AlfalfaGEDB | MS.gene08109

M. sativa cultivar XinJiangDaYe / MS.gene08109

KEGG: K04802
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006275 GO:0008150 GO:0009889 GO:0010556 GO:0019222 GO:0030234 GO:0030337 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0097159 GO:0098772 GO:1901363 GO:2000112
PFAM: PF00705.21 PF02747.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08109.t1	XP_013460113.1	99.6	266	1	0	1	266	1	266	4.60E-142	513.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08109.t1	O82134	96.2	265	10	0	1	265	1	265	8.3e-140	497.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08109.t1	A0A072UWC3	99.6	266	1	0	1	266	1	266	3.3e-142	513.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049596	MS.gene08109	0.843856	1.08E-58	-1.69E-46
MS.gene04972	MS.gene08109	0.828855	7.13E-55	-1.69E-46
MS.gene049989	MS.gene08109	0.857679	1.38E-62	-1.69E-46
MS.gene050297	MS.gene08109	0.846312	2.35E-59	-1.69E-46
MS.gene05124	MS.gene08109	0.853962	1.69E-61	-1.69E-46
MS.gene051263	MS.gene08109	0.810451	1.15E-50	-1.69E-46
MS.gene051629	MS.gene08109	0.810282	1.25E-50	-1.69E-46
MS.gene051816	MS.gene08109	0.803809	2.92E-49	-1.69E-46
MS.gene052143	MS.gene08109	0.802549	5.32E-49	-1.69E-46
MS.gene052367	MS.gene08109	0.844276	8.36E-59	-1.69E-46
MS.gene053173	MS.gene08109	0.889232	2.91E-73	-1.69E-46
MS.gene053348	MS.gene08109	0.835179	1.95E-56	-1.69E-46
MS.gene053416	MS.gene08109	0.870821	1.09E-66	-1.69E-46
MS.gene053417	MS.gene08109	0.868025	8.87E-66	-1.69E-46
MS.gene05369	MS.gene08109	0.824417	8.16E-54	-1.69E-46
MS.gene054459	MS.gene08109	0.806617	7.54E-50	-1.69E-46
MS.gene054551	MS.gene08109	0.88655	3.10E-72	-1.69E-46
MS.gene054593	MS.gene08109	0.84536	4.26E-59	-1.69E-46
MS.gene054633	MS.gene08109	0.802189	6.31E-49	-1.69E-46
MS.gene054643	MS.gene08109	0.830677	2.57E-55	-1.69E-46
MS.gene054662	MS.gene08109	0.825012	5.91E-54	-1.69E-46
MS.gene055308	MS.gene08109	0.827696	1.36E-54	-1.69E-46
MS.gene055578	MS.gene08109	0.80887	2.50E-50	-1.69E-46
MS.gene055957	MS.gene08109	0.862173	6.11E-64	-1.69E-46
MS.gene056041	MS.gene08109	0.852322	4.98E-61	-1.69E-46
MS.gene05640	MS.gene08109	0.926931	2.38E-91	-1.69E-46
MS.gene056526	MS.gene08109	0.817827	2.69E-52	-1.69E-46
MS.gene057367	MS.gene08109	0.835208	1.92E-56	-1.69E-46
MS.gene057458	MS.gene08109	0.85373	1.97E-61	-1.69E-46
MS.gene058818	MS.gene08109	0.848168	7.28E-60	-1.69E-46
MS.gene058844	MS.gene08109	0.840005	1.13E-57	-1.69E-46
MS.gene058853	MS.gene08109	0.826897	2.11E-54	-1.69E-46
MS.gene059553	MS.gene08109	0.823532	1.32E-53	-1.69E-46
MS.gene060275	MS.gene08109	0.802298	6.00E-49	-1.69E-46
MS.gene060473	MS.gene08109	0.841683	4.10E-58	-1.69E-46
MS.gene060565	MS.gene08109	0.832395	9.69E-56	-1.69E-46
MS.gene06093	MS.gene08109	0.885391	8.47E-72	-1.69E-46
MS.gene061099	MS.gene08109	0.809123	2.21E-50	-1.69E-46
MS.gene061260	MS.gene08109	0.843622	1.25E-58	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene08109	MS.gene043645	PPI
MS.gene08109	MS.gene08084	PPI
MS.gene08109	MS.gene014181	PPI
MS.gene08109	MS.gene005611	PPI
MS.gene08109	MS.gene04020	PPI
MS.gene08109	MS.gene020348	PPI
MS.gene08109	MS.gene49838	PPI
MS.gene08109	MS.gene013784	PPI
