AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035252

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035252.t1 MTR_4g118030 98.559 347 5 0 1 347 1 347 0.0 714
MS.gene035252.t1 MTR_7g094230 74.837 306 73 2 42 347 51 352 1.26e-174 489
MS.gene035252.t1 MTR_1g089820 73.065 323 83 2 25 347 37 355 3.56e-171 480
MS.gene035252.t1 MTR_3g092310 61.424 337 120 4 8 341 6 335 5.55e-155 439
MS.gene035252.t1 MTR_7g109210 54.651 344 144 5 10 344 17 357 2.86e-137 394
MS.gene035252.t1 MTR_5g036580 54.571 361 134 6 10 344 9 365 7.98e-137 394
MS.gene035252.t1 MTR_1g021855 58.044 317 114 4 42 340 46 361 6.56e-133 384
MS.gene035252.t1 MTR_3g111600 61.429 280 106 2 66 344 1 279 3.19e-130 374
MS.gene035252.t1 MTR_8g078240 56.090 312 123 4 42 340 29 339 9.77e-130 375
MS.gene035252.t1 MTR_5g019220 54.434 327 121 4 41 340 36 361 4.13e-127 369
MS.gene035252.t1 MTR_6g008900 53.651 315 127 5 42 338 47 360 6.55e-126 366
MS.gene035252.t1 MTR_4g071620 53.651 315 127 5 42 338 47 360 6.55e-126 366
MS.gene035252.t1 MTR_4g133570 30.729 192 122 5 135 320 251 437 5.18e-25 105
MS.gene035252.t1 MTR_7g012370 31.694 183 108 6 145 318 334 508 1.65e-24 104
MS.gene035252.t1 MTR_2g082650 29.255 188 110 6 145 320 209 385 6.13e-24 102
MS.gene035252.t1 MTR_4g109890 32.768 177 111 5 145 320 340 509 1.21e-23 102
MS.gene035252.t1 MTR_2g082650 29.255 188 110 6 145 320 338 514 1.50e-23 101
MS.gene035252.t1 MTR_6g016380 30.890 191 123 5 145 335 359 540 3.33e-23 100
MS.gene035252.t1 MTR_2g461670 31.073 177 114 5 145 320 395 564 5.37e-23 100
MS.gene035252.t1 MTR_7g055600 32.124 193 118 6 145 335 238 419 6.27e-23 99.4
MS.gene035252.t1 MTR_7g057530 32.124 193 118 6 145 335 238 419 6.27e-23 99.4
MS.gene035252.t1 MTR_3g452360 29.319 191 109 7 145 320 175 354 3.58e-22 96.7
MS.gene035252.t1 MTR_3g452360 29.319 191 109 7 145 320 324 503 6.35e-22 97.1
MS.gene035252.t1 MTR_8g092000 30.508 177 115 5 145 320 384 553 1.77e-21 95.9
MS.gene035252.t1 MTR_2g027740 31.073 177 114 5 145 320 471 640 2.10e-21 95.9
MS.gene035252.t1 MTR_2g015550 27.839 273 157 10 62 331 285 520 3.63e-21 94.7
MS.gene035252.t1 MTR_7g075840 26.482 253 151 7 69 320 419 637 1.57e-19 90.1
MS.gene035252.t1 MTR_8g033360 27.193 228 138 6 62 289 379 578 3.64e-19 89.0
MS.gene035252.t1 MTR_3g107930 24.710 259 164 7 62 320 334 561 8.11e-19 87.8
MS.gene035252.t1 MTR_3g107930 24.710 259 164 7 62 320 411 638 1.04e-18 87.8
MS.gene035252.t1 MTR_6g013840 32.418 182 112 5 145 320 329 505 5.78e-18 85.1
MS.gene035252.t1 MTR_7g096160 29.213 178 115 6 145 318 455 625 9.01e-16 79.0
MS.gene035252.t1 MTR_2g006790 29.032 217 118 9 119 331 312 496 1.16e-13 72.0
