Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014725.t1 | XP_003603538.1 | 91.2 | 353 | 22 | 5 | 1 | 351 | 1 | 346 | 1.40E-183 | 652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014725.t1 | Q8LAW2 | 42.3 | 359 | 191 | 6 | 5 | 350 | 16 | 371 | 9.1e-78 | 292.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014725.t1 | G7JCD6 | 91.2 | 353 | 22 | 5 | 1 | 351 | 1 | 346 | 1.0e-183 | 652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049362 | MS.gene014725 | PPI |
| MS.gene31040 | MS.gene014725 | PPI |
| MS.gene014725 | MS.gene013385 | PPI |
| MS.gene06482 | MS.gene014725 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014725.t1 | MTR_3g108860 | 90.652 | 353 | 24 | 4 | 1 | 351 | 1 | 346 | 0.0 | 610 |
| MS.gene014725.t1 | MTR_2g019230 | 34.828 | 379 | 217 | 8 | 1 | 351 | 29 | 405 | 5.31e-74 | 234 |
| MS.gene014725.t1 | MTR_4g114110 | 25.352 | 284 | 191 | 7 | 6 | 274 | 70 | 347 | 1.08e-23 | 101 |
| MS.gene014725.t1 | MTR_8g085600 | 25.000 | 296 | 195 | 7 | 5 | 282 | 65 | 351 | 3.05e-20 | 91.7 |
| MS.gene014725.t1 | MTR_2g008440 | 24.235 | 392 | 204 | 15 | 12 | 314 | 38 | 425 | 2.27e-19 | 89.4 |
| MS.gene014725.t1 | MTR_8g030940 | 25.397 | 252 | 166 | 7 | 17 | 252 | 25 | 270 | 8.70e-17 | 80.9 |
| MS.gene014725.t1 | MTR_3g073640 | 23.056 | 373 | 205 | 11 | 11 | 303 | 37 | 407 | 1.14e-16 | 81.3 |
| MS.gene014725.t1 | MTR_7g095220 | 29.730 | 222 | 116 | 6 | 16 | 208 | 3 | 213 | 1.77e-16 | 79.7 |
| MS.gene014725.t1 | MTR_3g085570 | 25.100 | 251 | 154 | 8 | 11 | 238 | 29 | 268 | 1.14e-15 | 77.8 |
| MS.gene014725.t1 | MTR_8g080370 | 24.615 | 260 | 160 | 9 | 4 | 238 | 36 | 284 | 5.32e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014725.t1 | AT2G24540 | 44.847 | 359 | 182 | 6 | 5 | 350 | 16 | 371 | 4.59e-105 | 313 |
| MS.gene014725.t1 | AT1G30090 | 34.986 | 363 | 213 | 7 | 6 | 351 | 42 | 398 | 3.84e-72 | 229 |
| MS.gene014725.t1 | AT1G55270 | 25.524 | 286 | 190 | 7 | 5 | 274 | 66 | 344 | 1.19e-20 | 92.8 |
| MS.gene014725.t1 | AT1G22040 | 25.132 | 378 | 200 | 13 | 6 | 303 | 32 | 406 | 3.29e-18 | 85.9 |
| MS.gene014725.t1 | AT3G61350 | 23.123 | 333 | 224 | 9 | 2 | 314 | 3 | 323 | 3.45e-18 | 85.1 |
| MS.gene014725.t1 | AT3G61350 | 23.123 | 333 | 224 | 9 | 2 | 314 | 3 | 323 | 3.45e-18 | 85.1 |
| MS.gene014725.t1 | AT1G67480 | 26.045 | 311 | 184 | 12 | 6 | 289 | 28 | 319 | 1.10e-17 | 83.6 |
| MS.gene014725.t1 | AT1G67480 | 26.045 | 311 | 184 | 12 | 6 | 289 | 28 | 319 | 1.10e-17 | 83.6 |
| MS.gene014725.t1 | AT1G67480 | 26.045 | 311 | 184 | 12 | 6 | 289 | 28 | 319 | 1.10e-17 | 83.6 |
| MS.gene014725.t1 | AT3G63220 | 28.866 | 194 | 103 | 7 | 17 | 184 | 11 | 195 | 5.77e-14 | 72.4 |
| MS.gene014725.t1 | AT3G63220 | 28.866 | 194 | 103 | 7 | 17 | 184 | 11 | 195 | 5.77e-14 | 72.4 |
| MS.gene014725.t1 | AT3G63220 | 28.866 | 194 | 103 | 7 | 17 | 184 | 4 | 188 | 6.46e-14 | 72.4 |
| MS.gene014725.t1 | AT1G16250 | 26.667 | 195 | 114 | 5 | 15 | 185 | 6 | 195 | 3.81e-13 | 70.5 |