MS.gene08109	MS.gene96593	PPI
MS.gene08109	MS.gene035825	PPI
MS.gene08109	MS.gene028066	PPI
MS.gene08109	MS.gene072703	PPI
MS.gene08109	MS.gene049822	PPI
MS.gene08109	MS.gene55120	PPI
MS.gene08109	MS.gene43369	PPI
MS.gene20956	MS.gene08109	PPI
MS.gene08109	MS.gene070094	PPI
MS.gene08109	MS.gene06380	PPI
MS.gene08109	MS.gene003482	PPI
MS.gene041054	MS.gene08109	PPI
MS.gene08109	MS.gene018731	PPI
MS.gene08109	MS.gene42324	PPI
MS.gene03698	MS.gene08109	PPI
MS.gene08109	MS.gene070092	PPI
MS.gene08109	MS.gene04079	PPI
MS.gene08109	MS.gene007738	PPI
MS.gene84978	MS.gene08109	PPI
MS.gene08109	MS.gene73093	PPI
MS.gene057670	MS.gene08109	PPI
MS.gene08109	MS.gene010320	PPI
MS.gene08109	MS.gene044567	PPI
MS.gene08109	MS.gene013296	PPI
MS.gene08109	MS.gene050408	PPI
MS.gene08109	MS.gene026877	PPI
MS.gene035484	MS.gene08109	PPI
MS.gene08109	MS.gene41722	PPI
MS.gene08109	MS.gene009300	PPI
MS.gene08109	MS.gene04418	PPI
MS.gene08109	MS.gene47284	PPI
MS.gene08109	MS.gene24697	PPI
MS.gene08109	MS.gene55626	PPI
MS.gene08109	MS.gene82109	PPI
MS.gene08109	MS.gene63718	PPI
MS.gene08109	MS.gene024064	PPI
MS.gene035826	MS.gene08109	PPI
MS.gene08109	MS.gene84545	PPI
MS.gene08109	MS.gene043643	PPI
MS.gene08109	MS.gene049768	PPI
MS.gene03199	MS.gene08109	PPI
MS.gene014498	MS.gene08109	PPI
MS.gene08109	MS.gene073732	PPI
MS.gene08109	MS.gene23508	PPI
MS.gene08109	MS.gene014499	PPI
MS.gene000365	MS.gene08109	PPI
MS.gene08109	MS.gene064353	PPI
MS.gene08109	MS.gene017982	PPI
MS.gene21089	MS.gene08109	PPI
MS.gene08109	MS.gene047599	PPI
MS.gene08109	MS.gene028064	PPI
MS.gene84977	MS.gene08109	PPI
MS.gene08109	MS.gene064682	PPI
MS.gene75426	MS.gene08109	PPI
MS.gene08109	MS.gene20720	PPI
MS.gene08109	MS.gene050299	PPI
MS.gene08109	MS.gene52850	PPI
MS.gene08109	MS.gene045065	PPI
MS.gene08109	MS.gene46262	PPI
MS.gene08109	MS.gene97025	PPI
MS.gene08109	MS.gene69196	PPI
MS.gene08109	MS.gene002263	PPI
MS.gene04541	MS.gene08109	PPI
MS.gene08109	MS.gene02221	PPI
MS.gene08109	MS.gene40912	PPI
MS.gene08109	MS.gene02591	PPI
MS.gene08109	MS.gene03698	PPI
MS.gene08109	MS.gene52605	PPI
MS.gene08109	MS.gene68716	PPI
MS.gene68113	MS.gene08109	PPI
MS.gene08109	MS.gene03699	PPI
MS.gene08109	MS.gene07203	PPI
MS.gene87898	MS.gene08109	PPI
MS.gene08109	MS.gene026875	PPI
MS.gene08109	MS.gene41343	PPI
MS.gene08109	MS.gene038750	PPI
MS.gene08109	MS.gene41419	PPI
MS.gene08109	MS.gene033505	PPI
MS.gene08109	MS.gene037044	PPI
MS.gene99872	MS.gene08109	PPI
MS.gene08109	MS.gene53708	PPI
MS.gene08109	MS.gene79893	PPI
MS.gene08109	MS.gene042871	PPI
MS.gene08109	MS.gene067802	PPI
MS.gene08109	MS.gene63395	PPI
MS.gene08109	MS.gene34478	PPI
MS.gene08109	MS.gene04094	PPI
MS.gene08109	MS.gene004127	PPI
MS.gene08109	MS.gene058795	PPI
MS.gene07741	MS.gene08109	PPI
MS.gene08109	MS.gene75670	PPI
MS.gene08109	MS.gene063067	PPI
MS.gene08109	MS.gene52112	PPI
MS.gene006309	MS.gene08109	PPI
MS.gene08109	MS.gene04620	PPI
MS.gene035828	MS.gene08109	PPI
MS.gene08109	MS.gene09124	PPI
MS.gene51874	MS.gene08109	PPI
MS.gene08109	MS.gene09125	PPI
MS.gene08211	MS.gene08109	PPI
MS.gene08109	MS.gene015179	PPI
MS.gene08109	MS.gene043595	PPI
MS.gene08109	MS.gene060219	PPI
MS.gene08109	MS.gene011421	PPI
