AlfalfaGEDB | MS.gene045117

M. sativa cultivar XinJiangDaYe / MS.gene045117

KEGG: K01953
GO: GO:0003674 GO:0003824 GO:0004066 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00733.24 PF13537.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045117.t1	XP_003601953.1	98.6	570	8	0	1	570	1	570	0.00E+00	1181

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045117.t1	Q9LV77	85.1	556	83	0	1	556	1	556	3.8e-299	1028.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045117.t1	G7J3R9	98.6	570	8	0	1	570	1	570	0.0e+00	1181.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009829	MS.gene045117	PPI
MS.gene014008	MS.gene045117	PPI
MS.gene014853	MS.gene045117	PPI
MS.gene017760	MS.gene045117	PPI
MS.gene035805	MS.gene045117	PPI
MS.gene045117	MS.gene03964	PPI
MS.gene045117	MS.gene072874	PPI
MS.gene045117	MS.gene80238	PPI
MS.gene045117	MS.gene048489	PPI
MS.gene045117	MS.gene008693	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045117.t1	MTR_3g087220	98.596	570	8	0	1	570	1	570	0.0	1182
MS.gene045117.t1	MTR_5g071360	77.878	556	123	0	1	556	1	556	0.0	938
MS.gene045117.t1	MTR_3g464580	74.517	569	142	2	1	566	1	569	0.0	913
MS.gene045117.t1	MTR_5g071360	77.255	510	116	0	1	510	1	510	0.0	855
MS.gene045117.t1	MTR_3g464580	75.639	509	123	1	1	508	1	509	0.0	833
MS.gene045117.t1	MTR_3g464580	76.562	448	103	2	1	447	1	447	0.0	736
MS.gene045117.t1	MTR_5g069310	69.298	114	35	0	443	556	2	115	1.67e-51	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene045117.t1	AT5G10240	85.199	554	82	0	1	554	1	554	1021
MS.gene045117.t1	AT5G65010	85.455	550	80	0	1	550	1	550	1018
MS.gene045117.t1	AT5G65010	85.299	551	80	1	1	550	1	551	1015
MS.gene045117.t1	AT5G10240	84.657	554	84	1	1	554	1	553	1010
MS.gene045117.t1	AT3G47340	75.221	565	139	1	1	565	1	564	934
MS.gene045117.t1	AT3G47340	76.378	508	120	0	1	508	1	508	856
MS.gene045117.t1	AT3G47340	77.218	417	95	0	1	417	1	417	714
MS.gene045117.t1	AT3G47340	77.483	302	68	0	116	417	1	302	520