MS.gene035252.t1 MTR_7g012370 32.432 111 68 3 145 250 334 442 5.39e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035252.t1 AT3G06260 76.923 325 71 4 26 347 28 351 0.0 533
MS.gene035252.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene035252.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene035252.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene035252.t1 AT1G13250 62.154 325 112 3 27 341 16 339 3.53e-141 404
MS.gene035252.t1 AT1G70090 60.252 317 109 4 38 338 47 362 3.36e-140 403
MS.gene035252.t1 AT1G70090 60.252 317 109 4 38 338 47 362 3.36e-140 403
MS.gene035252.t1 AT1G24170 54.795 365 128 7 8 339 6 366 4.43e-140 403
MS.gene035252.t1 AT3G62660 56.395 344 132 5 10 338 16 356 3.49e-138 397
MS.gene035252.t1 AT1G02720 58.599 314 121 3 36 341 48 360 2.46e-137 395
MS.gene035252.t1 AT1G02720 58.599 314 121 3 36 341 48 360 2.46e-137 395
MS.gene035252.t1 AT3G28340 55.901 322 128 4 36 346 39 357 9.49e-137 393
MS.gene035252.t1 AT3G50760 56.604 318 125 4 42 347 25 341 3.13e-129 373
MS.gene035252.t1 AT1G19300 58.176 318 113 4 42 340 29 345 8.94e-126 365
MS.gene035252.t1 AT3G01040 31.868 182 113 5 145 320 296 472 2.10e-26 109
MS.gene035252.t1 AT3G01040 31.868 182 113 5 145 320 329 505 3.04e-26 109
MS.gene035252.t1 AT3G01040 31.868 182 113 5 145 320 329 505 3.04e-26 109
MS.gene035252.t1 AT5G15470 32.973 185 107 6 145 320 329 505 2.89e-25 107
MS.gene035252.t1 AT3G25140 32.828 198 117 7 145 337 363 549 1.86e-24 104
MS.gene035252.t1 AT5G54690 30.556 180 114 5 145 318 331 505 2.59e-24 103
MS.gene035252.t1 AT1G18580 32.203 177 112 5 145 320 342 511 5.79e-24 103
MS.gene035252.t1 AT5G47780 32.386 176 113 5 145 320 420 589 6.97e-24 103
MS.gene035252.t1 AT4G38270 32.961 179 108 5 145 320 484 653 2.08e-22 99.0
MS.gene035252.t1 AT4G38270 32.961 179 108 5 145 320 480 649 2.29e-22 98.6
MS.gene035252.t1 AT3G58790 30.000 200 121 8 145 335 204 393 5.12e-21 93.6
MS.gene035252.t1 AT3G58790 30.000 200 121 8 145 335 336 525 6.30e-21 94.4
MS.gene035252.t1 AT1G06780 33.333 177 109 5 145 318 403 573 3.40e-20 92.0
MS.gene035252.t1 AT1G06780 33.333 177 109 5 145 318 390 560 4.16e-20 92.0
MS.gene035252.t1 AT3G61130 29.379 177 117 5 145 320 477 646 3.80e-19 89.0
MS.gene035252.t1 AT2G30575 31.844 179 113 6 145 320 411 583 1.53e-18 87.0
MS.gene035252.t1 AT3G02350 29.319 191 126 5 145 335 365 546 1.34e-17 84.3
MS.gene035252.t1 AT2G46480 25.940 266 160 9 62 324 286 517 2.10e-16 80.5
MS.gene035252.t1 AT2G46480 25.954 262 157 9 62 320 299 526 2.90e-16 80.1
MS.gene035252.t1 AT2G20810 29.091 275 150 11 69 340 295 527 1.24e-15 78.2

Find 95 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTTCACAAAACAATTT+TGG 0.231657 8.1:+9393634 MS.gene035252:CDS
CTCCAATGCAATAAACTAAT+TGG 0.232412 8.1:-9393942 None:intergenic