MS.gene08109	MS.gene01240	PPI
MS.gene08109	MS.gene040755	PPI
MS.gene08109	MS.gene65249	PPI
MS.gene08109	MS.gene49075	PPI
MS.gene08109	MS.gene04400	PPI
MS.gene08109	MS.gene77531	PPI
MS.gene08109	MS.gene005383	PPI
MS.gene04501	MS.gene08109	PPI
MS.gene08109	MS.gene007737	PPI
MS.gene08109	MS.gene62799	PPI
MS.gene08109	MS.gene064351	PPI
MS.gene08109	MS.gene049767	PPI
MS.gene79799	MS.gene08109	PPI
MS.gene08109	MS.gene28806	PPI
MS.gene08109	MS.gene72993	PPI
MS.gene08109	MS.gene93335	PPI
MS.gene08109	MS.gene043593	PPI
MS.gene08109	MS.gene02570	PPI
MS.gene08109	MS.gene066960	PPI
MS.gene08109	MS.gene004126	PPI
MS.gene05640	MS.gene08109	PPI
MS.gene08109	MS.gene007196	PPI
MS.gene08109	MS.gene060573	PPI
MS.gene08109	MS.gene52656	PPI
MS.gene08109	MS.gene64653	PPI
MS.gene08109	MS.gene045358	PPI
MS.gene08109	MS.gene049824	PPI
MS.gene049266	MS.gene08109	PPI
MS.gene08109	MS.gene072401	PPI
MS.gene08109	MS.gene07047	PPI
MS.gene013822	MS.gene08109	PPI
MS.gene08109	MS.gene033382	PPI
MS.gene08109	MS.gene72840	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08109.t1	MTR_3g462130	99.624	266	1	0	1	266	1	266	0.0	545

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08109.t1	AT2G29570	89.057	265	28	1	1	265	1	264	5.97e-179	493
MS.gene08109.t1	AT1G07370	90.152	264	25	1	1	264	1	263	1.59e-178	491

Find 61 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCACTTCTCAAGAAGGTTT+TGG	0.265918	3.3:-49902274	MS.gene08109:CDS
CTGTGACCGGAATCTTTCTA+TGG	0.275091	3.3:-49902118	MS.gene08109:CDS
TGATGATATCATTACTATTA+AGG	0.286022	3.3:-49902049	MS.gene08109:CDS
TAGTGAGCACCTTGGAATTC+CGG	0.336220	3.3:-49900642	MS.gene08109:CDS
TTGCTGAGATGGGTTATGTT+AGG	0.359199	3.3:-49900018	MS.gene08109:CDS
GGGTTATGTTAGGTTCTATC+TGG	0.362548	3.3:-49900008	MS.gene08109:CDS
CATCTATATCCAACTAAACT+TGG	0.366524	3.3:+49899948	None:intergenic
GGGCATGAATCTGAACAATA+TGG	0.379117	3.3:-49902097	MS.gene08109:CDS
TTAGAACTCCGTCTAGTTCA+AGG	0.383436	3.3:-49902297	MS.gene08109:CDS
AAAATCAGAAATCTTGTCTT+GGG	0.388430	3.3:+49900688	None:intergenic
GAGCTGCAAACATAGTTTGC+AGG	0.393234	3.3:-49900379	MS.gene08109:CDS
CAAAATCAGAAATCTTGTCT+TGG	0.404879	3.3:+49900687	None:intergenic
GCGCTTCTGCTTCGTTCTGA+AGG	0.415834	3.3:-49902156	MS.gene08109:CDS
GGCTAGAATCCATGGCTTGA+AGG	0.422356	3.3:+49902193	None:intergenic
ATCCAACTAAACTTGGGGCT+TGG	0.430031	3.3:+49899955	None:intergenic
AATTTCGATTGTTCCTCTAC+TGG	0.431335	3.3:-49902222	MS.gene08109:CDS
TCATGCCCATAGAAAGATTC+CGG	0.434760	3.3:+49902112	None:intergenic
CGCTTCTGCTTCGTTCTGAA+GGG	0.435644	3.3:-49902155	MS.gene08109:CDS
TGGTTTCTCCCTTCAAGCCA+TGG	0.440163	3.3:-49902202	MS.gene08109:CDS
AGTTGTCATCTCGGTTACTA+AGG	0.450206	3.3:-49900435	MS.gene08109:CDS
CTGAATATGATGCCATTGTT+AGG	0.450696	3.3:-49900616	MS.gene08109:CDS
TGTAAAGATCTTAGTAGCAT+TGG	0.452246	3.3:-49900566	MS.gene08109:CDS
TGCAGCTCCAATGTCACCCT+TGG	0.455509	3.3:+49900394	None:intergenic
ATTACTATTAAGGCTGATGA+TGG	0.460832	3.3:-49902039	MS.gene08109:CDS
ATCTATATCCAACTAAACTT+GGG	0.464393	3.3:+49899949	None:intergenic
TCAAGGTTCACTTCTCAAGA+AGG	0.468437	3.3:-49902280	MS.gene08109:CDS
TTGTGTTACAGTTGTCATCT+CGG	0.479158	3.3:-49900444	MS.gene08109:intron
