Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04079.t1 | XP_013460113.1 | 99.6 | 266 | 1 | 0 | 1 | 266 | 1 | 266 | 4.60E-142 | 513.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04079.t1 | O82134 | 96.2 | 265 | 10 | 0 | 1 | 265 | 1 | 265 | 8.3e-140 | 497.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04079.t1 | A0A072UWC3 | 99.6 | 266 | 1 | 0 | 1 | 266 | 1 | 266 | 3.3e-142 | 513.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04079.t1 | MTR_3g462130 | 99.624 | 266 | 1 | 0 | 1 | 266 | 1 | 266 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04079.t1 | AT2G29570 | 89.057 | 265 | 28 | 1 | 1 | 265 | 1 | 264 | 5.97e-179 | 493 |
| MS.gene04079.t1 | AT1G07370 | 90.152 | 264 | 25 | 1 | 1 | 264 | 1 | 263 | 1.59e-178 | 491 |
Find 62 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTTCTCAAGAAGGTTT+TGG | 0.265918 | 3.1:-46550939 | MS.gene04079:CDS |
| CTGTGACCGGAATCTTTCTA+TGG | 0.269865 | 3.1:-46550783 | MS.gene04079:CDS |
| TGATGATATCATTACTATTA+AGG | 0.286022 | 3.1:-46550714 | MS.gene04079:CDS |
| TAGTGAGCACCTTGGAATTC+CGG | 0.342488 | 3.1:-46549521 | MS.gene04079:CDS |
| TTGCTGAGATGGGTTATGTT+AGG | 0.359199 | 3.1:-46548898 | MS.gene04079:CDS |
| GGGTTATGTTAGGTTCTATC+TGG | 0.362548 | 3.1:-46548888 | MS.gene04079:CDS |
| CATCTATATCCAACTAAACT+TGG | 0.367153 | 3.1:+46548828 | None:intergenic |
| TGTATCTTAATGCAAATTGC+AGG | 0.376288 | 3.1:+46549008 | None:intergenic |
| TTAGAACTCCGTCTAGTTCA+AGG | 0.383436 | 3.1:-46550962 | MS.gene04079:CDS |
| GGGTATGAATCTGAACAATA+TGG | 0.386205 | 3.1:-46550762 | MS.gene04079:CDS |
| AAAATCAGAAATCTTGTCTT+GGG | 0.388430 | 3.1:+46549567 | None:intergenic |
| GAGCTGCAAACATAGTTTGC+AGG | 0.393234 | 3.1:-46549260 | MS.gene04079:CDS |
| CAAAATCAGAAATCTTGTCT+TGG | 0.404879 | 3.1:+46549566 | None:intergenic |
| GCGCTTCTGCTTCGTTCTGA+AGG | 0.415834 | 3.1:-46550821 | MS.gene04079:CDS |
| GGCTAGAATCCATGGCTTGA+AGG | 0.422356 | 3.1:+46550858 | None:intergenic |
| TCATACCCATAGAAAGATTC+CGG | 0.424128 | 3.1:+46550777 | None:intergenic |
| ATCCAACTAAACTTGGGGCT+TGG | 0.430031 | 3.1:+46548835 | None:intergenic |
| AATTTCGATTGTTCCTCTAC+TGG | 0.431335 | 3.1:-46550887 | MS.gene04079:CDS |
| CGCTTCTGCTTCGTTCTGAA+GGG | 0.435644 | 3.1:-46550820 | MS.gene04079:CDS |
| ATCTTGTACTCAACAACAAC+TGG | 0.435854 | 3.1:+46548920 | None:intergenic |
| TGGTTTCTCCCTTCAAGCCA+TGG | 0.440163 | 3.1:-46550867 | MS.gene04079:CDS |
| CTGAATATGATGCCATTGTT+AGG | 0.450696 | 3.1:-46549495 | MS.gene04079:CDS |
| TGTAAAGATCTTAGTAGCAT+TGG | 0.452246 | 3.1:-46549445 | MS.gene04079:CDS |
| TGCAGCTCCAATGTCACCCT+TGG | 0.455509 | 3.1:+46549275 | None:intergenic |
