Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015179.t1 | AES94654.2 | 98.5 | 839 | 12 | 1 | 3 | 840 | 25 | 863 | 0.00E+00 | 1481.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015179.t1 | P93831 | 57.0 | 896 | 307 | 12 | 7 | 840 | 23 | 902 | 5.1e-244 | 845.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015179.t1 | G7K5B7 | 98.5 | 839 | 12 | 1 | 3 | 840 | 25 | 863 | 0.0e+00 | 1481.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene015179.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene04418 | MS.gene015179 | PPI |
MS.gene05640 | MS.gene015179 | PPI |
MS.gene04079 | MS.gene015179 | PPI |
MS.gene08109 | MS.gene015179 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015179.t1 | MTR_5g016870 | 98.451 | 839 | 12 | 1 | 3 | 840 | 25 | 863 | 0.0 | 1701 |
MS.gene015179.t1 | MTR_1g086980 | 47.738 | 840 | 367 | 12 | 20 | 838 | 39 | 827 | 0.0 | 740 |
MS.gene015179.t1 | MTR_1g086980 | 47.738 | 840 | 367 | 12 | 20 | 838 | 19 | 807 | 0.0 | 740 |
MS.gene015179.t1 | MTR_1g086980 | 47.738 | 840 | 367 | 12 | 20 | 838 | 29 | 817 | 0.0 | 740 |
MS.gene015179.t1 | MTR_1g086980 | 47.763 | 827 | 360 | 12 | 33 | 838 | 1 | 776 | 0.0 | 727 |
MS.gene015179.t1 | MTR_1g086980 | 51.156 | 735 | 304 | 10 | 125 | 838 | 55 | 755 | 0.0 | 717 |
MS.gene015179.t1 | MTR_1g086980 | 46.026 | 780 | 351 | 11 | 20 | 778 | 29 | 759 | 0.0 | 655 |
MS.gene015179.t1 | MTR_1g086980 | 48.865 | 661 | 283 | 10 | 199 | 838 | 1 | 627 | 0.0 | 603 |
MS.gene015179.t1 | MTR_1g086980 | 42.254 | 710 | 340 | 11 | 20 | 708 | 29 | 689 | 4.51e-179 | 532 |
MS.gene015179.t1 | MTR_1g086980 | 45.455 | 605 | 277 | 9 | 125 | 708 | 55 | 627 | 5.24e-171 | 509 |
MS.gene015179.t1 | MTR_1g086980 | 40.361 | 664 | 327 | 10 | 20 | 662 | 29 | 644 | 6.27e-153 | 463 |
MS.gene015179.t1 | MTR_7g055660 | 58.630 | 365 | 141 | 8 | 479 | 839 | 373 | 731 | 2.92e-135 | 420 |
MS.gene015179.t1 | MTR_7g055660 | 31.447 | 318 | 195 | 5 | 2 | 319 | 15 | 309 | 7.49e-45 | 173 |
MS.gene015179.t1 | MTR_7g109560 | 53.165 | 395 | 159 | 7 | 459 | 838 | 377 | 760 | 4.74e-123 | 389 |
MS.gene015179.t1 | MTR_7g109560 | 35.017 | 297 | 165 | 4 | 20 | 316 | 79 | 347 | 3.40e-54 | 201 |
MS.gene015179.t1 | MTR_1g008230 | 33.974 | 156 | 96 | 3 | 672 | 820 | 595 | 750 | 3.86e-21 | 99.4 |
MS.gene015179.t1 | MTR_1g008230 | 33.974 | 156 | 96 | 3 | 672 | 820 | 873 | 1028 | 6.21e-21 | 99.4 |
MS.gene015179.t1 | MTR_2g036060 | 41.129 | 124 | 70 | 2 | 687 | 807 | 1052 | 1175 | 9.36e-21 | 99.0 |
MS.gene015179.t1 | MTR_2g036060 | 41.129 | 124 | 70 | 2 | 687 | 807 | 1027 | 1150 | 9.83e-21 | 98.6 |
MS.gene015179.t1 | MTR_1g098370 | 35.714 | 168 | 93 | 3 | 650 | 808 | 56 | 217 | 2.86e-20 | 95.5 |
MS.gene015179.t1 | MTR_1g098000 | 35.714 | 168 | 93 | 3 | 650 | 808 | 53 | 214 | 3.93e-20 | 95.1 |
MS.gene015179.t1 | MTR_3g091310 | 36.029 | 136 | 80 | 3 | 692 | 820 | 828 | 963 | 8.93e-20 | 95.5 |
MS.gene015179.t1 | MTR_3g091310 | 36.029 | 136 | 80 | 3 | 692 | 820 | 922 | 1057 | 9.81e-20 | 95.5 |
MS.gene015179.t1 | MTR_7g021365 | 39.669 | 121 | 70 | 2 | 690 | 807 | 904 | 1024 | 1.60e-18 | 91.7 |
MS.gene015179.t1 | MTR_8g027725 | 32.353 | 136 | 90 | 2 | 677 | 810 | 793 | 928 | 2.12e-18 | 90.9 |