| MS.gene014725.t1 | AT1G16250 | 26.667 | 195 | 114 | 5 | 15 | 185 | 6 | 195 | 3.81e-13 | 70.5 |
| MS.gene014725.t1 | AT2G44130 | 26.007 | 273 | 150 | 9 | 12 | 235 | 14 | 283 | 3.80e-11 | 64.3 |
| MS.gene014725.t1 | AT1G55270 | 25.359 | 209 | 134 | 6 | 82 | 274 | 16 | 218 | 9.46e-11 | 62.4 |
Find 115 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCCACGTGTCACTTTC+CGG | 0.157848 | 3.1:-86847838 | None:intergenic |
| TAAAGATTGCCATTGGATTT+TGG | 0.198751 | 3.1:-86847545 | None:intergenic |
| GGTTTCTTCATTCCATTTCT+AGG | 0.215079 | 3.1:-86848150 | None:intergenic |
| GATTTACCGGTGATCATTTC+CGG | 0.241893 | 3.1:-86847745 | None:intergenic |
| TACGCTCTGTTTCTTCTTCA+TGG | 0.245069 | 3.1:+86847425 | MS.gene014725:CDS |
| CATGGTTTGAAAGTGGTTAT+TGG | 0.295634 | 3.1:+86848216 | MS.gene014725:CDS |
| TTCGCGGCAGAGAAAGTTAA+AGG | 0.307053 | 3.1:+86847772 | MS.gene014725:CDS |
| GAAGGTGACGTGGCAGGTTT+TGG | 0.315226 | 3.1:+86848278 | MS.gene014725:CDS |
| ACCGTTTATTGCCAAGGGTT+TGG | 0.321805 | 3.1:+86848170 | MS.gene014725:CDS |
| GAAGATAGGTGCAAAATTTA+CGG | 0.323814 | 3.1:+86847855 | MS.gene014725:CDS |
| GAGCGTACTAAAGGTTGATA+TGG | 0.325650 | 3.1:-86847409 | None:intergenic |
| CAAATCTCTGCTATTTCGTT+TGG | 0.329579 | 3.1:-86847367 | None:intergenic |
| TCTTCCACGTGTCACTTTCC+GGG | 0.348764 | 3.1:-86847837 | None:intergenic |
| GATAATTCTCCAAATGCTTC+TGG | 0.350820 | 3.1:-86848306 | None:intergenic |
| GAGCATGAAGAACTTATTCC+AGG | 0.356307 | 3.1:+86847340 | MS.gene014725:CDS |
| GGTGGTGGCCGTTTGCAGTT+AGG | 0.382464 | 3.1:+86847938 | MS.gene014725:CDS |
| GAAAGTGACACGTGGAAGAT+AGG | 0.385797 | 3.1:+86847841 | MS.gene014725:CDS |
| TATTGACAGCTAAAACAAAA+AGG | 0.392366 | 3.1:-86847513 | None:intergenic |
| TTGGAGGGACCAGAAGCATT+TGG | 0.398612 | 3.1:+86848297 | MS.gene014725:CDS |
| TCCAAACCCTTGGCAATAAA+CGG | 0.403427 | 3.1:-86848171 | None:intergenic |
| GATACCGGAAGTTGATTTAC+CGG | 0.412559 | 3.1:+86848071 | MS.gene014725:CDS |
| TGCAGTTAGGCCGAGAGGTT+GGG | 0.429553 | 3.1:+86847951 | MS.gene014725:CDS |
| AAGATAGGTGCAAAATTTAC+GGG | 0.436440 | 3.1:+86847856 | MS.gene014725:CDS |
| GGAATGAAAGACGGTTGGAC+AGG | 0.439859 | 3.1:+86848015 | MS.gene014725:CDS |
| TAGATCCTTCTTCTAGCCGT+TGG | 0.444297 | 3.1:+86847566 | MS.gene014725:CDS |
| TTGCAGTTAGGCCGAGAGGT+TGG | 0.449714 | 3.1:+86847950 | MS.gene014725:CDS |
| GCTATTTCGTTTGGTAAACC+TGG | 0.453394 | 3.1:-86847358 | None:intergenic |
| CACCGTCGACCATTTGTTAA+CGG | 0.453716 | 3.1:-86847722 | None:intergenic |
| TTCTTTGAGAGTAGAAAAGA+AGG | 0.454666 | 3.1:-86847466 | None:intergenic |
| AGGTATGAGACGGTGGTTAA+CGG | 0.455533 | 3.1:+86847889 | MS.gene014725:CDS |
| GGTGAGAGGTTACCTAGAAA+TGG | 0.460321 | 3.1:+86848138 | MS.gene014725:CDS |
| TACACCACTTGGCAACTAGA+AGG | 0.462764 | 3.1:-86848330 | None:intergenic |
| TCCGCTTCGTTGCCGCGTCA+CGG | 0.464677 | 3.1:+86847646 | MS.gene014725:CDS |
| TTCACCGGTAAATCAACTTC+CGG | 0.467444 | 3.1:-86848075 | None:intergenic |