| ATTACTATTAAGGCTGATGA+TGG | 0.460832 | 3.1:-46550704 | MS.gene04079:CDS |
| ATCTATATCCAACTAAACTT+GGG | 0.465021 | 3.1:+46548829 | None:intergenic |
| TCAAGGTTCACTTCTCAAGA+AGG | 0.468437 | 3.1:-46550945 | MS.gene04079:CDS |
| AGTTGTCATCTCGGTTACTA+AGG | 0.478522 | 3.1:-46549316 | MS.gene04079:CDS |
| TTGTGTTGCAGTTGTCATCT+CGG | 0.495202 | 3.1:-46549325 | MS.gene04079:intron |
| TTGAGCATTATCGCTGTGAC+CGG | 0.503477 | 3.1:-46550796 | MS.gene04079:CDS |
| TCTATGACAGTAGCATCATC+AGG | 0.509310 | 3.1:+46549049 | None:intergenic |
| TGCCATCTGCTGAGTTTGCT+AGG | 0.512820 | 3.1:-46549471 | MS.gene04079:CDS |
| AGCCACATGGCTAGAATCCA+TGG | 0.524151 | 3.1:+46550850 | None:intergenic |
| GCTAGAATCCATGGCTTGAA+GGG | 0.531266 | 3.1:+46550859 | None:intergenic |
| ATGGCATCATATTCAGCCTC+CGG | 0.535879 | 3.1:+46549502 | None:intergenic |
| TGAGTACAAGATTGCTGAGA+TGG | 0.541644 | 3.1:-46548909 | MS.gene04079:CDS |
| CTTAGTAGCATTGGTGACAC+TGG | 0.547229 | 3.1:-46549436 | MS.gene04079:intron |
| AATGCAAATTGCAGGGACAC+AGG | 0.574686 | 3.1:+46549016 | None:intergenic |
| TGTCATCTCGGTTACTAAGG+AGG | 0.575341 | 3.1:-46549313 | MS.gene04079:CDS |
| GTCATCTCGGTTACTAAGGA+GGG | 0.577137 | 3.1:-46549312 | MS.gene04079:CDS |
| TGTGACCGGAATCTTTCTAT+GGG | 0.581805 | 3.1:-46550782 | MS.gene04079:CDS |
| GCGAAGATGTTGAAGTGTGC+TGG | 0.584665 | 3.1:-46550740 | MS.gene04079:CDS |
| CAGACTGATAGTAACTGTGC+TGG | 0.590689 | 3.1:+46548955 | None:intergenic |
| ATCCTAGCAAACTCAGCAGA+TGG | 0.593618 | 3.1:+46549469 | None:intergenic |
| ATAGTAACTGTGCTGGACAA+AGG | 0.595033 | 3.1:+46548962 | None:intergenic |
| GCTGGACAAAGGAGTTGCCT+TGG | 0.607604 | 3.1:+46548973 | None:intergenic |
| TTACTATTAAGGCTGATGAT+GGG | 0.610804 | 3.1:-46550703 | MS.gene04079:CDS |
| GTATCTTAATGCAAATTGCA+GGG | 0.611980 | 3.1:+46549009 | None:intergenic |
| GAAGCGCGACAAGAGCCACA+TGG | 0.615310 | 3.1:+46550837 | None:intergenic |
| ATTCAGCCTCCGGAATTCCA+AGG | 0.619118 | 3.1:+46549512 | None:intergenic |
| TCTATATCCAACTAAACTTG+GGG | 0.620329 | 3.1:+46548830 | None:intergenic |
| GAGTACAAGATTGCTGAGAT+GGG | 0.631104 | 3.1:-46548908 | MS.gene04079:CDS |
| GCAGAACACTACTGTGGACA+AGG | 0.634025 | 3.1:-46549238 | MS.gene04079:intron |
| AACTAGACGGAGTTCTAACA+TGG | 0.638008 | 3.1:+46550967 | None:intergenic |
| AGCAGATGGCATCCTAACAA+TGG | 0.641376 | 3.1:+46549483 | None:intergenic |
| ACTAGGGCTTTCGAACATGA+AGG | 0.649583 | 3.1:+46550667 | None:intergenic |
| GACATCGATAGTGAGCACCT+TGG | 0.657990 | 3.1:-46549529 | MS.gene04079:CDS |
| AGCCATGGATTCTAGCCATG+TGG | 0.681036 | 3.1:-46550852 | MS.gene04079:CDS |