MS.gene015179.t1 | MTR_8g027725 | 32.353 | 136 | 90 | 2 | 677 | 810 | 778 | 913 | 2.17e-18 | 90.9 |
MS.gene015179.t1 | MTR_8g064240 | 49.333 | 75 | 38 | 0 | 754 | 828 | 1 | 75 | 3.62e-18 | 80.5 |
MS.gene015179.t1 | MTR_7g117355 | 34.559 | 136 | 82 | 3 | 692 | 820 | 823 | 958 | 6.99e-18 | 89.4 |
MS.gene015179.t1 | MTR_1g012890 | 33.071 | 127 | 79 | 1 | 687 | 807 | 219 | 345 | 1.55e-16 | 82.8 |
MS.gene015179.t1 | MTR_1g012910 | 30.178 | 169 | 104 | 3 | 653 | 807 | 480 | 648 | 6.59e-16 | 82.4 |
MS.gene015179.t1 | MTR_0071s0100 | 31.707 | 123 | 82 | 1 | 687 | 807 | 206 | 328 | 8.47e-16 | 80.9 |
MS.gene015179.t1 | MTR_1g012910 | 32.283 | 127 | 80 | 1 | 687 | 807 | 359 | 485 | 9.91e-16 | 81.6 |
MS.gene015179.t1 | MTR_8g064320 | 59.677 | 62 | 22 | 2 | 779 | 838 | 10 | 70 | 4.22e-15 | 72.4 |
MS.gene015179.t1 | MTR_8g064250 | 58.065 | 62 | 25 | 1 | 778 | 838 | 7 | 68 | 5.20e-15 | 72.0 |
MS.gene015179.t1 | MTR_6g059310 | 33.077 | 130 | 85 | 2 | 680 | 807 | 101 | 230 | 5.27e-14 | 74.7 |
MS.gene015179.t1 | MTR_6g059310 | 33.077 | 130 | 85 | 2 | 680 | 807 | 101 | 230 | 5.30e-14 | 74.7 |
MS.gene015179.t1 | MTR_8g064310 | 53.846 | 52 | 24 | 0 | 777 | 828 | 6 | 57 | 5.92e-13 | 65.1 |
MS.gene015179.t1 | MTR_5g018850 | 28.188 | 149 | 90 | 2 | 677 | 808 | 1338 | 1486 | 3.62e-12 | 70.9 |
MS.gene015179.t1 | MTR_3g088625 | 26.531 | 196 | 105 | 4 | 614 | 807 | 1178 | 1336 | 4.91e-11 | 67.4 |
MS.gene015179.t1 | MTR_3g088625 | 26.531 | 196 | 105 | 4 | 614 | 807 | 1284 | 1442 | 5.43e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015179.t1 | AT2G23380 | 61.984 | 897 | 263 | 12 | 6 | 840 | 22 | 902 | 0.0 | 1021 |
MS.gene015179.t1 | AT2G23380 | 63.717 | 678 | 175 | 10 | 225 | 840 | 7 | 675 | 0.0 | 801 |
MS.gene015179.t1 | AT4G02020 | 47.735 | 861 | 364 | 18 | 20 | 838 | 36 | 852 | 0.0 | 698 |
MS.gene015179.t1 | AT4G02020 | 46.135 | 802 | 348 | 17 | 20 | 779 | 36 | 795 | 0.0 | 617 |
MS.gene015179.t1 | AT4G02020 | 44.716 | 776 | 345 | 17 | 20 | 753 | 36 | 769 | 0.0 | 568 |
MS.gene015179.t1 | AT4G02020 | 44.716 | 776 | 345 | 17 | 20 | 753 | 36 | 769 | 0.0 | 568 |
MS.gene015179.t1 | AT1G02580 | 49.322 | 369 | 166 | 9 | 465 | 826 | 326 | 680 | 2.71e-112 | 358 |
MS.gene015179.t1 | AT1G02580 | 29.682 | 283 | 163 | 11 | 20 | 285 | 17 | 280 | 4.04e-15 | 80.1 |
MS.gene015179.t1 | AT1G02580 | 46.154 | 247 | 115 | 7 | 465 | 706 | 326 | 559 | 5.29e-64 | 226 |
MS.gene015179.t1 | AT1G02580 | 29.682 | 283 | 163 | 11 | 20 | 285 | 17 | 280 | 3.52e-15 | 80.1 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT5G42400 | 34.416 | 154 | 97 | 2 | 675 | 824 | 1233 | 1386 | 5.37e-21 | 99.8 |
MS.gene015179.t1 | AT2G31650 | 41.322 | 121 | 68 | 2 | 690 | 807 | 897 | 1017 | 8.58e-20 | 95.5 |
MS.gene015179.t1 | AT5G53430 | 35.252 | 139 | 83 | 3 | 689 | 820 | 899 | 1037 | 1.02e-19 | 95.5 |
MS.gene015179.t1 | AT4G27910 | 38.095 | 126 | 76 | 2 | 689 | 812 | 883 | 1008 | 1.26e-19 | 95.1 |
MS.gene015179.t1 | AT1G76710 | 37.405 | 131 | 80 | 1 | 680 | 808 | 78 | 208 | 1.21e-18 | 90.5 |
MS.gene015179.t1 | AT1G76710 | 37.405 | 131 | 80 | 1 | 680 | 808 | 78 | 208 | 1.45e-18 | 90.5 |
MS.gene015179.t1 | AT1G76710 | 37.405 | 131 | 80 | 1 | 680 | 808 | 78 | 208 | 1.45e-18 | 90.5 |
