Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049362.t1 | XP_003602483.1 | 91 | 357 | 31 | 1 | 1 | 357 | 1 | 356 | 5.40E-154 | 553.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049362.t1 | Q9SJ04 | 48.2 | 357 | 167 | 6 | 7 | 352 | 18 | 367 | 1.7e-79 | 297.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049362.t1 | G7JAA2 | 91.0 | 357 | 31 | 1 | 1 | 357 | 1 | 356 | 3.9e-154 | 553.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049362 | MS.gene06482 | 0.872878 | 2.27E-67 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene049362 | MS.gene073014 | PPI |
MS.gene049362 | MS.gene014725 | PPI |
MS.gene049362 | MS.gene40382 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049362.t1 | MTR_3g094850 | 97.207 | 358 | 7 | 2 | 1 | 357 | 1 | 356 | 0.0 | 708 |
MS.gene049362.t1 | MTR_8g030940 | 30.337 | 267 | 156 | 8 | 4 | 250 | 20 | 276 | 1.39e-27 | 111 |
MS.gene049362.t1 | MTR_4g114110 | 30.225 | 311 | 193 | 12 | 2 | 294 | 74 | 378 | 5.07e-25 | 105 |
MS.gene049362.t1 | MTR_8g085600 | 28.289 | 304 | 194 | 10 | 9 | 294 | 77 | 374 | 7.60e-25 | 105 |
MS.gene049362.t1 | MTR_2g019230 | 29.252 | 294 | 179 | 11 | 9 | 280 | 52 | 338 | 3.12e-24 | 102 |
MS.gene049362.t1 | MTR_3g073640 | 24.638 | 345 | 181 | 8 | 4 | 270 | 38 | 381 | 1.88e-21 | 95.5 |
MS.gene049362.t1 | MTR_7g066320 | 93.478 | 46 | 1 | 1 | 1 | 46 | 32 | 75 | 1.73e-19 | 82.0 |
MS.gene049362.t1 | MTR_8g080370 | 27.848 | 237 | 151 | 7 | 4 | 224 | 46 | 278 | 1.65e-18 | 86.3 |
MS.gene049362.t1 | MTR_2g008440 | 24.207 | 347 | 183 | 7 | 4 | 270 | 38 | 384 | 1.99e-18 | 86.7 |
MS.gene049362.t1 | MTR_3g085570 | 28.829 | 222 | 143 | 7 | 5 | 217 | 31 | 246 | 2.33e-16 | 79.7 |
MS.gene049362.t1 | MTR_2g094093 | 25.723 | 311 | 195 | 11 | 6 | 290 | 17 | 317 | 3.10e-16 | 79.3 |
MS.gene049362.t1 | MTR_7g095220 | 30.612 | 196 | 115 | 5 | 7 | 186 | 2 | 192 | 1.26e-15 | 77.4 |
MS.gene049362.t1 | MTR_3g108860 | 24.221 | 289 | 181 | 11 | 6 | 277 | 14 | 281 | 1.55e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049362.t1 | AT2G21950 | 55.462 | 357 | 141 | 7 | 7 | 352 | 18 | 367 | 3.26e-137 | 395 |
MS.gene049362.t1 | AT4G39550 | 38.320 | 381 | 194 | 12 | 5 | 354 | 19 | 389 | 5.46e-71 | 227 |
MS.gene049362.t1 | AT4G39580 | 35.561 | 374 | 204 | 13 | 2 | 351 | 9 | 369 | 9.67e-64 | 207 |
MS.gene049362.t1 | AT4G39240 | 33.983 | 359 | 203 | 10 | 13 | 357 | 37 | 375 | 7.17e-60 | 197 |
MS.gene049362.t1 | AT5G49000 | 35.165 | 364 | 205 | 14 | 11 | 357 | 23 | 372 | 1.87e-55 | 186 |
MS.gene049362.t1 | AT4G23580 | 35.772 | 369 | 195 | 14 | 1 | 341 | 9 | 363 | 3.35e-55 | 186 |
MS.gene049362.t1 | AT4G33900 | 35.754 | 358 | 187 | 14 | 13 | 341 | 15 | 358 | 2.19e-54 | 183 |
MS.gene049362.t1 | AT4G39590 | 36.486 | 370 | 190 | 16 | 10 | 349 | 38 | 392 | 2.36e-54 | 184 |
MS.gene049362.t1 | AT5G48990 | 34.375 | 384 | 204 | 14 | 2 | 357 | 9 | 372 | 3.03e-54 | 182 |
MS.gene049362.t1 | AT4G11770 | 32.512 | 406 | 195 | 15 | 10 | 357 | 12 | 396 | 3.54e-51 | 175 |
MS.gene049362.t1 | AT4G29370 | 30.997 | 371 | 223 | 12 | 6 | 357 | 22 | 378 | 8.28e-50 | 171 |
MS.gene049362.t1 | AT1G60570 | 33.947 | 380 | 221 | 14 | 1 | 357 | 9 | 381 | 3.35e-49 | 170 |
MS.gene049362.t1 | AT4G39290 | 31.733 | 375 | 211 | 13 | 2 | 351 | 5 | 359 | 1.03e-47 | 165 |
MS.gene049362.t1 | AT4G19330 | 31.956 | 363 | 206 | 11 | 13 | 352 | 34 | 378 | 1.26e-47 | 166 |
MS.gene049362.t1 | AT4G39600 | 33.425 | 365 | 201 | 14 | 11 | 351 | 26 | 372 | 1.68e-47 | 165 |
MS.gene049362.t1 | AT4G39600 | 33.425 | 365 | 201 | 14 | 11 | 351 | 15 | 361 | 1.68e-47 | 165 |
MS.gene049362.t1 | AT3G43710 | 33.621 | 348 | 207 | 11 | 10 | 343 | 26 | 363 | 2.30e-47 | 165 |
MS.gene049362.t1 | AT4G19870 | 31.662 | 379 | 210 | 10 | 15 | 357 | 35 | 400 | 4.53e-47 | 164 |
MS.gene049362.t1 | AT4G19870 | 31.662 | 379 | 210 | 10 | 15 | 357 | 35 | 400 | 4.53e-47 | 164 |
MS.gene049362.t1 | AT2G29600 | 32.425 | 367 | 218 | 13 | 11 | 357 | 59 | 415 | 1.20e-46 | 164 |
MS.gene049362.t1 | AT2G29810 | 33.514 | 370 | 225 | 12 | 1 | 357 | 22 | 383 | 2.47e-46 | 162 |
MS.gene049362.t1 | AT4G14905 | 30.904 | 343 | 203 | 10 | 15 | 343 | 36 | 358 | 2.65e-46 | 162 |
MS.gene049362.t1 | AT4G14905 | 30.904 | 343 | 203 | 10 | 15 | 343 | 36 | 358 | 2.65e-46 | 162 |
MS.gene049362.t1 | AT2G29830 | 31.405 | 363 | 203 | 14 | 2 | 334 | 13 | 359 | 4.62e-45 | 159 |
MS.gene049362.t1 | AT4G34170 | 34.564 | 298 | 168 | 10 | 13 | 305 | 15 | 290 | 1.40e-44 | 155 |
MS.gene049362.t1 | AT4G39570 | 33.156 | 377 | 210 | 14 | 10 | 357 | 32 | 395 | 1.87e-44 | 157 |
MS.gene049362.t1 | AT4G35120 | 32.698 | 367 | 224 | 10 | 10 | 357 | 27 | 389 | 3.92e-44 | 156 |
