Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014853.t1 | XP_003603366.2 | 99.4 | 159 | 1 | 0 | 1 | 159 | 33 | 191 | 1.70E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014853.t1 | Q9LFP0 | 77.7 | 157 | 35 | 0 | 1 | 157 | 33 | 189 | 2.6e-64 | 246.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014853.t1 | G7JAH8 | 99.4 | 159 | 1 | 0 | 1 | 159 | 33 | 191 | 1.2e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014853 | MS.gene045117 | PPI |
| MS.gene052207 | MS.gene014853 | PPI |
| MS.gene014853 | MS.gene75475 | PPI |
| MS.gene79217 | MS.gene014853 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014853.t1 | MTR_3g106780 | 99.371 | 159 | 1 | 0 | 1 | 159 | 33 | 191 | 1.03e-112 | 318 |
| MS.gene014853.t1 | MTR_3g106780 | 97.183 | 142 | 4 | 0 | 1 | 142 | 33 | 174 | 4.14e-96 | 275 |
| MS.gene014853.t1 | MTR_3g103010 | 76.821 | 151 | 35 | 0 | 1 | 151 | 30 | 180 | 2.74e-81 | 238 |
| MS.gene014853.t1 | MTR_3g106780 | 100.000 | 116 | 0 | 0 | 1 | 116 | 33 | 148 | 6.66e-80 | 234 |
| MS.gene014853.t1 | MTR_5g012210 | 74.834 | 151 | 38 | 0 | 1 | 151 | 32 | 182 | 1.48e-78 | 231 |
| MS.gene014853.t1 | MTR_4g101460 | 70.861 | 151 | 44 | 0 | 1 | 151 | 1 | 151 | 2.25e-74 | 220 |
| MS.gene014853.t1 | MTR_3g106780 | 77.174 | 92 | 21 | 0 | 1 | 92 | 33 | 124 | 2.79e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014853.t1 | AT5G11160 | 77.707 | 157 | 35 | 0 | 1 | 157 | 33 | 189 | 6.62e-85 | 247 |
| MS.gene014853.t1 | AT1G80050 | 75.796 | 157 | 38 | 0 | 1 | 157 | 1 | 157 | 2.43e-82 | 240 |
| MS.gene014853.t1 | AT1G80050 | 75.796 | 157 | 38 | 0 | 1 | 157 | 33 | 189 | 1.08e-81 | 239 |
| MS.gene014853.t1 | AT4G12440 | 73.856 | 153 | 40 | 0 | 1 | 153 | 30 | 182 | 3.41e-80 | 235 |
| MS.gene014853.t1 | AT4G12440 | 73.856 | 153 | 40 | 0 | 1 | 153 | 30 | 182 | 3.41e-80 | 235 |
| MS.gene014853.t1 | AT4G22570 | 73.203 | 153 | 41 | 0 | 1 | 153 | 31 | 183 | 8.81e-78 | 229 |
| MS.gene014853.t1 | AT1G27450 | 70.861 | 151 | 44 | 0 | 1 | 151 | 30 | 180 | 1.18e-75 | 224 |
| MS.gene014853.t1 | AT1G27450 | 70.861 | 151 | 44 | 0 | 1 | 151 | 30 | 180 | 1.18e-75 | 224 |
| MS.gene014853.t1 | AT1G27450 | 70.861 | 151 | 44 | 0 | 1 | 151 | 90 | 240 | 2.77e-75 | 225 |
| MS.gene014853.t1 | AT1G27450 | 60.795 | 176 | 44 | 1 | 1 | 151 | 106 | 281 | 3.46e-69 | 211 |
| MS.gene014853.t1 | AT5G11160 | 77.586 | 116 | 26 | 0 | 1 | 116 | 33 | 148 | 2.26e-61 | 187 |
| MS.gene014853.t1 | AT4G12440 | 85.075 | 67 | 10 | 0 | 1 | 67 | 30 | 96 | 5.39e-37 | 123 |
| MS.gene014853.t1 | AT4G12440 | 85.075 | 67 | 10 | 0 | 1 | 67 | 30 | 96 | 5.39e-37 | 123 |
| MS.gene014853.t1 | AT4G22570 | 79.412 | 68 | 14 | 0 | 1 | 68 | 31 | 98 | 5.39e-34 | 115 |
Find 33 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGACAGTGTAAACTTCT+TGG | 0.263599 | 3.3:-87569890 | MS.gene014853:CDS |
| CGCTGTCCAACCTGGTGAAC+GGG | 0.371582 | 3.3:-87570862 | MS.gene014853:CDS |
| TCTGCAGTTGCGTTGGGAAT+TGG | 0.405636 | 3.3:-87572393 | MS.gene014853:CDS |