MS.gene015179.t1 | AT1G76710 | 37.405 | 131 | 80 | 1 | 680 | 808 | 78 | 208 | 1.53e-18 | 90.5 |
MS.gene015179.t1 | AT3G61740 | 35.766 | 137 | 80 | 4 | 692 | 820 | 840 | 976 | 2.23e-18 | 90.9 |
MS.gene015179.t1 | AT3G61740 | 35.766 | 137 | 80 | 4 | 692 | 820 | 876 | 1012 | 2.80e-18 | 90.9 |
MS.gene015179.t1 | AT4G30860 | 32.317 | 164 | 93 | 5 | 648 | 807 | 295 | 444 | 3.45e-18 | 89.4 |
MS.gene015179.t1 | AT1G05830 | 38.843 | 121 | 71 | 2 | 690 | 807 | 918 | 1038 | 3.84e-17 | 87.0 |
MS.gene015179.t1 | AT1G05830 | 38.843 | 121 | 71 | 2 | 690 | 807 | 918 | 1038 | 3.84e-17 | 87.0 |
MS.gene015179.t1 | AT1G05830 | 38.843 | 121 | 71 | 2 | 690 | 807 | 918 | 1038 | 3.84e-17 | 87.0 |
MS.gene015179.t1 | AT1G05830 | 38.843 | 121 | 71 | 2 | 690 | 807 | 918 | 1038 | 3.84e-17 | 87.0 |
MS.gene015179.t1 | AT3G59960 | 34.454 | 119 | 76 | 2 | 691 | 807 | 111 | 229 | 3.36e-15 | 77.4 |
MS.gene015179.t1 | AT3G59960 | 34.454 | 119 | 76 | 2 | 691 | 807 | 111 | 229 | 3.36e-15 | 77.4 |
MS.gene015179.t1 | AT3G59960 | 34.454 | 119 | 76 | 2 | 691 | 807 | 111 | 229 | 3.36e-15 | 77.4 |
MS.gene015179.t1 | AT3G59960 | 34.454 | 119 | 76 | 2 | 691 | 807 | 111 | 229 | 5.28e-15 | 77.8 |
MS.gene015179.t1 | AT1G77300 | 33.077 | 130 | 85 | 1 | 680 | 807 | 1015 | 1144 | 9.30e-13 | 73.2 |
MS.gene015179.t1 | AT1G77300 | 33.077 | 130 | 85 | 1 | 680 | 807 | 1015 | 1144 | 1.07e-12 | 72.8 |
MS.gene015179.t1 | AT2G44150 | 32.787 | 122 | 80 | 2 | 688 | 807 | 113 | 234 | 2.35e-12 | 70.1 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGAAAAGAATCATCAATT+TGG | 0.149068 | 5.1:-9250149 | None:intergenic |
TCTTGGAAAACTCTTGAAAA+AGG | 0.182538 | 5.1:+9251220 | MS.gene015179:CDS |
CTTAAAATGGCAGGTTATTA+TGG | 0.213950 | 5.1:+9257784 | MS.gene015179:intron |
AGCATGACTATCAGAGAATT+TGG | 0.217139 | 5.1:+9249821 | MS.gene015179:intron |
AATACCTTCGCGTAACAATT+TGG | 0.232791 | 5.1:-9257683 | None:intergenic |
TTTACTTCAGGTAATTTAAT+AGG | 0.247061 | 5.1:-9246615 | None:intergenic |
CTCACCGTTCGGAAACAATT+TGG | 0.267793 | 5.1:-9250487 | None:intergenic |
CACGACATCGGCGACAAAAT+AGG | 0.286588 | 5.1:-9250209 | None:intergenic |
GAGTGTCCTTGTCTTCTAAA+TGG | 0.291259 | 5.1:+9254681 | MS.gene015179:CDS |
ATATGCCTTCAGGTTCTTCT+TGG | 0.300169 | 5.1:+9257239 | MS.gene015179:intron |
CGAATTTATTATGATCAAAA+TGG | 0.303568 | 5.1:+9248926 | MS.gene015179:CDS |
TTAAGAGATTCCTGGCTATT+AGG | 0.306752 | 5.1:-9254271 | None:intergenic |
GGTTCTACGGCAGTACTTCT+AGG | 0.311438 | 5.1:+9246561 | MS.gene015179:CDS |
CAGAAAAGAATCATCAATTT+GGG | 0.315554 | 5.1:-9250148 | None:intergenic |
CTCTCAGGATCTTGTCTTCC+CGG | 0.320449 | 5.1:+9250343 | MS.gene015179:CDS |
CCTGGACGGGATGCTGCTTC+AGG | 0.332402 | 5.1:+9250772 | MS.gene015179:CDS |
AAGCATTTCAAAACAAGAAT+TGG | 0.346654 | 5.1:+9251186 | MS.gene015179:CDS |
GACGGTCTGATGTGTCTGGC+TGG | 0.348610 | 5.1:+9257261 | MS.gene015179:CDS |
TTGCTATAACTAACCAGATA+TGG | 0.351637 | 5.1:+9246385 | MS.gene015179:CDS |
TGGCAGGTTATTATGGTTGA+TGG | 0.362435 | 5.1:+9257791 | MS.gene015179:intron |
AGCTGTGGCGATGGCACTCT+TGG | 0.363331 | 5.1:+9255905 | MS.gene015179:intron |
CCGCCGACGATTTCCATATC+TGG | 0.367263 | 5.1:-9246398 | None:intergenic |
TGGCTGGGGAGCCTTCTTAA+AGG | 0.368220 | 5.1:+9257277 | MS.gene015179:CDS |