MS.gene049362.t1 | AT1G19930 | 34.072 | 361 | 183 | 11 | 1 | 341 | 1 | 326 | 3.96e-44 | 155 |
MS.gene049362.t1 | AT2G29770 | 32.075 | 371 | 216 | 15 | 2 | 349 | 22 | 379 | 1.90e-43 | 155 |
MS.gene049362.t1 | AT5G49000 | 32.194 | 351 | 189 | 14 | 11 | 357 | 23 | 328 | 1.01e-42 | 151 |
MS.gene049362.t1 | AT1G61540 | 33.248 | 391 | 201 | 18 | 10 | 357 | 27 | 400 | 1.21e-42 | 153 |
MS.gene049362.t1 | AT4G39756 | 30.685 | 365 | 212 | 13 | 12 | 352 | 22 | 369 | 2.05e-42 | 152 |
MS.gene049362.t1 | AT4G38940 | 32.162 | 370 | 211 | 13 | 9 | 357 | 20 | 370 | 2.23e-42 | 151 |
MS.gene049362.t1 | AT4G11750 | 31.620 | 389 | 215 | 12 | 10 | 357 | 8 | 386 | 3.08e-42 | 151 |
MS.gene049362.t1 | AT5G51250 | 32.800 | 375 | 218 | 13 | 10 | 357 | 1 | 368 | 4.41e-41 | 148 |
MS.gene049362.t1 | AT5G38680 | 31.507 | 365 | 194 | 12 | 6 | 345 | 12 | 345 | 4.69e-40 | 145 |
MS.gene049362.t1 | AT2G21680 | 32.010 | 403 | 201 | 18 | 13 | 357 | 42 | 429 | 7.42e-40 | 146 |
MS.gene049362.t1 | AT3G06570 | 31.233 | 365 | 214 | 13 | 13 | 350 | 29 | 383 | 2.03e-39 | 144 |
MS.gene049362.t1 | AT3G46050 | 34.239 | 368 | 188 | 15 | 2 | 342 | 5 | 345 | 8.09e-39 | 142 |
MS.gene049362.t1 | AT3G27910 | 34.483 | 261 | 150 | 9 | 105 | 357 | 47 | 294 | 9.15e-39 | 140 |
MS.gene049362.t1 | AT2G22030 | 32.540 | 378 | 215 | 14 | 4 | 356 | 20 | 382 | 1.50e-38 | 141 |
MS.gene049362.t1 | AT1G19470 | 31.868 | 364 | 220 | 15 | 13 | 357 | 58 | 412 | 3.99e-38 | 141 |
MS.gene049362.t1 | AT4G19865 | 29.600 | 375 | 216 | 12 | 15 | 357 | 35 | 393 | 5.10e-38 | 140 |
MS.gene049362.t1 | AT5G39560 | 32.447 | 376 | 196 | 16 | 12 | 345 | 31 | 390 | 1.71e-37 | 139 |
MS.gene049362.t1 | AT2G29780 | 31.070 | 383 | 217 | 13 | 2 | 357 | 36 | 398 | 1.99e-37 | 139 |
MS.gene049362.t1 | AT2G44630 | 31.694 | 366 | 209 | 12 | 12 | 356 | 26 | 371 | 4.58e-37 | 137 |
MS.gene049362.t1 | AT1G19460 | 30.518 | 367 | 225 | 13 | 13 | 357 | 58 | 416 | 5.52e-37 | 138 |
MS.gene049362.t1 | AT4G39560 | 38.618 | 246 | 137 | 7 | 1 | 235 | 18 | 260 | 2.23e-36 | 133 |
MS.gene049362.t1 | AT4G39560 | 38.618 | 246 | 137 | 7 | 1 | 235 | 18 | 260 | 2.23e-36 | 133 |
MS.gene049362.t1 | AT5G48980 | 30.890 | 382 | 211 | 16 | 11 | 356 | 33 | 397 | 2.38e-36 | 136 |
MS.gene049362.t1 | AT4G39760 | 29.620 | 368 | 220 | 14 | 12 | 357 | 19 | 369 | 5.26e-36 | 134 |
MS.gene049362.t1 | AT5G03000 | 32.948 | 346 | 173 | 13 | 8 | 342 | 38 | 335 | 1.10e-35 | 133 |
MS.gene049362.t1 | AT2G44030 | 31.421 | 366 | 197 | 13 | 12 | 348 | 21 | 361 | 1.20e-35 | 134 |
MS.gene049362.t1 | AT5G02980 | 33.621 | 348 | 177 | 12 | 7 | 342 | 11 | 316 | 4.58e-35 | 131 |
MS.gene049362.t1 | AT4G11745 | 34.351 | 262 | 146 | 12 | 107 | 357 | 36 | 282 | 7.16e-34 | 127 |
MS.gene049362.t1 | AT2G29800 | 30.682 | 352 | 211 | 11 | 13 | 344 | 63 | 401 | 8.76e-34 | 129 |
MS.gene049362.t1 | AT4G25710 | 30.027 | 373 | 225 | 10 | 11 | 357 | 28 | 390 | 1.70e-33 | 128 |
MS.gene049362.t1 | AT2G29820 | 31.003 | 329 | 194 | 13 | 22 | 334 | 53 | 364 | 2.08e-33 | 128 |
MS.gene049362.t1 | AT4G19250 | 33.891 | 239 | 138 | 8 | 117 | 352 | 2 | 223 | 2.56e-33 | 124 |
MS.gene049362.t1 | AT2G29780 | 34.328 | 268 | 149 | 8 | 2 | 250 | 36 | 295 | 4.13e-33 | 126 |
MS.gene049362.t1 | AT2G22050 | 36.596 | 235 | 114 | 12 | 12 | 223 | 33 | 255 | 2.24e-29 | 114 |
MS.gene049362.t1 | AT5G28160 | 27.624 | 362 | 185 | 11 | 12 | 351 | 12 | 318 | 2.46e-29 | 115 |
MS.gene049362.t1 | AT2G44700 | 28.969 | 359 | 226 | 13 | 9 | 356 | 27 | 367 | 2.83e-29 | 116 |
MS.gene049362.t1 | AT5G28180 | 27.642 | 369 | 177 | 15 | 12 | 351 | 39 | 346 | 7.51e-29 | 115 |
MS.gene049362.t1 | AT2G22050 | 36.797 | 231 | 111 | 12 | 12 | 219 | 33 | 251 | 8.84e-29 | 112 |
MS.gene049362.t1 | AT1G55270 | 28.065 | 367 | 228 | 13 | 9 | 353 | 78 | 430 | 5.54e-28 | 114 |
MS.gene049362.t1 | AT2G03460 | 31.064 | 235 | 150 | 6 | 124 | 351 | 21 | 250 | 7.26e-28 | 110 |
MS.gene049362.t1 | AT3G24610 | 28.010 | 382 | 183 | 12 | 4 | 343 | 22 | 353 | 8.34e-28 | 112 |
MS.gene049362.t1 | AT4G02310 | 29.722 | 360 | 219 | 14 | 3 | 351 | 6 | 342 | 1.44e-27 | 111 |
MS.gene049362.t1 | AT3G10510 | 27.869 | 366 | 209 | 14 | 2 | 334 | 7 | 350 | 8.88e-27 | 109 |
MS.gene049362.t1 | AT2G29860 | 34.928 | 209 | 123 | 7 | 6 | 206 | 15 | 218 | 2.81e-26 | 105 |
MS.gene049362.t1 | AT2G20380 | 26.615 | 387 | 209 | 16 | 2 | 357 | 6 | 348 | 3.31e-26 | 107 |
MS.gene049362.t1 | AT3G08810 | 27.688 | 372 | 196 | 11 | 2 | 350 | 15 | 336 | 6.64e-26 | 106 |
MS.gene049362.t1 | AT2G41360 | 27.865 | 384 | 229 | 19 | 1 | 352 | 1 | 368 | 2.37e-25 | 105 |
MS.gene049362.t1 | AT4G39753 | 27.273 | 363 | 228 | 14 | 15 | 355 | 40 | 388 | 1.01e-24 | 104 |
MS.gene049362.t1 | AT5G03020 | 29.226 | 349 | 198 | 11 | 15 | 349 | 22 | 335 | 2.58e-24 | 102 |
MS.gene049362.t1 | AT5G38670 | 27.005 | 374 | 173 | 15 | 1 | 357 | 1 | 291 | 6.75e-23 | 97.4 |
MS.gene049362.t1 | AT4G25710 | 31.667 | 240 | 142 | 5 | 11 | 228 | 28 | 267 | 8.42e-23 | 96.7 |
MS.gene049362.t1 | AT3G61350 | 25.676 | 370 | 222 | 16 | 9 | 357 | 21 | 358 | 7.18e-22 | 95.5 |
MS.gene049362.t1 | AT3G61350 | 25.676 | 370 | 222 | 16 | 9 | 357 | 21 | 358 | 7.18e-22 | 95.5 |
MS.gene049362.t1 | AT4G36840 | 30.973 | 226 | 129 | 8 | 138 | 343 | 1 | 219 | 4.47e-21 | 91.3 |
MS.gene049362.t1 | AT1G67480 | 29.710 | 276 | 170 | 10 | 9 | 266 | 39 | 308 | 5.74e-21 | 93.2 |
MS.gene049362.t1 | AT1G67480 | 29.710 | 276 | 170 | 10 | 9 | 266 | 39 | 308 | 5.74e-21 | 93.2 |
MS.gene049362.t1 | AT1G67480 | 29.710 | 276 | 170 | 10 | 9 | 266 | 39 | 308 | 5.74e-21 | 93.2 |
MS.gene049362.t1 | AT1G22040 | 26.124 | 356 | 180 | 8 | 9 | 281 | 43 | 398 | 1.17e-20 | 93.2 |
MS.gene049362.t1 | AT1G30090 | 28.125 | 320 | 191 | 12 | 9 | 302 | 53 | 359 | 7.82e-20 | 90.1 |
MS.gene049362.t1 | AT5G02995 | 27.760 | 317 | 194 | 9 | 29 | 333 | 2 | 295 | 9.62e-20 | 89.0 |
MS.gene049362.t1 | AT4G36840 | 30.622 | 209 | 121 | 7 | 138 | 326 | 1 | 205 | 1.28e-17 | 80.9 |
MS.gene049362.t1 | AT1G27420 | 27.719 | 285 | 181 | 10 | 3 | 268 | 4 | 282 | 3.64e-17 | 82.0 |
MS.gene049362.t1 | AT3G63220 | 26.282 | 312 | 196 | 12 | 2 | 294 | 4 | 300 | 7.67e-17 | 81.3 |
MS.gene049362.t1 | AT3G63220 | 26.282 | 312 | 196 | 12 | 2 | 294 | 4 | 300 | 7.67e-17 | 81.3 |
MS.gene049362.t1 | AT3G63220 | 26.710 | 307 | 191 | 12 | 7 | 294 | 2 | 293 | 1.65e-16 | 80.1 |
MS.gene049362.t1 | AT2G24540 | 25.175 | 286 | 192 | 10 | 3 | 270 | 22 | 303 | 7.12e-16 | 78.6 |
MS.gene049362.t1 | AT2G45406 | 40.964 | 83 | 47 | 2 | 109 | 190 | 1 | 82 | 1.37e-13 | 67.4 |
MS.gene049362.t1 | AT5G02990 | 35.556 | 135 | 83 | 2 | 16 | 146 | 24 | 158 | 2.87e-13 | 67.4 |
MS.gene049362.t1 | AT5G60570 | 25.523 | 239 | 160 | 8 | 1 | 236 | 41 | 264 | 3.58e-12 | 67.4 |
MS.gene049362.t1 | AT5G60570 | 25.523 | 239 | 160 | 8 | 1 | 236 | 41 | 264 | 3.58e-12 | 67.4 |
MS.gene049362.t1 | AT5G60570 | 25.523 | 239 | 160 | 8 | 1 | 236 | 41 | 264 | 3.58e-12 | 67.4 |
MS.gene049362.t1 | AT1G16250 | 26.639 | 244 | 153 | 8 | 6 | 227 | 5 | 244 | 5.29e-12 | 67.0 |
MS.gene049362.t1 | AT1G16250 | 26.639 | 244 | 153 | 8 | 6 | 227 | 5 | 244 | 5.29e-12 | 67.0 |
Find 146 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTATTGCTATGATTATTT+AGG | 0.101723 | 3.1:+75685124 | MS.gene049362:CDS |
TGGGAAATTGGTTGTGGTTT+GGG | 0.195904 | 3.1:+75685252 | MS.gene049362:CDS |
AGAATAAGGATGGGGAATTA+TGG | 0.232884 | 3.1:+75685359 | MS.gene049362:CDS |
ATCCATTTCTCACGAATTTC+TGG | 0.252013 | 3.1:-75684953 | None:intergenic |
ATGGGATCAGGTTTGAGTTT+TGG | 0.259611 | 3.1:-75684400 | None:intergenic |
GACCCGTGCAAGGCAGTTTA+TGG | 0.265673 | 3.1:-75684441 | None:intergenic |
TGTATTGCTATGATTATTTA+GGG | 0.266313 | 3.1:+75685125 | MS.gene049362:CDS |
TGATTATTTAGGGAAAATTA+AGG | 0.267251 | 3.1:+75685135 | MS.gene049362:CDS |
GTGGGAAATTGGTTGTGGTT+TGG | 0.275006 | 3.1:+75685251 | MS.gene049362:CDS |
GTTGGAAGGGAGCTTGATTT+AGG | 0.275591 | 3.1:+75685067 | MS.gene049362:CDS |
CTCTCCCACGCGCCGTTATA+AGG | 0.283691 | 3.1:-75685043 | None:intergenic |
CAGTTTATGGCTACGTCGTC+TGG | 0.300590 | 3.1:-75684428 | None:intergenic |
GGCTGATGTTGGTGGGAAAT+TGG | 0.300862 | 3.1:+75685240 | MS.gene049362:CDS |
AAGGAAGAGGAGGGAGAGGG+AGG | 0.303836 | 3.1:-75684643 | None:intergenic |
CTTTCCCAGCGGTTGGTAAC+AGG | 0.327535 | 3.1:-75684917 | None:intergenic |
GGGGAAGGAAGAGGAGGGAG+AGG | 0.332205 | 3.1:-75684647 | None:intergenic |
AATTATGGGGTGAAGTTTGT+TGG | 0.338791 | 3.1:+75685374 | MS.gene049362:CDS |
GTGGAGAAGAGAGGAGAGAA+TGG | 0.338796 | 3.1:-75684508 | None:intergenic |
GAATAAGGATGGGGAATTAT+GGG | 0.351182 | 3.1:+75685360 | MS.gene049362:CDS |
GCGCGTGAATTCGCCGCTGC+TGG | 0.373544 | 3.1:+75684809 | MS.gene049362:CDS |
CGCGACGCGCATGGAGGGAC+CGG | 0.384207 | 3.1:-75684789 | None:intergenic |
GAGGAGAGAATGGATTGGTT+TGG | 0.385212 | 3.1:-75684498 | None:intergenic |
CGGGGAGCCAGCGGTGGAAT+CGG | 0.393995 | 3.1:-75684769 | None:intergenic |
GGAGGAGACGGTGGTTATTG+TGG | 0.394778 | 3.1:-75684625 | None:intergenic |
GAGGAGGGAGAGGGAGGAGA+CGG | 0.398264 | 3.1:-75684637 | None:intergenic |
CACCAGAAATTCGTGAGAAA+TGG | 0.399575 | 3.1:+75684951 | MS.gene049362:CDS |
AGGGGAAAGAAATGGAGATT+TGG | 0.400105 | 3.1:+75685305 | MS.gene049362:CDS |