| TACTCAGAAAATGGCGATTG+TGG | 0.477617 | 3.1:+86847294 | None:intergenic |
| ACGGTTGGTGAGAGCGGGAC+GGG | 0.480257 | 3.1:+86847805 | MS.gene014725:CDS |
| ACCGCACCACCGTTAACAAA+TGG | 0.481027 | 3.1:+86847713 | MS.gene014725:CDS |
| TAACAAATGGTCGACGGTGC+CGG | 0.485171 | 3.1:+86847726 | MS.gene014725:CDS |
| TGCCGCGAAGAATGATTTAC+CGG | 0.486129 | 3.1:-86847758 | None:intergenic |
| TAAGTGTTACGGTGTGTGGG+AGG | 0.486907 | 3.1:+86848040 | MS.gene014725:CDS |
| AAGTGTTACGGTGTGTGGGA+GGG | 0.490678 | 3.1:+86848041 | MS.gene014725:CDS |
| CAATTCAAGCATACACCACT+TGG | 0.496168 | 3.1:-86848341 | None:intergenic |
| GAAGCGGAGGTGAAGGAGGT+TGG | 0.504773 | 3.1:-86847631 | None:intergenic |
| AAGGATCTAAAGATTGCCAT+TGG | 0.508749 | 3.1:-86847552 | None:intergenic |
| AAGAAACCGTTTATTGCCAA+GGG | 0.520857 | 3.1:+86848165 | MS.gene014725:CDS |
| TCGTTTAAGAGAGGCATATG+AGG | 0.521703 | 3.1:-86847598 | None:intergenic |
| GGAAGTTGATTTACCGGTGA+AGG | 0.522601 | 3.1:+86848077 | MS.gene014725:CDS |
| GGGGTAAGTGTTACGGTGTG+TGG | 0.522882 | 3.1:+86848036 | MS.gene014725:CDS |
| GCGGTAAACGAATGTCGAAC+TGG | 0.525550 | 3.1:-86847695 | None:intergenic |
| GAAGAAACAGAGCGTACTAA+AGG | 0.528743 | 3.1:-86847418 | None:intergenic |
| GTTTATTGCCAAGGGTTTGG+AGG | 0.529645 | 3.1:+86848173 | MS.gene014725:CDS |
| CGGCAACGAAGCGGAGGTGA+AGG | 0.531861 | 3.1:-86847638 | None:intergenic |
| TCGTGACGGTTGGTGAGAGC+GGG | 0.534842 | 3.1:+86847800 | MS.gene014725:CDS |
| ATAAACCAACGGCTAGAAGA+AGG | 0.536971 | 3.1:-86847571 | None:intergenic |
| TTGGACAGGGGTAAGTGTTA+CGG | 0.538819 | 3.1:+86848029 | MS.gene014725:CDS |
| AAGAATATCTTTCCGTGACG+CGG | 0.542517 | 3.1:-86847658 | None:intergenic |
| ACTTCATCGTAAACCTTCAC+CGG | 0.544423 | 3.1:-86848090 | None:intergenic |
| GGCGGTGTGTGGGTGGTGAG+AGG | 0.544504 | 3.1:+86848124 | MS.gene014725:CDS |
| ACTAAAGGTTGATATGGGTA+AGG | 0.550208 | 3.1:-86847403 | None:intergenic |
| ATGAGAGAAGGAATGAAAGA+CGG | 0.553731 | 3.1:+86848006 | MS.gene014725:CDS |
| ATCGTGACGGTTGGTGAGAG+CGG | 0.553977 | 3.1:+86847799 | MS.gene014725:CDS |
| CCTCTCGGCCTAACTGCAAA+CGG | 0.554865 | 3.1:-86847946 | None:intergenic |
| TGGTGTGAAGGTGACGTGGC+AGG | 0.557744 | 3.1:+86848272 | MS.gene014725:CDS |
| TGATGATGTGTGTGGTGTGA+AGG | 0.559228 | 3.1:+86848260 | MS.gene014725:CDS |
| GAAGAAACCGTTTATTGCCA+AGG | 0.559645 | 3.1:+86848164 | MS.gene014725:CDS |
| CGAATCTATGTGGTGTGGCA+TGG | 0.565032 | 3.1:+86848198 | MS.gene014725:CDS |
| GAATGACACGTGGCGGTGTG+TGG | 0.565903 | 3.1:+86848113 | MS.gene014725:CDS |
| GAGAAGGAATGAAAGACGGT+TGG | 0.568706 | 3.1:+86848010 | MS.gene014725:CDS |
| GGGTAAGTGTTACGGTGTGT+GGG | 0.571923 | 3.1:+86848037 | MS.gene014725:CDS |
| AGCGTACTAAAGGTTGATAT+GGG | 0.572698 | 3.1:-86847408 | None:intergenic |
| GACACGTGGCGGTGTGTGGG+TGG | 0.572857 | 3.1:+86848117 | MS.gene014725:CDS |
| GATTCGATCCTCCAAACCCT+TGG | 0.573895 | 3.1:-86848181 | None:intergenic |
| CACCGGTAAATCATTCTTCG+CGG | 0.577544 | 3.1:+86847756 | MS.gene014725:CDS |