| GAAGCAAGAGGGTTTGTGTT+TGG | 0.411897 | 3.3:-87572417 | MS.gene014853:CDS |
| GATTGGTGTGCCTGAGGTTA+AGG | 0.414050 | 3.3:-87570614 | MS.gene014853:intron |
| GTGGAATGTGCTTGTGTGAT+TGG | 0.438632 | 3.3:-87570631 | MS.gene014853:CDS |
| ATCGACGACTTGGTTGCAAC+AGG | 0.448378 | 3.3:-87570831 | MS.gene014853:CDS |
| TTTGGTTCTGCAGTTGCGTT+GGG | 0.461360 | 3.3:-87572399 | MS.gene014853:CDS |
| AGCTTGCGAGGTTTGCGTAA+AGG | 0.464262 | 3.3:+87572357 | None:intergenic |
| GCGCTGTCCAACCTGGTGAA+CGG | 0.478342 | 3.3:-87570863 | MS.gene014853:CDS |
| ACGCAAACCTCGCAAGCTAC+CGG | 0.479212 | 3.3:-87572352 | MS.gene014853:CDS |
| GTTTGGTTCTGCAGTTGCGT+TGG | 0.491474 | 3.3:-87572400 | MS.gene014853:CDS |
| TGCAACAGGTGGAACTTTGT+CGG | 0.495035 | 3.3:-87570817 | MS.gene014853:CDS |
| ATGCACATTTCAGTTGTTGC+TGG | 0.495656 | 3.3:-87572603 | MS.gene014853:intron |
| ACAGGTGGAACTTTGTCGGC+AGG | 0.532728 | 3.3:-87570813 | MS.gene014853:CDS |
| GGCTATAGTTATCGACGACT+TGG | 0.544698 | 3.3:-87570841 | MS.gene014853:CDS |
| CATGTCGGCGCTGTCCAACC+TGG | 0.547674 | 3.3:-87570870 | MS.gene014853:CDS |
| CGCAAACCTCGCAAGCTACC+GGG | 0.550896 | 3.3:-87572351 | MS.gene014853:intron |
| GGCTCCACAAGCACATAAAG+TGG | 0.560359 | 3.3:+87569863 | None:intergenic |
| CTGAGCCATACCTTAACCTC+AGG | 0.561630 | 3.3:+87570604 | None:intergenic |
| ATAACTATAGCCCGTTCACC+AGG | 0.563626 | 3.3:+87570852 | None:intergenic |
| ACGTGCTAAGGCTGAAGTAG+TGG | 0.569286 | 3.3:-87570650 | MS.gene014853:CDS |
| AAAGCCACTTTATGTGCTTG+TGG | 0.574929 | 3.3:-87569867 | MS.gene014853:CDS |
| GTTGTACCCGGTAGCTTGCG+AGG | 0.575231 | 3.3:+87572345 | None:intergenic |
| GACGACTTGGTTGCAACAGG+TGG | 0.588976 | 3.3:-87570828 | MS.gene014853:CDS |
| CAATTATGTAGAACGTGCTA+AGG | 0.591327 | 3.3:-87570662 | MS.gene014853:intron |
| CTATAGCCCGTTCACCAGGT+TGG | 0.604880 | 3.3:+87570856 | None:intergenic |
| TTGTGTGATTGGTGTGCCTG+AGG | 0.609251 | 3.3:-87570620 | MS.gene014853:CDS |
| ATGCAGGAATTGAAGCAAGA+GGG | 0.621946 | 3.3:-87572428 | MS.gene014853:intron |
| GACATTGTTGTTAGATCACA+AGG | 0.630489 | 3.3:-87572670 | MS.gene014853:CDS |
| TATGCAGGAATTGAAGCAAG+AGG | 0.643982 | 3.3:-87572429 | MS.gene014853:intron |
| GATTGTTTAGAAATGCATGT+CGG | 0.652967 | 3.3:-87570885 | MS.gene014853:CDS |
| AAGCATTCATCTACTTGACG+TGG | 0.677392 | 3.3:+87569842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAA+TGG | + | chr3.3:87570648-87570667 | None:intergenic | 0.0% |
| !! | TATTTATTAATAAACACTTT+CGG | - | chr3.3:87570662-87570681 | MS.gene014853:intron | 10.0% |
| !! | TTATTTATATTTATTTAGGA+GGG | - | chr3.3:87570448-87570467 | MS.gene014853:intron | 10.0% |
| !! | TTTATTTATATTTATTTAGG+AGG | - | chr3.3:87570447-87570466 | MS.gene014853:intron | 10.0% |
| !!! | AAAAGAGAAATTTTTTATTT+TGG | - | chr3.3:87570020-87570039 | MS.gene014853:intron | 10.0% |
| !!! | AAAGAGAAATTTTTTATTTT+GGG | - | chr3.3:87570021-87570040 | MS.gene014853:intron | 10.0% |
| !!! | AATAAACTCAAATAAAATTT+TGG | + | chr3.3:87570510-87570529 | None:intergenic | 10.0% |
| !!! | ATTTGTATTTATTCATTTTT+TGG | + | chr3.3:87572038-87572057 | None:intergenic | 10.0% |