CTCAGACCAATTGGCTGACC+TGG | 0.409808 | 3.1:-75684885 | None:intergenic |
GAGAGAGGTAGAGGATGTGT+TGG | 0.414107 | 3.1:-75684565 | None:intergenic |
TTGATTGCCGATTCCACCGC+TGG | 0.415692 | 3.1:+75684762 | MS.gene049362:CDS |
TATTGTGGAGGGTGAAGAAT+TGG | 0.417411 | 3.1:-75684610 | None:intergenic |
TGAACAATGGAAGATCCTTT+AGG | 0.424469 | 3.1:-75685418 | None:intergenic |
GTGGAAGGAGTTGAAAGGTT+TGG | 0.425255 | 3.1:+75685180 | MS.gene049362:CDS |
CGTCTGGGAGGGATGGGATC+AGG | 0.425632 | 3.1:-75684412 | None:intergenic |
AATGTTCTTTCTGTTCCTAA+AGG | 0.426640 | 3.1:+75685403 | MS.gene049362:CDS |
GATTATTTAGGGAAAATTAA+GGG | 0.427665 | 3.1:+75685136 | MS.gene049362:CDS |
GTTTCGTTTGATCCTTATAA+CGG | 0.436988 | 3.1:+75685031 | MS.gene049362:CDS |
TTGGTTTGGAAACGAGGGTG+AGG | 0.443707 | 3.1:-75684484 | None:intergenic |
CCGCTGCTGGTGTTATCAAC+GGG | 0.445241 | 3.1:+75684822 | MS.gene049362:CDS |
GCTACGTCGTCTGGGAGGGA+TGG | 0.445851 | 3.1:-75684419 | None:intergenic |
ATGTACCATCTCGTCATGTA+TGG | 0.447118 | 3.1:+75684735 | MS.gene049362:CDS |
CGATTCCACCGCTGGCTCCC+CGG | 0.454099 | 3.1:+75684770 | MS.gene049362:CDS |
ATCGAAAACCTCAGACCAAT+TGG | 0.454196 | 3.1:-75684894 | None:intergenic |
TAGAGGATGTGTTGGGTGGA+AGG | 0.455700 | 3.1:-75684557 | None:intergenic |
CTACGTCGTCTGGGAGGGAT+GGG | 0.457938 | 3.1:-75684418 | None:intergenic |
AAGAAGAAGAAGAATAAGGA+TGG | 0.459212 | 3.1:+75685349 | MS.gene049362:CDS |
GAGGGAGAGGGAGGAGACGG+TGG | 0.459896 | 3.1:-75684634 | None:intergenic |
GGGAAGGAAGAGGAGGGAGA+GGG | 0.467938 | 3.1:-75684646 | None:intergenic |
GCGTAAGCGGAGCCGATTGT+AGG | 0.471244 | 3.1:-75684668 | None:intergenic |
CGTAAGCGGAGCCGATTGTA+GGG | 0.471976 | 3.1:-75684667 | None:intergenic |
GAAGGGAGCTTGATTTAGGT+TGG | 0.475106 | 3.1:+75685071 | MS.gene049362:CDS |
GTGTGCGGAGAGAGAGGTAG+AGG | 0.475726 | 3.1:-75684574 | None:intergenic |
TGTTGGTGGGAAATTGGTTG+TGG | 0.476458 | 3.1:+75685246 | MS.gene049362:CDS |
CCTCTTCCTTCCCCTACAAT+CGG | 0.477902 | 3.1:+75684656 | MS.gene049362:CDS |
TCGATCCTGTTACCAACCGC+TGG | 0.491929 | 3.1:+75684912 | MS.gene049362:CDS |
AGAGGATGTGTTGGGTGGAA+GGG | 0.494197 | 3.1:-75684556 | None:intergenic |
AGCGGTGGAATCGGCAATCA+AGG | 0.496819 | 3.1:-75684760 | None:intergenic |
AAATAAGAAGGGGAAAGAAA+TGG | 0.497591 | 3.1:+75685297 | MS.gene049362:CDS |
GCGACGCGCATGGAGGGACC+GGG | 0.501360 | 3.1:-75684788 | None:intergenic |
TGGTTTGGAAACGAGGGTGA+GGG | 0.501416 | 3.1:-75684483 | None:intergenic |
AGGGTTGTGTGGTGAGAGCG+TGG | 0.503990 | 3.1:-75684464 | None:intergenic |
TCACGAATTTCTGGTGGACT+AGG | 0.504253 | 3.1:-75684944 | None:intergenic |
AGAAGAAGAAGAATAAGGAT+GGG | 0.504515 | 3.1:+75685350 | MS.gene049362:CDS |
GAAGAGAGGAGAGAATGGAT+TGG | 0.505986 | 3.1:-75684503 | None:intergenic |
GTTTACCAAGGTTTCTGTGT+GGG | 0.506144 | 3.1:+75685209 | MS.gene049362:CDS |
CAGGTCAGCCAATTGGTCTG+AGG | 0.506793 | 3.1:+75684886 | MS.gene049362:CDS |
AGGGACCGGGGAGCCAGCGG+TGG | 0.509897 | 3.1:-75684775 | None:intergenic |
GGGAGAGCAACTGTTGTGGA+TGG | 0.510495 | 3.1:+75685097 | MS.gene049362:CDS |
GCTACAATGGCTGATGTTGG+TGG | 0.511043 | 3.1:+75685232 | MS.gene049362:CDS |
GAATTTGAATGCAAATAAGA+AGG | 0.511518 | 3.1:+75685285 | MS.gene049362:CDS |
CACGCTAGCGCGGTCGTAGA+CGG | 0.513221 | 3.1:+75684977 | MS.gene049362:CDS |
AGAGAGGTAGAGGATGTGTT+GGG | 0.517370 | 3.1:-75684564 | None:intergenic |
AATTTGAATGCAAATAAGAA+GGG | 0.517396 | 3.1:+75685286 | MS.gene049362:CDS |
TTGTGGTTTGGGAGTGTCAA+AGG | 0.519615 | 3.1:+75685263 | MS.gene049362:CDS |
CATTTCTCACGAATTTCTGG+TGG | 0.520076 | 3.1:-75684950 | None:intergenic |
GGTGAAGAATTGGAGAGAGG+TGG | 0.521152 | 3.1:-75684600 | None:intergenic |
GTTTCTGTGTGGGGCTACAA+TGG | 0.522064 | 3.1:+75685219 | MS.gene049362:CDS |
CCGATTGTAGGGGAAGGAAG+AGG | 0.526253 | 3.1:-75684656 | None:intergenic |
AATGGATTGGTTTGGAAACG+AGG | 0.527115 | 3.1:-75684490 | None:intergenic |
CGTCATCGGTGGTTGCGTGC+CGG | 0.527892 | 3.1:+75684853 | MS.gene049362:CDS |
GAGGTAGAGGATGTGTTGGG+TGG | 0.532415 | 3.1:-75684561 | None:intergenic |
TGAAGAAGAGTGGAGAAGAG+AGG | 0.534364 | 3.1:-75684517 | None:intergenic |
GGGGCTACAATGGCTGATGT+TGG | 0.535073 | 3.1:+75685229 | MS.gene049362:CDS |
TAGCCATAAACTGCCTTGCA+CGG | 0.537984 | 3.1:+75684438 | MS.gene049362:CDS |
TTGATCCTTATAACGGCGCG+TGG | 0.538684 | 3.1:+75685038 | MS.gene049362:CDS |
TGGAGCGTGTGCGGAGAGAG+AGG | 0.541247 | 3.1:-75684580 | None:intergenic |
GCCGCTGCTGGTGTTATCAA+CGG | 0.547810 | 3.1:+75684821 | MS.gene049362:CDS |
TTTACCAAGGTTTCTGTGTG+GGG | 0.550464 | 3.1:+75685210 | MS.gene049362:CDS |
TCACGCGCGACGCGCATGGA+GGG | 0.550890 | 3.1:-75684794 | None:intergenic |