ATGATAGGCAGCAGATTTCC+AGG | 0.368503 | 5.1:-9254574 | None:intergenic |
ATAGCCAGGAATCTCTTAAA+TGG | 0.370443 | 5.1:+9254275 | MS.gene015179:CDS |
TGGTTTATCTGATGTTGTTT+TGG | 0.372618 | 5.1:+9249841 | MS.gene015179:CDS |
GGGAAGTTGTCTGGTTCTAC+TGG | 0.374845 | 5.1:+9254344 | MS.gene015179:CDS |
TTCCTCGCTTATCTGCTTCC+CGG | 0.375191 | 5.1:-9257460 | None:intergenic |
CTTCTTCACAATTTATGTAC+TGG | 0.376007 | 5.1:-9254322 | None:intergenic |
CCTCTGGCGGTGCTCTATCT+AGG | 0.376930 | 5.1:+9250650 | MS.gene015179:CDS |
TCTCTTTAATCTGAATGATC+AGG | 0.377333 | 5.1:+9257511 | MS.gene015179:CDS |
ACAGAGGATCAATCAGTATT+AGG | 0.386098 | 5.1:+9248896 | MS.gene015179:CDS |
GGGGAGAGCAATGGTTATAA+TGG | 0.386785 | 5.1:+9246528 | MS.gene015179:CDS |
TGACCGCTCACTGAATGATA+TGG | 0.390718 | 5.1:+9251102 | MS.gene015179:CDS |
TTCTTTGCACGACCACTTGA+AGG | 0.396983 | 5.1:-9257956 | None:intergenic |
TAGACCATTTAAGAGATTCC+TGG | 0.401226 | 5.1:-9254279 | None:intergenic |
GAAACGAATTGTTACGGTTA+AGG | 0.404174 | 5.1:+9246218 | MS.gene015179:CDS |
CATGGTACATCTTCAGTGTT+AGG | 0.412969 | 5.1:-9250460 | None:intergenic |
CCAGTGGGGAAAAGTGGAAT+TGG | 0.416857 | 5.1:+9250823 | MS.gene015179:CDS |
TTATGGTTGATGGAGATCAT+AGG | 0.420973 | 5.1:+9257801 | MS.gene015179:CDS |
AGCCCGATAGAGCTCCTGCT+TGG | 0.425317 | 5.1:+9257888 | MS.gene015179:CDS |
AGCCCAAGCAGGAGCTCTAT+CGG | 0.428962 | 5.1:-9257891 | None:intergenic |
GCTCTCCCCATCATCATTAC+CGG | 0.429977 | 5.1:-9246514 | None:intergenic |
GAAGCAATTGACATGCATAA+TGG | 0.434157 | 5.1:+9246483 | MS.gene015179:CDS |
CTGCTGCCTATCATTCAATC+AGG | 0.434225 | 5.1:+9254583 | MS.gene015179:CDS |
AATTGGCTGATAATAAATCT+TGG | 0.434669 | 5.1:+9251203 | MS.gene015179:CDS |
ACTCCTTTCCACAAGCTGAT+TGG | 0.436728 | 5.1:-9254662 | None:intergenic |
TTTGGTAAATACCTTTAAGA+AGG | 0.436866 | 5.1:-9257288 | None:intergenic |
TTCTAGTTTGCATGCAGAAA+CGG | 0.439068 | 5.1:+9250878 | MS.gene015179:CDS |
TGTGAAGAAGGGAAGTTGTC+TGG | 0.440207 | 5.1:+9254335 | MS.gene015179:CDS |
GCCCGATAGAGCTCCTGCTT+GGG | 0.440520 | 5.1:+9257889 | MS.gene015179:CDS |
TTCTAGAAAAGCACTGAGCC+AGG | 0.444807 | 5.1:-9249868 | None:intergenic |
GATTGCCTCCTTACACTACA+TGG | 0.447081 | 5.1:+9246640 | MS.gene015179:CDS |
TTCGCGTAACAATTTGGAAC+AGG | 0.451100 | 5.1:-9257677 | None:intergenic |
GAAAAGGATTACAGAGAGAA+AGG | 0.452779 | 5.1:+9254605 | MS.gene015179:CDS |
TGCCGACTTATAGGTACTTA+AGG | 0.453927 | 5.1:+9250576 | MS.gene015179:intron |
ACGGTCTGATGTGTCTGGCT+GGG | 0.459402 | 5.1:+9257262 | MS.gene015179:CDS |
GCTGTGGCGATGGCACTCTT+GGG | 0.460661 | 5.1:+9255906 | MS.gene015179:intron |
CAGATGTTTGTAGGAACTGT+TGG | 0.461588 | 5.1:+9255018 | MS.gene015179:CDS |
CGGAGAGTTGATTTCTCACC+GGG | 0.462898 | 5.1:+9257442 | MS.gene015179:CDS |
CAACAGTTCCTACAAACATC+TGG | 0.464408 | 5.1:-9255017 | None:intergenic |
CGGTCTGATGTGTCTGGCTG+GGG | 0.465379 | 5.1:+9257263 | MS.gene015179:CDS |
ACATGGATTGTACTGTCGGC+AGG | 0.466976 | 5.1:-9254634 | None:intergenic |
GCCCAAGCAGGAGCTCTATC+GGG | 0.467735 | 5.1:-9257890 | None:intergenic |
CTTGGACGGTCTGATGTGTC+TGG | 0.470501 | 5.1:+9257257 | MS.gene015179:CDS |
CAGATTACATGGATGCTCTC+AGG | 0.470637 | 5.1:+9250328 | MS.gene015179:CDS |
AATGTGATCCAGATGTTTGT+AGG | 0.470951 | 5.1:+9255009 | MS.gene015179:CDS |