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Find 135 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAAGAGCCCGACAA+TGG	0.557915	3.4:+81037896	MS.gene045117:CDS
AAAATGGTTCTGTCTGGAGA+AGG	0.606208	3.4:+81036463	MS.gene045117:CDS
AAACACTCCTACCACAAAAG+AGG	0.557038	3.4:+81037530	MS.gene045117:CDS
AAAGAGGTAGCAAATTATCT+TGG	0.479356	3.4:+81036189	MS.gene045117:CDS
AAATCTCATCAATTTCGAAC+TGG	0.470336	3.4:+81033799	MS.gene045117:CDS
AACACTCCTACCACAAAAGA+GGG	0.564176	3.4:+81037531	MS.gene045117:CDS
AACTTCGGCTTGGGGTATAG+AGG	0.510802	3.4:+81036740	MS.gene045117:CDS
AAGGCCTCACGCAAAACCGT+TGG	0.575646	3.4:-81035231	None:intergenic
AAGTGACGAGTCCAGTCCTC+CGG	0.552950	3.4:-81035945	None:intergenic
AAGTTGATTTATTGGCTCTC+AGG	0.481018	3.4:-81036722	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGGTAGCAAATTATCT+TGG	+	chr3.4:81036189-81036208	MS.gene045117:CDS	30.0%
AAATCTCATCAATTTCGAAC+TGG	+	chr3.4:81033799-81033818	MS.gene045117:CDS	30.0%
AAATTCCAATCATGAGCTTA+TGG	-	chr3.4:81035721-81035740	None:intergenic	30.0%
AAGACTATACAATTCACCTT+TGG	-	chr3.4:81037591-81037610	None:intergenic	30.0%
AATAAATGGTTCAATTCGAG+CGG	-	chr3.4:81034148-81034167	None:intergenic	30.0%
AATAATTCAATGGATGAGAC+AGG	-	chr3.4:81035274-81035293	None:intergenic	30.0%
AATCATCTGACAATCACAAT+TGG	-	chr3.4:81034286-81034305	None:intergenic	30.0%
AATTCCAATCATGAGCTTAT+GGG	-	chr3.4:81035720-81035739	None:intergenic	30.0%
AGATAAAGCCTGATATTGAA+AGG	+	chr3.4:81037151-81037170	MS.gene045117:intron	30.0%
AGTAGAAGGAGAAAAACAAA+TGG	-	chr3.4:81035080-81035099	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	81033422	81037928	81033422	ID=MS.gene045117
chr3.4	mRNA	81033422	81037928	81033422	ID=MS.gene045117.t1;Parent=MS.gene045117
chr3.4	exon	81033422	81033640	81033422	ID=MS.gene045117.t1.exon1;Parent=MS.gene045117.t1
chr3.4	CDS	81033422	81033640	81033422	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81033754	81033849	81033754	ID=MS.gene045117.t1.exon2;Parent=MS.gene045117.t1
chr3.4	CDS	81033754	81033849	81033754	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81033937	81034078	81033937	ID=MS.gene045117.t1.exon3;Parent=MS.gene045117.t1
chr3.4	CDS	81033937	81034078	81033937	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81034923	81035018	81034923	ID=MS.gene045117.t1.exon4;Parent=MS.gene045117.t1
chr3.4	CDS	81034923	81035018	81034923	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81035166	81035260	81035166	ID=MS.gene045117.t1.exon5;Parent=MS.gene045117.t1
chr3.4	CDS	81035166	81035260	81035166	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81035896	81036057	81035896	ID=MS.gene045117.t1.exon6;Parent=MS.gene045117.t1
chr3.4	CDS	81035896	81036057	81035896	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81036165	81036245	81036165	ID=MS.gene045117.t1.exon7;Parent=MS.gene045117.t1
chr3.4	CDS	81036165	81036245	81036165	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81036346	81036567	81036346	ID=MS.gene045117.t1.exon8;Parent=MS.gene045117.t1
chr3.4	CDS	81036346	81036567	81036346	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81036696	81036830	81036696	ID=MS.gene045117.t1.exon9;Parent=MS.gene045117.t1
chr3.4	CDS	81036696	81036830	81036696	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81037153	81037233	81037153	ID=MS.gene045117.t1.exon10;Parent=MS.gene045117.t1
chr3.4	CDS	81037153	81037233	81037153	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81037317	81037403	81037317	ID=MS.gene045117.t1.exon11;Parent=MS.gene045117.t1
chr3.4	CDS	81037317	81037403	81037317	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81037486	81037593	81037486	ID=MS.gene045117.t1.exon12;Parent=MS.gene045117.t1
chr3.4	CDS	81037486	81037593	81037486	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1
chr3.4	exon	81037740	81037928	81037740	ID=MS.gene045117.t1.exon13;Parent=MS.gene045117.t1
chr3.4	CDS	81037740	81037928	81037740	ID=cds.MS.gene045117.t1;Parent=MS.gene045117.t1