CATGCATTGTGGACCATCTA+TGG 0.254614 8.1:+9394006 MS.gene035252:CDS
ATCCAAGAGGATATATCATT+TGG 0.280778 8.1:+9393797 MS.gene035252:CDS
TTTAAGACAGGATGGTCTTC+AGG 0.316583 8.1:+9393022 None:intergenic
TTTATGCTTGTGAATAGTTC+AGG 0.327122 8.1:-9393342 None:intergenic
TGGTGATGGATGTGGATAAA+TGG 0.329278 8.1:+9393721 MS.gene035252:CDS
AGATGGAACCAACATGGTTT+AGG 0.357389 8.1:+9393876 MS.gene035252:CDS
AAATCTGTATGACAATATTC+TGG 0.369299 8.1:-9393606 None:intergenic
CTTGATGTTAATTACCTTCG+TGG 0.380377 8.1:+9393234 MS.gene035252:CDS
TTAAAGCAGTTGATCATAGA+TGG 0.380750 8.1:+9393859 MS.gene035252:CDS
TAATGGGGTGGAGGAAGGAC+AGG 0.388988 8.1:-9393083 None:intergenic
GTTCTCGCAAAGACGTTTGA+TGG 0.395785 8.1:+9393666 MS.gene035252:CDS
TCCTCGCCGTTCCGGAAAGC+GGG 0.396369 8.1:-9393168 None:intergenic
CATGGTTGAGGTTGGATTCA+AGG 0.396771 8.1:+9393979 MS.gene035252:CDS
AGCCACATTCCTCGCCGTTC+CGG 0.410897 8.1:-9393176 None:intergenic
GTCCAATTAGTTTATTGCAT+TGG 0.412346 8.1:+9393940 MS.gene035252:CDS
TTGATGATATAGCTAAGCTT+TGG 0.412649 8.1:+9393550 MS.gene035252:CDS
TTTAATTCTGATCGTGTTCG+CGG 0.414607 8.1:+9393402 MS.gene035252:CDS
CGTGTAGTTGTCATACTCCT+TGG 0.415246 8.1:+9393057 MS.gene035252:CDS
TCAAACGTCTTTGCGAGAAC+CGG 0.418289 8.1:-9393663 None:intergenic
CCAAGACGGATAGAGGTAAT+GGG 0.421902 8.1:-9393099 None:intergenic
TGATGATATAGCTAAGCTTT+GGG 0.428107 8.1:+9393551 MS.gene035252:CDS
GGAGGAAGGACAGGAGGCCA+AGG 0.431784 8.1:-9393074 None:intergenic
GGGCTCCTTACGATTTGTAT+AGG 0.441558 8.1:+9394027 MS.gene035252:CDS
AGAGGTAATGGGGTGGAGGA+AGG 0.442243 8.1:-9393088 None:intergenic
GCCAAGACGGATAGAGGTAA+TGG 0.446240 8.1:-9393100 None:intergenic
ATGAGCAGAAAGGAAGTAGA+AGG 0.446739 8.1:-9393313 None:intergenic
TTATTTCAACACAGGTGTAA+TGG 0.450858 8.1:+9393701 MS.gene035252:CDS
TTATTGCATTGGAGTGGAAA+AGG 0.458081 8.1:+9393951 MS.gene035252:CDS
CAGAAGAGGGTAGGCGGACA+AGG 0.465642 8.1:-9393122 None:intergenic
TCCAAGAGGATATATCATTT+GGG 0.465682 8.1:+9393798 MS.gene035252:CDS
GGATAGAGGTAATGGGGTGG+AGG 0.471735 8.1:-9393092 None:intergenic
AATCGTAAGGAGCCCATAGA+TGG 0.474933 8.1:-9394019 None:intergenic
AAATCGTCATGTTTAGATAA+GGG 0.479874 8.1:-9393374 None:intergenic
CACGAAGGTAATTAACATCA+AGG 0.480331 8.1:-9393233 None:intergenic
GACAAGGCCAAGACGGATAG+AGG 0.483676 8.1:-9393106 None:intergenic
CCCATTACCTCTATCCGTCT+TGG 0.486806 8.1:+9393099 MS.gene035252:CDS
ATACAGAGAAAGTTGAAGAA+TGG 0.487108 8.1:+9393757 MS.gene035252:CDS
TAAATCGTCATGTTTAGATA+AGG 0.495139 8.1:-9393375 None:intergenic
AAAGTCAATTAGAAAAGCAT+TGG 0.497024 8.1:+9393434 MS.gene035252:CDS
TTCCTCGCCGTTCCGGAAAG+CGG 0.498683 8.1:-9393169 None:intergenic
ACCCAAATGATATATCCTCT+TGG 0.500116 8.1:-9393799 None:intergenic