| GAATGAAAGACGGTTGGACA+GGG | 0.578414 | 3.1:+86848016 | MS.gene014725:CDS |
| TCTTTGAGAGTAGAAAAGAA+GGG | 0.582165 | 3.1:-86847465 | None:intergenic |
| GGTGTGGCATGGTTTGAAAG+TGG | 0.583894 | 3.1:+86848209 | MS.gene014725:CDS |
| CAACGAAGCGGAGGTGAAGG+AGG | 0.592725 | 3.1:-86847635 | None:intergenic |
| AATGACACGTGGCGGTGTGT+GGG | 0.599607 | 3.1:+86848114 | MS.gene014725:CDS |
| GACGGTTGGTGAGAGCGGGA+CGG | 0.607968 | 3.1:+86847804 | MS.gene014725:CDS |
| AGATGTACGTAACGGAAGGA+TGG | 0.610516 | 3.1:+86847917 | MS.gene014725:CDS |
| CAGTAACCTCCAAAATCCAA+TGG | 0.611172 | 3.1:+86847536 | MS.gene014725:CDS |
| CACGGAAAGATATTCTTCAT+CGG | 0.614247 | 3.1:+86847664 | MS.gene014725:CDS |
| TCCGTGACGCGGCAACGAAG+CGG | 0.615722 | 3.1:-86847647 | None:intergenic |
| AATTCGTATACCCAACCTCT+CGG | 0.616541 | 3.1:-86847961 | None:intergenic |
| ACGTGGAGTGAGATGAGAGA+AGG | 0.616701 | 3.1:+86847994 | MS.gene014725:CDS |
| CCGTTTGCAGTTAGGCCGAG+AGG | 0.618275 | 3.1:+86847946 | MS.gene014725:CDS |
| ACGGTGCCGGAAATGATCAC+CGG | 0.625268 | 3.1:+86847739 | MS.gene014725:CDS |
| ATCACCTTCTAGTTGCCAAG+TGG | 0.629460 | 3.1:+86848326 | MS.gene014725:CDS |
| ACCATTTGTTAACGGTGGTG+CGG | 0.630509 | 3.1:-86847714 | None:intergenic |
| GGGAAGATGTACGTAACGGA+AGG | 0.632145 | 3.1:+86847913 | MS.gene014725:CDS |
| GTGACGCGGCAACGAAGCGG+AGG | 0.640558 | 3.1:-86847644 | None:intergenic |
| CAAACTGCATCGTTTAAGAG+AGG | 0.644962 | 3.1:-86847607 | None:intergenic |
| CACCGTTAACAAATGGTCGA+CGG | 0.645344 | 3.1:+86847720 | MS.gene014725:CDS |
| ATGAGACGGTGGTTAACGGA+GGG | 0.653329 | 3.1:+86847893 | MS.gene014725:CDS |
| GTTAAGGAGGTATGAGACGG+TGG | 0.653395 | 3.1:+86847882 | MS.gene014725:CDS |
| CGTCGACCATTTGTTAACGG+TGG | 0.654231 | 3.1:-86847719 | None:intergenic |
| ACGTAACGGAAGGATGGTGG+TGG | 0.655518 | 3.1:+86847923 | MS.gene014725:CDS |
| TATGAGGAAGTATAAACCAA+CGG | 0.656671 | 3.1:-86847582 | None:intergenic |
| TGTACGTAACGGAAGGATGG+TGG | 0.666986 | 3.1:+86847920 | MS.gene014725:CDS |
| TTTGGAGGATCGAATCTATG+TGG | 0.667274 | 3.1:+86848188 | MS.gene014725:CDS |
| CGGGACGGGAATCTACGACC+CGG | 0.669592 | 3.1:+86847819 | MS.gene014725:CDS |
| TGTGTGGTGTGAAGGTGACG+TGG | 0.675745 | 3.1:+86848268 | MS.gene014725:CDS |
| GATGTTGATGATGATGTGTG+TGG | 0.678859 | 3.1:+86848252 | MS.gene014725:CDS |
| TATGAGACGGTGGTTAACGG+AGG | 0.682766 | 3.1:+86847892 | MS.gene014725:CDS |
| GGAGTTAAGGAGGTATGAGA+CGG | 0.683682 | 3.1:+86847879 | MS.gene014725:CDS |
| AATGAAAGACGGTTGGACAG+GGG | 0.686724 | 3.1:+86848017 | MS.gene014725:CDS |
| AGATAGGTGCAAAATTTACG+GGG | 0.690564 | 3.1:+86847857 | MS.gene014725:CDS |
| CGGAGGGAAGATGTACGTAA+CGG | 0.690616 | 3.1:+86847909 | MS.gene014725:CDS |
| GGAAAGATATTCTTCATCGG+AGG | 0.700314 | 3.1:+86847667 | MS.gene014725:CDS |
| ACGAATTAGAGAGTGACACG+TGG | 0.729613 | 3.1:+86847977 | MS.gene014725:CDS |
| GATAGGTGCAAAATTTACGG+GGG | 0.736944 | 3.1:+86847858 | MS.gene014725:CDS |
| ACGATGAAGTGAATGACACG+TGG | 0.739828 | 3.1:+86848103 | MS.gene014725:CDS |