Gene Sequence

>MS.gene045117

ATGTGCGGAATCTTAGCAGTGTTGGGTGTGGTCGACAATTCTCAGTCCAAACGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGACATAGAGGACCTGATTGGAGTGGTTTGCATTGTCATCAAGATTGTTACCTCGCTCATCAACGTCTTGCTATTGTGGACCCTACTTCTGGAGATCAACCTCTTTACAACTATGACAAGACCGTTATTGTCACCGTACGTATCTTATCTTCTATCTAATCTGCTTGTTCTTTTTTTTTTTTATTAAATTGTTTATAATTTGCATGCAGAATTTTGATTTTGTCACATTTTCTGTTCTATGGCGTTAGGTTAATGGGGAGATATACAACCACAAAAAATTGAGACAGAAACTGAAATCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTGTAAGTGTTTTCTAGAAGGATTATGTTTATTTCACTGTTTTTTATATTATTATGACGAATGATGACTAACTATTACGATGTGATTAGTATGAAGAATATGGAGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGTTGGGGCCATGATGGTATGTGGTTGCTGCTTCTTATTGTAACATTTTTACGTTTTAACCTCAACCTCGTTGGTGTCTAAGCCGCTCGAATTGAACCATTTATTGTGCAATTTAAAGCCAATTCCAGAGATGCATTTTGGACATGTAGTGTGCTAAATTGCTAAACTGAAGTGAATTTTATTCGTATAGATTGCCTGTGTAATTTTTTTAAACTGTTAACCAATTGTGATTGTCAGATGATTAAAAACATTTGACTTTCATAACTACTTAATTTCAAAGTCATACATTTAATTGGCAGTGATTTGTTGACAGTGTAAAACTTTTTACATTGAAATTGAAATAAATCATTAATGTATGAGTTCCTATATAAAATTTGTAGCTTCAAATCAATGTATTTTTGTCGTATGTTTTGTAGTATTAGACTATTAGTAAACTTGATGTTGTTTACCCTTTTTTTTTTTGAATAAATTGATGTTGTTTACCCTTAATTGCATAGCACATGGATTTTTATAACTCAAGTGAATGTACTAAAGATTGAAAGTAAAATACTAATTTCTTACTAAATTATGAATGATATCCTGCTACATATCTGTATAAACATTAAGGATGACTTTGTTATATCTGCCGATGCTTCTAATGTAGAGGAACATGTCCTAATTTTTTCAAGGAAATGTAATGAAGCATCTCTTTATCTCTCCCCCCCTCTAGCATACACAGGCATTAATCTTTTACATTCGGCAGTTGCATGATTTTAGGATAGAAAATAAAGAGTTGTCTATACATTTGGTTATGTATTCATGGTATGATTGTTGTTCTTGAATTAGATATATCATTTATGGAAGGGCTGATTATTTTGCAGGATCAATATGGTTTGCGTCTGAAATGAAAGCGCTGATTGATGATTGTGAGCAATTTATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGTAAAAATAATGCAACTCGTTATTTTTTCCGATTATGGTTACTCTTGTAAACTCAATTCCATTTGTTTTTCTCCTTCTACTGTCTAAATTTTACTCCAAGATAAGATACACACTTACATATCCTGTTAAACTTTGCTGTCTTTGCAGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACGCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGTTAGCTATTCCTGTCTCATCCATTGAATTATTTCATCATTTGAACTTTAGAATGTCCAGTTCTGCTTGGTGTTGTTATGTAGTGGCTATAGCACATTAGCATAGTTGAATTTGAACAAATCACTATCGTTTCACAATACACTATCTGTCTATTTAGCACAAAATGTTGTCAAATAGCGGCAAAAGTGAGCTATGCCACTGTTTTGTAGCGGAATTCGAACAAACTGCTATTTTCCGCATTCCATAATTGACAGCACTGGTTCTACTGCATTTTCTTAAAGAACTGCTTCAGACTATTTTCAACTCTCCCTGGAATTTTAAAGCATCCTCACTTTTATTTTGTCTATAATATCATTTGCAACAAACTTAGGAGTGTTATGTCATAACTAGAGGTGTTGAAACTGAAATACACCATGAAATGCAACTTAATGCCTTTTGAGAAATTATACGTAAATTCCCATAAGCTCATGATTGGAATTTGGAGCTGATTACTATGTTCTAGTTGGTGAAGAAAAAATAATATCATTTTTATTCTTTTCACATTTAGTGACTTCCTTTGATGTAGTTGATACTAAGTCATAACTCTACGAACATCCTTTTTAACTTTTTCTTGGTTATACTGTGATATCATGCAGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGTGTTCTGTTGTCCGGAGGACTGGACTCGTCACTTGTTGCTGCAGTGGCCAATAGATATTTGGCTGATACTGACACTGCCCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTATAGAGGTCTGGACTATTCCCTCATGGTTAAAATGAGCTGTATTATACTTCTTCAGTCCATAAGTAATAGTAGTTATATGCTTCATGACATGACTTAATTTTCCCCCATTCAGGGCTCTCCGGATTTGAGAGCCGCAAAAGAGGTAGCAAATTATCTTGGCACTTGCCACCACGAACTTCATTTCACAGTTCAGGTGACGATTTCTCCCTTTATCTACCATTTTACCTTGAGCAGACGAGATTTTTATTGCTAGCTCGAAGGTAATCTAATATTCTATTTTCGCTATATATCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTGTCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTGTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAGTAATATACCATAATTCTTGTGCTTATCCCCATATTTTTATGTAATTATTATGTGCATCTTTATCTCTTCATTCCTGTGTACTTTTACCCGTTTATTCAAGTTTTTGGTGTCTTTGATGATTTGACAGATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCGGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACTGCCATGGATATCGATCCGGAGTGGAAAATGGTATTGTAACTTTACTTCTTTCTTGGTGTTCATCTCGTCATGCAGCATAAGAGGCTGAGCTATAGGCTGTCTTATGATTGGGCTGCCTGCATTGTTGATTGAACATTGAGATTATGTTAACTTGCAGTTAAATAAATTCATATGTCATTTCAACTTTCTGCTTTTGTTTAAATGTTCCAGTTTTCTTGTAAAATAAATTTGTCTGTGGACAGTTCTAAGTTTCTAACAGATCTTTGTGAAATTGAATTTACTAGTTAGTGAAGTTAATCTTATTAACTTCATTTTTTTTATCACCTCATGAAATTAACGACAAATTGCACAGATAAAGCCTGATATTGAAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATGAGAATCCATATTTGCCAAAGGTTTGTATCAATCAACTTCTGCATTATGCTTGTTCGTATGTCTTGAAGGATTTCTGAAATAATTTTATTCTTCTATTTTTCAGCACATATTGTACAGGCAGAAGGAACAGTTCAGCGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAACGAACAAGTAGGCTCTAACCTGTGACATTGAACTGAATAACTCATTTTTATAGAATTCCATTGACATTATATACTTGATAAATGGCCAGGTCACAGACGCAATGCTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGGTGAATTGTATAGTCTTTTGCATCTTAAAATAATATATACCTTTTCATCATAACCTTGACCAATTTTAAATTTGAACATGAACTTGTTTACAAATTTCGATCATGCCAAACCACTTGACTATGCATGAACCATTTCATTTCAACAGGGTGCTGCCAGGTCAACAGTTCCAGGAGGCCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGACCCTTCAGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATACAAGGATGCAGTAGATATCAAAATAAAAGAGCCCGACAATGGATCCCTCTAA

Protein sequence

>MS.gene045117.t1

MCGILAVLGVVDNSQSKRARIIELSRRLRHRGPDWSGLHCHQDCYLAHQRLAIVDPTSGDQPLYNYDKTVIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALIDDCEQFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSTRYDPTVLREAFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLADTDTARQWGSQLHTFCIGIEGSPDLRAAKEVANYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMDIDPEWKMIKPDIERIEKWVLRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANEQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKGAARSTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHAAAYKDAVDIKIKEPDNGSL