AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036565

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036565.t1 MTR_4g118030 98.559 347 5 0 1 347 1 347 0.0 714
MS.gene036565.t1 MTR_7g094230 74.837 306 73 2 42 347 51 352 1.26e-174 489
MS.gene036565.t1 MTR_1g089820 73.065 323 83 2 25 347 37 355 3.56e-171 480
MS.gene036565.t1 MTR_3g092310 61.424 337 120 4 8 341 6 335 5.55e-155 439
MS.gene036565.t1 MTR_7g109210 54.651 344 144 5 10 344 17 357 2.86e-137 394
MS.gene036565.t1 MTR_5g036580 54.571 361 134 6 10 344 9 365 7.98e-137 394
MS.gene036565.t1 MTR_1g021855 58.044 317 114 4 42 340 46 361 6.56e-133 384
MS.gene036565.t1 MTR_3g111600 61.429 280 106 2 66 344 1 279 3.19e-130 374
MS.gene036565.t1 MTR_8g078240 56.090 312 123 4 42 340 29 339 9.77e-130 375
MS.gene036565.t1 MTR_5g019220 54.434 327 121 4 41 340 36 361 4.13e-127 369
MS.gene036565.t1 MTR_6g008900 53.651 315 127 5 42 338 47 360 6.55e-126 366
MS.gene036565.t1 MTR_4g071620 53.651 315 127 5 42 338 47 360 6.55e-126 366
MS.gene036565.t1 MTR_4g133570 30.729 192 122 5 135 320 251 437 5.18e-25 105
MS.gene036565.t1 MTR_7g012370 31.694 183 108 6 145 318 334 508 1.65e-24 104
MS.gene036565.t1 MTR_2g082650 29.255 188 110 6 145 320 209 385 6.13e-24 102
MS.gene036565.t1 MTR_4g109890 32.768 177 111 5 145 320 340 509 1.21e-23 102
MS.gene036565.t1 MTR_2g082650 29.255 188 110 6 145 320 338 514 1.50e-23 101
MS.gene036565.t1 MTR_6g016380 30.890 191 123 5 145 335 359 540 3.33e-23 100
MS.gene036565.t1 MTR_2g461670 31.073 177 114 5 145 320 395 564 5.37e-23 100
MS.gene036565.t1 MTR_7g055600 32.124 193 118 6 145 335 238 419 6.27e-23 99.4
MS.gene036565.t1 MTR_7g057530 32.124 193 118 6 145 335 238 419 6.27e-23 99.4
MS.gene036565.t1 MTR_3g452360 29.319 191 109 7 145 320 175 354 3.58e-22 96.7
MS.gene036565.t1 MTR_3g452360 29.319 191 109 7 145 320 324 503 6.35e-22 97.1
MS.gene036565.t1 MTR_8g092000 30.508 177 115 5 145 320 384 553 1.77e-21 95.9
MS.gene036565.t1 MTR_2g027740 31.073 177 114 5 145 320 471 640 2.10e-21 95.9
MS.gene036565.t1 MTR_2g015550 27.839 273 157 10 62 331 285 520 3.63e-21 94.7
MS.gene036565.t1 MTR_7g075840 26.482 253 151 7 69 320 419 637 1.57e-19 90.1
MS.gene036565.t1 MTR_8g033360 27.193 228 138 6 62 289 379 578 3.64e-19 89.0
MS.gene036565.t1 MTR_3g107930 24.710 259 164 7 62 320 334 561 8.11e-19 87.8
MS.gene036565.t1 MTR_3g107930 24.710 259 164 7 62 320 411 638 1.04e-18 87.8
MS.gene036565.t1 MTR_6g013840 32.418 182 112 5 145 320 329 505 5.78e-18 85.1
MS.gene036565.t1 MTR_7g096160 29.213 178 115 6 145 318 455 625 9.01e-16 79.0
MS.gene036565.t1 MTR_2g006790 29.032 217 118 9 119 331 312 496 1.16e-13 72.0