| TGAGCACCTTGGAATTCCGG+AGG | 0.683837 | 3.1:-46549518 | MS.gene04079:CDS |
| GAAGTGAACCTTGAACTAGA+CGG | 0.688677 | 3.1:+46550954 | None:intergenic |
| TTGAAGGGAGAAACCAGTAG+AGG | 0.689800 | 3.1:+46550874 | None:intergenic |
| TTGCAGGCAGAACACTACTG+TGG | 0.709888 | 3.1:-46549244 | MS.gene04079:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTAATATTTGTAATT+CGG | - | chr3.1:46550456-46550475 | MS.gene04079:intron | 10.0% |
| !!! | TTTATTTTTAGTGTTAATTA+GGG | - | chr3.1:46549192-46549211 | MS.gene04079:intron | 10.0% |
| !!! | TTTTATTTTTAGTGTTAATT+AGG | - | chr3.1:46549191-46549210 | MS.gene04079:intron | 10.0% |
| !! | GATGTATTTGATAAATTTAA+GGG | - | chr3.1:46550046-46550065 | MS.gene04079:intron | 15.0% |
| !! | TGATGTATTTGATAAATTTA+AGG | - | chr3.1:46550045-46550064 | MS.gene04079:intron | 15.0% |
| !!! | AGATTTTAATTTGAAATGTT+AGG | - | chr3.1:46549310-46549329 | MS.gene04079:CDS | 15.0% |
| !!! | GATTTTAATTTGAAATGTTA+GGG | - | chr3.1:46549311-46549330 | MS.gene04079:CDS | 15.0% |
| !!! | TTTTAATTGACATTTTTACA+TGG | - | chr3.1:46550709-46550728 | MS.gene04079:CDS | 15.0% |
| !! | GATATATTTGATCAATTTCA+GGG | - | chr3.1:46549738-46549757 | MS.gene04079:intron | 20.0% |
| !! | TGATATATTTGATCAATTTC+AGG | - | chr3.1:46549737-46549756 | MS.gene04079:intron | 20.0% |
| !! | TGATGATATCATTACTATTA+AGG | - | chr3.1:46549092-46549111 | MS.gene04079:intron | 20.0% |
| !! | TGTCTATTTGATAAATTTCA+GGG | - | chr3.1:46549899-46549918 | MS.gene04079:intron | 20.0% |
| !! | TGTTAAATTCTGTATGATTT+GGG | - | chr3.1:46549928-46549947 | MS.gene04079:intron | 20.0% |
| !! | TTGTCTATTTGATAAATTTC+AGG | - | chr3.1:46549898-46549917 | MS.gene04079:intron | 20.0% |
| !!! | AATGCTAATTTTGTGTTATT+TGG | - | chr3.1:46549352-46549371 | MS.gene04079:intron | 20.0% |
| !!! | AGATCTATGATTTGAATTTT+AGG | - | chr3.1:46549657-46549676 | MS.gene04079:intron | 20.0% |
| !!! | ATGCTAATTTTGTGTTATTT+GGG | - | chr3.1:46549353-46549372 | MS.gene04079:intron | 20.0% |
| !!! | ATTTTAGTTTGAAACCTATA+AGG | - | chr3.1:46549450-46549469 | MS.gene04079:CDS | 20.0% |
| !!! | GATCTATGATTTGAATTTTA+GGG | - | chr3.1:46549658-46549677 | MS.gene04079:intron | 20.0% |
| !!! | TAATTGTTGAATGATTAGTT+TGG | - | chr3.1:46549223-46549242 | MS.gene04079:intron | 20.0% |
| !!! | TGTTAATTGATTGAATGTTT+TGG | - | chr3.1:46549279-46549298 | MS.gene04079:CDS | 20.0% |
| !!! | TTTTAGTTTGAAACCTATAA+GGG | - | chr3.1:46549451-46549470 | MS.gene04079:CDS | 20.0% |
| ! | AAAATCAGAAATCTTGTCTT+GGG | + | chr3.1:46550242-46550261 | None:intergenic | 25.0% |