TTGAGCATTATCGCTGTGAC+CGG	0.503477	3.3:-49902131	MS.gene08109:CDS
TCTATGACAGTAGCATCATC+AGG	0.509310	3.3:+49900169	None:intergenic
TGCCATCTGCTGAGTTTGCT+AGG	0.512820	3.3:-49900592	MS.gene08109:CDS
AGCCACATGGCTAGAATCCA+TGG	0.524151	3.3:+49902185	None:intergenic
CAGACTGATGGTAACTGTGC+TGG	0.524507	3.3:+49900075	None:intergenic
GCTAGAATCCATGGCTTGAA+GGG	0.531266	3.3:+49902194	None:intergenic
ATGGCATCATATTCAGCCTC+CGG	0.535879	3.3:+49900623	None:intergenic
TGAGTACAAAATTGCTGAGA+TGG	0.536273	3.3:-49900029	MS.gene08109:CDS
CTTAGTAGCATTGGTGACAC+TGG	0.547229	3.3:-49900557	MS.gene08109:intron
TGTCATCTCGGTTACTAAGG+AGG	0.575341	3.3:-49900432	MS.gene08109:CDS
TGTGACCGGAATCTTTCTAT+GGG	0.577072	3.3:-49902117	MS.gene08109:CDS
GTCATCTCGGTTACTAAGGA+GGG	0.577137	3.3:-49900431	MS.gene08109:CDS
GCGAAGATGTTGAAGTGTGC+TGG	0.584665	3.3:-49902075	MS.gene08109:CDS
ATCCTAGCAAACTCAGCAGA+TGG	0.593618	3.3:+49900590	None:intergenic
GTATCTTAATGCAAATTGCA+AGG	0.597267	3.3:+49900129	None:intergenic
GCTGGACAAAGGAGTTGCCT+TGG	0.607604	3.3:+49900093	None:intergenic
TTACTATTAAGGCTGATGAT+GGG	0.610804	3.3:-49902038	MS.gene08109:CDS
GAAGCGCGACAAGAGCCACA+TGG	0.615310	3.3:+49902172	None:intergenic
TCTATATCCAACTAAACTTG+GGG	0.615964	3.3:+49899950	None:intergenic
TAGTTCATTTGACAGACTGA+TGG	0.616907	3.3:+49900063	None:intergenic
ATTCAGCCTCCGGAATTCCA+AGG	0.619118	3.3:+49900633	None:intergenic
AATGCAAATTGCAAGGACAC+AGG	0.621947	3.3:+49900136	None:intergenic
GAGTACAAAATTGCTGAGAT+GGG	0.628489	3.3:-49900028	MS.gene08109:CDS
ATGGTAACTGTGCTGGACAA+AGG	0.631448	3.3:+49900082	None:intergenic
GCAGAACACTACTGTGGACA+AGG	0.634025	3.3:-49900357	MS.gene08109:intron
AACTAGACGGAGTTCTAACA+TGG	0.638008	3.3:+49902302	None:intergenic
GACATTGATAGTGAGCACCT+TGG	0.640024	3.3:-49900650	MS.gene08109:CDS
AGCAGATGGCATCCTAACAA+TGG	0.641376	3.3:+49900604	None:intergenic
ACTAGGGCTTTCGAACATGA+AGG	0.649583	3.3:+49902002	None:intergenic
AGCCATGGATTCTAGCCATG+TGG	0.681036	3.3:-49902187	MS.gene08109:CDS
TGAGCACCTTGGAATTCCGG+AGG	0.683837	3.3:-49900639	MS.gene08109:CDS
GAAGTGAACCTTGAACTAGA+CGG	0.688677	3.3:+49902289	None:intergenic
TTGAAGGGAGAAACCAGTAG+AGG	0.689800	3.3:+49902209	None:intergenic
TTGCAGGCAGAACACTACTG+TGG	0.709888	3.3:-49900363	MS.gene08109:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATTTTTAGTGTTAATTA+GGG	-	chr3.3:49900312-49900331	MS.gene08109:intron	10.0%
!!!	TTTTATTTTTAGTGTTAATT+AGG	-	chr3.3:49900311-49900330	MS.gene08109:intron	10.0%
!!	GATGTATTTGATAAATTTAA+GGG	-	chr3.3:49901392-49901411	MS.gene08109:intron	15.0%
!!	TATTGTTTGATATAACATTA+TGG	-	chr3.3:49900974-49900993	MS.gene08109:intron	15.0%
!!	TGATGTATTTGATAAATTTA+AGG	-	chr3.3:49901391-49901410	MS.gene08109:intron	15.0%
!!!	ATTTTAGTTTGAAATCTATA+TGG	-	chr3.3:49900571-49900590	MS.gene08109:CDS	15.0%
!!!	TTTTAATTGACATTTTTACA+TGG	-	chr3.3:49902044-49902063	MS.gene08109:CDS	15.0%
!!!	TTTTAGTTTGAAATCTATAT+GGG	-	chr3.3:49900572-49900591	MS.gene08109:CDS	15.0%
!!	AGATTATAAAATCTCAAAAC+AGG	+	chr3.3:49900826-49900845	None:intergenic	20.0%
!!	AGTTAAATTCTGTATGATTT+GGG	-	chr3.3:49901277-49901296	MS.gene08109:intron	20.0%
!!	GATTATAAAATCTCAAAACA+GGG	+	chr3.3:49900825-49900844	None:intergenic	20.0%
!!	TGATGATATCATTACTATTA+AGG	-	chr3.3:49900212-49900231	MS.gene08109:intron	20.0%
