATAGA+TGG 0.380750 8.2:+11612769 MS.gene041483:CDS
TAATGGGGTGGAGGAAGGAC+AGG 0.388988 8.2:-11611993 None:intergenic
GTTCTCGCAAAGACGTTTGA+TGG 0.395785 8.2:+11612576 MS.gene041483:CDS
TCCTCGCCGTTCCGGAAAGC+GGG 0.396369 8.2:-11612078 None:intergenic
CATGGTTGAGGTTGGATTCA+AGG 0.396771 8.2:+11612889 MS.gene041483:CDS
AGCCACATTCCTCGCCGTTC+CGG 0.410897 8.2:-11612086 None:intergenic
GTCCAATTAGTTTATTGCAT+TGG 0.412346 8.2:+11612850 MS.gene041483:CDS
TTGATGATATAGCTAAGCTT+TGG 0.412649 8.2:+11612460 MS.gene041483:CDS
TTTAATTCTGATCGTGTTCG+CGG 0.414607 8.2:+11612312 MS.gene041483:CDS
CGTGTAGTTGTCATACTCCT+TGG 0.415246 8.2:+11611967 MS.gene041483:CDS
TCAAACGTCTTTGCGAGAAC+CGG 0.418289 8.2:-11612573 None:intergenic
CCAAGACGGATAGAGGTAAT+GGG 0.421902 8.2:-11612009 None:intergenic
TGATGATATAGCTAAGCTTT+GGG 0.428107 8.2:+11612461 MS.gene041483:CDS
GGAGGAAGGACAGGAGGCCA+AGG 0.431784 8.2:-11611984 None:intergenic
GGGCTCCTTACGATTTGTAT+AGG 0.441558 8.2:+11612937 MS.gene041483:CDS
AGAGGTAATGGGGTGGAGGA+AGG 0.442243 8.2:-11611998 None:intergenic
GCCAAGACGGATAGAGGTAA+TGG 0.446240 8.2:-11612010 None:intergenic
ATGAGCAGAAAGGAAGTAGA+AGG 0.446739 8.2:-11612223 None:intergenic
TTATTTCAACACAGGTGTAA+TGG 0.450858 8.2:+11612611 MS.gene041483:CDS
TTATTGCATTGGAGTGGAAA+AGG 0.458081 8.2:+11612861 MS.gene041483:CDS
CAGAAGAGGGTAGGCGGACA+AGG 0.465642 8.2:-11612032 None:intergenic
TCCAAGAGGATATATCATTT+GGG 0.465682 8.2:+11612708 MS.gene041483:CDS
GGATAGAGGTAATGGGGTGG+AGG 0.471735 8.2:-11612002 None:intergenic
AATCGTAAGGAGCCCATAGA+TGG 0.474933 8.2:-11612929 None:intergenic
AAATCGTCATGTTTAGATAA+GGG 0.479874 8.2:-11612284 None:intergenic
CACGAAGGTAATTAACATCA+AGG 0.480331 8.2:-11612143 None:intergenic
GACAAGGCCAAGACGGATAG+AGG 0.483676 8.2:-11612016 None:intergenic
CCCATTACCTCTATCCGTCT+TGG 0.486806 8.2:+11612009 MS.gene041483:CDS
ATACAGAGAAAGTTGAAGAA+TGG 0.487108 8.2:+11612667 MS.gene041483:CDS
TAAATCGTCATGTTTAGATA+AGG 0.495139 8.2:-11612285 None:intergenic
AAAGTCAATTAGAAAAGCAT+TGG 0.497024 8.2:+11612344 MS.gene041483:CDS
TTCCTCGCCGTTCCGGAAAG+CGG 0.498683 8.2:-11612079 None:intergenic
ACCCAAATGATATATCCTCT+TGG 0.500116 8.2:-11612709 None:intergenic
TATATCCTTGCATAATTCAA+AGG 0.509392 8.2:-11612372 None:intergenic
TGCAATAAACTAATTGGACC+AGG 0.513743 8.2:-11612846 None:intergenic