| ACGACCCGGAAAGTGACACG+TGG | 0.741478 | 3.1:+86847833 | MS.gene014725:CDS |
| AGGATCGAATCTATGTGGTG+TGG | 0.742706 | 3.1:+86848193 | MS.gene014725:CDS |
| ATGAAGTGAATGACACGTGG+CGG | 0.792080 | 3.1:+86848106 | MS.gene014725:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATTGACAGCTAAAACAAAA+AGG | - | chr3.1:86847516-86847535 | None:intergenic | 25.0% |
| AAGATAGGTGCAAAATTTAC+GGG | + | chr3.1:86847856-86847875 | MS.gene014725:CDS | 30.0% | |
| AGTTAAAGGAAAAATCGTGA+CGG | + | chr3.1:86847786-86847805 | MS.gene014725:CDS | 30.0% | |
| GAAGATAGGTGCAAAATTTA+CGG | + | chr3.1:86847855-86847874 | MS.gene014725:CDS | 30.0% | |
| ! | TAAAGATTGCCATTGGATTT+TGG | - | chr3.1:86847548-86847567 | None:intergenic | 30.0% |
| ! | TATGAGGAAGTATAAACCAA+CGG | - | chr3.1:86847585-86847604 | None:intergenic | 30.0% |
| ! | TCTTTGAGAGTAGAAAAGAA+GGG | - | chr3.1:86847468-86847487 | None:intergenic | 30.0% |
| ! | TTCTTTGAGAGTAGAAAAGA+AGG | - | chr3.1:86847469-86847488 | None:intergenic | 30.0% |
| AAGAAACCGTTTATTGCCAA+GGG | + | chr3.1:86848165-86848184 | MS.gene014725:CDS | 35.0% | |
| AAGGATCTAAAGATTGCCAT+TGG | - | chr3.1:86847555-86847574 | None:intergenic | 35.0% | |
| ACAGCTAAAACAAAAAGGTG+TGG | - | chr3.1:86847511-86847530 | None:intergenic | 35.0% | |
| AGATAGGTGCAAAATTTACG+GGG | + | chr3.1:86847857-86847876 | MS.gene014725:CDS | 35.0% | |
| ATGAGAGAAGGAATGAAAGA+CGG | + | chr3.1:86848006-86848025 | MS.gene014725:CDS | 35.0% | |
| CACGGAAAGATATTCTTCAT+CGG | + | chr3.1:86847664-86847683 | MS.gene014725:CDS | 35.0% | |
| CATGGTTTGAAAGTGGTTAT+TGG | + | chr3.1:86848216-86848235 | MS.gene014725:CDS | 35.0% | |
| GATAATTCTCCAAATGCTTC+TGG | - | chr3.1:86848309-86848328 | None:intergenic | 35.0% | |
| GGTTTCTTCATTCCATTTCT+AGG | - | chr3.1:86848153-86848172 | None:intergenic | 35.0% | |
| !! | ACTAAAGGTTGATATGGGTA+AGG | - | chr3.1:86847406-86847425 | None:intergenic | 35.0% |
| !! | AGCGTACTAAAGGTTGATAT+GGG | - | chr3.1:86847411-86847430 | None:intergenic | 35.0% |
| !! | CAAATCTCTGCTATTTCGTT+TGG | - | chr3.1:86847370-86847389 | None:intergenic | 35.0% |
| AAAGGAAAAATCGTGACGGT+TGG | + | chr3.1:86847790-86847809 | MS.gene014725:CDS | 40.0% | |
| AAGAATATCTTTCCGTGACG+CGG | - | chr3.1:86847661-86847680 | None:intergenic | 40.0% | |
| AATTCGTATACCCAACCTCT+CGG | - | chr3.1:86847964-86847983 | None:intergenic | 40.0% | |
| ACTTCATCGTAAACCTTCAC+CGG | - | chr3.1:86848093-86848112 | None:intergenic | 40.0% | |
| ATAAACCAACGGCTAGAAGA+AGG | - | chr3.1:86847574-86847593 | None:intergenic | 40.0% | |
| CAAAATTTACGGGGGAGTTA+AGG | + | chr3.1:86847866-86847885 | MS.gene014725:CDS | 40.0% | |
| CAAACTGCATCGTTTAAGAG+AGG | - | chr3.1:86847610-86847629 | None:intergenic | 40.0% | |
| CAGTAACCTCCAAAATCCAA+TGG | + | chr3.1:86847536-86847555 | MS.gene014725:CDS | 40.0% | |
| GAAGAAACAGAGCGTACTAA+AGG | - | chr3.1:86847421-86847440 | None:intergenic | 40.0% | |