!!!	AACTTATTTTTGCTAAAGAA+TGG	-	chr3.3:49900723-49900742	MS.gene08109:intron	20.0%
!!!	ACTTATTTTTGCTAAAGAAT+GGG	-	chr3.3:49900724-49900743	MS.gene08109:intron	20.0%
!!!	AGATTTTAAATTGAAATCTC+AGG	-	chr3.3:49900430-49900449	MS.gene08109:CDS	20.0%
!!!	GATCTATGATTTGAATTTTA+GGG	-	chr3.3:49900767-49900786	MS.gene08109:intron	20.0%
!!!	GATTTTAAATTGAAATCTCA+GGG	-	chr3.3:49900431-49900450	MS.gene08109:CDS	20.0%
!!!	TAATTGTTGAATGATTAGTT+TGG	-	chr3.3:49900343-49900362	MS.gene08109:intron	20.0%
!!!	TATATGGGTCTTTTTTTAAT+GGG	-	chr3.3:49900587-49900606	MS.gene08109:CDS	20.0%
!!!	TGATCTATGATTTGAATTTT+AGG	-	chr3.3:49900766-49900785	MS.gene08109:intron	20.0%
!!!	TGTTAATTGATTCAATGTTT+TGG	-	chr3.3:49900399-49900418	MS.gene08109:CDS	20.0%
!!!	TTAATTATTGATTGAATCCT+TGG	-	chr3.3:49900538-49900557	MS.gene08109:intron	20.0%
!	AAAATCAGAAATCTTGTCTT+GGG	+	chr3.3:49901576-49901595	None:intergenic	25.0%
!	ACAAATAACTTGAACTACAA+AGG	+	chr3.3:49901359-49901378	None:intergenic	25.0%
!	ATGTTACGGTATCATATTTA+TGG	-	chr3.3:49901456-49901475	MS.gene08109:intron	25.0%
!	GAGTTAAATTCTGTATGATT+TGG	-	chr3.3:49901276-49901295	MS.gene08109:intron	25.0%
!	GATACATTTGATCAATTTCA+GGG	-	chr3.3:49901087-49901106	MS.gene08109:intron	25.0%
!	GGTCTATTTGATAAATTTCA+GGG	-	chr3.3:49901248-49901267	MS.gene08109:intron	25.0%
!	GTTCAATGTTAATTCTTTGT+GGG	-	chr3.3:49900509-49900528	MS.gene08109:intron	25.0%
!	TAATAACATATGAACCACAA+TGG	+	chr3.3:49901509-49901528	None:intergenic	25.0%
!	TGAAATTTCATGTCTGATAT+TGG	-	chr3.3:49900618-49900637	MS.gene08109:CDS	25.0%
!	TGATACATTTGATCAATTTC+AGG	-	chr3.3:49901086-49901105	MS.gene08109:intron	25.0%
!	TGGTCTATTTGATAAATTTC+AGG	-	chr3.3:49901247-49901266	MS.gene08109:intron	25.0%
!	TGTTCAATGTTAATTCTTTG+TGG	-	chr3.3:49900508-49900527	MS.gene08109:intron	25.0%
!!	ATACATGAATTCTTTTACCA+AGG	-	chr3.3:49902151-49902170	MS.gene08109:CDS	25.0%
!!	TTAGTGTTAATTAGGGTTTT+GGG	-	chr3.3:49900319-49900338	MS.gene08109:intron	25.0%
!!	TTTAGTGTTAATTAGGGTTT+TGG	-	chr3.3:49900318-49900337	MS.gene08109:intron	25.0%
!!	TTTTGGTATCTATTTTGTTG+TGG	-	chr3.3:49901154-49901173	MS.gene08109:intron	25.0%
!!!	ATGATTAGTTTGGTGTTAAT+TGG	-	chr3.3:49900353-49900372	MS.gene08109:intron	25.0%
!!!	CTATATGGGTCTTTTTTTAA+TGG	-	chr3.3:49900586-49900605	MS.gene08109:CDS	25.0%
!!!	TGATTAGTTTGGTGTTAATT+GGG	-	chr3.3:49900354-49900373	MS.gene08109:intron	25.0%
	ATAAAGAAACGAAACGTACT+AGG	+	chr3.3:49900279-49900298	None:intergenic	30.0%
	ATTACTATTAAGGCTGATGA+TGG	-	chr3.3:49900222-49900241	MS.gene08109:intron	30.0%
	ATTTCAGGGTTACATGTTAA+CGG	-	chr3.3:49901211-49901230	MS.gene08109:intron	30.0%
	CAAAATCAGAAATCTTGTCT+TGG	+	chr3.3:49901577-49901596	None:intergenic	30.0%
	CTAAAATCAAACAGAAACCA+AGG	+	chr3.3:49900558-49900577	None:intergenic	30.0%
	GTATCTTAATGCAAATTGCA+AGG	+	chr3.3:49902135-49902154	None:intergenic	30.0%
	TAAAGAAACGAAACGTACTA+GGG	+	chr3.3:49900278-49900297	None:intergenic	30.0%
	TCAAACAATATGAACTACAG+TGG	+	chr3.3:49900964-49900983	None:intergenic	30.0%
	TGCAACAAAAATGAAAACGT+TGG	+	chr3.3:49900882-49900901	None:intergenic	30.0%
	TGTAAAGATCTTAGTAGCAT+TGG	-	chr3.3:49901695-49901714	MS.gene08109:intron	30.0%
	TTAACATGTAACCCTGAAAT+TGG	+	chr3.3:49901211-49901230	None:intergenic	30.0%