TTAGGTGGAGATAACATTGA+AGG 0.533787 8.2:+11612804 MS.gene041483:CDS
CATGGACAACACTGCAGCCA+TGG 0.535328 8.2:-11612169 None:intergenic
AGGTGTAATGGTGATGGATG+TGG 0.537826 8.2:+11612623 MS.gene041483:CDS
AGGTAAACCATGGTTGAGGT+TGG 0.540509 8.2:+11612881 MS.gene041483:CDS
CTTGAATCCAACCTCAACCA+TGG 0.544223 8.2:-11612888 None:intergenic
ATTAGTTTATTGCATTGGAG+TGG 0.546400 8.2:+11612855 MS.gene041483:CDS
TTCCGGAACGGCGAGGAATG+TGG 0.547862 8.2:+11612084 MS.gene041483:CDS
ATCAACCTTTGAATTATGCA+AGG 0.548743 8.2:+11612367 MS.gene041483:CDS
CAAACGTCTTTGCGAGAACC+GGG 0.553347 8.2:-11612572 None:intergenic
ATGCATTGTGGACCATCTAT+GGG 0.557021 8.2:+11612917 MS.gene041483:CDS
CCTCGCCGTTCCGGAAAGCG+GGG 0.557081 8.2:-11612077 None:intergenic
GTAATTAACATCAAGGGTCA+TGG 0.557438 8.2:-11612136 None:intergenic
TTTAGATTCTGACCTTGTTG+TGG 0.558089 8.2:+11612437 MS.gene041483:CDS
GGAGGTCAGAAGAGGGTAGG+CGG 0.560759 8.2:-11612038 None:intergenic
AGAGAAAGTTGAAGAATGGA+TGG 0.562628 8.2:+11612671 MS.gene041483:CDS
CGTCATGTTTAGATAAGGGA+AGG 0.565903 8.2:-11612280 None:intergenic
ATTTATACGATCAGCTTCTG+TGG 0.568749 8.2:-11612109 None:intergenic
CAGGAGCATCATGAGCAGAA+AGG 0.571515 8.2:-11612233 None:intergenic
CATAGATGGTCCACAATGCA+TGG 0.571731 8.2:-11612915 None:intergenic
AAGCCATGTTATTTCAACAC+AGG 0.579959 8.2:+11612603 MS.gene041483:CDS
CTCGCCGTTCCGGAAAGCGG+GGG 0.586591 8.2:-11612076 None:intergenic
GATGACCTATACAAATCGTA+AGG 0.587720 8.2:-11612942 None:intergenic
ACACCTGTGTTGAAATAACA+TGG 0.589070 8.2:-11612606 None:intergenic
TGGAACCAACATGGTTTAGG+TGG 0.594893 8.2:+11612789 MS.gene041483:CDS
CTTTGGGGTGTAGACATGGA+AGG 0.596287 8.2:+11612477 MS.gene041483:CDS
TGGGGTGGAGGAAGGACAGG+AGG 0.599559 8.2:-11611990 None:intergenic
GAGGGAGGTCAGAAGAGGGT+AGG 0.601209 8.2:-11612041 None:intergenic
TTCAAGGAAGCCATGCATTG+TGG 0.601269 8.2:+11612905 MS.gene041483:CDS
CAACACAGGTGTAATGGTGA+TGG 0.613711 8.2:+11612617 MS.gene041483:CDS
TAAGCTTTGGGGTGTAGACA+TGG 0.613816 8.2:+11612473 MS.gene041483:CDS
TAATTACCTTCGTGGAACCA+TGG 0.617230 8.2:+11612152 MS.gene041483:CDS
TTTGGGGTGTAGACATGGAA+GGG 0.626150 8.2:+11612478 MS.gene041483:CDS
AAAAGAGGGAGGTCAGAAGA+GGG 0.626688 8.2:-11612045 None:intergenic
ACGAAGGTAATTAACATCAA+GGG 0.627230 8.2:-11612142 None:intergenic
TATCTCCACCTAAACCATGT+TGG 0.627381 8.2:-11612794 None:intergenic