TATATCCTTGCATAATTCAA+AGG 0.509392 8.1:-9393462 None:intergenic
TGCAATAAACTAATTGGACC+AGG 0.513743 8.1:-9393936 None:intergenic
TTAGGTGGAGATAACATTGA+AGG 0.533787 8.1:+9393894 MS.gene035252:CDS
CATGGACAACACTGCAGCCA+TGG 0.535328 8.1:-9393259 None:intergenic
AGGTGTAATGGTGATGGATG+TGG 0.537826 8.1:+9393713 MS.gene035252:CDS
AGGTAAACCATGGTTGAGGT+TGG 0.540509 8.1:+9393971 MS.gene035252:CDS
CTTGAATCCAACCTCAACCA+TGG 0.544223 8.1:-9393978 None:intergenic
ATTAGTTTATTGCATTGGAG+TGG 0.546400 8.1:+9393945 MS.gene035252:CDS
TTCCGGAACGGCGAGGAATG+TGG 0.547862 8.1:+9393174 MS.gene035252:CDS
ATCAACCTTTGAATTATGCA+AGG 0.548743 8.1:+9393457 MS.gene035252:CDS
CAAACGTCTTTGCGAGAACC+GGG 0.553347 8.1:-9393662 None:intergenic
ATGCATTGTGGACCATCTAT+GGG 0.557021 8.1:+9394007 MS.gene035252:CDS
CCTCGCCGTTCCGGAAAGCG+GGG 0.557081 8.1:-9393167 None:intergenic
GTAATTAACATCAAGGGTCA+TGG 0.557438 8.1:-9393226 None:intergenic
TTTAGATTCTGACCTTGTTG+TGG 0.558089 8.1:+9393527 MS.gene035252:CDS
GGAGGTCAGAAGAGGGTAGG+CGG 0.560759 8.1:-9393128 None:intergenic
AGAGAAAGTTGAAGAATGGA+TGG 0.562628 8.1:+9393761 MS.gene035252:CDS
CGTCATGTTTAGATAAGGGA+AGG 0.565903 8.1:-9393370 None:intergenic
ATTTATACGATCAGCTTCTG+TGG 0.568749 8.1:-9393199 None:intergenic
CAGGAGCATCATGAGCAGAA+AGG 0.571515 8.1:-9393323 None:intergenic
CATAGATGGTCCACAATGCA+TGG 0.571731 8.1:-9394005 None:intergenic
AAGCCATGTTATTTCAACAC+AGG 0.579959 8.1:+9393693 MS.gene035252:CDS
CTCGCCGTTCCGGAAAGCGG+GGG 0.586591 8.1:-9393166 None:intergenic
GATGACCTATACAAATCGTA+AGG 0.587720 8.1:-9394032 None:intergenic
ACACCTGTGTTGAAATAACA+TGG 0.589070 8.1:-9393696 None:intergenic
TGGAACCAACATGGTTTAGG+TGG 0.594893 8.1:+9393879 MS.gene035252:CDS
CTTTGGGGTGTAGACATGGA+AGG 0.596287 8.1:+9393567 MS.gene035252:CDS
TGGGGTGGAGGAAGGACAGG+AGG 0.599559 8.1:-9393080 None:intergenic
GAGGGAGGTCAGAAGAGGGT+AGG 0.601209 8.1:-9393131 None:intergenic
TTCAAGGAAGCCATGCATTG+TGG 0.601269 8.1:+9393995 MS.gene035252:CDS
CAACACAGGTGTAATGGTGA+TGG 0.613711 8.1:+9393707 MS.gene035252:CDS
TAAGCTTTGGGGTGTAGACA+TGG 0.613816 8.1:+9393563 MS.gene035252:CDS
TAATTACCTTCGTGGAACCA+TGG 0.617230 8.1:+9393242 MS.gene035252:CDS
TTTGGGGTGTAGACATGGAA+GGG 0.626150 8.1:+9393568 MS.gene035252:CDS
AAAAGAGGGAGGTCAGAAGA+GGG 0.626688 8.1:-9393135 None:intergenic
ACGAAGGTAATTAACATCAA+GGG 0.627230 8.1:-9393232 None:intergenic
TATCTCCACCTAAACCATGT+TGG 0.627381 8.1:-9393884 None:intergenic
GATGATATAGCTAAGCTTTG+GGG 0.638565 8.1:+9393552 MS.gene035252:CDS
GATCATAGATGGAACCAACA+TGG 0.640572 8.1:+9393870 MS.gene035252:CDS
GAAAAGGTAAACCATGGTTG+AGG 0.644192 8.1:+9393967 MS.gene035252:CDS
GTAGGCGGACAAGGCCAAGA+CGG 0.645210 8.1:-9393113 None:intergenic
ACATGTTGAATGTTGTAACA+TGG 0.656912 8.1:-9393277 None:intergenic