	TTACGGTATCATATTTATGG+TGG	-	chr3.3:49901459-49901478	MS.gene08109:intron	30.0%
	TTACTATTAAGGCTGATGAT+GGG	-	chr3.3:49900223-49900242	MS.gene08109:intron	30.0%
	TTGTAGTTCCATATGTTATC+TGG	-	chr3.3:49901051-49901070	MS.gene08109:intron	30.0%
!	ATTTTGTACTCAACAACAAC+TGG	+	chr3.3:49902224-49902243	None:intergenic	30.0%
!	ATTTTTGTTGCATGCTTAAC+TGG	-	chr3.3:49900890-49900909	MS.gene08109:intron	30.0%
!	CACTTTTGTTCATCTGTTAT+AGG	-	chr3.3:49901731-49901750	MS.gene08109:intron	30.0%
!	TCATCATCTTCCTCTATTTT+TGG	+	chr3.3:49902281-49902300	None:intergenic	30.0%
!	TTATCACATTTTCCAACCAT+GGG	-	chr3.3:49901946-49901965	MS.gene08109:intron	30.0%
!	TTTATCACATTTTCCAACCA+TGG	-	chr3.3:49901945-49901964	MS.gene08109:intron	30.0%
!!	ATGCTAATTTCGTGCTATTT+AGG	-	chr3.3:49900473-49900492	MS.gene08109:intron	30.0%
!!	TGCTAATTTCGTGCTATTTA+GGG	-	chr3.3:49900474-49900493	MS.gene08109:intron	30.0%
!!	TTTGGTGTTAATTGGGATTA+GGG	-	chr3.3:49900361-49900380	MS.gene08109:CDS	30.0%
!!!	TTTTACATGGTTGTTTTTGC+TGG	-	chr3.3:49902057-49902076	MS.gene08109:CDS	30.0%
	AATTTCGATTGTTCCTCTAC+TGG	-	chr3.3:49900039-49900058	MS.gene08109:CDS	35.0%
	CTGAATATGATGCCATTGTT+AGG	-	chr3.3:49901645-49901664	MS.gene08109:intron	35.0%
	GAGTACAAAATTGCTGAGAT+GGG	-	chr3.3:49902233-49902252	MS.gene08109:CDS	35.0%
	GGTATCACTTGTGACTTATT+GGG	-	chr3.3:49901480-49901499	MS.gene08109:intron	35.0%
	TAGTTCATTTGACAGACTGA+TGG	+	chr3.3:49902201-49902220	None:intergenic	35.0%
	TGAGTACAAAATTGCTGAGA+TGG	-	chr3.3:49902232-49902251	MS.gene08109:CDS	35.0%
	TGGTATCACTTGTGACTTAT+TGG	-	chr3.3:49901479-49901498	MS.gene08109:intron	35.0%
	TGTTAATTGGGATTAGGGTT+TGG	-	chr3.3:49900366-49900385	MS.gene08109:CDS	35.0%
	TTATAAAAAGTCCCCATGGT+TGG	+	chr3.3:49901961-49901980	None:intergenic	35.0%
	TTGTGTTACAGTTGTCATCT+CGG	-	chr3.3:49901817-49901836	MS.gene08109:intron	35.0%
!	GGACTTTTTATAAGCGTTAC+AGG	-	chr3.3:49901968-49901987	MS.gene08109:intron	35.0%
!	TATCACATTTTCCAACCATG+GGG	-	chr3.3:49901947-49901966	MS.gene08109:intron	35.0%
!	TTCACTTCTCAAGAAGGTTT+TGG	-	chr3.3:49899987-49900006	MS.gene08109:CDS	35.0%
!!	GTTTGGTGTTAATTGGGATT+AGG	-	chr3.3:49900360-49900379	MS.gene08109:CDS	35.0%
!!	GTTTTAGTGTTCAATACTGC+AGG	-	chr3.3:49901109-49901128	MS.gene08109:intron	35.0%
!!	TTCGTGCTATTTAGGGATTA+GGG	-	chr3.3:49900481-49900500	MS.gene08109:intron	35.0%
!!	TTTCGTGCTATTTAGGGATT+AGG	-	chr3.3:49900480-49900499	MS.gene08109:intron	35.0%
!!!	TGATTTTGAGATGAAGCTGA+TGG	-	chr3.3:49901589-49901608	MS.gene08109:intron	35.0%
	AATGCAAATTGCAAGGACAC+AGG	+	chr3.3:49902128-49902147	None:intergenic	40.0%
	ACGCTTATAAAAAGTCCCCA+TGG	+	chr3.3:49901965-49901984	None:intergenic	40.0%
	ACTAAGTGGGATCAGTTACA+TGG	+	chr3.3:49901011-49901030	None:intergenic	40.0%
	AGCATGCACCAGATAACATA+TGG	+	chr3.3:49901062-49901081	None:intergenic	40.0%
	AGTTGTCATCTCGGTTACTA+AGG	-	chr3.3:49901826-49901845	MS.gene08109:intron	40.0%
	ATGGAACTACAACAACAACC+AGG	+	chr3.3:49901043-49901062	None:intergenic	40.0%
	ATGTAACTGATCCCACTTAG+TGG	-	chr3.3:49901010-49901029	MS.gene08109:intron	40.0%
	GAAGTGAACCTTGAACTAGA+CGG	+	chr3.3:49899975-49899994	None:intergenic	40.0%
	GGGCATGAATCTGAACAATA+TGG	-	chr3.3:49900164-49900183	MS.gene08109:CDS	40.0%