AGCTTGATTTAGGTTGGCGC+GGG | 0.552408 | 3.1:+75685077 | MS.gene049362:CDS |
GAATTCACGCGCGACGCGCA+TGG | 0.553981 | 3.1:-75684798 | None:intergenic |
AGGAACACTTTCCCAGCGGT+TGG | 0.557279 | 3.1:-75684924 | None:intergenic |
GGAGACGGTGGTTATTGTGG+AGG | 0.557706 | 3.1:-75684622 | None:intergenic |
CTACAATGGCTGATGTTGGT+GGG | 0.559479 | 3.1:+75685233 | MS.gene049362:CDS |
GAAGAAGAAGAATAAGGATG+GGG | 0.559584 | 3.1:+75685351 | MS.gene049362:CDS |
TGGAGGGACCGGGGAGCCAG+CGG | 0.559843 | 3.1:-75684778 | None:intergenic |
TATGGCTACGTCGTCTGGGA+GGG | 0.561867 | 3.1:-75684423 | None:intergenic |
GAGCGAGCGGTGAAGAAGAG+TGG | 0.563340 | 3.1:-75684527 | None:intergenic |
CGATCCTGTTACCAACCGCT+GGG | 0.564306 | 3.1:+75684913 | MS.gene049362:CDS |
GAGAGCGTGGGACCCGTGCA+AGG | 0.565651 | 3.1:-75684451 | None:intergenic |
GGAGAGAGGTGGAGCGTGTG+CGG | 0.565891 | 3.1:-75684589 | None:intergenic |
AGTTTATGGCTACGTCGTCT+GGG | 0.567545 | 3.1:-75684427 | None:intergenic |
ATTGTAGGGGAAGGAAGAGG+AGG | 0.569549 | 3.1:-75684653 | None:intergenic |
AGCCATAAACTGCCTTGCAC+GGG | 0.572097 | 3.1:+75684439 | MS.gene049362:CDS |
ATGGATTGGTTTGGAAACGA+GGG | 0.575321 | 3.1:-75684489 | None:intergenic |
CGCGTGGGAGAGCGTTGGAA+GGG | 0.580543 | 3.1:+75685054 | MS.gene049362:CDS |
GCGCGTGGGAGAGCGTTGGA+AGG | 0.584479 | 3.1:+75685053 | MS.gene049362:CDS |
GAGGGTGAAGAATTGGAGAG+AGG | 0.589538 | 3.1:-75684603 | None:intergenic |
CCCGTTGATAACACCAGCAG+CGG | 0.593565 | 3.1:-75684822 | None:intergenic |
AACGGCGCGTGGGAGAGCGT+TGG | 0.594062 | 3.1:+75685049 | MS.gene049362:CDS |
GGAGAGCAACTGTTGTGGAT+GGG | 0.594745 | 3.1:+75685098 | MS.gene049362:CDS |
AATAAGGATGGGGAATTATG+GGG | 0.597570 | 3.1:+75685361 | MS.gene049362:CDS |
CACCACAAAATCTACCTCAT+CGG | 0.600911 | 3.1:+75684698 | MS.gene049362:CDS |
TTGTAGGGGAAGGAAGAGGA+GGG | 0.601044 | 3.1:-75684652 | None:intergenic |
CGACGCGCATGGAGGGACCG+GGG | 0.602014 | 3.1:-75684787 | None:intergenic |
TTATGGCTACGTCGTCTGGG+AGG | 0.604755 | 3.1:-75684424 | None:intergenic |
AAACGAGGGTGAGGGTTGTG+TGG | 0.611470 | 3.1:-75684475 | None:intergenic |
AACGGGAAAATCTACGTCAT+CGG | 0.611762 | 3.1:+75684839 | MS.gene049362:CDS |
GTGGTGGATGACAGCGTAAG+CGG | 0.611973 | 3.1:-75684681 | None:intergenic |
GTAGCCCCACACAGAAACCT+TGG | 0.612328 | 3.1:-75685214 | None:intergenic |
TTGATGTGAAGAAAGGGTTG+TGG | 0.612357 | 3.1:+75685161 | MS.gene049362:CDS |
GAGCTTGATTTAGGTTGGCG+CGG | 0.620728 | 3.1:+75685076 | MS.gene049362:CDS |
GCGGAGCCGATTGTAGGGGA+AGG | 0.620894 | 3.1:-75684662 | None:intergenic |
GGGTTGTGGAAGGAGTTGAA+AGG | 0.624861 | 3.1:+75685175 | MS.gene049362:CDS |
AGGATCCATACATGACGAGA+TGG | 0.628694 | 3.1:-75684740 | None:intergenic |
ATTTGAATGCAAATAAGAAG+GGG | 0.632620 | 3.1:+75685287 | MS.gene049362:CDS |
TGATCCTTATAACGGCGCGT+GGG | 0.632914 | 3.1:+75685039 | MS.gene049362:CDS |
CACAAAATCTACCTCATCGG+TGG | 0.633655 | 3.1:+75684701 | MS.gene049362:CDS |
GGGAAAATCTACGTCATCGG+TGG | 0.638696 | 3.1:+75684842 | MS.gene049362:CDS |
TTCACGCGCGACGCGCATGG+AGG | 0.638860 | 3.1:-75684795 | None:intergenic |
GAGACGGTGGTTATTGTGGA+GGG | 0.639572 | 3.1:-75684621 | None:intergenic |
GGAAGGGATGAGAGAGCGAG+CGG | 0.643411 | 3.1:-75684540 | None:intergenic |
GCGCGGGAGAGCAACTGTTG+TGG | 0.648340 | 3.1:+75685093 | MS.gene049362:CDS |
TACGCGATGGCGGATCGCGG+TGG | 0.651378 | 3.1:+75685007 | MS.gene049362:CDS |
AACAGAAGAACAATGAACAA+TGG | 0.652676 | 3.1:-75685431 | None:intergenic |
GTTTACGCGATGGCGGATCG+CGG | 0.654239 | 3.1:+75685004 | MS.gene049362:CDS |
TGTGAAGAAAGGGTTGTGGA+AGG | 0.655527 | 3.1:+75685165 | MS.gene049362:CDS |
AGACGGCAAAGTTTACGCGA+TGG | 0.658808 | 3.1:+75684994 | MS.gene049362:CDS |
GGGTTGTGTGGTGAGAGCGT+GGG | 0.659765 | 3.1:-75684463 | None:intergenic |
CGGCAAAGTTTACGCGATGG+CGG | 0.661397 | 3.1:+75684997 | MS.gene049362:CDS |
GAAATGGATGCACGCTAGCG+CGG | 0.679178 | 3.1:+75684967 | MS.gene049362:CDS |
AGTTTACCAAGGTTTCTGTG+TGG | 0.681635 | 3.1:+75685208 | MS.gene049362:CDS |
GTTTGGATAAGAGTTTACCA+AGG | 0.687199 | 3.1:+75685197 | MS.gene049362:CDS |
GACTAGGAACACTTTCCCAG+CGG | 0.689950 | 3.1:-75684928 | None:intergenic |
CGTTGACTGAACCACCGATG+AGG | 0.690906 | 3.1:-75684712 | None:intergenic |
GTAAGCGGAGCCGATTGTAG+GGG | 0.695680 | 3.1:-75684666 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTGAATGCAAATAAGAA+GGG | + | chr3.1:75685286-75685305 | MS.gene049362:CDS | 20.0% |
!! | GATTATTTAGGGAAAATTAA+GGG | + | chr3.1:75685136-75685155 | MS.gene049362:CDS | 20.0% |
!! | TGATTATTTAGGGAAAATTA+AGG | + | chr3.1:75685135-75685154 | MS.gene049362:CDS | 20.0% |
!! | TGTATTGCTATGATTATTTA+GGG | + | chr3.1:75685125-75685144 | MS.gene049362:CDS | 20.0% |