CCCCGCTTTCCGGAACGGCG+AGG 0.661029 8.1:+9393167 MS.gene035252:CDS
GACGGATAGAGGTAATGGGG+TGG 0.666414 8.1:-9393095 None:intergenic
GCAATAAACTAATTGGACCA+GGG 0.673769 8.1:-9393935 None:intergenic
CAAGACGGATAGAGGTAATG+GGG 0.681380 8.1:-9393098 None:intergenic
CTATATCATCAACCACAACA+AGG 0.685272 8.1:-9393539 None:intergenic
AGACATGGAAGGGAAAGTAG+TGG 0.686653 8.1:+9393578 MS.gene035252:CDS
GGAGTGGAAAAGGTAAACCA+TGG 0.689517 8.1:+9393961 MS.gene035252:CDS
AAATGTAGAAGCTTACACCC+TGG 0.716978 8.1:+9393918 MS.gene035252:CDS
CTGCAGCCATGGTTCCACGA+AGG 0.735508 8.1:-9393248 None:intergenic
CTGTACAAAAGAAATCCAAG+AGG 0.743316 8.1:+9393784 MS.gene035252:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTCACAAAACAATTT+TGG + chr8.1:9393634-9393653 MS.gene035252:CDS 20.0%
! AAATCGTCATGTTTAGATAA+GGG - chr8.1:9393377-9393396 None:intergenic 25.0%
! AAATCTGTATGACAATATTC+TGG - chr8.1:9393609-9393628 None:intergenic 25.0%
! TAAATCGTCATGTTTAGATA+AGG - chr8.1:9393378-9393397 None:intergenic 25.0%
! TATATCCTTGCATAATTCAA+AGG - chr8.1:9393465-9393484 None:intergenic 25.0%
!! AAAGTCAATTAGAAAAGCAT+TGG + chr8.1:9393434-9393453 MS.gene035252:CDS 25.0%
!!! TTATTCTTCAAAAAAGTGTC+TGG - chr8.1:9394057-9394076 None:intergenic 25.0%
!!! TTTCACAAAACAATTTTGGT+CGG + chr8.1:9393638-9393657 MS.gene035252:CDS 25.0%
ACATGTTGAATGTTGTAACA+TGG - chr8.1:9393280-9393299 None:intergenic 30.0%
ACGAAGGTAATTAACATCAA+GGG - chr8.1:9393235-9393254 None:intergenic 30.0%
ATACAGAGAAAGTTGAAGAA+TGG + chr8.1:9393757-9393776 MS.gene035252:CDS 30.0%
ATCAACCTTTGAATTATGCA+AGG + chr8.1:9393457-9393476 MS.gene035252:CDS 30.0%
ATCCAAGAGGATATATCATT+TGG + chr8.1:9393797-9393816 MS.gene035252:CDS 30.0%
CTCCAATGCAATAAACTAAT+TGG - chr8.1:9393945-9393964 None:intergenic 30.0%
TCCAAGAGGATATATCATTT+GGG + chr8.1:9393798-9393817 MS.gene035252:CDS 30.0%
TGATGATATAGCTAAGCTTT+GGG + chr8.1:9393551-9393570 MS.gene035252:CDS 30.0%
TTAAAGCAGTTGATCATAGA+TGG + chr8.1:9393859-9393878 MS.gene035252:CDS 30.0%
TTATTTCAACACAGGTGTAA+TGG + chr8.1:9393701-9393720 MS.gene035252:CDS 30.0%
TTTATGCTTGTGAATAGTTC+AGG - chr8.1:9393345-9393364 None:intergenic 30.0%
! ATTAGTTTATTGCATTGGAG+TGG + chr8.1:9393945-9393964 MS.gene035252:CDS 30.0%
! GTCCAATTAGTTTATTGCAT+TGG + chr8.1:9393940-9393959 MS.gene035252:CDS 30.0%
! TTGATGATATAGCTAAGCTT+TGG + chr8.1:9393550-9393569 MS.gene035252:CDS 30.0%
ACACCTGTGTTGAAATAACA+TGG - chr8.1:9393699-9393718 None:intergenic 35.0%
ACCCAAATGATATATCCTCT+TGG - chr8.1:9393802-9393821 None:intergenic 35.0%
AGAGAAAGTTGAAGAATGGA+TGG + chr8.1:9393761-9393780 MS.gene035252:CDS 35.0%
ATTTATACGATCAGCTTCTG+TGG - chr8.1:9393202-9393221 None:intergenic 35.0%
CACGAAGGTAATTAACATCA+AGG - chr8.1:9393236-9393255 None:intergenic 35.0%