MS.gene036565.t1 MTR_7g012370 32.432 111 68 3 145 250 334 442 5.39e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036565.t1 AT3G06260 76.923 325 71 4 26 347 28 351 0.0 533
MS.gene036565.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene036565.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene036565.t1 AT4G02130 56.805 338 132 5 10 341 16 345 2.11e-141 404
MS.gene036565.t1 AT1G13250 62.154 325 112 3 27 341 16 339 3.53e-141 404
MS.gene036565.t1 AT1G70090 60.252 317 109 4 38 338 47 362 3.36e-140 403
MS.gene036565.t1 AT1G70090 60.252 317 109 4 38 338 47 362 3.36e-140 403
MS.gene036565.t1 AT1G24170 54.795 365 128 7 8 339 6 366 4.43e-140 403
MS.gene036565.t1 AT3G62660 56.395 344 132 5 10 338 16 356 3.49e-138 397
MS.gene036565.t1 AT1G02720 58.599 314 121 3 36 341 48 360 2.46e-137 395
MS.gene036565.t1 AT1G02720 58.599 314 121 3 36 341 48 360 2.46e-137 395
MS.gene036565.t1 AT3G28340 55.901 322 128 4 36 346 39 357 9.49e-137 393
MS.gene036565.t1 AT3G50760 56.604 318 125 4 42 347 25 341 3.13e-129 373
MS.gene036565.t1 AT1G19300 58.176 318 113 4 42 340 29 345 8.94e-126 365
MS.gene036565.t1 AT3G01040 31.868 182 113 5 145 320 296 472 2.10e-26 109
MS.gene036565.t1 AT3G01040 31.868 182 113 5 145 320 329 505 3.04e-26 109
MS.gene036565.t1 AT3G01040 31.868 182 113 5 145 320 329 505 3.04e-26 109
MS.gene036565.t1 AT5G15470 32.973 185 107 6 145 320 329 505 2.89e-25 107
MS.gene036565.t1 AT3G25140 32.828 198 117 7 145 337 363 549 1.86e-24 104
MS.gene036565.t1 AT5G54690 30.556 180 114 5 145 318 331 505 2.59e-24 103
MS.gene036565.t1 AT1G18580 32.203 177 112 5 145 320 342 511 5.79e-24 103
MS.gene036565.t1 AT5G47780 32.386 176 113 5 145 320 420 589 6.97e-24 103
MS.gene036565.t1 AT4G38270 32.961 179 108 5 145 320 484 653 2.08e-22 99.0
MS.gene036565.t1 AT4G38270 32.961 179 108 5 145 320 480 649 2.29e-22 98.6
MS.gene036565.t1 AT3G58790 30.000 200 121 8 145 335 204 393 5.12e-21 93.6
MS.gene036565.t1 AT3G58790 30.000 200 121 8 145 335 336 525 6.30e-21 94.4
MS.gene036565.t1 AT1G06780 33.333 177 109 5 145 318 403 573 3.40e-20 92.0
MS.gene036565.t1 AT1G06780 33.333 177 109 5 145 318 390 560 4.16e-20 92.0
MS.gene036565.t1 AT3G61130 29.379 177 117 5 145 320 477 646 3.80e-19 89.0
MS.gene036565.t1 AT2G30575 31.844 179 113 6 145 320 411 583 1.53e-18 87.0
MS.gene036565.t1 AT3G02350 29.319 191 126 5 145 335 365 546 1.34e-17 84.3
MS.gene036565.t1 AT2G46480 25.940 266 160 9 62 324 286 517 2.10e-16 80.5
MS.gene036565.t1 AT2G46480 25.954 262 157 9 62 320 299 526 2.90e-16 80.1
MS.gene036565.t1 AT2G20810 29.091 275 150 11 69 340 295 527 1.24e-15 78.2

Find 95 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTTCACAAAACAATTT+TGG 0.231657 8.3:+8186506 MS.gene036565:CDS
CTCCAATGCAATAAACTAAT+TGG 0.232412 8.3:-8186814 None:intergenic