| ! | ACACATAACTTTAACTACAA+AGG | + | chr3.1:46550013-46550032 | None:intergenic | 25.0% |
| ! | ATTTCATGGTTACATGTTAT+CGG | - | chr3.1:46549862-46549881 | MS.gene04079:intron | 25.0% |
| ! | CTATTAAAAAAGACCCTTAT+AGG | + | chr3.1:46549467-46549486 | None:intergenic | 25.0% |
| ! | GTGTTAAATTCTGTATGATT+TGG | - | chr3.1:46549927-46549946 | MS.gene04079:intron | 25.0% |
| ! | GTGTTAATTGATTGAATCTT+TGG | - | chr3.1:46549417-46549436 | MS.gene04079:intron | 25.0% |
| ! | TAAAAACATATGAACCACAA+TGG | + | chr3.1:46550175-46550194 | None:intergenic | 25.0% |
| !! | ATACATGAATTCTTTTACCA+AGG | - | chr3.1:46550816-46550835 | MS.gene04079:CDS | 25.0% |
| !! | TTAGTGTTAATTAGGGTTTT+GGG | - | chr3.1:46549199-46549218 | MS.gene04079:intron | 25.0% |
| !! | TTTAGTGTTAATTAGGGTTT+TGG | - | chr3.1:46549198-46549217 | MS.gene04079:intron | 25.0% |
| !! | TTTTGGTATCTATTTTGTTG+CGG | - | chr3.1:46549805-46549824 | MS.gene04079:intron | 25.0% |
| !!! | ATGATTAGTTTGGTGTTAAT+TGG | - | chr3.1:46549233-46549252 | MS.gene04079:intron | 25.0% |
| !!! | ATGTTTTGGTATCATATTTG+TGG | - | chr3.1:46550110-46550129 | MS.gene04079:intron | 25.0% |
| !!! | CTATAAGGGTCTTTTTTAAT+AGG | - | chr3.1:46549465-46549484 | MS.gene04079:CDS | 25.0% |
| !!! | GAACTTTTTTGCTAAAGAAT+GGG | - | chr3.1:46549615-46549634 | MS.gene04079:intron | 25.0% |
| !!! | GACTTATTTTCTGACTTATT+GGG | - | chr3.1:46550146-46550165 | MS.gene04079:intron | 25.0% |
| !!! | TGACTTATTTTCTGACTTAT+TGG | - | chr3.1:46550145-46550164 | MS.gene04079:intron | 25.0% |
| !!! | TGATTAGTTTGGTGTTAATT+GGG | - | chr3.1:46549234-46549253 | MS.gene04079:intron | 25.0% |
| !!! | TGCTAATTTTGTGTTATTTG+GGG | - | chr3.1:46549354-46549373 | MS.gene04079:intron | 25.0% |
| !!! | TGGTTCATATGTTTTTATAG+TGG | - | chr3.1:46550178-46550197 | MS.gene04079:intron | 25.0% |
| !!! | TGTTTTTGTAACTCTTCTTT+CGG | - | chr3.1:46549565-46549584 | MS.gene04079:CDS | 25.0% |
| ATAAAGAAACGAAACGTACT+AGG | + | chr3.1:46549159-46549178 | None:intergenic | 30.0% | |
| ATAGATACCAAAACATGAAC+AGG | + | chr3.1:46549798-46549817 | None:intergenic | 30.0% | |
| ATTACTATTAAGGCTGATGA+TGG | - | chr3.1:46549102-46549121 | MS.gene04079:intron | 30.0% | |
| CAAAATCAGAAATCTTGTCT+TGG | + | chr3.1:46550243-46550262 | None:intergenic | 30.0% | |
| GATGTTTATTTGCTTGATCT+TGG | - | chr3.1:46549511-46549530 | MS.gene04079:CDS | 30.0% | |
| GTATCTTAATGCAAATTGCA+GGG | + | chr3.1:46550800-46550819 | None:intergenic | 30.0% | |
| GTTCAATGTTAATTCTGCAT+GGG | - | chr3.1:46549391-46549410 | MS.gene04079:intron | 30.0% | |
| TAAAGAAACGAAACGTACTA+GGG | + | chr3.1:46549158-46549177 | None:intergenic | 30.0% | |
| TAGATACCAAAACATGAACA+GGG | + | chr3.1:46549797-46549816 | None:intergenic | 30.0% | |
| TGTAAAGATCTTAGTAGCAT+TGG | - | chr3.1:46550361-46550380 | MS.gene04079:intron | 30.0% | |
| TGTATCTTAATGCAAATTGC+AGG | + | chr3.1:46550801-46550820 | None:intergenic | 30.0% | |
| TGTTCAATGTTAATTCTGCA+TGG | - | chr3.1:46549390-46549409 | MS.gene04079:intron | 30.0% | |
| TTACTATTAAGGCTGATGAT+GGG | - | chr3.1:46549103-46549122 | MS.gene04079:intron | 30.0% | |
| TTGTTTGGGTATCATAATTG+TGG | - | chr3.1:46549963-46549982 | MS.gene04079:intron | 30.0% | |
| ! | CACTTTTGTTCATCTGTTAT+AGG | - | chr3.1:46550397-46550416 | MS.gene04079:intron | 30.0% |
| ! | TCATCATCTTCCTCTATTTT+TGG | + | chr3.1:46550946-46550965 | None:intergenic | 30.0% |
| !! | GATTAGTTTGGTGTTAATTG+GGG | - | chr3.1:46549235-46549254 | MS.gene04079:intron | 30.0% |
| !! | TTTGTGTTATTTGGGGATTA+GGG | - | chr3.1:46549361-46549380 | MS.gene04079:intron | 30.0% |
| !!! | GGAACTTTTTTGCTAAAGAA+TGG | - | chr3.1:46549614-46549633 | MS.gene04079:intron | 30.0% |
| !!! | TTTTGTGTTATTTGGGGATT+AGG | - | chr3.1:46549360-46549379 | MS.gene04079:intron | 30.0% |
| AATTTCGATTGTTCCTCTAC+TGG | - | chr3.1:46548919-46548938 | MS.gene04079:CDS | 35.0% | |
| ATCTTGTACTCAACAACAAC+TGG | + | chr3.1:46550889-46550908 | None:intergenic | 35.0% | |
| CTGAATATGATGCCATTGTT+AGG | - | chr3.1:46550311-46550330 | MS.gene04079:intron | 35.0% | |
| GCTTTAGTGTTCAATACTGT+AGG | - | chr3.1:46549760-46549779 | MS.gene04079:intron | 35.0% | |
| GGGTATGAATCTGAACAATA+TGG | - | chr3.1:46549044-46549063 | MS.gene04079:CDS | 35.0% | |
| GTAACCATGAAATTGACCAA+GGG | + | chr3.1:46549855-46549874 | None:intergenic | 35.0% | |
| TAACCACACAAAAACAAGTC+AGG | + | chr3.1:46550209-46550228 | None:intergenic | 35.0% | |
| TCATACCCATAGAAAGATTC+CGG | + | chr3.1:46549032-46549051 | None:intergenic | 35.0% | |
| TGTAACCATGAAATTGACCA+AGG | + | chr3.1:46549856-46549875 | None:intergenic | 35.0% | |
| ! | GGACTTTTTATAAGCGTTAC+AGG | - | chr3.1:46550633-46550652 | MS.gene04079:intron | 35.0% |
| ! | TTCACTTCTCAAGAAGGTTT+TGG | - | chr3.1:46548867-46548886 | MS.gene04079:CDS | 35.0% |
| !! | TTTGGTGTTAATTGGGGTTA+GGG | - | chr3.1:46549241-46549260 | MS.gene04079:CDS | 35.0% |
| !!! | TGATTTTGAGATGAAGCTGA+TGG | - | chr3.1:46550255-46550274 | MS.gene04079:intron | 35.0% |
| !!! | TTTTACATGGCTGTTTTTGC+TGG | - | chr3.1:46550722-46550741 | MS.gene04079:CDS | 35.0% |
| AACGCTTATAAAAAGTCCCC+AGG | + | chr3.1:46550631-46550650 | None:intergenic | 40.0% | |
| ACGCTTATAAAAAGTCCCCA+GGG | + | chr3.1:46550630-46550649 | None:intergenic | 40.0% | |
| AGATGCTTGTATGCTGAGTA+GGG | - | chr3.1:46549593-46549612 | MS.gene04079:intron | 40.0% | |
| AGTTGTCATCTCGGTTACTA+AGG | - | chr3.1:46550490-46550509 | MS.gene04079:intron | 40.0% | |
| ATAGTAACTGTGCTGGACAA+AGG | + | chr3.1:46550847-46550866 | None:intergenic | 40.0% | |
| ATCTTGTATGTGCCCTGTTT+GGG | - | chr3.1:46549702-46549721 | MS.gene04079:intron | 40.0% | |
| GAAGTGAACCTTGAACTAGA+CGG | + | chr3.1:46548855-46548874 | None:intergenic | 40.0% | |
| GAGTACAAGATTGCTGAGAT+GGG | - | chr3.1:46550898-46550917 | MS.gene04079:CDS | 40.0% | |
| GGGTTATGTTAGGTTCTATC+TGG | - | chr3.1:46550918-46550937 | MS.gene04079:CDS | 40.0% | |
| TAGATGCTTGTATGCTGAGT+AGG | - | chr3.1:46549592-46549611 | MS.gene04079:intron | 40.0% | |
| TATCTTGTATGTGCCCTGTT+TGG | - | chr3.1:46549701-46549720 | MS.gene04079:intron | 40.0% | |
| TCAAGGTTCACTTCTCAAGA+AGG | - | chr3.1:46548861-46548880 | MS.gene04079:CDS | 40.0% | |
| TCTATGACAGTAGCATCATC+AGG | + | chr3.1:46550760-46550779 | None:intergenic | 40.0% | |
| TGAGTACAAGATTGCTGAGA+TGG | - | chr3.1:46550897-46550916 | MS.gene04079:CDS | 40.0% | |
| TGATACCCAAACAAGAACAG+AGG | + | chr3.1:46549957-46549976 | None:intergenic | 40.0% | |
| TGTGACCGGAATCTTTCTAT+GGG | - | chr3.1:46549024-46549043 | MS.gene04079:CDS | 40.0% | |
| TGTTAATTGGGGTTAGGGTT+TGG | - | chr3.1:46549246-46549265 | MS.gene04079:CDS | 40.0% | |
| TTATAAAAAGTCCCCAGGGT+TGG | + | chr3.1:46550626-46550645 | None:intergenic | 40.0% | |
| TTATCACATGTTCCAACCCT+GGG | - | chr3.1:46550611-46550630 | MS.gene04079:intron | 40.0% | |
| TTATTTGGGGATTAGGGCTT+TGG | - | chr3.1:46549367-46549386 | MS.gene04079:intron | 40.0% | |
| TTGTGTTGCAGTTGTCATCT+CGG | - | chr3.1:46550481-46550500 | MS.gene04079:intron | 40.0% | |
| TTTATCACATGTTCCAACCC+TGG | - | chr3.1:46550610-46550629 | MS.gene04079:intron | 40.0% | |
| ! | CTATCTGGCTCCAAAAATAG+AGG | - | chr3.1:46550933-46550952 | MS.gene04079:CDS | 40.0% |
| ! | GGTATCCTCTGTTCTTGTTT+GGG | - | chr3.1:46549949-46549968 | MS.gene04079:intron | 40.0% |
| ! | GGTGTGAAGTTTTCAACCAA+GGG | - | chr3.1:46550515-46550534 | MS.gene04079:intron | 40.0% |
| ! | TCTCTGCTCTGTTCATGTTT+TGG | - | chr3.1:46550096-46550115 | MS.gene04079:intron | 40.0% |
| ! | TTAGAACTCCGTCTAGTTCA+AGG | - | chr3.1:46548844-46548863 | MS.gene04079:CDS | 40.0% |
| ! | TTTTCAACCAAGGGTGACAT+TGG | - | chr3.1:46550524-46550543 | MS.gene04079:intron | 40.0% |
| !! | GTTTGGTGTTAATTGGGGTT+AGG | - | chr3.1:46549240-46549259 | MS.gene04079:CDS | 40.0% |
| !! | TTGCTGAGATGGGTTATGTT+AGG | - | chr3.1:46550908-46550927 | MS.gene04079:CDS | 40.0% |
| !!! | GAAGGTTTTGGAATCGATCA+AGG | - | chr3.1:46548879-46548898 | MS.gene04079:CDS | 40.0% |
| !!! | GATCCTGACTTGTTTTTGTG+TGG | - | chr3.1:46550203-46550222 | MS.gene04079:intron | 40.0% |
| AATGCAAATTGCAGGGACAC+AGG | + | chr3.1:46550793-46550812 | None:intergenic | 45.0% | |
| ACTAGGGCTTTCGAACATGA+AGG | + | chr3.1:46549142-46549161 | None:intergenic | 45.0% | |
| AGCAGATGGCATCCTAACAA+TGG | + | chr3.1:46550326-46550345 | None:intergenic | 45.0% | |
| AGTTAAGCATGCACCCAAAC+AGG | + | chr3.1:46549718-46549737 | None:intergenic | 45.0% | |
| ATCCTAGCAAACTCAGCAGA+TGG | + | chr3.1:46550340-46550359 | None:intergenic | 45.0% | |
| ATGGCATCATATTCAGCCTC+CGG | + | chr3.1:46550307-46550326 | None:intergenic | 45.0% | |
| CAGACTGATAGTAACTGTGC+TGG | + | chr3.1:46550854-46550873 | None:intergenic | 45.0% | |
| CTAGCCCTTGGTCAATTTCA+TGG | - | chr3.1:46549848-46549867 | MS.gene04079:intron | 45.0% | |
| CTGTGACCGGAATCTTTCTA+TGG | - | chr3.1:46549023-46549042 | MS.gene04079:CDS | 45.0% | |
| GACTTATTGGGTAGCCATTG+TGG | - | chr3.1:46550158-46550177 | MS.gene04079:intron | 45.0% | |
| GCTAGAATCCATGGCTTGAA+GGG | + | chr3.1:46548950-46548969 | None:intergenic | 45.0% | |
| GGGTATCCTCTGTTCTTGTT+TGG | - | chr3.1:46549948-46549967 | MS.gene04079:intron | 45.0% | |
| GTCATCTCGGTTACTAAGGA+GGG | - | chr3.1:46550494-46550513 | MS.gene04079:intron | 45.0% | |
| GTTAAGCATGCACCCAAACA+GGG | + | chr3.1:46549717-46549736 | None:intergenic | 45.0% | |
| TAGTGAGCACCTTGGAATTC+CGG | - | chr3.1:46550285-46550304 | MS.gene04079:intron | 45.0% | |
| TATCACATGTTCCAACCCTG+GGG | - | chr3.1:46550612-46550631 | MS.gene04079:intron | 45.0% | |
| TGTCATCTCGGTTACTAAGG+AGG | - | chr3.1:46550493-46550512 | MS.gene04079:intron | 45.0% | |
| TTGAAGGGAGAAACCAGTAG+AGG | + | chr3.1:46548935-46548954 | None:intergenic | 45.0% | |
| TTGAGCATTATCGCTGTGAC+CGG | - | chr3.1:46549010-46549029 | MS.gene04079:CDS | 45.0% | |
| ! | ATTGGGGTTAGGGTTTGGTT+TGG | - | chr3.1:46549251-46549270 | MS.gene04079:CDS | 45.0% |
| ! | GAGCTGCAAACATAGTTTGC+AGG | - | chr3.1:46550546-46550565 | MS.gene04079:intron | 45.0% |
| ! | GGGTGTGAAGTTTTCAACCA+AGG | - | chr3.1:46550514-46550533 | MS.gene04079:intron | 45.0% |
| ! | TGTGTGCCCTGTTCATGTTT+TGG | - | chr3.1:46549788-46549807 | MS.gene04079:intron | 45.0% |
| ! | TTGGGGTTAGGGTTTGGTTT+GGG | - | chr3.1:46549252-46549271 | MS.gene04079:CDS | 45.0% |
| !! | CTTAGTAGCATTGGTGACAC+TGG | - | chr3.1:46550370-46550389 | MS.gene04079:intron | 45.0% |
| AGCCACATGGCTAGAATCCA+TGG | + | chr3.1:46548959-46548978 | None:intergenic | 50.0% | |
| AGCCATGGATTCTAGCCATG+TGG | - | chr3.1:46548954-46548973 | MS.gene04079:CDS | 50.0% | |