| !!! | TATTTGTATTTATTCATTTT+TGG | + | chr3.3:87572039-87572058 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTGATGTATT+TGG | + | chr3.3:87570419-87570438 | None:intergenic | 15.0% |
| !! | ACAGAAATTAAATAAAAAAG+GGG | + | chr3.3:87570050-87570069 | None:intergenic | 15.0% |
| !! | ATTTATTAATAAACACTTTC+GGG | - | chr3.3:87570663-87570682 | MS.gene014853:intron | 15.0% |
| !! | CACAGAAATTAAATAAAAAA+GGG | + | chr3.3:87570051-87570070 | None:intergenic | 15.0% |
| !! | TATTTATATTTATTTAGGAG+GGG | - | chr3.3:87570449-87570468 | MS.gene014853:intron | 15.0% |
| !! | TCACAGAAATTAAATAAAAA+AGG | + | chr3.3:87570052-87570071 | None:intergenic | 15.0% |
| !! | TTCAAATAAGATTAATAACA+AGG | + | chr3.3:87572576-87572595 | None:intergenic | 15.0% |
| !!! | TTAAATTTCTATCTTGTTAT+AGG | - | chr3.3:87572175-87572194 | MS.gene014853:intron | 15.0% |
| !! | AAGTTGTATGTTATATGATA+GGG | - | chr3.3:87571278-87571297 | MS.gene014853:intron | 20.0% |
| !! | AATATATATACTATTCGGTA+CGG | - | chr3.3:87571028-87571047 | MS.gene014853:intron | 20.0% |
| !! | AATGAAACATATCAAAGTTT+AGG | + | chr3.3:87571574-87571593 | None:intergenic | 20.0% |
| !! | ACATATACTATTTAACTCAA+AGG | + | chr3.3:87571391-87571410 | None:intergenic | 20.0% |
| !! | GAGTTTATTCAAAGAATATT+AGG | - | chr3.3:87570521-87570540 | MS.gene014853:intron | 20.0% |
| !! | GCTAAATATAAGAAAAAGTT+GGG | - | chr3.3:87570355-87570374 | MS.gene014853:intron | 20.0% |
| !! | TAAATAGTATATGTTTGGTT+TGG | - | chr3.3:87571397-87571416 | MS.gene014853:intron | 20.0% |
| !! | TAAGTTGTATGTTATATGAT+AGG | - | chr3.3:87571277-87571296 | MS.gene014853:intron | 20.0% |
| !! | TGAGTTAAATAGTATATGTT+TGG | - | chr3.3:87571392-87571411 | MS.gene014853:intron | 20.0% |
| !! | TGATTTAATGTAATTAGGTT+TGG | - | chr3.3:87570069-87570088 | MS.gene014853:intron | 20.0% |
| !! | TGCTAAATATAAGAAAAAGT+TGG | - | chr3.3:87570354-87570373 | MS.gene014853:intron | 20.0% |
| !! | TTATAATTGTTCATTGAATC+TGG | - | chr3.3:87571804-87571823 | MS.gene014853:intron | 20.0% |
| !! | TTCTGTGATTTAATGTAATT+AGG | - | chr3.3:87570064-87570083 | MS.gene014853:intron | 20.0% |
| !! | TTGCCAATATATATACTATT+CGG | - | chr3.3:87571023-87571042 | MS.gene014853:intron | 20.0% |
| !!! | AAAGAAAGCATAAAGTATAT+TGG | + | chr3.3:87571839-87571858 | None:intergenic | 20.0% |
| !!! | AAGAAAGCATAAAGTATATT+GGG | + | chr3.3:87571838-87571857 | None:intergenic | 20.0% |
| !!! | AATCTTATTTGAAATCATGA+TGG | - | chr3.3:87572583-87572602 | MS.gene014853:intron | 20.0% |
| !!! | ACTTTTTCTTATATTTAGCA+CGG | + | chr3.3:87570354-87570373 | None:intergenic | 20.0% |
| !!! | CAATATTTTCAAATTGATCA+TGG | - | chr3.3:87571051-87571070 | MS.gene014853:intron | 20.0% |
| !!! | GAAAAATATTCTCTAGAATA+CGG | - | chr3.3:87571613-87571632 | MS.gene014853:intron | 20.0% |
| !!! | TGAAATTTCTATCTTGTTAT+AGG | - | chr3.3:87571987-87572006 | MS.gene014853:intron | 20.0% |
| ! | GATGTATGAATATTCAATGT+GGG | - | chr3.3:87570884-87570903 | MS.gene014853:CDS | 25.0% |