!! | TTGTATTGCTATGATTATTT+AGG | + | chr3.1:75685124-75685143 | MS.gene049362:CDS | 20.0% |
! | ATTTGAATGCAAATAAGAAG+GGG | + | chr3.1:75685287-75685306 | MS.gene049362:CDS | 25.0% |
! | GAATTTGAATGCAAATAAGA+AGG | + | chr3.1:75685285-75685304 | MS.gene049362:CDS | 25.0% |
AAATAAGAAGGGGAAAGAAA+TGG | + | chr3.1:75685297-75685316 | MS.gene049362:CDS | 30.0% | |
AACAGAAGAACAATGAACAA+TGG | - | chr3.1:75685434-75685453 | None:intergenic | 30.0% | |
AAGAAGAAGAAGAATAAGGA+TGG | + | chr3.1:75685349-75685368 | MS.gene049362:CDS | 30.0% | |
AATGTTCTTTCTGTTCCTAA+AGG | + | chr3.1:75685403-75685422 | MS.gene049362:CDS | 30.0% | |
AGAAGAAGAAGAATAAGGAT+GGG | + | chr3.1:75685350-75685369 | MS.gene049362:CDS | 30.0% | |
GAAGAAGAAGAAGAAGAATA+AGG | + | chr3.1:75685345-75685364 | MS.gene049362:CDS | 30.0% | |
GTTTCGTTTGATCCTTATAA+CGG | + | chr3.1:75685031-75685050 | MS.gene049362:CDS | 30.0% | |
AATAAGGATGGGGAATTATG+GGG | + | chr3.1:75685361-75685380 | MS.gene049362:CDS | 35.0% | |
AATTATGGGGTGAAGTTTGT+TGG | + | chr3.1:75685374-75685393 | MS.gene049362:CDS | 35.0% | |
AGAATAAGGATGGGGAATTA+TGG | + | chr3.1:75685359-75685378 | MS.gene049362:CDS | 35.0% | |
ATCCATTTCTCACGAATTTC+TGG | - | chr3.1:75684956-75684975 | None:intergenic | 35.0% | |
GAAGAAGAAGAATAAGGATG+GGG | + | chr3.1:75685351-75685370 | MS.gene049362:CDS | 35.0% | |
GAATAAGGATGGGGAATTAT+GGG | + | chr3.1:75685360-75685379 | MS.gene049362:CDS | 35.0% | |
GTTTGGATAAGAGTTTACCA+AGG | + | chr3.1:75685197-75685216 | MS.gene049362:CDS | 35.0% | |
TGAACAATGGAAGATCCTTT+AGG | - | chr3.1:75685421-75685440 | None:intergenic | 35.0% | |
!! | AAGGGTTTTGATGTGAAGAA+AGG | + | chr3.1:75685154-75685173 | MS.gene049362:CDS | 35.0% |
!! | AGGGTTTTGATGTGAAGAAA+GGG | + | chr3.1:75685155-75685174 | MS.gene049362:CDS | 35.0% |
AACGGGAAAATCTACGTCAT+CGG | + | chr3.1:75684839-75684858 | MS.gene049362:CDS | 40.0% | |
AGGGGAAAGAAATGGAGATT+TGG | + | chr3.1:75685305-75685324 | MS.gene049362:CDS | 40.0% | |
AGTTTACCAAGGTTTCTGTG+TGG | + | chr3.1:75685208-75685227 | MS.gene049362:CDS | 40.0% | |
ATCGAAAACCTCAGACCAAT+TGG | - | chr3.1:75684897-75684916 | None:intergenic | 40.0% | |
ATGTACCATCTCGTCATGTA+TGG | + | chr3.1:75684735-75684754 | MS.gene049362:CDS | 40.0% | |
CACCACAAAATCTACCTCAT+CGG | + | chr3.1:75684698-75684717 | MS.gene049362:CDS | 40.0% | |
CACCAGAAATTCGTGAGAAA+TGG | + | chr3.1:75684951-75684970 | MS.gene049362:CDS | 40.0% | |
GCTGACCTGGAAAAATTATC+CGG | - | chr3.1:75684875-75684894 | None:intergenic | 40.0% | |
GTTTACCAAGGTTTCTGTGT+GGG | + | chr3.1:75685209-75685228 | MS.gene049362:CDS | 40.0% | |
TATTGTGGAGGGTGAAGAAT+TGG | - | chr3.1:75684613-75684632 | None:intergenic | 40.0% | |
TGGGAAATTGGTTGTGGTTT+GGG | + | chr3.1:75685252-75685271 | MS.gene049362:CDS | 40.0% | |
TTGATGTGAAGAAAGGGTTG+TGG | + | chr3.1:75685161-75685180 | MS.gene049362:CDS | 40.0% | |
TTTACCAAGGTTTCTGTGTG+GGG | + | chr3.1:75685210-75685229 | MS.gene049362:CDS | 40.0% | |
! | ATTTTTCCAGGTCAGCCAAT+TGG | + | chr3.1:75684879-75684898 | MS.gene049362:CDS | 40.0% |
! | CATTTCTCACGAATTTCTGG+TGG | - | chr3.1:75684953-75684972 | None:intergenic | 40.0% |
!! | AATGGATTGGTTTGGAAACG+AGG | - | chr3.1:75684493-75684512 | None:intergenic | 40.0% |
!! | ATGGATTGGTTTGGAAACGA+GGG | - | chr3.1:75684492-75684511 | None:intergenic | 40.0% |
!! | ATGGGATCAGGTTTGAGTTT+TGG | - | chr3.1:75684403-75684422 | None:intergenic | 40.0% |
AGAGAGGTAGAGGATGTGTT+GGG | - | chr3.1:75684567-75684586 | None:intergenic | 45.0% | |
AGGATCCATACATGACGAGA+TGG | - | chr3.1:75684743-75684762 | None:intergenic | 45.0% | |
AGTTTATGGCTACGTCGTCT+GGG | - | chr3.1:75684430-75684449 | None:intergenic | 45.0% | |
CACAAAATCTACCTCATCGG+TGG | + | chr3.1:75684701-75684720 | MS.gene049362:CDS | 45.0% | |
CTACAATGGCTGATGTTGGT+GGG | + | chr3.1:75685233-75685252 | MS.gene049362:CDS | 45.0% | |
GAAGAGAGGAGAGAATGGAT+TGG | - | chr3.1:75684506-75684525 | None:intergenic | 45.0% | |
GAAGGGAGCTTGATTTAGGT+TGG | + | chr3.1:75685071-75685090 | MS.gene049362:CDS | 45.0% | |
GTGGAAGGAGTTGAAAGGTT+TGG | + | chr3.1:75685180-75685199 | MS.gene049362:CDS | 45.0% | |
GTGGGAAATTGGTTGTGGTT+TGG | + | chr3.1:75685251-75685270 | MS.gene049362:CDS | 45.0% | |
GTTGGAAGGGAGCTTGATTT+AGG | + | chr3.1:75685067-75685086 | MS.gene049362:CDS | 45.0% | |
TAGCCATAAACTGCCTTGCA+CGG | + | chr3.1:75684438-75684457 | MS.gene049362:CDS | 45.0% | |
TGAAGAAGAGTGGAGAAGAG+AGG | - | chr3.1:75684520-75684539 | None:intergenic | 45.0% | |
TGTGAAGAAAGGGTTGTGGA+AGG | + | chr3.1:75685165-75685184 | MS.gene049362:CDS | 45.0% | |