GATGATATAGCTAAGCTTTG+GGG 0.638565 8.2:+11612462 MS.gene041483:CDS
GATCATAGATGGAACCAACA+TGG 0.640572 8.2:+11612780 MS.gene041483:CDS
GAAAAGGTAAACCATGGTTG+AGG 0.644192 8.2:+11612877 MS.gene041483:CDS
GTAGGCGGACAAGGCCAAGA+CGG 0.645210 8.2:-11612023 None:intergenic
ACATGTTGAATGTTGTAACA+TGG 0.656912 8.2:-11612187 None:intergenic
CCCCGCTTTCCGGAACGGCG+AGG 0.661029 8.2:+11612077 MS.gene041483:CDS
GACGGATAGAGGTAATGGGG+TGG 0.666414 8.2:-11612005 None:intergenic
GCAATAAACTAATTGGACCA+GGG 0.673769 8.2:-11612845 None:intergenic
CAAGACGGATAGAGGTAATG+GGG 0.681380 8.2:-11612008 None:intergenic
CTATATCATCAACCACAACA+AGG 0.685272 8.2:-11612449 None:intergenic
AGACATGGAAGGGAAAGTAG+TGG 0.686653 8.2:+11612488 MS.gene041483:CDS
GGAGTGGAAAAGGTAAACCA+TGG 0.689517 8.2:+11612871 MS.gene041483:CDS
AAATGTAGAAGCTTACACCC+TGG 0.716978 8.2:+11612828 MS.gene041483:CDS
CTGCAGCCATGGTTCCACGA+AGG 0.735508 8.2:-11612158 None:intergenic
CTGTACAAAAGAAATCCAAG+AGG 0.743316 8.2:+11612694 MS.gene041483:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTCACAAAACAATTT+TGG + chr8.2:11612544-11612563 MS.gene041483:CDS 20.0%
! AAATCGTCATGTTTAGATAA+GGG - chr8.2:11612287-11612306 None:intergenic 25.0%
! AAATCTGTATGACAATATTC+TGG - chr8.2:11612519-11612538 None:intergenic 25.0%
! TAAATCGTCATGTTTAGATA+AGG - chr8.2:11612288-11612307 None:intergenic 25.0%
! TATATCCTTGCATAATTCAA+AGG - chr8.2:11612375-11612394 None:intergenic 25.0%
!! AAAGTCAATTAGAAAAGCAT+TGG + chr8.2:11612344-11612363 MS.gene041483:CDS 25.0%
!!! TTATTCTTCAAAAAAGTGTC+TGG - chr8.2:11612967-11612986 None:intergenic 25.0%
!!! TTTCACAAAACAATTTTGGT+CGG + chr8.2:11612548-11612567 MS.gene041483:CDS 25.0%
ACATGTTGAATGTTGTAACA+TGG - chr8.2:11612190-11612209 None:intergenic 30.0%
ACGAAGGTAATTAACATCAA+GGG - chr8.2:11612145-11612164 None:intergenic 30.0%
ATACAGAGAAAGTTGAAGAA+TGG + chr8.2:11612667-11612686 MS.gene041483:CDS 30.0%
ATCAACCTTTGAATTATGCA+AGG + chr8.2:11612367-11612386 MS.gene041483:CDS 30.0%
ATCCAAGAGGATATATCATT+TGG + chr8.2:11612707-11612726 MS.gene041483:CDS 30.0%
CTCCAATGCAATAAACTAAT+TGG - chr8.2:11612855-11612874 None:intergenic 30.0%
TCCAAGAGGATATATCATTT+GGG + chr8.2:11612708-11612727 MS.gene041483:CDS 30.0%
TGATGATATAGCTAAGCTTT+GGG + chr8.2:11612461-11612480 MS.gene041483:CDS 30.0%
TTAAAGCAGTTGATCATAGA+TGG + chr8.2:11612769-11612788 MS.gene041483:CDS 30.0%
TTATTTCAACACAGGTGTAA+TGG + chr8.2:11612611-11612630 MS.gene041483:CDS 30.0%
TTTATGCTTGTGAATAGTTC+AGG - chr8.2:11612255-11612274 None:intergenic 30.0%
! ATTAGTTTATTGCATTGGAG+TGG + chr8.2:11612855-11612874 MS.gene041483:CDS 30.0%
! GTCCAATTAGTTTATTGCAT+TGG + chr8.2:11612850-11612869 MS.gene041483:CDS 30.0%
! TTGATGATATAGCTAAGCTT+TGG + chr8.2:11612460-11612479 MS.gene041483:CDS 30.0%
ACACCTGTGTTGAAATAACA+TGG - chr8.2:11612609-11612628 None:intergenic 35.0%
ACCCAAATGATATATCCTCT+TGG - chr8.2:11612712-11612731 None:intergenic 35.0%
AGAGAAAGTTGAAGAATGGA+TGG + chr8.2:11612671-11612690 MS.gene041483:CDS 35.0%
ATTTATACGATCAGCTTCTG+TGG - chr8.2:11612112-11612131 None:intergenic 35.0%
CACGAAGGTAATTAACATCA+AGG - chr8.2:11612146-11612165 None:intergenic 35.0%
CTATATCATCAACCACAACA+AGG - chr8.2:11612452-11612471 None:intergenic 35.0%
CTGTACAAAAGAAATCCAAG+AGG + chr8.2:11612694-11612713 MS.gene041483:CDS 35.0%
CTTGATGTTAATTACCTTCG+TGG + chr8.2:11612144-11612163 MS.gene041483:CDS 35.0%
GATGACCTATACAAATCGTA+AGG - chr8.2:11612945-11612964 None:intergenic 35.0%
GATGATATAGCTAAGCTTTG+GGG + chr8.2:11612462-11612481 MS.gene041483:CDS 35.0%
GCAATAAACTAATTGGACCA+GGG - chr8.2:11612848-11612867 None:intergenic 35.0%
GTAATTAACATCAAGGGTCA+TGG - chr8.2:11612139-11612158 None:intergenic 35.0%
TGCAATAAACTAATTGGACC+AGG - chr8.2:11612849-11612868 None:intergenic 35.0%
TTAGGTGGAGATAACATTGA+AGG + chr8.2:11612804-11612823 MS.gene041483:CDS 35.0%
TTATTGCATTGGAGTGGAAA+AGG + chr8.2:11612861-11612880 MS.gene041483:CDS 35.0%
TTTAATTCTGATCGTGTTCG+CGG + chr8.2:11612312-11612331 MS.gene041483:CDS 35.0%
TTTAGATTCTGACCTTGTTG+TGG + chr8.2:11612437-11612456 MS.gene041483:CDS 35.0%
! AAGTAGAAGGCAAGATTTTC+TGG - chr8.2:11612213-11612232 None:intergenic 35.0%
! ATCACACGTTGTACATTTTC+TGG - chr8.2:11612414-11612433 None:intergenic 35.0%
!! AAGCCATGTTATTTCAACAC+AGG + chr8.2:11612603-11612622 MS.gene041483:CDS 35.0%
!! TTCTCTTCCACCATTTTTGT+TGG + chr8.2:11612731-11612750 MS.gene041483:CDS 35.0%
!!! CATTTTTGTTGGTTTTGGCA+GGG + chr8.2:11612742-11612761 MS.gene041483:CDS 35.0%
!!! TCCACCATTTTTGTTGGTTT+TGG + chr8.2:11612737-11612756 MS.gene041483:CDS 35.0%
AAATGTAGAAGCTTACACCC+TGG + chr8.2:11612828-11612847 MS.gene041483:CDS 40.0%
AGATGGAACCAACATGGTTT+AGG + chr8.2:11612786-11612805 MS.gene041483:CDS 40.0%
ATGAGCAGAAAGGAAGTAGA+AGG - chr8.2:11612226-11612245 None:intergenic 40.0%
ATGCATTGTGGACCATCTAT+GGG + chr8.2:11612917-11612936 MS.gene041483:CDS 40.0%
CCTGCCAAAACCAACAAAAA+TGG - chr8.2:11612744-11612763 None:intergenic 40.0%
CGTCATGTTTAGATAAGGGA+AGG - chr8.2:11612283-11612302 None:intergenic 40.0%
GAAAAGGTAAACCATGGTTG+AGG + chr8.2:11612877-11612896 MS.gene041483:CDS 40.0%
GATCATAGATGGAACCAACA+TGG + chr8.2:11612780-11612799 MS.gene041483:CDS 40.0%
GCCAAAACCAACAAAAATGG+TGG - chr8.2:11612741-11612760 None:intergenic 40.0%
TAATTACCTTCGTGGAACCA+TGG + chr8.2:11612152-11612171 MS.gene041483:CDS 40.0%
TATCTCCACCTAAACCATGT+TGG - chr8.2:11612797-11612816 None:intergenic 40.0%
!! AAAACAATTTTGGTCGGACC+CGG + chr8.2:11612554-11612573 MS.gene041483:CDS 40.0%
!! TGGTGATGGATGTGGATAAA+TGG + chr8.2:11612631-11612650 MS.gene041483:CDS 40.0%
!!! CCATTTTTGTTGGTTTTGGC+AGG + chr8.2:11612741-11612760 MS.gene041483:CDS 40.0%
AAAAAGAGGGAGGTCAGAAG+AGG - chr8.2:11612049-11612068 None:intergenic 45.0%
AAAAGAGGGAGGTCAGAAGA+GGG - chr8.2:11612048-11612067 None:intergenic 45.0%
AATCGTAAGGAGCCCATAGA+TGG - chr8.2:11612932-11612951 None:intergenic 45.0%
AGACATGGAAGGGAAAGTAG+TGG + chr8.2:11612488-11612507 MS.gene041483:CDS 45.0%
AGGTAAACCATGGTTGAGGT+TGG + chr8.2:11612881-11612900 MS.gene041483:CDS 45.0%
CAACACAGGTGTAATGGTGA+TGG + chr8.2:11612617-11612636 MS.gene041483:CDS 45.0%
CAAGACGGATAGAGGTAATG+GGG - chr8.2:11612011-11612030 None:intergenic 45.0%
CATAGATGGTCCACAATGCA+TGG - chr8.2:11612918-11612937 None:intergenic 45.0%
CATGCATTGTGGACCATCTA+TGG + chr8.2:11612916-11612935 MS.gene041483:CDS 45.0%
CATGGTTGAGGTTGGATTCA+AGG + chr8.2:11612889-11612908 MS.gene041483:CDS 45.0%
CCAAGACGGATAGAGGTAAT+GGG - chr8.2:11612012-11612031 None:intergenic 45.0%
CGTGTAGTTGTCATACTCCT+TGG + chr8.2:11611967-11611986 MS.gene041483:CDS 45.0%
CTTGAATCCAACCTCAACCA+TGG - chr8.2:11612891-11612910 None:intergenic 45.0%
GGAGTGGAAAAGGTAAACCA+TGG + chr8.2:11612871-11612890 MS.gene041483:CDS 45.0%
GGGCTCCTTACGATTTGTAT+AGG + chr8.2:11612937-11612956 MS.gene041483:CDS 45.0%
GTTCTCGCAAAGACGTTTGA+TGG + chr8.2:11612576-11612595 MS.gene041483:CDS 45.0%
TCAAACGTCTTTGCGAGAAC+CGG - chr8.2:11612576-11612595 None:intergenic 45.0%
TGGAACCAACATGGTTTAGG+TGG + chr8.2:11612789-11612808 MS.gene041483:CDS 45.0%
TTCAAGGAAGCCATGCATTG+TGG + chr8.2:11612905-11612924 MS.gene041483:CDS 45.0%
! TTTGGGGTGTAGACATGGAA+GGG + chr8.2:11612478-11612497 MS.gene041483:CDS 45.0%
!! AGGTGTAATGGTGATGGATG+TGG + chr8.2:11612623-11612642 MS.gene041483:CDS 45.0%
!! TAAGCTTTGGGGTGTAGACA+TGG + chr8.2:11612473-11612492 MS.gene041483:CDS 45.0%
CAAACGTCTTTGCGAGAACC+GGG - chr8.2:11612575-11612594 None:intergenic 50.0%
CCCATTACCTCTATCCGTCT+TGG + chr8.2:11612009-11612028 MS.gene041483:CDS 50.0%
GCCAAGACGGATAGAGGTAA+TGG - chr8.2:11612013-11612032 None:intergenic 50.0%
!! CAGGAGCATCATGAGCAGAA+AGG - chr8.2:11612236-11612255 None:intergenic 50.0%
!! CTTTGGGGTGTAGACATGGA+AGG + chr8.2:11612477-11612496 MS.gene041483:CDS 50.0%
CATGGACAACACTGCAGCCA+TGG - chr8.2:11612172-11612191 None:intergenic 55.0%
CGGGGGCTTCACGAAAAAGA+GGG - chr8.2:11612062-11612081 None:intergenic 55.0%
GACAAGGCCAAGACGGATAG+AGG - chr8.2:11612019-11612038 None:intergenic 55.0%
GGGCTTCACGAAAAAGAGGG+AGG - chr8.2:11612059-11612078 None:intergenic 55.0%
TAATGGGGTGGAGGAAGGAC+AGG - chr8.2:11611996-11612015 None:intergenic 55.0%
!! AGAGGTAATGGGGTGGAGGA+AGG - chr8.2:11612001-11612020 None:intergenic 55.0%
!! GACGGATAGAGGTAATGGGG+TGG - chr8.2:11612008-11612027 None:intergenic 55.0%
!! GGATAGAGGTAATGGGGTGG+AGG - chr8.2:11612005-11612024 None:intergenic 55.0%
AGCCACATTCCTCGCCGTTC+CGG - chr8.2:11612089-11612108 None:intergenic 60.0%
CAGAAGAGGGTAGGCGGACA+AGG - chr8.2:11612035-11612054 None:intergenic 60.0%
CTGCAGCCATGGTTCCACGA+AGG - chr8.2:11612161-11612180 None:intergenic 60.0%
GAGGGAGGTCAGAAGAGGGT+AGG - chr8.2:11612044-11612063 None:intergenic 60.0%
GCGGGGGCTTCACGAAAAAG+AGG - chr8.2:11612063-11612082 None:intergenic 60.0%
GGAGGTCAGAAGAGGGTAGG+CGG - chr8.2:11612041-11612060 None:intergenic 60.0%
GTAGGCGGACAAGGCCAAGA+CGG - chr8.2:11612026-11612045 None:intergenic 60.0%
TTCCGGAACGGCGAGGAATG+TGG + chr8.2:11612084-11612103 MS.gene041483:CDS 60.0%
TTCCTCGCCGTTCCGGAAAG+CGG - chr8.2:11612082-11612101 None:intergenic 60.0%
TTCGTGAAGCCCCCGCTTTC+CGG + chr8.2:11612067-11612086 MS.gene041483:CDS 60.0%
GAAGCCCCCGCTTTCCGGAA+CGG + chr8.2:11612072-11612091 MS.gene041483:CDS 65.0%