CATGCATTGTGGACCATCTA+TGG 0.254614 8.3:+8186878 MS.gene036565:CDS
ATCCAAGAGGATATATCATT+TGG 0.280778 8.3:+8186669 MS.gene036565:CDS
TTTAAGACAGGATGGTCTTC+AGG 0.316583 8.3:+8185894 None:intergenic
TTTATGCTTGTGAATAGTTC+AGG 0.327122 8.3:-8186214 None:intergenic
TGGTGATGGATGTGGATAAA+TGG 0.329278 8.3:+8186593 MS.gene036565:CDS
AGATGGAACCAACATGGTTT+AGG 0.357389 8.3:+8186748 MS.gene036565:CDS
AAATCTGTATGACAATATTC+TGG 0.369299 8.3:-8186478 None:intergenic
CTTGATGTTAATTACCTTCG+TGG 0.380377 8.3:+8186106 MS.gene036565:CDS
TTAAAGCAGTTGATCATAGA+TGG 0.380750 8.3:+8186731 MS.gene036565:CDS
TAATGGGGTGGAGGAAGGAC+AGG 0.388988 8.3:-8185955 None:intergenic
GTTCTCGCAAAGACGTTTGA+TGG 0.395785 8.3:+8186538 MS.gene036565:CDS
TCCTCGCCGTTCCGGAAAGC+GGG 0.396369 8.3:-8186040 None:intergenic
CATGGTTGAGGTTGGATTCA+AGG 0.396771 8.3:+8186851 MS.gene036565:CDS
AGCCACATTCCTCGCCGTTC+CGG 0.410897 8.3:-8186048 None:intergenic
GTCCAATTAGTTTATTGCAT+TGG 0.412346 8.3:+8186812 MS.gene036565:CDS
TTGATGATATAGCTAAGCTT+TGG 0.412649 8.3:+8186422 MS.gene036565:CDS
TTTAATTCTGATCGTGTTCG+CGG 0.414607 8.3:+8186274 MS.gene036565:CDS
CGTGTAGTTGTCATACTCCT+TGG 0.415246 8.3:+8185929 MS.gene036565:CDS
TCAAACGTCTTTGCGAGAAC+CGG 0.418289 8.3:-8186535 None:intergenic
CCAAGACGGATAGAGGTAAT+GGG 0.421902 8.3:-8185971 None:intergenic
TGATGATATAGCTAAGCTTT+GGG 0.428107 8.3:+8186423 MS.gene036565:CDS
GGAGGAAGGACAGGAGGCCA+AGG 0.431784 8.3:-8185946 None:intergenic
GGGCTCCTTACGATTTGTAT+AGG 0.441558 8.3:+8186899 MS.gene036565:CDS
AGAGGTAATGGGGTGGAGGA+AGG 0.442243 8.3:-8185960 None:intergenic
GCCAAGACGGATAGAGGTAA+TGG 0.446240 8.3:-8185972 None:intergenic
ATGAGCAGAAAGGAAGTAGA+AGG 0.446739 8.3:-8186185 None:intergenic
TTATTTCAACACAGGTGTAA+TGG 0.450858 8.3:+8186573 MS.gene036565:CDS
TTATTGCATTGGAGTGGAAA+AGG 0.458081 8.3:+8186823 MS.gene036565:CDS
CAGAAGAGGGTAGGCGGACA+AGG 0.465642 8.3:-8185994 None:intergenic
TCCAAGAGGATATATCATTT+GGG 0.465682 8.3:+8186670 MS.gene036565:CDS
GGATAGAGGTAATGGGGTGG+AGG 0.471735 8.3:-8185964 None:intergenic
AATCGTAAGGAGCCCATAGA+TGG 0.474933 8.3:-8186891 None:intergenic
AAATCGTCATGTTTAGATAA+GGG 0.479874 8.3:-8186246 None:intergenic
CACGAAGGTAATTAACATCA+AGG 0.480331 8.3:-8186105 None:intergenic
GACAAGGCCAAGACGGATAG+AGG 0.483676 8.3:-8185978 None:intergenic
CCCATTACCTCTATCCGTCT+TGG 0.486806 8.3:+8185971 MS.gene036565:CDS
ATACAGAGAAAGTTGAAGAA+TGG 0.487108 8.3:+8186629 MS.gene036565:CDS
TAAATCGTCATGTTTAGATA+AGG 0.495139 8.3:-8186247 None:intergenic
AAAGTCAATTAGAAAAGCAT+TGG 0.497024 8.3:+8186306 MS.gene036565:CDS
TTCCTCGCCGTTCCGGAAAG+CGG 0.498683 8.3:-8186041 None:intergenic
ACCCAAATGATATATCCTCT+TGG 0.500116 8.3:-8186671 None:intergenic