! | CACCGATGAGGTAGATTTTG+TGG | - | chr3.1:75684703-75684722 | None:intergenic | 45.0% |
! | CGATGAGGTAGATTTTGTGG+TGG | - | chr3.1:75684700-75684719 | None:intergenic | 45.0% |
! | TGTTGGTGGGAAATTGGTTG+TGG | + | chr3.1:75685246-75685265 | MS.gene049362:CDS | 45.0% |
!! | GAGGAGAGAATGGATTGGTT+TGG | - | chr3.1:75684501-75684520 | None:intergenic | 45.0% |
!! | TCACGAATTTCTGGTGGACT+AGG | - | chr3.1:75684947-75684966 | None:intergenic | 45.0% |
!! | TTGTGGTTTGGGAGTGTCAA+AGG | + | chr3.1:75685263-75685282 | MS.gene049362:CDS | 45.0% |
AGACGGCAAAGTTTACGCGA+TGG | + | chr3.1:75684994-75685013 | MS.gene049362:CDS | 50.0% | |
AGAGGATGTGTTGGGTGGAA+GGG | - | chr3.1:75684559-75684578 | None:intergenic | 50.0% | |
AGCCATAAACTGCCTTGCAC+GGG | + | chr3.1:75684439-75684458 | MS.gene049362:CDS | 50.0% | |
ATTGTAGGGGAAGGAAGAGG+AGG | - | chr3.1:75684656-75684675 | None:intergenic | 50.0% | |
CAGTTTATGGCTACGTCGTC+TGG | - | chr3.1:75684431-75684450 | None:intergenic | 50.0% | |
CCTCTTCCTTCCCCTACAAT+CGG | + | chr3.1:75684656-75684675 | MS.gene049362:CDS | 50.0% | |
GACTAGGAACACTTTCCCAG+CGG | - | chr3.1:75684931-75684950 | None:intergenic | 50.0% | |
GAGACGGTGGTTATTGTGGA+GGG | - | chr3.1:75684624-75684643 | None:intergenic | 50.0% | |
GAGAGAGGTAGAGGATGTGT+TGG | - | chr3.1:75684568-75684587 | None:intergenic | 50.0% | |
GAGGGTGAAGAATTGGAGAG+AGG | - | chr3.1:75684606-75684625 | None:intergenic | 50.0% | |
GCTACAATGGCTGATGTTGG+TGG | + | chr3.1:75685232-75685251 | MS.gene049362:CDS | 50.0% | |
GGAGAGCAACTGTTGTGGAT+GGG | + | chr3.1:75685098-75685117 | MS.gene049362:CDS | 50.0% | |
GGGAAAATCTACGTCATCGG+TGG | + | chr3.1:75684842-75684861 | MS.gene049362:CDS | 50.0% | |
GGGTTGTGGAAGGAGTTGAA+AGG | + | chr3.1:75685175-75685194 | MS.gene049362:CDS | 50.0% | |
GGTGAAGAATTGGAGAGAGG+TGG | - | chr3.1:75684603-75684622 | None:intergenic | 50.0% | |
GTGGAGAAGAGAGGAGAGAA+TGG | - | chr3.1:75684511-75684530 | None:intergenic | 50.0% | |
GTTTCTGTGTGGGGCTACAA+TGG | + | chr3.1:75685219-75685238 | MS.gene049362:CDS | 50.0% | |
TAGAGGATGTGTTGGGTGGA+AGG | - | chr3.1:75684560-75684579 | None:intergenic | 50.0% | |
TGATCCTTATAACGGCGCGT+GGG | + | chr3.1:75685039-75685058 | MS.gene049362:CDS | 50.0% | |
TTGATCCTTATAACGGCGCG+TGG | + | chr3.1:75685038-75685057 | MS.gene049362:CDS | 50.0% | |
TTGTAGGGGAAGGAAGAGGA+GGG | - | chr3.1:75684655-75684674 | None:intergenic | 50.0% | |
! | GCGTGCCGGATAATTTTTCC+AGG | + | chr3.1:75684867-75684886 | MS.gene049362:CDS | 50.0% |
! | GGCTGATGTTGGTGGGAAAT+TGG | + | chr3.1:75685240-75685259 | MS.gene049362:CDS | 50.0% |
! | TGGTTTGGAAACGAGGGTGA+GGG | - | chr3.1:75684486-75684505 | None:intergenic | 50.0% |
!! | AGCTTGATTTAGGTTGGCGC+GGG | + | chr3.1:75685077-75685096 | MS.gene049362:CDS | 50.0% |
!! | GAGCTTGATTTAGGTTGGCG+CGG | + | chr3.1:75685076-75685095 | MS.gene049362:CDS | 50.0% |
!! | TTGGTTTGGAAACGAGGGTG+AGG | - | chr3.1:75684487-75684506 | None:intergenic | 50.0% |
AAACGAGGGTGAGGGTTGTG+TGG | - | chr3.1:75684478-75684497 | None:intergenic | 55.0% | |
AGCGGTGGAATCGGCAATCA+AGG | - | chr3.1:75684763-75684782 | None:intergenic | 55.0% | |
AGGAACACTTTCCCAGCGGT+TGG | - | chr3.1:75684927-75684946 | None:intergenic | 55.0% | |
CCGATTGTAGGGGAAGGAAG+AGG | - | chr3.1:75684659-75684678 | None:intergenic | 55.0% | |
CGATCCTGTTACCAACCGCT+GGG | + | chr3.1:75684913-75684932 | MS.gene049362:CDS | 55.0% | |
CGGCAAAGTTTACGCGATGG+CGG | + | chr3.1:75684997-75685016 | MS.gene049362:CDS | 55.0% | |
CGTAAGCGGAGCCGATTGTA+GGG | - | chr3.1:75684670-75684689 | None:intergenic | 55.0% | |
CTCAGACCAATTGGCTGACC+TGG | - | chr3.1:75684888-75684907 | None:intergenic | 55.0% | |
GAAATGGATGCACGCTAGCG+CGG | + | chr3.1:75684967-75684986 | MS.gene049362:CDS | 55.0% | |
GACCCGTGCAAGGCAGTTTA+TGG | - | chr3.1:75684444-75684463 | None:intergenic | 55.0% | |
GAGGTAGAGGATGTGTTGGG+TGG | - | chr3.1:75684564-75684583 | None:intergenic | 55.0% | |
GGAGACGGTGGTTATTGTGG+AGG | - | chr3.1:75684625-75684644 | None:intergenic | 55.0% | |
GGAGGAGACGGTGGTTATTG+TGG | - | chr3.1:75684628-75684647 | None:intergenic | 55.0% | |
GGGAGAGCAACTGTTGTGGA+TGG | + | chr3.1:75685097-75685116 | MS.gene049362:CDS | 55.0% | |
GGGGCTACAATGGCTGATGT+TGG | + | chr3.1:75685229-75685248 | MS.gene049362:CDS | 55.0% | |
GTAAGCGGAGCCGATTGTAG+GGG | - | chr3.1:75684669-75684688 | None:intergenic | 55.0% | |
GTAGCCCCACACAGAAACCT+TGG | - | chr3.1:75685217-75685236 | None:intergenic | 55.0% | |
TATGGCTACGTCGTCTGGGA+GGG | - | chr3.1:75684426-75684445 | None:intergenic | 55.0% | |
TCGATCCTGTTACCAACCGC+TGG | + | chr3.1:75684912-75684931 | MS.gene049362:CDS | 55.0% | |