| GAAGAAACCGTTTATTGCCA+AGG | + | chr3.1:86848164-86848183 | MS.gene014725:CDS | 40.0% | |
| GAGCATGAAGAACTTATTCC+AGG | + | chr3.1:86847340-86847359 | MS.gene014725:CDS | 40.0% | |
| GATAGGTGCAAAATTTACGG+GGG | + | chr3.1:86847858-86847877 | MS.gene014725:CDS | 40.0% | |
| GATTTACCGGTGATCATTTC+CGG | - | chr3.1:86847748-86847767 | None:intergenic | 40.0% | |
| GGAAAGATATTCTTCATCGG+AGG | + | chr3.1:86847667-86847686 | MS.gene014725:CDS | 40.0% | |
| TCCAAACCCTTGGCAATAAA+CGG | - | chr3.1:86848174-86848193 | None:intergenic | 40.0% | |
| TTCACCGGTAAATCAACTTC+CGG | - | chr3.1:86848078-86848097 | None:intergenic | 40.0% | |
| TTTGGAGGATCGAATCTATG+TGG | + | chr3.1:86848188-86848207 | MS.gene014725:CDS | 40.0% | |
| ! | AGATTGCCATTGGATTTTGG+AGG | - | chr3.1:86847545-86847564 | None:intergenic | 40.0% |
| ! | GATACCGGAAGTTGATTTAC+CGG | + | chr3.1:86848071-86848090 | MS.gene014725:CDS | 40.0% |
| ! | GCTATTTCGTTTGGTAAACC+TGG | - | chr3.1:86847361-86847380 | None:intergenic | 40.0% |
| ! | TACGCTCTGTTTCTTCTTCA+TGG | + | chr3.1:86847425-86847444 | MS.gene014725:CDS | 40.0% |
| ! | TCGTTTAAGAGAGGCATATG+AGG | - | chr3.1:86847601-86847620 | None:intergenic | 40.0% |
| !! | GAGCGTACTAAAGGTTGATA+TGG | - | chr3.1:86847412-86847431 | None:intergenic | 40.0% |
| !! | GATGTTGATGATGATGTGTG+TGG | + | chr3.1:86848252-86848271 | MS.gene014725:CDS | 40.0% |
| !! | TGGGAGGGTTTTAATGATAC+CGG | + | chr3.1:86848056-86848075 | MS.gene014725:CDS | 40.0% |
| AATGAAAGACGGTTGGACAG+GGG | + | chr3.1:86848017-86848036 | MS.gene014725:CDS | 45.0% | |
| AATTTACGGGGGAGTTAAGG+AGG | + | chr3.1:86847869-86847888 | MS.gene014725:CDS | 45.0% | |
| ACCGTTTATTGCCAAGGGTT+TGG | + | chr3.1:86848170-86848189 | MS.gene014725:CDS | 45.0% | |
| ACGAATTAGAGAGTGACACG+TGG | + | chr3.1:86847977-86847996 | MS.gene014725:CDS | 45.0% | |
| ACGATGAAGTGAATGACACG+TGG | + | chr3.1:86848103-86848122 | MS.gene014725:CDS | 45.0% | |
| AGGATCGAATCTATGTGGTG+TGG | + | chr3.1:86848193-86848212 | MS.gene014725:CDS | 45.0% | |
| AGGTATGAGACGGTGGTTAA+CGG | + | chr3.1:86847889-86847908 | MS.gene014725:CDS | 45.0% | |
| ATGAAGTGAATGACACGTGG+CGG | + | chr3.1:86848106-86848125 | MS.gene014725:CDS | 45.0% | |
| CACCGGTAAATCATTCTTCG+CGG | + | chr3.1:86847756-86847775 | MS.gene014725:CDS | 45.0% | |
| CACCGTTAACAAATGGTCGA+CGG | + | chr3.1:86847720-86847739 | MS.gene014725:CDS | 45.0% | |
| GAAAGTGACACGTGGAAGAT+AGG | + | chr3.1:86847841-86847860 | MS.gene014725:CDS | 45.0% | |
| GAATGAAAGACGGTTGGACA+GGG | + | chr3.1:86848016-86848035 | MS.gene014725:CDS | 45.0% | |
| GAGAAGGAATGAAAGACGGT+TGG | + | chr3.1:86848010-86848029 | MS.gene014725:CDS | 45.0% | |
| GGTGAGAGGTTACCTAGAAA+TGG | + | chr3.1:86848138-86848157 | MS.gene014725:CDS | 45.0% | |
| GTTTATTGCCAAGGGTTTGG+AGG | + | chr3.1:86848173-86848192 | MS.gene014725:CDS | 45.0% | |
| TACACCACTTGGCAACTAGA+AGG | - | chr3.1:86848333-86848352 | None:intergenic | 45.0% | |
| TAGATCCTTCTTCTAGCCGT+TGG | + | chr3.1:86847566-86847585 | MS.gene014725:CDS | 45.0% | |
| TGCCGCGAAGAATGATTTAC+CGG | - | chr3.1:86847761-86847780 | None:intergenic | 45.0% | |
| TTCGCGGCAGAGAAAGTTAA+AGG | + | chr3.1:86847772-86847791 | MS.gene014725:CDS | 45.0% | |
| TTGGACAGGGGTAAGTGTTA+CGG | + | chr3.1:86848029-86848048 | MS.gene014725:CDS | 45.0% | |
| ! | ACCATTTGTTAACGGTGGTG+CGG | - | chr3.1:86847717-86847736 | None:intergenic | 45.0% |
| ! | AGATGTACGTAACGGAAGGA+TGG | + | chr3.1:86847917-86847936 | MS.gene014725:CDS | 45.0% |
| ! | ATCACCTTCTAGTTGCCAAG+TGG | + | chr3.1:86848326-86848345 | MS.gene014725:CDS | 45.0% |
| ! | CACCGTCGACCATTTGTTAA+CGG | - | chr3.1:86847725-86847744 | None:intergenic | 45.0% |
| ! | GGAAGTTGATTTACCGGTGA+AGG | + | chr3.1:86848077-86848096 | MS.gene014725:CDS | 45.0% |
| ! | GGAGTTAAGGAGGTATGAGA+CGG | + | chr3.1:86847879-86847898 | MS.gene014725:CDS | 45.0% |
| ! | TGATGATGTGTGTGGTGTGA+AGG | + | chr3.1:86848260-86848279 | MS.gene014725:CDS | 45.0% |
| !! | ATCTTCCACGTGTCACTTTC+CGG | - | chr3.1:86847841-86847860 | None:intergenic | 45.0% |
| AAGTGTTACGGTGTGTGGGA+GGG | + | chr3.1:86848041-86848060 | MS.gene014725:CDS | 50.0% | |
| ACCGCACCACCGTTAACAAA+TGG | + | chr3.1:86847713-86847732 | MS.gene014725:CDS | 50.0% | |
| ACGTGGAGTGAGATGAGAGA+AGG | + | chr3.1:86847994-86848013 | MS.gene014725:CDS | 50.0% | |
| ATGAGACGGTGGTTAACGGA+GGG | + | chr3.1:86847893-86847912 | MS.gene014725:CDS | 50.0% | |
| CGAATCTATGTGGTGTGGCA+TGG | + | chr3.1:86848198-86848217 | MS.gene014725:CDS | 50.0% | |
| CGGAGGGAAGATGTACGTAA+CGG | + | chr3.1:86847909-86847928 | MS.gene014725:CDS | 50.0% | |
| GATTCGATCCTCCAAACCCT+TGG | - | chr3.1:86848184-86848203 | None:intergenic | 50.0% | |
| GCGGTAAACGAATGTCGAAC+TGG | - | chr3.1:86847698-86847717 | None:intergenic | 50.0% | |
| GGAATGAAAGACGGTTGGAC+AGG | + | chr3.1:86848015-86848034 | MS.gene014725:CDS | 50.0% | |
| GGGTAAGTGTTACGGTGTGT+GGG | + | chr3.1:86848037-86848056 | MS.gene014725:CDS | 50.0% | |
| GGTGTGGCATGGTTTGAAAG+TGG | + | chr3.1:86848209-86848228 | MS.gene014725:CDS | 50.0% | |
| TAACAAATGGTCGACGGTGC+CGG | + | chr3.1:86847726-86847745 | MS.gene014725:CDS | 50.0% | |
| TAAGTGTTACGGTGTGTGGG+AGG | + | chr3.1:86848040-86848059 | MS.gene014725:CDS | 50.0% | |
| TATGAGACGGTGGTTAACGG+AGG | + | chr3.1:86847892-86847911 | MS.gene014725:CDS | 50.0% | |
| ! | CGTCGACCATTTGTTAACGG+TGG | - | chr3.1:86847722-86847741 | None:intergenic | 50.0% |
| ! | GGGAAGATGTACGTAACGGA+AGG | + | chr3.1:86847913-86847932 | MS.gene014725:CDS | 50.0% |
| ! | GTTAAGGAGGTATGAGACGG+TGG | + | chr3.1:86847882-86847901 | MS.gene014725:CDS | 50.0% |
| ! | TGTACGTAACGGAAGGATGG+TGG | + | chr3.1:86847920-86847939 | MS.gene014725:CDS | 50.0% |
| !! | TCTTCCACGTGTCACTTTCC+GGG | - | chr3.1:86847840-86847859 | None:intergenic | 50.0% |
| !! | TTGGAGGGACCAGAAGCATT+TGG | + | chr3.1:86848297-86848316 | MS.gene014725:CDS | 50.0% |
| AATGACACGTGGCGGTGTGT+GGG | + | chr3.1:86848114-86848133 | MS.gene014725:CDS | 55.0% | |