TATATCCTTGCATAATTCAA+AGG 0.509392 8.3:-8186334 None:intergenic
TGCAATAAACTAATTGGACC+AGG 0.513743 8.3:-8186808 None:intergenic
TTAGGTGGAGATAACATTGA+AGG 0.533787 8.3:+8186766 MS.gene036565:CDS
CATGGACAACACTGCAGCCA+TGG 0.535328 8.3:-8186131 None:intergenic
AGGTGTAATGGTGATGGATG+TGG 0.537826 8.3:+8186585 MS.gene036565:CDS
AGGTAAACCATGGTTGAGGT+TGG 0.540509 8.3:+8186843 MS.gene036565:CDS
CTTGAATCCAACCTCAACCA+TGG 0.544223 8.3:-8186850 None:intergenic
ATTAGTTTATTGCATTGGAG+TGG 0.546400 8.3:+8186817 MS.gene036565:CDS
TTCCGGAACGGCGAGGAATG+TGG 0.547862 8.3:+8186046 MS.gene036565:CDS
ATCAACCTTTGAATTATGCA+AGG 0.548743 8.3:+8186329 MS.gene036565:CDS
CAAACGTCTTTGCGAGAACC+GGG 0.553347 8.3:-8186534 None:intergenic
ATGCATTGTGGACCATCTAT+GGG 0.557021 8.3:+8186879 MS.gene036565:CDS
CCTCGCCGTTCCGGAAAGCG+GGG 0.557081 8.3:-8186039 None:intergenic
GTAATTAACATCAAGGGTCA+TGG 0.557438 8.3:-8186098 None:intergenic
TTTAGATTCTGACCTTGTTG+TGG 0.558089 8.3:+8186399 MS.gene036565:CDS
GGAGGTCAGAAGAGGGTAGG+CGG 0.560759 8.3:-8186000 None:intergenic
AGAGAAAGTTGAAGAATGGA+TGG 0.562628 8.3:+8186633 MS.gene036565:CDS
CGTCATGTTTAGATAAGGGA+AGG 0.565903 8.3:-8186242 None:intergenic
ATTTATACGATCAGCTTCTG+TGG 0.568749 8.3:-8186071 None:intergenic
CAGGAGCATCATGAGCAGAA+AGG 0.571515 8.3:-8186195 None:intergenic
CATAGATGGTCCACAATGCA+TGG 0.571731 8.3:-8186877 None:intergenic
AAGCCATGTTATTTCAACAC+AGG 0.579959 8.3:+8186565 MS.gene036565:CDS
CTCGCCGTTCCGGAAAGCGG+GGG 0.586591 8.3:-8186038 None:intergenic
GATGACCTATACAAATCGTA+AGG 0.587720 8.3:-8186904 None:intergenic
ACACCTGTGTTGAAATAACA+TGG 0.589070 8.3:-8186568 None:intergenic
TGGAACCAACATGGTTTAGG+TGG 0.594893 8.3:+8186751 MS.gene036565:CDS
CTTTGGGGTGTAGACATGGA+AGG 0.596287 8.3:+8186439 MS.gene036565:CDS
TGGGGTGGAGGAAGGACAGG+AGG 0.599559 8.3:-8185952 None:intergenic
GAGGGAGGTCAGAAGAGGGT+AGG 0.601209 8.3:-8186003 None:intergenic
TTCAAGGAAGCCATGCATTG+TGG 0.601269 8.3:+8186867 MS.gene036565:CDS
CAACACAGGTGTAATGGTGA+TGG 0.613711 8.3:+8186579 MS.gene036565:CDS
TAAGCTTTGGGGTGTAGACA+TGG 0.613816 8.3:+8186435 MS.gene036565:CDS
TAATTACCTTCGTGGAACCA+TGG 0.617230 8.3:+8186114 MS.gene036565:CDS
TTTGGGGTGTAGACATGGAA+GGG 0.626150 8.3:+8186440 MS.gene036565:CDS
AAAAGAGGGAGGTCAGAAGA+GGG 0.626688 8.3:-8186007 None:intergenic
ACGAAGGTAATTAACATCAA+GGG 0.627230 8.3:-8186104 None:intergenic
TATCTCCACCTAAACCATGT+TGG 0.627381 8.3:-8186756 None:intergenic
GATGATATAGCTAAGCTTTG+GGG 0.638565 8.3:+8186424 MS.gene036565:CDS
GATCATAGATGGAACCAACA+TGG 0.640572 8.3:+8186742 MS.gene036565:CDS
GAAAAGGTAAACCATGGTTG+AGG 0.644192 8.3:+8186839 MS.gene036565:CDS
GTAGGCGGACAAGGCCAAGA+CGG 0.645210 8.3:-8185985 None:intergenic
ACATGTTGAATGTTGTAACA+TGG 0.656912 8.3:-8186149 None:intergenic