GTCTGGATTTGCTGAGTAAG+AGG | 0.471656 | 5.1:+9246454 | MS.gene015179:CDS |
CCTATCATTCAATCAGGAAA+AGG | 0.472188 | 5.1:+9254589 | MS.gene015179:CDS |
ATTGCAGCTGCCTAATAGCC+AGG | 0.472413 | 5.1:+9254261 | MS.gene015179:intron |
GCCTTCAGGTTCTTCTTGGA+CGG | 0.474437 | 5.1:+9257243 | MS.gene015179:intron |
CAGTACATAAATTGTGAAGA+AGG | 0.479210 | 5.1:+9254323 | MS.gene015179:CDS |
TAAATGGTCTAAAGACATGT+TGG | 0.479310 | 5.1:+9254291 | MS.gene015179:CDS |
AGTGACTCGGAGAATGGTCC+TGG | 0.482458 | 5.1:+9250754 | MS.gene015179:CDS |
GTTCTTGATGCTTATCGAAA+GGG | 0.482842 | 5.1:+9257626 | MS.gene015179:CDS |
ACTAAACCAGTGGGGAAAAG+TGG | 0.485809 | 5.1:+9250817 | MS.gene015179:CDS |
CACGAGGAAAGAAGAATTTG+TGG | 0.489043 | 5.1:+9251159 | MS.gene015179:CDS |
GTCCATGCTTTGCTGCAGAT+AGG | 0.489705 | 5.1:+9254985 | MS.gene015179:CDS |
GTAATAATGAAGTGAGAAGA+AGG | 0.492938 | 5.1:+9254505 | MS.gene015179:CDS |
TCCATGCTTTGCTGCAGATA+GGG | 0.497600 | 5.1:+9254986 | MS.gene015179:CDS |
TAATTATCCCCTCTTTGACT+AGG | 0.498579 | 5.1:-9255932 | None:intergenic |
AGGCTGAGAGGCAACCTTTG+TGG | 0.498683 | 5.1:+9250431 | MS.gene015179:intron |
AAATGGTCTAAAGACATGTT+GGG | 0.502582 | 5.1:+9254292 | MS.gene015179:CDS |
TTTGTAGGAACTGTTGGGTC+AGG | 0.504264 | 5.1:+9255024 | MS.gene015179:CDS |
GTTCGTGCCGGTAATGATGA+TGG | 0.504381 | 5.1:+9246507 | MS.gene015179:CDS |
TATGGTTGATGGAGATCATA+GGG | 0.508403 | 5.1:+9257802 | MS.gene015179:CDS |
CGGAAACAATTTGGCCCACA+TGG | 0.509205 | 5.1:-9250478 | None:intergenic |
TGCAGTTAAAGACGTGTTAG+CGG | 0.509423 | 5.1:+9246164 | MS.gene015179:CDS |
TCTTCTCAAACAGCAGCAAA+AGG | 0.513002 | 5.1:+9255976 | MS.gene015179:CDS |
TTCGTGCCGGTAATGATGAT+GGG | 0.514702 | 5.1:+9246508 | MS.gene015179:CDS |
TGCCGATACAGATAGAGGTC+TGG | 0.518433 | 5.1:+9246437 | MS.gene015179:CDS |
TAGATGAAGCACTTTCACTT+TGG | 0.519134 | 5.1:-9250708 | None:intergenic |
AGATGTTTGTAGGAACTGTT+GGG | 0.521591 | 5.1:+9255019 | MS.gene015179:CDS |
GCTAAGGAACGGATTAATGC+TGG | 0.522196 | 5.1:+9257836 | MS.gene015179:CDS |
GGAAGTTGTCTGGTTCTACT+GGG | 0.522601 | 5.1:+9254345 | MS.gene015179:CDS |
TCTGGCTTTCGAGCCCAAGC+AGG | 0.523287 | 5.1:-9257902 | None:intergenic |
CCTGAAGCAGCATCCCGTCC+AGG | 0.528406 | 5.1:-9250772 | None:intergenic |
CTCGGAGAATGGTCCTGGAC+GGG | 0.531208 | 5.1:+9250759 | MS.gene015179:CDS |
TGGAGATGACCATGGTTCTA+CGG | 0.533083 | 5.1:+9246548 | MS.gene015179:CDS |
GCTCGAAAGCCAGATGCCCC+TGG | 0.535983 | 5.1:+9257911 | MS.gene015179:CDS |
TGTTCTTGATGCTTATCGAA+AGG | 0.537694 | 5.1:+9257625 | MS.gene015179:CDS |
TGCTGCGAAACGAATTGTTA+CGG | 0.538271 | 5.1:+9246212 | MS.gene015179:CDS |
GATGTTGAAGACAAATCCTC+TGG | 0.541597 | 5.1:+9250634 | MS.gene015179:CDS |
GAGAGTAGTGACTCGGAGAA+TGG | 0.542871 | 5.1:+9250748 | MS.gene015179:CDS |
ATATCATTCAGTGAGCGGTC+AGG | 0.544326 | 5.1:-9251100 | None:intergenic |
ATCCAGACCTCTATCTGTAT+CGG | 0.545353 | 5.1:-9246439 | None:intergenic |
TCCCTATCTGCAGCAAAGCA+TGG | 0.547017 | 5.1:-9254987 | None:intergenic |
ATCCACATGGATTGTACTGT+CGG | 0.548401 | 5.1:-9254638 | None:intergenic |
AACAATTTGGAACAGGAGAG+TGG | 0.550411 | 5.1:-9257670 | None:intergenic |
AGTCTGAGTAGATGTGACTT+TGG | 0.553936 | 5.1:-9250611 | None:intergenic |
TACAATGCAGACAAAGAAAG+TGG | 0.557922 | 5.1:+9246128 | None:intergenic |
ATGCTGTAAAGAATGCTGTT+CGG | 0.558439 | 5.1:+9246592 | MS.gene015179:CDS |
CCGGAGAGTTGATTTCTCAC+CGG | 0.558582 | 5.1:+9257441 | MS.gene015179:CDS |
TTGGGATTCCTAGTCAAAGA+GGG | 0.559307 | 5.1:+9255924 | MS.gene015179:CDS |
CCGGTGAGAAATCAACTCTC+CGG | 0.562064 | 5.1:-9257441 | None:intergenic |
TATTGTAGCAGCTGTGGCGA+TGG | 0.563391 | 5.1:+9255896 | MS.gene015179:intron |
AAAGTGCTTCATCTAATGCT+AGG | 0.564163 | 5.1:+9250716 | MS.gene015179:CDS |
CCCACAGTACTTCTCACAGC+AGG | 0.565727 | 5.1:-9254706 | None:intergenic |
AGTACATAAATTGTGAAGAA+GGG | 0.566712 | 5.1:+9254324 | MS.gene015179:CDS |
TAGGAATATTTGCTAAGGAA+CGG | 0.567191 | 5.1:+9257825 | MS.gene015179:CDS |
GAATACCTTGGAGAGTATAC+CGG | 0.569151 | 5.1:+9257422 | MS.gene015179:CDS |
CAGGTTCCATTTAGAAGACA+AGG | 0.572098 | 5.1:-9254687 | None:intergenic |
TCCGTCGTTTAAAGTATACC+TGG | 0.574401 | 5.1:+9254556 | MS.gene015179:CDS |
GCTAACACGTCTTTAACTGC+AGG | 0.577529 | 5.1:-9246162 | None:intergenic |
TCTTCCCCACTCGTAACATG+TGG | 0.577728 | 5.1:-9251133 | None:intergenic |
CATATCTGAGAGTAGTGACT+CGG | 0.582166 | 5.1:+9250741 | MS.gene015179:CDS |
GGAACTAATTGACGAAGAAG+AGG | 0.585064 | 5.1:+9248982 | MS.gene015179:CDS |
CATGGATTGTACTGTCGGCA+GGG | 0.586600 | 5.1:-9254633 | None:intergenic |
TCCAGGTATACTTTAAACGA+CGG | 0.589735 | 5.1:-9254557 | None:intergenic |
CAAGCTGATTGGCATCCACA+TGG | 0.591796 | 5.1:-9254651 | None:intergenic |
ATTTATTATGATCAAAATGG+TGG | 0.591896 | 5.1:+9248929 | MS.gene015179:CDS |
GCTACAAATTCTCTCGTGGA+AGG | 0.592737 | 5.1:+9254371 | MS.gene015179:CDS |
CCACCTAAAACTAAACCAGT+GGG | 0.597750 | 5.1:+9250808 | MS.gene015179:CDS |
TGTTCCAAATTGTTACGCGA+AGG | 0.599246 | 5.1:+9257679 | MS.gene015179:CDS |
ACTCTCCGGTATACTCTCCA+AGG | 0.599359 | 5.1:-9257427 | None:intergenic |
TCTGGAAAAGGATCTTGAAG+CGG | 0.601715 | 5.1:+9250167 | MS.gene015179:CDS |
CTGACCCACATGTTACGAGT+GGG | 0.602989 | 5.1:+9251128 | MS.gene015179:CDS |
TAGGGTAGGAATATTTGCTA+AGG | 0.603131 | 5.1:+9257820 | MS.gene015179:CDS |
GTTTGTAAACATGAATACCT+TGG | 0.604817 | 5.1:+9257410 | MS.gene015179:CDS |
AGCATGGACATTGACGACTT+CGG | 0.607089 | 5.1:-9254971 | None:intergenic |
ATGCATAATGGTGTTCGTGC+CGG | 0.607974 | 5.1:+9246495 | MS.gene015179:CDS |
CCTAGATAGAGCACCGCCAG+AGG | 0.611003 | 5.1:-9250650 | None:intergenic |
TCGTCGGCGGAGAGGACGTG+TGG | 0.611446 | 5.1:+9246411 | MS.gene015179:CDS |
ACTCGGAGAATGGTCCTGGA+CGG | 0.611892 | 5.1:+9250758 | MS.gene015179:CDS |
GGATGCTACAAATTCTCTCG+TGG | 0.612099 | 5.1:+9254367 | MS.gene015179:CDS |
GTTGATGGAGATCATAGGGT+AGG | 0.614383 | 5.1:+9257806 | MS.gene015179:CDS |
CTTGGGATTCCTAGTCAAAG+AGG | 0.614392 | 5.1:+9255923 | MS.gene015179:CDS |
TATGGAAATCGTCGGCGGAG+AGG | 0.615136 | 5.1:+9246403 | MS.gene015179:CDS |
AATGATGATGGGGAGAGCAA+TGG | 0.615333 | 5.1:+9246519 | MS.gene015179:CDS |
GGCATTGCCGATACAGATAG+AGG | 0.618454 | 5.1:+9246432 | MS.gene015179:CDS |
GAGCTCTATCGGGCTCGTAA+CGG | 0.619502 | 5.1:-9257880 | None:intergenic |
AGGATCAATCAGTATTAGGT+CGG | 0.619655 | 5.1:+9248900 | MS.gene015179:CDS |
TGTGGATGCCAATCAGCTTG+TGG | 0.621426 | 5.1:+9254654 | MS.gene015179:CDS |
TCTCGTGGAAGGCTATTCCA+AGG | 0.624684 | 5.1:+9254382 | MS.gene015179:CDS |
GGAACGGATTAATGCTGGCG+AGG | 0.624928 | 5.1:+9257841 | MS.gene015179:CDS |
ATCAATCAGTATTAGGTCGG+AGG | 0.625781 | 5.1:+9248903 | MS.gene015179:CDS |
GAAGACGGTGCTCCTTCAAG+TGG | 0.626003 | 5.1:+9257944 | MS.gene015179:CDS |
CAATGAAGACAATAGTGGCG+AGG | 0.626663 | 5.1:+9250095 | MS.gene015179:CDS |
ATGCCAATCAGCTTGTGGAA+AGG | 0.628895 | 5.1:+9254659 | MS.gene015179:CDS |
TTTGGAATAACAGAATAGAG+TGG | 0.636263 | 5.1:+9246341 | MS.gene015179:intron |
TGGGCCAAATTGTTTCCGAA+CGG | 0.639399 | 5.1:+9250483 | MS.gene015179:CDS |
AAAATCCATGTAGTGTAAGG+AGG | 0.639629 | 5.1:-9246645 | None:intergenic |
GAAAGAATCTTACACGACAT+CGG | 0.641819 | 5.1:-9250221 | None:intergenic |
TCTGACCCACATGTTACGAG+TGG | 0.642977 | 5.1:+9251127 | MS.gene015179:CDS |
CCCACCTAAAACTAAACCAG+TGG | 0.643501 | 5.1:+9250807 | MS.gene015179:CDS |
CAGAAATCAAAGAATGACAG+AGG | 0.651131 | 5.1:+9248880 | MS.gene015179:intron |
GTGTTAGGAGGAGTCCACAA+AGG | 0.652487 | 5.1:-9250445 | None:intergenic |
TATTTGCAGCGACAGTGAGG+AGG | 0.654413 | 5.1:+9248961 | MS.gene015179:CDS |
CTTCCCCACTCGTAACATGT+GGG | 0.655437 | 5.1:-9251132 | None:intergenic |
GGAATAACAGAATAGAGTGG+AGG | 0.658661 | 5.1:+9246344 | MS.gene015179:intron |
AAACCATATCATTCAGTGAG+CGG | 0.659543 | 5.1:-9251105 | None:intergenic |
GAAGTACTGCCGTAGAACCA+TGG | 0.660327 | 5.1:-9246557 | None:intergenic |
GGTACATCTTCAGTGTTAGG+AGG | 0.660539 | 5.1:-9250457 | None:intergenic |
TAACCAGATATGGAAATCGT+CGG | 0.662231 | 5.1:+9246395 | MS.gene015179:CDS |
TAAGAGAAACAGTAAGCGAG+TGG | 0.662571 | 5.1:+9250846 | MS.gene015179:CDS |
TGACCCACATGTTACGAGTG+GGG | 0.665377 | 5.1:+9251129 | MS.gene015179:CDS |
ACCTGCTGTGAGAAGTACTG+TGG | 0.669440 | 5.1:+9254705 | MS.gene015179:CDS |
CCTGCTGTGAGAAGTACTGT+GGG | 0.671307 | 5.1:+9254706 | MS.gene015179:CDS |
GGTTATAATGGAGATGACCA+TGG | 0.672080 | 5.1:+9246540 | MS.gene015179:CDS |
AATGCAGACAAAGAAAGTGG+AGG | 0.674743 | 5.1:+9246131 | None:intergenic |
CGAGTGGGGAAGACAACACG+AGG | 0.677101 | 5.1:+9251143 | MS.gene015179:CDS |
ACTTATTTGCAGCGACAGTG+AGG | 0.677851 | 5.1:+9248958 | MS.gene015179:CDS |
AACACTGAAGATGTACCATG+TGG | 0.679817 | 5.1:+9250463 | MS.gene015179:CDS |
TGGGATTCCTAGTCAAAGAG+GGG | 0.679854 | 5.1:+9255925 | MS.gene015179:CDS |
TGCCGACAGTACAATCCATG+TGG | 0.680454 | 5.1:+9254636 | MS.gene015179:CDS |
TCGTGCCGGTAATGATGATG+GGG | 0.694352 | 5.1:+9246509 | MS.gene015179:CDS |
TGGTTCATGAATAGGCTGAG+AGG | 0.694664 | 5.1:+9250419 | MS.gene015179:intron |
CACCGGGAAGCAGATAAGCG+AGG | 0.695786 | 5.1:+9257458 | MS.gene015179:CDS |
CCAGATATGGAAATCGTCGG+CGG | 0.697154 | 5.1:+9246398 | MS.gene015179:CDS |
GAAGTTGTCTGGTTCTACTG+GGG | 0.701883 | 5.1:+9254346 | MS.gene015179:CDS |
ACACTGAAGATGTACCATGT+GGG | 0.703901 | 5.1:+9250464 | MS.gene015179:CDS |
GTTGAAGACAAATCCTCTGG+CGG | 0.737906 | 5.1:+9250637 | MS.gene015179:CDS |
CACCTAAAACTAAACCAGTG+GGG | 0.751699 | 5.1:+9250809 | MS.gene015179:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 9246132 | 9257988 | 9246132 | ID=MS.gene015179 |
chr5.1 | mRNA | 9246132 | 9257988 | 9246132 | ID=MS.gene015179.t1;Parent=MS.gene015179 |