CTATATCATCAACCACAACA+AGG - chr8.1:9393542-9393561 None:intergenic 35.0%
CTGTACAAAAGAAATCCAAG+AGG + chr8.1:9393784-9393803 MS.gene035252:CDS 35.0%
CTTGATGTTAATTACCTTCG+TGG + chr8.1:9393234-9393253 MS.gene035252:CDS 35.0%
GATGACCTATACAAATCGTA+AGG - chr8.1:9394035-9394054 None:intergenic 35.0%
GATGATATAGCTAAGCTTTG+GGG + chr8.1:9393552-9393571 MS.gene035252:CDS 35.0%
GCAATAAACTAATTGGACCA+GGG - chr8.1:9393938-9393957 None:intergenic 35.0%
GTAATTAACATCAAGGGTCA+TGG - chr8.1:9393229-9393248 None:intergenic 35.0%
TGCAATAAACTAATTGGACC+AGG - chr8.1:9393939-9393958 None:intergenic 35.0%
TTAGGTGGAGATAACATTGA+AGG + chr8.1:9393894-9393913 MS.gene035252:CDS 35.0%
TTATTGCATTGGAGTGGAAA+AGG + chr8.1:9393951-9393970 MS.gene035252:CDS 35.0%
TTTAATTCTGATCGTGTTCG+CGG + chr8.1:9393402-9393421 MS.gene035252:CDS 35.0%
TTTAGATTCTGACCTTGTTG+TGG + chr8.1:9393527-9393546 MS.gene035252:CDS 35.0%
! AAGTAGAAGGCAAGATTTTC+TGG - chr8.1:9393303-9393322 None:intergenic 35.0%
! ATCACACGTTGTACATTTTC+TGG - chr8.1:9393504-9393523 None:intergenic 35.0%
!! AAGCCATGTTATTTCAACAC+AGG + chr8.1:9393693-9393712 MS.gene035252:CDS 35.0%
!! TTCTCTTCCACCATTTTTGT+TGG + chr8.1:9393821-9393840 MS.gene035252:CDS 35.0%
!!! CATTTTTGTTGGTTTTGGCA+GGG + chr8.1:9393832-9393851 MS.gene035252:CDS 35.0%
!!! TCCACCATTTTTGTTGGTTT+TGG + chr8.1:9393827-9393846 MS.gene035252:CDS 35.0%
AAATGTAGAAGCTTACACCC+TGG + chr8.1:9393918-9393937 MS.gene035252:CDS 40.0%
AGATGGAACCAACATGGTTT+AGG + chr8.1:9393876-9393895 MS.gene035252:CDS 40.0%
ATGAGCAGAAAGGAAGTAGA+AGG - chr8.1:9393316-9393335 None:intergenic 40.0%
ATGCATTGTGGACCATCTAT+GGG + chr8.1:9394007-9394026 MS.gene035252:CDS 40.0%
CCTGCCAAAACCAACAAAAA+TGG - chr8.1:9393834-9393853 None:intergenic 40.0%
CGTCATGTTTAGATAAGGGA+AGG - chr8.1:9393373-9393392 None:intergenic 40.0%
GAAAAGGTAAACCATGGTTG+AGG + chr8.1:9393967-9393986 MS.gene035252:CDS 40.0%
GATCATAGATGGAACCAACA+TGG + chr8.1:9393870-9393889 MS.gene035252:CDS 40.0%
GCCAAAACCAACAAAAATGG+TGG - chr8.1:9393831-9393850 None:intergenic 40.0%
TAATTACCTTCGTGGAACCA+TGG + chr8.1:9393242-9393261 MS.gene035252:CDS 40.0%
TATCTCCACCTAAACCATGT+TGG - chr8.1:9393887-9393906 None:intergenic 40.0%
!! AAAACAATTTTGGTCGGACC+CGG + chr8.1:9393644-9393663 MS.gene035252:CDS 40.0%
!! TGGTGATGGATGTGGATAAA+TGG + chr8.1:9393721-9393740 MS.gene035252:CDS 40.0%
!!! CCATTTTTGTTGGTTTTGGC+AGG + chr8.1:9393831-9393850 MS.gene035252:CDS 40.0%
AAAAAGAGGGAGGTCAGAAG+AGG - chr8.1:9393139-9393158 None:intergenic 45.0%
AAAAGAGGGAGGTCAGAAGA+GGG - chr8.1:9393138-9393157 None:intergenic 45.0%
AATCGTAAGGAGCCCATAGA+TGG - chr8.1:9394022-9394041 None:intergenic 45.0%
AGACATGGAAGGGAAAGTAG+TGG + chr8.1:9393578-9393597 MS.gene035252:CDS 45.0%