| ! | GTACCGAATAGTATATATAT+TGG | + | chr3.3:87571029-87571048 | None:intergenic | 25.0% |
| ! | TAACAAGATAGAAATTTCAG+AGG | + | chr3.3:87571986-87572005 | None:intergenic | 25.0% |
| ! | TATGTACAACAAATTTGAAG+TGG | + | chr3.3:87572299-87572318 | None:intergenic | 25.0% |
| ! | TCTGTTTAACCAAACTAATT+GGG | - | chr3.3:87571242-87571261 | MS.gene014853:intron | 25.0% |
| ! | TGATGTATGAATATTCAATG+TGG | - | chr3.3:87570883-87570902 | MS.gene014853:CDS | 25.0% |
| ! | TGATTCATACAATTTCAATC+AGG | + | chr3.3:87571182-87571201 | None:intergenic | 25.0% |
| ! | TTAAAAATGTTAAGGAGAGT+TGG | + | chr3.3:87572508-87572527 | None:intergenic | 25.0% |
| ! | TTCTGTTTAACCAAACTAAT+TGG | - | chr3.3:87571241-87571260 | MS.gene014853:intron | 25.0% |
| !! | AAACAAATTTGAAGTCCAAT+AGG | + | chr3.3:87572109-87572128 | None:intergenic | 25.0% |
| !! | ACTAAACTTTTATGTGGAAT+GGG | - | chr3.3:87570287-87570306 | MS.gene014853:intron | 25.0% |
| !! | AGAAAGCATAAAGTATATTG+GGG | + | chr3.3:87571837-87571856 | None:intergenic | 25.0% |
| !! | AGTAGTACTAAACTTTTATG+TGG | - | chr3.3:87570281-87570300 | MS.gene014853:intron | 25.0% |
| !! | ATGTTATATGATAGGGATTT+TGG | - | chr3.3:87571285-87571304 | MS.gene014853:intron | 25.0% |
| !! | CTTTGATATGTTTCATTTTC+AGG | - | chr3.3:87571577-87571596 | MS.gene014853:intron | 25.0% |
| !! | CTTTTTCTTATATTTAGCAC+GGG | + | chr3.3:87570353-87570372 | None:intergenic | 25.0% |
| !! | TACTAAACTTTTATGTGGAA+TGG | - | chr3.3:87570286-87570305 | MS.gene014853:intron | 25.0% |
| !! | TTAATGTAATTAGGTTTGGT+TGG | - | chr3.3:87570073-87570092 | MS.gene014853:intron | 25.0% |
| AAACTAATTGGGGCTTAATT+TGG | - | chr3.3:87571253-87571272 | MS.gene014853:intron | 30.0% | |
| AAATTAAGCCCCAATTAGTT+TGG | + | chr3.3:87571254-87571273 | None:intergenic | 30.0% | |
| AACAAAAAAAGTAGTGCATG+AGG | + | chr3.3:87569968-87569987 | None:intergenic | 30.0% | |
| AATAAACACTTTCGGGATAA+AGG | - | chr3.3:87570670-87570689 | MS.gene014853:intron | 30.0% | |
| ACAAAAAAAGTAGTGCATGA+GGG | + | chr3.3:87569967-87569986 | None:intergenic | 30.0% | |
| ACATCATCGTCAATAATCAT+TGG | + | chr3.3:87571447-87571466 | None:intergenic | 30.0% | |
| ACTTTCCTCTTAGATATTGT+GGG | + | chr3.3:87570803-87570822 | None:intergenic | 30.0% | |
| AGGTACTCTTAAAAGCTTAA+AGG | - | chr3.3:87572007-87572026 | MS.gene014853:intron | 30.0% | |
| ATAAGTCAAAAAATGACGCA+GGG | + | chr3.3:87571788-87571807 | None:intergenic | 30.0% | |
| ATAGATACGTTCTACAATTC+AGG | + | chr3.3:87571479-87571498 | None:intergenic | 30.0% | |
| CTGTTTAACCAAACTAATTG+GGG | - | chr3.3:87571243-87571262 | MS.gene014853:intron | 30.0% | |
| GATTGTTTAGAAATGCATGT+CGG | - | chr3.3:87571640-87571659 | MS.gene014853:intron | 30.0% | |
| TAGATACGTTCTACAATTCA+GGG | + | chr3.3:87571478-87571497 | None:intergenic | 30.0% | |
| TATAAGTCAAAAAATGACGC+AGG | + | chr3.3:87571789-87571808 | None:intergenic | 30.0% | |
| TATATTTATTTAGGAGGGGA+TGG | - | chr3.3:87570453-87570472 | MS.gene014853:intron | 30.0% | |