CCCCGCTTTCCGGAACGGCG+AGG 0.661029 8.3:+8186039 MS.gene036565:CDS
GACGGATAGAGGTAATGGGG+TGG 0.666414 8.3:-8185967 None:intergenic
GCAATAAACTAATTGGACCA+GGG 0.673769 8.3:-8186807 None:intergenic
CAAGACGGATAGAGGTAATG+GGG 0.681380 8.3:-8185970 None:intergenic
CTATATCATCAACCACAACA+AGG 0.685272 8.3:-8186411 None:intergenic
AGACATGGAAGGGAAAGTAG+TGG 0.686653 8.3:+8186450 MS.gene036565:CDS
GGAGTGGAAAAGGTAAACCA+TGG 0.689517 8.3:+8186833 MS.gene036565:CDS
AAATGTAGAAGCTTACACCC+TGG 0.716978 8.3:+8186790 MS.gene036565:CDS
CTGCAGCCATGGTTCCACGA+AGG 0.735508 8.3:-8186120 None:intergenic
CTGTACAAAAGAAATCCAAG+AGG 0.743316 8.3:+8186656 MS.gene036565:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTCACAAAACAATTT+TGG + chr8.3:8186506-8186525 MS.gene036565:CDS 20.0%
! AAATCGTCATGTTTAGATAA+GGG - chr8.3:8186249-8186268 None:intergenic 25.0%
! AAATCTGTATGACAATATTC+TGG - chr8.3:8186481-8186500 None:intergenic 25.0%
! TAAATCGTCATGTTTAGATA+AGG - chr8.3:8186250-8186269 None:intergenic 25.0%
! TATATCCTTGCATAATTCAA+AGG - chr8.3:8186337-8186356 None:intergenic 25.0%
!! AAAGTCAATTAGAAAAGCAT+TGG + chr8.3:8186306-8186325 MS.gene036565:CDS 25.0%
!!! TTATTCTTCAAAAAAGTGTC+TGG - chr8.3:8186929-8186948 None:intergenic 25.0%
!!! TTTCACAAAACAATTTTGGT+CGG + chr8.3:8186510-8186529 MS.gene036565:CDS 25.0%
ACATGTTGAATGTTGTAACA+TGG - chr8.3:8186152-8186171 None:intergenic 30.0%
ACGAAGGTAATTAACATCAA+GGG - chr8.3:8186107-8186126 None:intergenic 30.0%
ATACAGAGAAAGTTGAAGAA+TGG + chr8.3:8186629-8186648 MS.gene036565:CDS 30.0%
ATCAACCTTTGAATTATGCA+AGG + chr8.3:8186329-8186348 MS.gene036565:CDS 30.0%
ATCCAAGAGGATATATCATT+TGG + chr8.3:8186669-8186688 MS.gene036565:CDS 30.0%
CTCCAATGCAATAAACTAAT+TGG - chr8.3:8186817-8186836 None:intergenic 30.0%
TCCAAGAGGATATATCATTT+GGG + chr8.3:8186670-8186689 MS.gene036565:CDS 30.0%
TGATGATATAGCTAAGCTTT+GGG + chr8.3:8186423-8186442 MS.gene036565:CDS 30.0%
TTAAAGCAGTTGATCATAGA+TGG + chr8.3:8186731-8186750 MS.gene036565:CDS 30.0%
TTATTTCAACACAGGTGTAA+TGG + chr8.3:8186573-8186592 MS.gene036565:CDS 30.0%
TTTATGCTTGTGAATAGTTC+AGG - chr8.3:8186217-8186236 None:intergenic 30.0%
! ATTAGTTTATTGCATTGGAG+TGG + chr8.3:8186817-8186836 MS.gene036565:CDS 30.0%
! GTCCAATTAGTTTATTGCAT+TGG + chr8.3:8186812-8186831 MS.gene036565:CDS 30.0%
! TTGATGATATAGCTAAGCTT+TGG + chr8.3:8186422-8186441 MS.gene036565:CDS 30.0%
ACACCTGTGTTGAAATAACA+TGG - chr8.3:8186571-8186590 None:intergenic 35.0%
ACCCAAATGATATATCCTCT+TGG - chr8.3:8186674-8186693 None:intergenic 35.0%
AGAGAAAGTTGAAGAATGGA+TGG + chr8.3:8186633-8186652 MS.gene036565:CDS 35.0%
ATTTATACGATCAGCTTCTG+TGG - chr8.3:8186074-8186093 None:intergenic 35.0%
CACGAAGGTAATTAACATCA+AGG - chr8.3:8186108-8186127 None:intergenic 35.0%
CTATATCATCAACCACAACA+AGG - chr8.3:8186414-8186433 None:intergenic 35.0%
CTGTACAAAAGAAATCCAAG+AGG + chr8.3:8186656-8186675 MS.gene036565:CDS 35.0%
CTTGATGTTAATTACCTTCG+TGG + chr8.3:8186106-8186125 MS.gene036565:CDS 35.0%
GATGACCTATACAAATCGTA+AGG - chr8.3:8186907-8186926 None:intergenic 35.0%
GATGATATAGCTAAGCTTTG+GGG + chr8.3:8186424-8186443 MS.gene036565:CDS 35.0%
GCAATAAACTAATTGGACCA+GGG - chr8.3:8186810-8186829 None:intergenic 35.0%
GTAATTAACATCAAGGGTCA+TGG - chr8.3:8186101-8186120 None:intergenic 35.0%
TGCAATAAACTAATTGGACC+AGG - chr8.3:8186811-8186830 None:intergenic 35.0%
TTAGGTGGAGATAACATTGA+AGG + chr8.3:8186766-8186785 MS.gene036565:CDS 35.0%
TTATTGCATTGGAGTGGAAA+AGG + chr8.3:8186823-8186842 MS.gene036565:CDS 35.0%
TTTAATTCTGATCGTGTTCG+CGG + chr8.3:8186274-8186293 MS.gene036565:CDS 35.0%
TTTAGATTCTGACCTTGTTG+TGG + chr8.3:8186399-8186418 MS.gene036565:CDS 35.0%
! AAGTAGAAGGCAAGATTTTC+TGG - chr8.3:8186175-8186194 None:intergenic 35.0%
! ATCACACGTTGTACATTTTC+TGG - chr8.3:8186376-8186395 None:intergenic 35.0%
!! AAGCCATGTTATTTCAACAC+AGG + chr8.3:8186565-8186584 MS.gene036565:CDS 35.0%
!! TTCTCTTCCACCATTTTTGT+TGG + chr8.3:8186693-8186712 MS.gene036565:CDS 35.0%
!!! CATTTTTGTTGGTTTTGGCA+GGG + chr8.3:8186704-8186723 MS.gene036565:CDS 35.0%
!!! TCCACCATTTTTGTTGGTTT+TGG + chr8.3:8186699-8186718 MS.gene036565:CDS 35.0%
AAATGTAGAAGCTTACACCC+TGG + chr8.3:8186790-8186809 MS.gene036565:CDS 40.0%
AGATGGAACCAACATGGTTT+AGG + chr8.3:8186748-8186767 MS.gene036565:CDS 40.0%
ATGAGCAGAAAGGAAGTAGA+AGG - chr8.3:8186188-8186207 None:intergenic 40.0%
ATGCATTGTGGACCATCTAT+GGG + chr8.3:8186879-8186898 MS.gene036565:CDS 40.0%
CCTGCCAAAACCAACAAAAA+TGG - chr8.3:8186706-8186725 None:intergenic 40.0%
CGTCATGTTTAGATAAGGGA+AGG - chr8.3:8186245-8186264 None:intergenic 40.0%
GAAAAGGTAAACCATGGTTG+AGG + chr8.3:8186839-8186858 MS.gene036565:CDS 40.0%
GATCATAGATGGAACCAACA+TGG + chr8.3:8186742-8186761 MS.gene036565:CDS 40.0%
GCCAAAACCAACAAAAATGG+TGG - chr8.3:8186703-8186722 None:intergenic 40.0%
TAATTACCTTCGTGGAACCA+TGG + chr8.3:8186114-8186133 MS.gene036565:CDS 40.0%
TATCTCCACCTAAACCATGT+TGG - chr8.3:8186759-8186778 None:intergenic 40.0%
!! AAAACAATTTTGGTCGGACC+CGG + chr8.3:8186516-8186535 MS.gene036565:CDS 40.0%
!! TGGTGATGGATGTGGATAAA+TGG + chr8.3:8186593-8186612 MS.gene036565:CDS 40.0%
!!! CCATTTTTGTTGGTTTTGGC+AGG + chr8.3:8186703-8186722 MS.gene036565:CDS 40.0%
AAAAAGAGGGAGGTCAGAAG+AGG - chr8.3:8186011-8186030 None:intergenic 45.0%
AAAAGAGGGAGGTCAGAAGA+GGG - chr8.3:8186010-8186029 None:intergenic 45.0%
AATCGTAAGGAGCCCATAGA+TGG - chr8.3:8186894-8186913 None:intergenic 45.0%
AGACATGGAAGGGAAAGTAG+TGG + chr8.3:8186450-8186469 MS.gene036565:CDS 45.0%