chr5.1 | exon | 9246132 | 9246239 | 9246132 | ID=MS.gene015179.t1.exon1;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9246132 | 9246239 | 9246132 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9246354 | 9246676 | 9246354 | ID=MS.gene015179.t1.exon2;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9246354 | 9246676 | 9246354 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9248883 | 9249044 | 9248883 | ID=MS.gene015179.t1.exon3;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9248883 | 9249044 | 9248883 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9249823 | 9249907 | 9249823 | ID=MS.gene015179.t1.exon4;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9249823 | 9249907 | 9249823 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9250075 | 9250230 | 9250075 | ID=MS.gene015179.t1.exon5;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9250075 | 9250230 | 9250075 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9250317 | 9250364 | 9250317 | ID=MS.gene015179.t1.exon6;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9250317 | 9250364 | 9250317 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9250433 | 9250504 | 9250433 | ID=MS.gene015179.t1.exon7;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9250433 | 9250504 | 9250433 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9250589 | 9250936 | 9250589 | ID=MS.gene015179.t1.exon8;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9250589 | 9250936 | 9250589 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9251091 | 9251281 | 9251091 | ID=MS.gene015179.t1.exon9;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9251091 | 9251281 | 9251091 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9254268 | 9254403 | 9254268 | ID=MS.gene015179.t1.exon10;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9254268 | 9254403 | 9254268 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9254504 | 9254727 | 9254504 | ID=MS.gene015179.t1.exon11;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9254504 | 9254727 | 9254504 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9254914 | 9255045 | 9254914 | ID=MS.gene015179.t1.exon12;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9254914 | 9255045 | 9254914 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9255907 | 9255997 | 9255907 | ID=MS.gene015179.t1.exon13;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9255907 | 9255997 | 9255907 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9257251 | 9257298 | 9257251 | ID=MS.gene015179.t1.exon14;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9257251 | 9257298 | 9257251 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9257404 | 9257532 | 9257404 | ID=MS.gene015179.t1.exon15;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9257404 | 9257532 | 9257404 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9257623 | 9257700 | 9257623 | ID=MS.gene015179.t1.exon16;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9257623 | 9257700 | 9257623 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
chr5.1 | exon | 9257797 | 9257988 | 9257797 | ID=MS.gene015179.t1.exon17;Parent=MS.gene015179.t1 |
chr5.1 | CDS | 9257797 | 9257988 | 9257797 | ID=cds.MS.gene015179.t1;Parent=MS.gene015179.t1 |
Gene Sequence |
Protein sequence |