| TGAAATTGTATGAATCAACC+AGG | - | chr3.3:87571185-87571204 | MS.gene014853:intron | 30.0% | |
| TTCATACAATTTCAATCAGG+AGG | + | chr3.3:87571179-87571198 | None:intergenic | 30.0% | |
| TTCCATCACATAAAGTCAAT+TGG | - | chr3.3:87570747-87570766 | MS.gene014853:intron | 30.0% | |
| ! | ATATCCTTATAGACTTGCTT+AGG | - | chr3.3:87572355-87572374 | MS.gene014853:CDS | 30.0% |
| ! | CAACAAATTTGAAGTGGAAT+AGG | + | chr3.3:87572293-87572312 | None:intergenic | 30.0% |
| ! | CATCAAATTGATGATCAGAT+TGG | - | chr3.3:87571077-87571096 | MS.gene014853:intron | 30.0% |
| ! | CTGAATTATTGATAGCCTAT+TGG | - | chr3.3:87572091-87572110 | MS.gene014853:intron | 30.0% |
| ! | GTTAAGACCTTTAAGCTTTT+AGG | + | chr3.3:87572205-87572224 | None:intergenic | 30.0% |
| ! | TATCCTTATAGACTTGCTTA+GGG | - | chr3.3:87572356-87572375 | MS.gene014853:CDS | 30.0% |
| !! | AGGAATAAAACTTTTAGGTG+TGG | - | chr3.3:87571732-87571751 | MS.gene014853:intron | 30.0% |
| !!! | AATGAAGCCTTCTTTTTTCA+GGG | - | chr3.3:87572617-87572636 | MS.gene014853:CDS | 30.0% |
| !!! | TAATGAAGCCTTCTTTTTTC+AGG | - | chr3.3:87572616-87572635 | MS.gene014853:CDS | 30.0% |
| AATTGTATGAATCAACCAGG+TGG | - | chr3.3:87571188-87571207 | MS.gene014853:intron | 35.0% | |
| AGGTACTCCTAAAAGCTTAA+AGG | - | chr3.3:87572195-87572214 | MS.gene014853:intron | 35.0% | |
| AGTGAAACAAATGTATGTGC+TGG | - | chr3.3:87570945-87570964 | MS.gene014853:intron | 35.0% | |
| ATGAACAGAAATGTTGTACC+CGG | + | chr3.3:87570195-87570214 | None:intergenic | 35.0% | |
| ATGTGATGTTCATTACTGTG+TGG | - | chr3.3:87570559-87570578 | MS.gene014853:intron | 35.0% | |
| ATTACTTGTTCACTTGTGCT+CGG | + | chr3.3:87572337-87572356 | None:intergenic | 35.0% | |
| CAATTATGTAGAACGTGCTA+AGG | - | chr3.3:87571863-87571882 | MS.gene014853:intron | 35.0% | |
| CACTTTCCTCTTAGATATTG+TGG | + | chr3.3:87570804-87570823 | None:intergenic | 35.0% | |
| CTTAGCACGTTCTACATAAT+TGG | + | chr3.3:87571865-87571884 | None:intergenic | 35.0% | |
| TAACCCTAAGCAAGTCTATA+AGG | + | chr3.3:87572362-87572381 | None:intergenic | 35.0% | |
| TAAGTCAAAAAATGACGCAG+GGG | + | chr3.3:87571787-87571806 | None:intergenic | 35.0% | |
| TGGAGGTAAACGTATCTAAT+TGG | - | chr3.3:87571208-87571227 | MS.gene014853:intron | 35.0% | |
| TTGATTGAACTTAAGCACAC+TGG | + | chr3.3:87571325-87571344 | None:intergenic | 35.0% | |
| TTTCTTATATTTAGCACGGG+AGG | + | chr3.3:87570350-87570369 | None:intergenic | 35.0% | |
| ! | AACTTTTATGTGGAATGGGA+TGG | - | chr3.3:87570291-87570310 | MS.gene014853:intron | 35.0% |
| ! | AGCCAATTGACTTTATGTGA+TGG | + | chr3.3:87570752-87570771 | None:intergenic | 35.0% |
| ! | GACATTGTTGTTAGATCACA+AGG | - | chr3.3:87569855-87569874 | MS.gene014853:CDS | 35.0% |
| ! | TCGGCAGGAATAAAACTTTT+AGG | - | chr3.3:87571727-87571746 | MS.gene014853:intron | 35.0% |
| ! | TTGTTCATTGAATCTGGTTC+TGG | - | chr3.3:87571810-87571829 | MS.gene014853:intron | 35.0% |
| ! | TTTTCCTCTTGATCTGCATT+GGG | - | chr3.3:87570995-87571014 | MS.gene014853:intron | 35.0% |
| ! | TTTTTCCTCTTGATCTGCAT+TGG | - | chr3.3:87570994-87571013 | MS.gene014853:intron | 35.0% |
| !! | ATATTGTGGGCTAGTTAACT+AGG | + | chr3.3:87570790-87570809 | None:intergenic | 35.0% |
| !! | TATATGTTTGGTTTGGTAGC+TGG | - | chr3.3:87571404-87571423 | MS.gene014853:intron | 35.0% |
| AAAAAAGTAGTGCATGAGGG+AGG | + | chr3.3:87569964-87569983 | None:intergenic | 40.0% | |
| AAAAAGTAGTGCATGAGGGA+GGG | + | chr3.3:87569963-87569982 | None:intergenic | 40.0% | |
| AAGCATTCATCTACTTGACG+TGG | + | chr3.3:87572686-87572705 | None:intergenic | 40.0% | |
| ACACTGTCCCTGAAAAAAGA+AGG | + | chr3.3:87572627-87572646 | None:intergenic | 40.0% | |
| ACTAGCCCACAATATCTAAG+AGG | - | chr3.3:87570795-87570814 | MS.gene014853:intron | 40.0% | |
| AGGAGTGATCAAGTTACTTC+AGG | + | chr3.3:87571159-87571178 | None:intergenic | 40.0% | |
| ATCAATGATGTGCGGTGTAA+AGG | + | chr3.3:87572450-87572469 | None:intergenic | 40.0% | |
| ATGCACATTTCAGTTGTTGC+TGG | - | chr3.3:87569922-87569941 | MS.gene014853:intron | 40.0% | |
| ATGCAGGAATTGAAGCAAGA+GGG | - | chr3.3:87570097-87570116 | MS.gene014853:intron | 40.0% | |
| CAAGTTTCAGCAGCTAAAAG+TGG | + | chr3.3:87570259-87570278 | None:intergenic | 40.0% | |
| CATTTCAGTTGTTGCTGGTA+TGG | - | chr3.3:87569927-87569946 | MS.gene014853:intron | 40.0% | |
| GGAAAAGGATCAATGATGTG+CGG | + | chr3.3:87572458-87572477 | None:intergenic | 40.0% | |
| TATGCAGGAATTGAAGCAAG+AGG | - | chr3.3:87570096-87570115 | MS.gene014853:intron | 40.0% | |
| TGATGTTCATTACTGTGTGG+AGG | - | chr3.3:87570562-87570581 | MS.gene014853:intron | 40.0% | |
| TTACTTGTTCACTTGTGCTC+GGG | + | chr3.3:87572336-87572355 | None:intergenic | 40.0% | |
| TTATATTTAGCACGGGAGGA+GGG | + | chr3.3:87570346-87570365 | None:intergenic | 40.0% | |
| TTCTCCTGTTGTCGATATGA+GGG | - | chr3.3:87572398-87572417 | MS.gene014853:CDS | 40.0% | |
| ! | AAAGCCACTTTATGTGCTTG+TGG | - | chr3.3:87572658-87572677 | MS.gene014853:CDS | 40.0% |
| ! | AGGGGATGGAGTATTATCTT+TGG | - | chr3.3:87570467-87570486 | MS.gene014853:intron | 40.0% |
| ! | ATTAGGTTTGGTTGGTATGC+AGG | - | chr3.3:87570081-87570100 | MS.gene014853:intron | 40.0% |
| ! | GCTGGTATTGTTGCTTAGTT+TGG | - | chr3.3:87570963-87570982 | MS.gene014853:intron | 40.0% |
| ! | GTCTTTGTTTGCATTCACAG+TGG | + | chr3.3:87571531-87571550 | None:intergenic | 40.0% |
| ! | TGTGATGGAACAACCAAAGT+AGG | + | chr3.3:87570737-87570756 | None:intergenic | 40.0% |
| ATAACTATAGCCCGTTCACC+AGG | + | chr3.3:87571676-87571695 | None:intergenic | 45.0% | |
| CAGGGACAGTGTAAACTTCT+TGG | - | chr3.3:87572635-87572654 | MS.gene014853:CDS | 45.0% | |
| CTTATATTTAGCACGGGAGG+AGG | + | chr3.3:87570347-87570366 | None:intergenic | 45.0% | |
| CTTCTCCTGTTGTCGATATG+AGG | - | chr3.3:87572397-87572416 | MS.gene014853:CDS | 45.0% | |
| GAAGCAAGAGGGTTTGTGTT+TGG | - | chr3.3:87570108-87570127 | MS.gene014853:intron | 45.0% | |
| GGAACAACCAAAGTAGGACA+AGG | + | chr3.3:87570731-87570750 | None:intergenic | 45.0% | |
| GGCTATAGTTATCGACGACT+TGG | - | chr3.3:87571684-87571703 | MS.gene014853:intron | 45.0% | |
| GTGGAATGTGCTTGTGTGAT+TGG | - | chr3.3:87571894-87571913 | MS.gene014853:intron | 45.0% | |
| TAGATACGTTTACCTCCACC+TGG | + | chr3.3:87571206-87571225 | None:intergenic | 45.0% | |
| TGAGTTATTCCACTGTGCTG+CGG | - | chr3.3:87571501-87571520 | MS.gene014853:intron | 45.0% | |
| TGCAACAGGTGGAACTTTGT+CGG | - | chr3.3:87571708-87571727 | MS.gene014853:intron | 45.0% | |
| TGTATGAATCAACCAGGTGG+AGG | - | chr3.3:87571191-87571210 | MS.gene014853:intron | 45.0% | |
| TTAAGGAGAGTTGGATCTCC+AGG | + | chr3.3:87572499-87572518 | None:intergenic | 45.0% | |
| TTGACCCAATGCAGATCAAG+AGG | + | chr3.3:87571002-87571021 | None:intergenic | 45.0% | |
| TTTCGGGATAAAGGCTGTCA+TGG | - | chr3.3:87570679-87570698 | MS.gene014853:intron | 45.0% | |
| !! | TTTGGTTCTGCAGTTGCGTT+GGG | - | chr3.3:87570126-87570145 | MS.gene014853:intron | 45.0% |
| !! | AAATAAATATAAATAAAGTT+AGG | + | chr3.3:87570444-87570463 | None:intergenic | 5.0% |
| !!! | AACTTTATTTATATTTATTT+AGG | - | chr3.3:87570444-87570463 | MS.gene014853:intron | 5.0% |
| !!! | ATTTTTTATTAAAAATGTTA+AGG | + | chr3.3:87572516-87572535 | None:intergenic | 5.0% |
| ACACCAACCCCGTTGTCAAA+TGG | + | chr3.3:87570318-87570337 | None:intergenic | 50.0% | |
| ACGTGCTAAGGCTGAAGTAG+TGG | - | chr3.3:87571875-87571894 | MS.gene014853:intron | 50.0% | |
| AGCTTGCGAGGTTTGCGTAA+AGG | + | chr3.3:87570171-87570190 | None:intergenic | 50.0% | |
| CACCAACCCCGTTGTCAAAT+GGG | + | chr3.3:87570317-87570336 | None:intergenic | 50.0% | |
| CTGAGCCATACCTTAACCTC+AGG | + | chr3.3:87571924-87571943 | None:intergenic | 50.0% | |
| GATTGGTGTGCCTGAGGTTA+AGG | - | chr3.3:87571911-87571930 | MS.gene014853:intron | 50.0% | |
| GGCTCCACAAGCACATAAAG+TGG | + | chr3.3:87572665-87572684 | None:intergenic | 50.0% | |
| GTAGCCCTCATATCGACAAC+AGG | + | chr3.3:87572405-87572424 | None:intergenic | 50.0% | |
| GTGTGCCTGAGGTTAAGGTA+TGG | - | chr3.3:87571916-87571935 | MS.gene014853:intron | 50.0% | |
| TCTGCAGTTGCGTTGGGAAT+TGG | - | chr3.3:87570132-87570151 | MS.gene014853:intron | 50.0% | |
| TGGGATGGCCCATTTGACAA+CGG | - | chr3.3:87570306-87570325 | MS.gene014853:intron | 50.0% | |
| TGTCGATATGAGGGCTACGT+TGG | - | chr3.3:87572407-87572426 | MS.gene014853:CDS | 50.0% | |
| TTGTGTGATTGGTGTGCCTG+AGG | - | chr3.3:87571905-87571924 | MS.gene014853:intron | 50.0% | |
| ! | AAAGGCTGTCATGGTCTTGC+TGG | - | chr3.3:87570688-87570707 | MS.gene014853:intron | 50.0% |
| ! | AAGGCTGTCATGGTCTTGCT+GGG | - | chr3.3:87570689-87570708 | MS.gene014853:intron | 50.0% |
| ! | GGAAAGGCCTTGTCCTACTT+TGG | - | chr3.3:87570721-87570740 | MS.gene014853:intron | 50.0% |
| !! | ATCGACGACTTGGTTGCAAC+AGG | - | chr3.3:87571694-87571713 | MS.gene014853:intron | 50.0% |
| !! | GTTTGGTTCTGCAGTTGCGT+TGG | - | chr3.3:87570125-87570144 | MS.gene014853:intron | 50.0% |
| ACAGGTGGAACTTTGTCGGC+AGG | - | chr3.3:87571712-87571731 | MS.gene014853:intron | 55.0% | |
| ACCAAGGCAGGGTCAGGAAA+AGG | + | chr3.3:87572473-87572492 | None:intergenic | 55.0% | |
| ACGCAAACCTCGCAAGCTAC+CGG | - | chr3.3:87570173-87570192 | MS.gene014853:intron | 55.0% | |
| CTATAGCCCGTTCACCAGGT+TGG | + | chr3.3:87571672-87571691 | None:intergenic | 55.0% | |
| GGATGGCCCATTTGACAACG+GGG | - | chr3.3:87570308-87570327 | MS.gene014853:intron | 55.0% | |
| GGGATGGCCCATTTGACAAC+GGG | - | chr3.3:87570307-87570326 | MS.gene014853:intron | 55.0% | |
| TGCTGGGACTGTGTGTGGAA+AGG | - | chr3.3:87570705-87570724 | MS.gene014853:intron | 55.0% | |
| TTGGATCTCCAGGCACACCA+AGG | + | chr3.3:87572489-87572508 | None:intergenic | 55.0% | |
| ! | TCCTTTTCCTGACCCTGCCT+TGG | - | chr3.3:87572469-87572488 | MS.gene014853:intron | 55.0% |
| !! | GACGACTTGGTTGCAACAGG+TGG | - | chr3.3:87571697-87571716 | MS.gene014853:intron | 55.0% |
| AGTGGAATGCCGCAGCACAG+TGG | + | chr3.3:87571513-87571532 | None:intergenic | 60.0% | |
| ATCTCCAGGCACACCAAGGC+AGG | + | chr3.3:87572485-87572504 | None:intergenic | 60.0% | |
| CGCAAACCTCGCAAGCTACC+GGG | - | chr3.3:87570174-87570193 | MS.gene014853:intron | 60.0% | |
| CGCTGTCCAACCTGGTGAAC+GGG | - | chr3.3:87571663-87571682 | MS.gene014853:intron | 60.0% | |
| GCGCTGTCCAACCTGGTGAA+CGG | - | chr3.3:87571662-87571681 | MS.gene014853:intron | 60.0% | |
| GGCCCATTTGACAACGGGGT+TGG | - | chr3.3:87570312-87570331 | MS.gene014853:intron | 60.0% | |
| GGTCTTGCTGGGACTGTGTG+TGG | - | chr3.3:87570700-87570719 | MS.gene014853:intron | 60.0% | |
| TCTCCAGGCACACCAAGGCA+GGG | + | chr3.3:87572484-87572503 | None:intergenic | 60.0% | |
| ! | GTTGTACCCGGTAGCTTGCG+AGG | + | chr3.3:87570183-87570202 | None:intergenic | 60.0% |
| AGGCACACCAAGGCAGGGTC+AGG | + | chr3.3:87572479-87572498 | None:intergenic | 65.0% | |
| CATGTCGGCGCTGTCCAACC+TGG | - | chr3.3:87571655-87571674 | MS.gene014853:intron | 65.0% | |
| ! | TGACCCTGCCTTGGTGTGCC+TGG | - | chr3.3:87572478-87572497 | MS.gene014853:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87569838 | 87572709 | 87569838 | ID=MS.gene014853 |
| chr3.3 | mRNA | 87569838 | 87572709 | 87569838 | ID=MS.gene014853.t1;Parent=MS.gene014853 |
| chr3.3 | exon | 87572604 | 87572709 | 87572604 | ID=MS.gene014853.t1.exon1;Parent=MS.gene014853.t1 |
| chr3.3 | CDS | 87572604 | 87572709 | 87572604 | ID=cds.MS.gene014853.t1;Parent=MS.gene014853.t1 |
| chr3.3 | exon | 87572352 | 87572444 | 87572352 | ID=MS.gene014853.t1.exon2;Parent=MS.gene014853.t1 |
| chr3.3 | CDS | 87572352 | 87572444 | 87572352 | ID=cds.MS.gene014853.t1;Parent=MS.gene014853.t1 |
| chr3.3 | exon | 87570799 | 87570948 | 87570799 | ID=MS.gene014853.t1.exon3;Parent=MS.gene014853.t1 |
| chr3.3 | CDS | 87570799 | 87570948 | 87570799 | ID=cds.MS.gene014853.t1;Parent=MS.gene014853.t1 |
| chr3.3 | exon | 87570615 | 87570673 | 87570615 | ID=MS.gene014853.t1.exon4;Parent=MS.gene014853.t1 |
| chr3.3 | CDS | 87570615 | 87570673 | 87570615 | ID=cds.MS.gene014853.t1;Parent=MS.gene014853.t1 |
| chr3.3 | exon | 87569838 | 87569909 | 87569838 | ID=MS.gene014853.t1.exon5;Parent=MS.gene014853.t1 |
| chr3.3 | CDS | 87569838 | 87569909 | 87569838 | ID=cds.MS.gene014853.t1;Parent=MS.gene014853.t1 |
| Gene Sequence |
| Protein sequence |