TTATGGCTACGTCGTCTGGG+AGG | - | chr3.1:75684427-75684446 | None:intergenic | 55.0% | |
! | CAGGTCAGCCAATTGGTCTG+AGG | + | chr3.1:75684886-75684905 | MS.gene049362:CDS | 55.0% |
! | CGTTGACTGAACCACCGATG+AGG | - | chr3.1:75684715-75684734 | None:intergenic | 55.0% |
!! | CCCGTTGATAACACCAGCAG+CGG | - | chr3.1:75684825-75684844 | None:intergenic | 55.0% |
!! | CCGCTGCTGGTGTTATCAAC+GGG | + | chr3.1:75684822-75684841 | MS.gene049362:CDS | 55.0% |
!! | CTTTCCCAGCGGTTGGTAAC+AGG | - | chr3.1:75684920-75684939 | None:intergenic | 55.0% |
!! | GCCGCTGCTGGTGTTATCAA+CGG | + | chr3.1:75684821-75684840 | MS.gene049362:CDS | 55.0% |
!! | GTGGTGGATGACAGCGTAAG+CGG | - | chr3.1:75684684-75684703 | None:intergenic | 55.0% |
!! | TTGATTGCCGATTCCACCGC+TGG | + | chr3.1:75684762-75684781 | MS.gene049362:CDS | 55.0% |
AAGGAAGAGGAGGGAGAGGG+AGG | - | chr3.1:75684646-75684665 | None:intergenic | 60.0% | |
AGGGTTGTGTGGTGAGAGCG+TGG | - | chr3.1:75684467-75684486 | None:intergenic | 60.0% | |
CTACGTCGTCTGGGAGGGAT+GGG | - | chr3.1:75684421-75684440 | None:intergenic | 60.0% | |
CTCTCCCACGCGCCGTTATA+AGG | - | chr3.1:75685046-75685065 | None:intergenic | 60.0% | |
GAGCGAGCGGTGAAGAAGAG+TGG | - | chr3.1:75684530-75684549 | None:intergenic | 60.0% | |
GCGTAAGCGGAGCCGATTGT+AGG | - | chr3.1:75684671-75684690 | None:intergenic | 60.0% | |
GGAAGGGATGAGAGAGCGAG+CGG | - | chr3.1:75684543-75684562 | None:intergenic | 60.0% | |
GGGAAGGAAGAGGAGGGAGA+GGG | - | chr3.1:75684649-75684668 | None:intergenic | 60.0% | |
GTGTGCGGAGAGAGAGGTAG+AGG | - | chr3.1:75684577-75684596 | None:intergenic | 60.0% | |
! | GGGTTGTGTGGTGAGAGCGT+GGG | - | chr3.1:75684466-75684485 | None:intergenic | 60.0% |
!! | GTTTACGCGATGGCGGATCG+CGG | + | chr3.1:75685004-75685023 | MS.gene049362:CDS | 60.0% |
CACGCTAGCGCGGTCGTAGA+CGG | + | chr3.1:75684977-75684996 | MS.gene049362:CDS | 65.0% | |
CGTCATCGGTGGTTGCGTGC+CGG | + | chr3.1:75684853-75684872 | MS.gene049362:CDS | 65.0% | |
CGTCTGGGAGGGATGGGATC+AGG | - | chr3.1:75684415-75684434 | None:intergenic | 65.0% | |
GAATTCACGCGCGACGCGCA+TGG | - | chr3.1:75684801-75684820 | None:intergenic | 65.0% | |
GAGGAGGGAGAGGGAGGAGA+CGG | - | chr3.1:75684640-75684659 | None:intergenic | 65.0% | |
GCGCGGGAGAGCAACTGTTG+TGG | + | chr3.1:75685093-75685112 | MS.gene049362:CDS | 65.0% | |
GCGGAGCCGATTGTAGGGGA+AGG | - | chr3.1:75684665-75684684 | None:intergenic | 65.0% | |
GCTACGTCGTCTGGGAGGGA+TGG | - | chr3.1:75684422-75684441 | None:intergenic | 65.0% | |
GGAGAGAGGTGGAGCGTGTG+CGG | - | chr3.1:75684592-75684611 | None:intergenic | 65.0% | |
GGGGAAGGAAGAGGAGGGAG+AGG | - | chr3.1:75684650-75684669 | None:intergenic | 65.0% | |
TGGAGCGTGTGCGGAGAGAG+AGG | - | chr3.1:75684583-75684602 | None:intergenic | 65.0% | |
!! | CGCGTGGGAGAGCGTTGGAA+GGG | + | chr3.1:75685054-75685073 | MS.gene049362:CDS | 65.0% |
CGGGGAGCCAGCGGTGGAAT+CGG | - | chr3.1:75684772-75684791 | None:intergenic | 70.0% | |
GAGGGAGAGGGAGGAGACGG+TGG | - | chr3.1:75684637-75684656 | None:intergenic | 70.0% | |
GCGCGTGAATTCGCCGCTGC+TGG | + | chr3.1:75684809-75684828 | MS.gene049362:CDS | 70.0% | |
TCACGCGCGACGCGCATGGA+GGG | - | chr3.1:75684797-75684816 | None:intergenic | 70.0% | |
TTCACGCGCGACGCGCATGG+AGG | - | chr3.1:75684798-75684817 | None:intergenic | 70.0% | |
! | AACGGCGCGTGGGAGAGCGT+TGG | + | chr3.1:75685049-75685068 | MS.gene049362:CDS | 70.0% |
! | GAGAGCGTGGGACCCGTGCA+AGG | - | chr3.1:75684454-75684473 | None:intergenic | 70.0% |
!! | CGATTCCACCGCTGGCTCCC+CGG | + | chr3.1:75684770-75684789 | MS.gene049362:CDS | 70.0% |
!! | GCGCGTGGGAGAGCGTTGGA+AGG | + | chr3.1:75685053-75685072 | MS.gene049362:CDS | 70.0% |
!! | TACGCGATGGCGGATCGCGG+TGG | + | chr3.1:75685007-75685026 | MS.gene049362:CDS | 70.0% |
CGACGCGCATGGAGGGACCG+GGG | - | chr3.1:75684790-75684809 | None:intergenic | 75.0% | |
CGCGACGCGCATGGAGGGAC+CGG | - | chr3.1:75684792-75684811 | None:intergenic | 75.0% | |
GCGACGCGCATGGAGGGACC+GGG | - | chr3.1:75684791-75684810 | None:intergenic | 75.0% | |
TGGAGGGACCGGGGAGCCAG+CGG | - | chr3.1:75684781-75684800 | None:intergenic | 75.0% | |
! | AGGGACCGGGGAGCCAGCGG+TGG | - | chr3.1:75684778-75684797 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 75684389 | 75685462 | 75684389 | ID=MS.gene049362 |
chr3.1 | mRNA | 75684389 | 75685462 | 75684389 | ID=MS.gene049362.t1;Parent=MS.gene049362 |
chr3.1 | exon | 75684389 | 75685462 | 75684389 | ID=MS.gene049362.t1.exon1;Parent=MS.gene049362.t1 |
chr3.1 | CDS | 75684389 | 75685462 | 75684389 | ID=cds.MS.gene049362.t1;Parent=MS.gene049362.t1 |
Gene Sequence |
Protein sequence |