AGGTAAACCATGGTTGAGGT+TGG + chr8.1:9393971-9393990 MS.gene035252:CDS 45.0%
CAACACAGGTGTAATGGTGA+TGG + chr8.1:9393707-9393726 MS.gene035252:CDS 45.0%
CAAGACGGATAGAGGTAATG+GGG - chr8.1:9393101-9393120 None:intergenic 45.0%
CATAGATGGTCCACAATGCA+TGG - chr8.1:9394008-9394027 None:intergenic 45.0%
CATGCATTGTGGACCATCTA+TGG + chr8.1:9394006-9394025 MS.gene035252:CDS 45.0%
CATGGTTGAGGTTGGATTCA+AGG + chr8.1:9393979-9393998 MS.gene035252:CDS 45.0%
CCAAGACGGATAGAGGTAAT+GGG - chr8.1:9393102-9393121 None:intergenic 45.0%
CGTGTAGTTGTCATACTCCT+TGG + chr8.1:9393057-9393076 MS.gene035252:CDS 45.0%
CTTGAATCCAACCTCAACCA+TGG - chr8.1:9393981-9394000 None:intergenic 45.0%
GGAGTGGAAAAGGTAAACCA+TGG + chr8.1:9393961-9393980 MS.gene035252:CDS 45.0%
GGGCTCCTTACGATTTGTAT+AGG + chr8.1:9394027-9394046 MS.gene035252:CDS 45.0%
GTTCTCGCAAAGACGTTTGA+TGG + chr8.1:9393666-9393685 MS.gene035252:CDS 45.0%
TCAAACGTCTTTGCGAGAAC+CGG - chr8.1:9393666-9393685 None:intergenic 45.0%
TGGAACCAACATGGTTTAGG+TGG + chr8.1:9393879-9393898 MS.gene035252:CDS 45.0%
TTCAAGGAAGCCATGCATTG+TGG + chr8.1:9393995-9394014 MS.gene035252:CDS 45.0%
! TTTGGGGTGTAGACATGGAA+GGG + chr8.1:9393568-9393587 MS.gene035252:CDS 45.0%
!! AGGTGTAATGGTGATGGATG+TGG + chr8.1:9393713-9393732 MS.gene035252:CDS 45.0%
!! TAAGCTTTGGGGTGTAGACA+TGG + chr8.1:9393563-9393582 MS.gene035252:CDS 45.0%
CAAACGTCTTTGCGAGAACC+GGG - chr8.1:9393665-9393684 None:intergenic 50.0%
CCCATTACCTCTATCCGTCT+TGG + chr8.1:9393099-9393118 MS.gene035252:CDS 50.0%
GCCAAGACGGATAGAGGTAA+TGG - chr8.1:9393103-9393122 None:intergenic 50.0%
!! CAGGAGCATCATGAGCAGAA+AGG - chr8.1:9393326-9393345 None:intergenic 50.0%
!! CTTTGGGGTGTAGACATGGA+AGG + chr8.1:9393567-9393586 MS.gene035252:CDS 50.0%
CATGGACAACACTGCAGCCA+TGG - chr8.1:9393262-9393281 None:intergenic 55.0%
CGGGGGCTTCACGAAAAAGA+GGG - chr8.1:9393152-9393171 None:intergenic 55.0%
GACAAGGCCAAGACGGATAG+AGG - chr8.1:9393109-9393128 None:intergenic 55.0%
GGGCTTCACGAAAAAGAGGG+AGG - chr8.1:9393149-9393168 None:intergenic 55.0%
TAATGGGGTGGAGGAAGGAC+AGG - chr8.1:9393086-9393105 None:intergenic 55.0%
!! AGAGGTAATGGGGTGGAGGA+AGG - chr8.1:9393091-9393110 None:intergenic 55.0%
!! GACGGATAGAGGTAATGGGG+TGG - chr8.1:9393098-9393117 None:intergenic 55.0%
!! GGATAGAGGTAATGGGGTGG+AGG - chr8.1:9393095-9393114 None:intergenic 55.0%
AGCCACATTCCTCGCCGTTC+CGG - chr8.1:9393179-9393198 None:intergenic 60.0%
CAGAAGAGGGTAGGCGGACA+AGG - chr8.1:9393125-9393144 None:intergenic 60.0%
CTGCAGCCATGGTTCCACGA+AGG - chr8.1:9393251-9393270 None:intergenic 60.0%
GAGGGAGGTCAGAAGAGGGT+AGG - chr8.1:9393134-9393153 None:intergenic 60.0%
GCGGGGGCTTCACGAAAAAG+AGG - chr8.1:9393153-9393172 None:intergenic 60.0%