AGGTAAACCATGGTTGAGGT+TGG + chr8.3:8186843-8186862 MS.gene036565:CDS 45.0%
CAACACAGGTGTAATGGTGA+TGG + chr8.3:8186579-8186598 MS.gene036565:CDS 45.0%
CAAGACGGATAGAGGTAATG+GGG - chr8.3:8185973-8185992 None:intergenic 45.0%
CATAGATGGTCCACAATGCA+TGG - chr8.3:8186880-8186899 None:intergenic 45.0%
CATGCATTGTGGACCATCTA+TGG + chr8.3:8186878-8186897 MS.gene036565:CDS 45.0%
CATGGTTGAGGTTGGATTCA+AGG + chr8.3:8186851-8186870 MS.gene036565:CDS 45.0%
CCAAGACGGATAGAGGTAAT+GGG - chr8.3:8185974-8185993 None:intergenic 45.0%
CGTGTAGTTGTCATACTCCT+TGG + chr8.3:8185929-8185948 MS.gene036565:CDS 45.0%
CTTGAATCCAACCTCAACCA+TGG - chr8.3:8186853-8186872 None:intergenic 45.0%
GGAGTGGAAAAGGTAAACCA+TGG + chr8.3:8186833-8186852 MS.gene036565:CDS 45.0%
GGGCTCCTTACGATTTGTAT+AGG + chr8.3:8186899-8186918 MS.gene036565:CDS 45.0%
GTTCTCGCAAAGACGTTTGA+TGG + chr8.3:8186538-8186557 MS.gene036565:CDS 45.0%
TCAAACGTCTTTGCGAGAAC+CGG - chr8.3:8186538-8186557 None:intergenic 45.0%
TGGAACCAACATGGTTTAGG+TGG + chr8.3:8186751-8186770 MS.gene036565:CDS 45.0%
TTCAAGGAAGCCATGCATTG+TGG + chr8.3:8186867-8186886 MS.gene036565:CDS 45.0%
! TTTGGGGTGTAGACATGGAA+GGG + chr8.3:8186440-8186459 MS.gene036565:CDS 45.0%
!! AGGTGTAATGGTGATGGATG+TGG + chr8.3:8186585-8186604 MS.gene036565:CDS 45.0%
!! TAAGCTTTGGGGTGTAGACA+TGG + chr8.3:8186435-8186454 MS.gene036565:CDS 45.0%
CAAACGTCTTTGCGAGAACC+GGG - chr8.3:8186537-8186556 None:intergenic 50.0%
CCCATTACCTCTATCCGTCT+TGG + chr8.3:8185971-8185990 MS.gene036565:CDS 50.0%
GCCAAGACGGATAGAGGTAA+TGG - chr8.3:8185975-8185994 None:intergenic 50.0%
!! CAGGAGCATCATGAGCAGAA+AGG - chr8.3:8186198-8186217 None:intergenic 50.0%
!! CTTTGGGGTGTAGACATGGA+AGG + chr8.3:8186439-8186458 MS.gene036565:CDS 50.0%
CATGGACAACACTGCAGCCA+TGG - chr8.3:8186134-8186153 None:intergenic 55.0%
CGGGGGCTTCACGAAAAAGA+GGG - chr8.3:8186024-8186043 None:intergenic 55.0%
GACAAGGCCAAGACGGATAG+AGG - chr8.3:8185981-8186000 None:intergenic 55.0%
GGGCTTCACGAAAAAGAGGG+AGG - chr8.3:8186021-8186040 None:intergenic 55.0%
TAATGGGGTGGAGGAAGGAC+AGG - chr8.3:8185958-8185977 None:intergenic 55.0%
!! AGAGGTAATGGGGTGGAGGA+AGG - chr8.3:8185963-8185982 None:intergenic 55.0%
!! GACGGATAGAGGTAATGGGG+TGG - chr8.3:8185970-8185989 None:intergenic 55.0%
!! GGATAGAGGTAATGGGGTGG+AGG - chr8.3:8185967-8185986 None:intergenic 55.0%
AGCCACATTCCTCGCCGTTC+CGG - chr8.3:8186051-8186070 None:intergenic 60.0%
CAGAAGAGGGTAGGCGGACA+AGG - chr8.3:8185997-8186016 None:intergenic 60.0%
CTGCAGCCATGGTTCCACGA+AGG - chr8.3:8186123-8186142 None:intergenic 60.0%
GAGGGAGGTCAGAAGAGGGT+AGG - chr8.3:8186006-8186025 None:intergenic 60.0%
GCGGGGGCTTCACGAAAAAG+AGG - chr8.3:8186025-8186044 None:intergenic 60.0%