GGAGGAAGGACAGGAGGCCA+AGG - chr8.2:11611987-11612006 None:intergenic 65.0%
TCCTCGCCGTTCCGGAAAGC+GGG - chr8.2:11612081-11612100 None:intergenic 65.0%
TGGGGTGGAGGAAGGACAGG+AGG - chr8.2:11611993-11612012 None:intergenic 65.0%
CCTCGCCGTTCCGGAAAGCG+GGG - chr8.2:11612080-11612099 None:intergenic 70.0%
CTCGCCGTTCCGGAAAGCGG+GGG - chr8.2:11612079-11612098 None:intergenic 70.0%
CCCCGCTTTCCGGAACGGCG+AGG + chr8.2:11612077-11612096 MS.gene041483:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 11611943 11612986 11611943 ID=MS.gene041483
chr8.2 mRNA 11611943 11612986 11611943 ID=MS.gene041483.t1;Parent=MS.gene041483
chr8.2 exon 11611943 11612986 11611943 ID=MS.gene041483.t1.exon1;Parent=MS.gene041483.t1
chr8.2 CDS 11611943 11612986 11611943 ID=cds.MS.gene041483.t1;Parent=MS.gene041483.t1
Gene Sequence

>MS.gene041483

ATGGTCTTCAGGAGTTTCAATTCTCGTGTAGTTGTCATACTCCTTGGCCTCCTGTCCTTCCTCCACCCCATTACCTCTATCCGTCTTGGCCTTGTCCGCCTACCCTCTTCTGACCTCCCTCTTTTTCGTGAAGCCCCCGCTTTCCGGAACGGCGAGGAATGTGGCTCCACAGAAGCTGATCGTATAAATGTTGCCATGACCCTTGATGTTAATTACCTTCGTGGAACCATGGCTGCAGTGTTGTCCATGTTACAACATTCAACATGTCCAGAAAATCTTGCCTTCTACTTCCTTTCTGCTCATGATGCTCCTGAACTATTCACAAGCATAAAATCAACCTTCCCTTATCTAAACATGACGATTTATCACTTTAATTCTGATCGTGTTCGCGGTAAGATATCAAAGTCAATTAGAAAAGCATTGGATCAACCTTTGAATTATGCAAGGATATATCTTGCAGATACAATACCAGAAAATGTACAACGTGTGATATATTTAGATTCTGACCTTGTTGTGGTTGATGATATAGCTAAGCTTTGGGGTGTAGACATGGAAGGGAAAGTAGTGGCTGCTCCAGAATATTGTCATACAGATTTCACATTGTATTTCACAAAACAATTTTGGTCGGACCCGGTTCTCGCAAAGACGTTTGATGGAAGAAAGCCATGTTATTTCAACACAGGTGTAATGGTGATGGATGTGGATAAATGGAGAAAAGAAAAATATACAGAGAAAGTTGAAGAATGGATGGCTGTACAAAAGAAATCCAAGAGGATATATCATTTGGGTTCTCTTCCACCATTTTTGTTGGTTTTGGCAGGGAATATTAAAGCAGTTGATCATAGATGGAACCAACATGGTTTAGGTGGAGATAACATTGAAGGTAAATGTAGAAGCTTACACCCTGGTCCAATTAGTTTATTGCATTGGAGTGGAAAAGGTAAACCATGGTTGAGGTTGGATTCAAGGAAGCCATGCATTGTGGACCATCTATGGGCTCCTTACGATTTGTATAGGTCATCCAGACACTTTTTTGAAGAATAA
Protein sequence

>MS.gene041483.t1

MVFRSFNSRVVVILLGLLSFLHPITSIRLGLVRLPSSDLPLFREAPAFRNGEECGSTEADRINVAMTLDVNYLRGTMAAVLSMLQHSTCPENLAFYFLSAHDAPELFTSIKSTFPYLNMTIYHFNSDRVRGKISKSIRKALDQPLNYARIYLADTIPENVQRVIYLDSDLVVVDDIAKLWGVDMEGKVVAAPEYCHTDFTLYFTKQFWSDPVLAKTFDGRKPCYFNTGVMVMDVDKWRKEKYTEKVEEWMAVQKKSKRIYHLGSLPPFLLVLAGNIKAVDHRWNQHGLGGDNIEGKCRSLHPGPISLLHWSGKGKPWLRLDSRKPCIVDHLWAPYDLYRSSRHFFEE