GGAGGTCAGAAGAGGGTAGG+CGG - chr8.1:9393131-9393150 None:intergenic 60.0%
GTAGGCGGACAAGGCCAAGA+CGG - chr8.1:9393116-9393135 None:intergenic 60.0%
TTCCGGAACGGCGAGGAATG+TGG + chr8.1:9393174-9393193 MS.gene035252:CDS 60.0%
TTCCTCGCCGTTCCGGAAAG+CGG - chr8.1:9393172-9393191 None:intergenic 60.0%
TTCGTGAAGCCCCCGCTTTC+CGG + chr8.1:9393157-9393176 MS.gene035252:CDS 60.0%
GAAGCCCCCGCTTTCCGGAA+CGG + chr8.1:9393162-9393181 MS.gene035252:CDS 65.0%
GGAGGAAGGACAGGAGGCCA+AGG - chr8.1:9393077-9393096 None:intergenic 65.0%
TCCTCGCCGTTCCGGAAAGC+GGG - chr8.1:9393171-9393190 None:intergenic 65.0%
TGGGGTGGAGGAAGGACAGG+AGG - chr8.1:9393083-9393102 None:intergenic 65.0%
CCTCGCCGTTCCGGAAAGCG+GGG - chr8.1:9393170-9393189 None:intergenic 70.0%
CTCGCCGTTCCGGAAAGCGG+GGG - chr8.1:9393169-9393188 None:intergenic 70.0%
CCCCGCTTTCCGGAACGGCG+AGG + chr8.1:9393167-9393186 MS.gene035252:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 9393033 9394076 9393033 ID=MS.gene035252
chr8.1 mRNA 9393033 9394076 9393033 ID=MS.gene035252.t1;Parent=MS.gene035252
chr8.1 exon 9393033 9394076 9393033 ID=MS.gene035252.t1.exon1;Parent=MS.gene035252.t1
chr8.1 CDS 9393033 9394076 9393033 ID=cds.MS.gene035252.t1;Parent=MS.gene035252.t1
Gene Sequence

>MS.gene035252

ATGGTCTTCAGGAGTTTCAATTCTCGTGTAGTTGTCATACTCCTTGGCCTCCTGTCCTTCCTCCACCCCATTACCTCTATCCGTCTTGGCCTTGTCCGCCTACCCTCTTCTGACCTCCCTCTTTTTCGTGAAGCCCCCGCTTTCCGGAACGGCGAGGAATGTGGCTCCACAGAAGCTGATCGTATAAATGTTGCCATGACCCTTGATGTTAATTACCTTCGTGGAACCATGGCTGCAGTGTTGTCCATGTTACAACATTCAACATGTCCAGAAAATCTTGCCTTCTACTTCCTTTCTGCTCATGATGCTCCTGAACTATTCACAAGCATAAAATCAACCTTCCCTTATCTAAACATGACGATTTATCACTTTAATTCTGATCGTGTTCGCGGTAAGATATCAAAGTCAATTAGAAAAGCATTGGATCAACCTTTGAATTATGCAAGGATATATCTTGCAGATACAATACCAGAAAATGTACAACGTGTGATATATTTAGATTCTGACCTTGTTGTGGTTGATGATATAGCTAAGCTTTGGGGTGTAGACATGGAAGGGAAAGTAGTGGCTGCTCCAGAATATTGTCATACAGATTTCACATTGTATTTCACAAAACAATTTTGGTCGGACCCGGTTCTCGCAAAGACGTTTGATGGAAGAAAGCCATGTTATTTCAACACAGGTGTAATGGTGATGGATGTGGATAAATGGAGAAAAGAAAAATATACAGAGAAAGTTGAAGAATGGATGGCTGTACAAAAGAAATCCAAGAGGATATATCATTTGGGTTCTCTTCCACCATTTTTGTTGGTTTTGGCAGGGAATATTAAAGCAGTTGATCATAGATGGAACCAACATGGTTTAGGTGGAGATAACATTGAAGGTAAATGTAGAAGCTTACACCCTGGTCCAATTAGTTTATTGCATTGGAGTGGAAAAGGTAAACCATGGTTGAGGTTGGATTCAAGGAAGCCATGCATTGTGGACCATCTATGGGCTCCTTACGATTTGTATAGGTCATCCAGACACTTTTTTGAAGAATAA
Protein sequence

>MS.gene035252.t1

MVFRSFNSRVVVILLGLLSFLHPITSIRLGLVRLPSSDLPLFREAPAFRNGEECGSTEADRINVAMTLDVNYLRGTMAAVLSMLQHSTCPENLAFYFLSAHDAPELFTSIKSTFPYLNMTIYHFNSDRVRGKISKSIRKALDQPLNYARIYLADTIPENVQRVIYLDSDLVVVDDIAKLWGVDMEGKVVAAPEYCHTDFTLYFTKQFWSDPVLAKTFDGRKPCYFNTGVMVMDVDKWRKEKYTEKVEEWMAVQKKSKRIYHLGSLPPFLLVLAGNIKAVDHRWNQHGLGGDNIEGKCRSLHPGPISLLHWSGKGKPWLRLDSRKPCIVDHLWAPYDLYRSSRHFFEE