GGAGGTCAGAAGAGGGTAGG+CGG - chr8.3:8186003-8186022 None:intergenic 60.0%
GTAGGCGGACAAGGCCAAGA+CGG - chr8.3:8185988-8186007 None:intergenic 60.0%
TTCCGGAACGGCGAGGAATG+TGG + chr8.3:8186046-8186065 MS.gene036565:CDS 60.0%
TTCCTCGCCGTTCCGGAAAG+CGG - chr8.3:8186044-8186063 None:intergenic 60.0%
TTCGTGAAGCCCCCGCTTTC+CGG + chr8.3:8186029-8186048 MS.gene036565:CDS 60.0%
GAAGCCCCCGCTTTCCGGAA+CGG + chr8.3:8186034-8186053 MS.gene036565:CDS 65.0%
GGAGGAAGGACAGGAGGCCA+AGG - chr8.3:8185949-8185968 None:intergenic 65.0%
TCCTCGCCGTTCCGGAAAGC+GGG - chr8.3:8186043-8186062 None:intergenic 65.0%
TGGGGTGGAGGAAGGACAGG+AGG - chr8.3:8185955-8185974 None:intergenic 65.0%
CCTCGCCGTTCCGGAAAGCG+GGG - chr8.3:8186042-8186061 None:intergenic 70.0%
CTCGCCGTTCCGGAAAGCGG+GGG - chr8.3:8186041-8186060 None:intergenic 70.0%
CCCCGCTTTCCGGAACGGCG+AGG + chr8.3:8186039-8186058 MS.gene036565:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 8185905 8186948 8185905 ID=MS.gene036565
chr8.3 mRNA 8185905 8186948 8185905 ID=MS.gene036565.t1;Parent=MS.gene036565
chr8.3 exon 8185905 8186948 8185905 ID=MS.gene036565.t1.exon1;Parent=MS.gene036565.t1
chr8.3 CDS 8185905 8186948 8185905 ID=cds.MS.gene036565.t1;Parent=MS.gene036565.t1
Gene Sequence

>MS.gene036565

ATGGTCTTCAGGAGTTTCAATTCTCGTGTAGTTGTCATACTCCTTGGCCTCCTGTCCTTCCTCCACCCCATTACCTCTATCCGTCTTGGCCTTGTCCGCCTACCCTCTTCTGACCTCCCTCTTTTTCGTGAAGCCCCCGCTTTCCGGAACGGCGAGGAATGTGGCTCCACAGAAGCTGATCGTATAAATGTTGCCATGACCCTTGATGTTAATTACCTTCGTGGAACCATGGCTGCAGTGTTGTCCATGTTACAACATTCAACATGTCCAGAAAATCTTGCCTTCTACTTCCTTTCTGCTCATGATGCTCCTGAACTATTCACAAGCATAAAATCAACCTTCCCTTATCTAAACATGACGATTTATCACTTTAATTCTGATCGTGTTCGCGGTAAGATATCAAAGTCAATTAGAAAAGCATTGGATCAACCTTTGAATTATGCAAGGATATATCTTGCAGATACAATACCAGAAAATGTACAACGTGTGATATATTTAGATTCTGACCTTGTTGTGGTTGATGATATAGCTAAGCTTTGGGGTGTAGACATGGAAGGGAAAGTAGTGGCTGCTCCAGAATATTGTCATACAGATTTCACATTGTATTTCACAAAACAATTTTGGTCGGACCCGGTTCTCGCAAAGACGTTTGATGGAAGAAAGCCATGTTATTTCAACACAGGTGTAATGGTGATGGATGTGGATAAATGGAGAAAAGAAAAATATACAGAGAAAGTTGAAGAATGGATGGCTGTACAAAAGAAATCCAAGAGGATATATCATTTGGGTTCTCTTCCACCATTTTTGTTGGTTTTGGCAGGGAATATTAAAGCAGTTGATCATAGATGGAACCAACATGGTTTAGGTGGAGATAACATTGAAGGTAAATGTAGAAGCTTACACCCTGGTCCAATTAGTTTATTGCATTGGAGTGGAAAAGGTAAACCATGGTTGAGGTTGGATTCAAGGAAGCCATGCATTGTGGACCATCTATGGGCTCCTTACGATTTGTATAGGTCATCCAGACACTTTTTTGAAGAATAA
Protein sequence

>MS.gene036565.t1

MVFRSFNSRVVVILLGLLSFLHPITSIRLGLVRLPSSDLPLFREAPAFRNGEECGSTEADRINVAMTLDVNYLRGTMAAVLSMLQHSTCPENLAFYFLSAHDAPELFTSIKSTFPYLNMTIYHFNSDRVRGKISKSIRKALDQPLNYARIYLADTIPENVQRVIYLDSDLVVVDDIAKLWGVDMEGKVVAAPEYCHTDFTLYFTKQFWSDPVLAKTFDGRKPCYFNTGVMVMDVDKWRKEKYTEKVEEWMAVQKKSKRIYHLGSLPPFLLVLAGNIKAVDHRWNQHGLGGDNIEGKCRSLHPGPISLLHWSGKGKPWLRLDSRKPCIVDHLWAPYDLYRSSRHFFEE