| ATTCAGCCTCCGGAATTCCA+AGG | + | chr3.1:46550297-46550316 | None:intergenic | 50.0% | |
| GACATCGATAGTGAGCACCT+TGG | - | chr3.1:46550277-46550296 | MS.gene04079:intron | 50.0% | |
| GCAGAACACTACTGTGGACA+AGG | - | chr3.1:46550568-46550587 | MS.gene04079:intron | 50.0% | |
| GCGAAGATGTTGAAGTGTGC+TGG | - | chr3.1:46549066-46549085 | MS.gene04079:intron | 50.0% | |
| GGCTAGAATCCATGGCTTGA+AGG | + | chr3.1:46548951-46548970 | None:intergenic | 50.0% | |
| TGGTTTCTCCCTTCAAGCCA+TGG | - | chr3.1:46548939-46548958 | MS.gene04079:CDS | 50.0% | |
| TTGCAGGCAGAACACTACTG+TGG | - | chr3.1:46550562-46550581 | MS.gene04079:intron | 50.0% | |
| ! | CGCTTCTGCTTCGTTCTGAA+GGG | - | chr3.1:46548986-46549005 | MS.gene04079:CDS | 50.0% |
| ! | TGCCATCTGCTGAGTTTGCT+AGG | - | chr3.1:46550335-46550354 | MS.gene04079:intron | 50.0% |
| !! | TGGGGTTAGGGTTTGGTTTG+GGG | - | chr3.1:46549253-46549272 | MS.gene04079:CDS | 50.0% |
| ATGACCTGTGAGCTAGCCCT+TGG | - | chr3.1:46549836-46549855 | MS.gene04079:intron | 55.0% | |
| GCGCTTCTGCTTCGTTCTGA+AGG | - | chr3.1:46548985-46549004 | MS.gene04079:CDS | 55.0% | |
| GCTGGACAAAGGAGTTGCCT+TGG | + | chr3.1:46550836-46550855 | None:intergenic | 55.0% | |
| TGAGCACCTTGGAATTCCGG+AGG | - | chr3.1:46550288-46550307 | MS.gene04079:intron | 55.0% | |
| TGCAGCTCCAATGTCACCCT+TGG | + | chr3.1:46550534-46550553 | None:intergenic | 55.0% | |
| !! | TTGACCAAGGGCTAGCTCAC+AGG | + | chr3.1:46549843-46549862 | None:intergenic | 55.0% |
| GAAGCGCGACAAGAGCCACA+TGG | + | chr3.1:46548972-46548991 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 46548841 | 46550987 | 46548841 | ID=MS.gene04079 |
| chr3.1 | mRNA | 46548841 | 46550987 | 46548841 | ID=MS.gene04079.t1;Parent=MS.gene04079 |
| chr3.1 | exon | 46550669 | 46550987 | 46550669 | ID=MS.gene04079.t1.exon1;Parent=MS.gene04079.t1 |
| chr3.1 | CDS | 46550669 | 46550987 | 46550669 | ID=cds.MS.gene04079.t1;Parent=MS.gene04079.t1 |
| chr3.1 | exon | 46549437 | 46549589 | 46549437 | ID=MS.gene04079.t1.exon2;Parent=MS.gene04079.t1 |
| chr3.1 | CDS | 46549437 | 46549589 | 46549437 | ID=cds.MS.gene04079.t1;Parent=MS.gene04079.t1 |
| chr3.1 | exon | 46549239 | 46549336 | 46549239 | ID=MS.gene04079.t1.exon3;Parent=MS.gene04079.t1 |
| chr3.1 | CDS | 46549239 | 46549336 | 46549239 | ID=cds.MS.gene04079.t1;Parent=MS.gene04079.t1 |
| chr3.1 | exon | 46548841 | 46549071 | 46548841 | ID=MS.gene04079.t1.exon4;Parent=MS.gene04079.t1 |
| chr3.1 | CDS | 46548841 | 46549071 | 46548841 | ID=cds.MS.gene04079.t1;Parent=MS.gene04079.t1 |
| Gene Sequence |
| Protein sequence |