| CCTCTCGGCCTAACTGCAAA+CGG | - | chr3.1:86847949-86847968 | None:intergenic | 55.0% | |
| GGGGTAAGTGTTACGGTGTG+TGG | + | chr3.1:86848036-86848055 | MS.gene014725:CDS | 55.0% | |
| TGCAGTTAGGCCGAGAGGTT+GGG | + | chr3.1:86847951-86847970 | MS.gene014725:CDS | 55.0% | |
| TGTGTGGTGTGAAGGTGACG+TGG | + | chr3.1:86848268-86848287 | MS.gene014725:CDS | 55.0% | |
| TTGCAGTTAGGCCGAGAGGT+TGG | + | chr3.1:86847950-86847969 | MS.gene014725:CDS | 55.0% | |
| ! | ACGGTGCCGGAAATGATCAC+CGG | + | chr3.1:86847739-86847758 | MS.gene014725:CDS | 55.0% |
| ! | ACGTAACGGAAGGATGGTGG+TGG | + | chr3.1:86847923-86847942 | MS.gene014725:CDS | 55.0% |
| ! | GAAGGTGACGTGGCAGGTTT+TGG | + | chr3.1:86848278-86848297 | MS.gene014725:CDS | 55.0% |
| !! | ATCGTGACGGTTGGTGAGAG+CGG | + | chr3.1:86847799-86847818 | MS.gene014725:CDS | 55.0% |
| !!! | GTGACGTGGCAGGTTTTGGA+GGG | + | chr3.1:86848282-86848301 | MS.gene014725:CDS | 55.0% |
| ACGACCCGGAAAGTGACACG+TGG | + | chr3.1:86847833-86847852 | MS.gene014725:CDS | 60.0% | |
| CAACGAAGCGGAGGTGAAGG+AGG | - | chr3.1:86847638-86847657 | None:intergenic | 60.0% | |
| CCGTTTGCAGTTAGGCCGAG+AGG | + | chr3.1:86847946-86847965 | MS.gene014725:CDS | 60.0% | |
| GAAGCGGAGGTGAAGGAGGT+TGG | - | chr3.1:86847634-86847653 | None:intergenic | 60.0% | |
| GAATGACACGTGGCGGTGTG+TGG | + | chr3.1:86848113-86848132 | MS.gene014725:CDS | 60.0% | |
| TGGTGTGAAGGTGACGTGGC+AGG | + | chr3.1:86848272-86848291 | MS.gene014725:CDS | 60.0% | |
| ! | GGTGGTGGCCGTTTGCAGTT+AGG | + | chr3.1:86847938-86847957 | MS.gene014725:CDS | 60.0% |
| !! | GGTGACGTGGCAGGTTTTGG+AGG | + | chr3.1:86848281-86848300 | MS.gene014725:CDS | 60.0% |
| !! | TCGTGACGGTTGGTGAGAGC+GGG | + | chr3.1:86847800-86847819 | MS.gene014725:CDS | 60.0% |
| CGGCAACGAAGCGGAGGTGA+AGG | - | chr3.1:86847641-86847660 | None:intergenic | 65.0% | |
| CGGGACGGGAATCTACGACC+CGG | + | chr3.1:86847819-86847838 | MS.gene014725:CDS | 65.0% | |
| TCCGCTTCGTTGCCGCGTCA+CGG | + | chr3.1:86847646-86847665 | MS.gene014725:CDS | 65.0% | |
| TCCGTGACGCGGCAACGAAG+CGG | - | chr3.1:86847650-86847669 | None:intergenic | 65.0% | |
| !! | ACGGTTGGTGAGAGCGGGAC+GGG | + | chr3.1:86847805-86847824 | MS.gene014725:CDS | 65.0% |
| !! | GACGGTTGGTGAGAGCGGGA+CGG | + | chr3.1:86847804-86847823 | MS.gene014725:CDS | 65.0% |
| GACACGTGGCGGTGTGTGGG+TGG | + | chr3.1:86848117-86848136 | MS.gene014725:CDS | 70.0% | |
| GGCGGTGTGTGGGTGGTGAG+AGG | + | chr3.1:86848124-86848143 | MS.gene014725:CDS | 70.0% | |
| GTGACGCGGCAACGAAGCGG+AGG | - | chr3.1:86847647-86847666 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86847304 | 86848359 | 86847304 | ID=MS.gene014725 |
| chr3.1 | mRNA | 86847304 | 86848359 | 86847304 | ID=MS.gene014725.t1;Parent=MS.gene014725 |
| chr3.1 | exon | 86847304 | 86848359 | 86847304 | ID=MS.gene014725.t1.exon1;Parent=MS.gene014725.t1 |
| chr3.1 | CDS | 86847304 | 86848359 | 86847304 | ID=cds.MS.gene014725.t1;Parent=MS.gene014725.t1 |
| Gene Sequence |
| Protein sequence |