	GGGTTATGTTAGGTTCTATC+TGG	-	chr3.3:49902253-49902272	MS.gene08109:CDS	40.0%
	TAGCCACACAAAAACAAGTC+AGG	+	chr3.3:49901543-49901562	None:intergenic	40.0%
	TCAAGGTTCACTTCTCAAGA+AGG	-	chr3.3:49899981-49900000	MS.gene08109:CDS	40.0%
	TCATGCCCATAGAAAGATTC+CGG	+	chr3.3:49900152-49900171	None:intergenic	40.0%
	TCTATGACAGTAGCATCATC+AGG	+	chr3.3:49902095-49902114	None:intergenic	40.0%
	TGATACCCAAACAAGAACAG+AGG	+	chr3.3:49901306-49901325	None:intergenic	40.0%
	TGTAACTGATCCCACTTAGT+GGG	-	chr3.3:49901011-49901030	MS.gene08109:intron	40.0%
	TGTCTGCTCTGTTCATGTTA+CGG	-	chr3.3:49901442-49901461	MS.gene08109:intron	40.0%
	TGTGACCGGAATCTTTCTAT+GGG	-	chr3.3:49900144-49900163	MS.gene08109:CDS	40.0%
!	CTATCTGGCTCCAAAAATAG+AGG	-	chr3.3:49902268-49902287	MS.gene08109:CDS	40.0%
!	GGTATCCTCTGTTCTTGTTT+GGG	-	chr3.3:49901298-49901317	MS.gene08109:intron	40.0%
!	GGTGTGAAGTTTTCAACCAA+GGG	-	chr3.3:49901851-49901870	MS.gene08109:intron	40.0%
!	TGCTTAACTGGTCTAGAGTT+TGG	-	chr3.3:49900902-49900921	MS.gene08109:intron	40.0%
!	TGTGTGCTCTGTTCATGTTT+TGG	-	chr3.3:49901137-49901156	MS.gene08109:intron	40.0%
!	TTAGAACTCCGTCTAGTTCA+AGG	-	chr3.3:49899964-49899983	MS.gene08109:CDS	40.0%
!	TTTTCAACCAAGGGTGACAT+TGG	-	chr3.3:49901860-49901879	MS.gene08109:intron	40.0%
!!	TTGCTGAGATGGGTTATGTT+AGG	-	chr3.3:49902243-49902262	MS.gene08109:CDS	40.0%
!!!	GAAGGTTTTGGAATCGATCA+AGG	-	chr3.3:49899999-49900018	MS.gene08109:CDS	40.0%
!!!	GATCCTGACTTGTTTTTGTG+TGG	-	chr3.3:49901537-49901556	MS.gene08109:intron	40.0%
	ACTAGGGCTTTCGAACATGA+AGG	+	chr3.3:49900262-49900281	None:intergenic	45.0%
	AGAAGCTTGTATGCTGAGCA+GGG	-	chr3.3:49900700-49900719	MS.gene08109:intron	45.0%
	AGCAGATGGCATCCTAACAA+TGG	+	chr3.3:49901660-49901679	None:intergenic	45.0%
	ATCCTAGCAAACTCAGCAGA+TGG	+	chr3.3:49901674-49901693	None:intergenic	45.0%
	ATGGCATCATATTCAGCCTC+CGG	+	chr3.3:49901641-49901660	None:intergenic	45.0%
	ATGGTAACTGTGCTGGACAA+AGG	+	chr3.3:49902182-49902201	None:intergenic	45.0%
	CTGTGACCGGAATCTTTCTA+TGG	-	chr3.3:49900143-49900162	MS.gene08109:CDS	45.0%
	GACTTATTGGGTAGCCATTG+TGG	-	chr3.3:49901492-49901511	MS.gene08109:intron	45.0%
	GCTAGAATCCATGGCTTGAA+GGG	+	chr3.3:49900070-49900089	None:intergenic	45.0%
	GGGTATCCTCTGTTCTTGTT+TGG	-	chr3.3:49901297-49901316	MS.gene08109:intron	45.0%
	GTAACCCTGAAATTGGCCAA+AGG	+	chr3.3:49901204-49901223	None:intergenic	45.0%
	GTCATCTCGGTTACTAAGGA+GGG	-	chr3.3:49901830-49901849	MS.gene08109:intron	45.0%
	TAGAAGCTTGTATGCTGAGC+AGG	-	chr3.3:49900699-49900718	MS.gene08109:intron	45.0%
	TAGTGAGCACCTTGGAATTC+CGG	-	chr3.3:49901619-49901638	MS.gene08109:intron	45.0%
	TGTCATCTCGGTTACTAAGG+AGG	-	chr3.3:49901829-49901848	MS.gene08109:intron	45.0%
	TTGAAGGGAGAAACCAGTAG+AGG	+	chr3.3:49900055-49900074	None:intergenic	45.0%
	TTGAGCATTATCGCTGTGAC+CGG	-	chr3.3:49900130-49900149	MS.gene08109:CDS	45.0%
!	CAGGTCTTATCCCACTAAGT+GGG	+	chr3.3:49901024-49901043	None:intergenic	45.0%
!	CTAGCCTTTGGCCAATTTCA+GGG	-	chr3.3:49901197-49901216	MS.gene08109:intron	45.0%
!	GAGCTGCAAACATAGTTTGC+AGG	-	chr3.3:49901882-49901901	MS.gene08109:intron	45.0%
!	GGGTGTGAAGTTTTCAACCA+AGG	-	chr3.3:49901850-49901869	MS.gene08109:intron	45.0%
!!	ATGACTTGTGAGCTAGCCTT+TGG	-	chr3.3:49901185-49901204	MS.gene08109:intron	45.0%
!!	ATTGGGATTAGGGTTTGGTG+TGG	-	chr3.3:49900371-49900390	MS.gene08109:CDS	45.0%
!!	CTTAGTAGCATTGGTGACAC+TGG	-	chr3.3:49901704-49901723	MS.gene08109:intron	45.0%
!!	GACATTGATAGTGAGCACCT+TGG	-	chr3.3:49901611-49901630	MS.gene08109:intron	45.0%
!!	TTGGGATTAGGGTTTGGTGT+GGG	-	chr3.3:49900372-49900391	MS.gene08109:CDS	45.0%
	AGCCACATGGCTAGAATCCA+TGG	+	chr3.3:49900079-49900098	None:intergenic	50.0%
	AGCCATGGATTCTAGCCATG+TGG	-	chr3.3:49900074-49900093	MS.gene08109:CDS	50.0%
	ATTCAGCCTCCGGAATTCCA+AGG	+	chr3.3:49901631-49901650	None:intergenic	50.0%
	CAGACTGATGGTAACTGTGC+TGG	+	chr3.3:49902189-49902208	None:intergenic	50.0%
	CCACTTAGTGGGATAAGACC+TGG	-	chr3.3:49901022-49901041	MS.gene08109:intron	50.0%
	GCAGAACACTACTGTGGACA+AGG	-	chr3.3:49901904-49901923	MS.gene08109:intron	50.0%
	GCGAAGATGTTGAAGTGTGC+TGG	-	chr3.3:49900186-49900205	MS.gene08109:intron	50.0%
	GGCTAGAATCCATGGCTTGA+AGG	+	chr3.3:49900071-49900090	None:intergenic	50.0%
	TGGTTTCTCCCTTCAAGCCA+TGG	-	chr3.3:49900059-49900078	MS.gene08109:CDS	50.0%
	TTAACGGTCGCGTGCTTAAC+TGG	-	chr3.3:49901227-49901246	MS.gene08109:intron	50.0%
	TTGCAGGCAGAACACTACTG+TGG	-	chr3.3:49901898-49901917	MS.gene08109:intron	50.0%
!	CCAGGTCTTATCCCACTAAG+TGG	+	chr3.3:49901025-49901044	None:intergenic	50.0%
!	CGCTTCTGCTTCGTTCTGAA+GGG	-	chr3.3:49900106-49900125	MS.gene08109:CDS	50.0%
!	TGCCATCTGCTGAGTTTGCT+AGG	-	chr3.3:49901669-49901688	MS.gene08109:intron	50.0%
!!	GCTAGCCTTTGGCCAATTTC+AGG	-	chr3.3:49901196-49901215	MS.gene08109:intron	50.0%
!!	TGGGATTAGGGTTTGGTGTG+GGG	-	chr3.3:49900373-49900392	MS.gene08109:CDS	50.0%
	GCGCTTCTGCTTCGTTCTGA+AGG	-	chr3.3:49900105-49900124	MS.gene08109:CDS	55.0%
	GCTGGACAAAGGAGTTGCCT+TGG	+	chr3.3:49902171-49902190	None:intergenic	55.0%
	TGAGCACCTTGGAATTCCGG+AGG	-	chr3.3:49901622-49901641	MS.gene08109:intron	55.0%
	TGCAGCTCCAATGTCACCCT+TGG	+	chr3.3:49901870-49901889	None:intergenic	55.0%
	GAAGCGCGACAAGAGCCACA+TGG	+	chr3.3:49900092-49900111	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	49899961	49902322	49899961	ID=MS.gene08109
chr3.3	mRNA	49899961	49902322	49899961	ID=MS.gene08109.t1;Parent=MS.gene08109
chr3.3	exon	49902004	49902322	49902004	ID=MS.gene08109.t1.exon1;Parent=MS.gene08109.t1
chr3.3	CDS	49902004	49902322	49902004	ID=cds.MS.gene08109.t1;Parent=MS.gene08109.t1
chr3.3	exon	49900558	49900710	49900558	ID=MS.gene08109.t1.exon2;Parent=MS.gene08109.t1
chr3.3	CDS	49900558	49900710	49900558	ID=cds.MS.gene08109.t1;Parent=MS.gene08109.t1
chr3.3	exon	49900358	49900455	49900358	ID=MS.gene08109.t1.exon3;Parent=MS.gene08109.t1
chr3.3	CDS	49900358	49900455	49900358	ID=cds.MS.gene08109.t1;Parent=MS.gene08109.t1
chr3.3	exon	49899961	49900191	49899961	ID=MS.gene08109.t1.exon4;Parent=MS.gene08109.t1
chr3.3	CDS	49899961	49900191	49899961	ID=cds.MS.gene08109.t1;Parent=MS.gene08109.t1

Gene Sequence

>MS.gene08109

ATGTTAGAACTCCGTCTAGTTCAAGGTTCACTTCTCAAGAAGGTTTTGGAATCGATCAAGGAACTCGTCAATGATGCAAATTTCGATTGTTCCTCTACTGGTTTCTCCCTTCAAGCCATGGATTCTAGCCATGTGGCTCTTGTCGCGCTTCTGCTTCGTTCTGAAGGGTTTGAGCATTATCGCTGTGACCGGAATCTTTCTATGGGCATGAATCTGAACAATATGGCGAAGATGTTGAAGTGTGCTGGTAATGATGATATCATTACTATTAAGGCTGATGATGGGAGTGATACTGTTACCTTCATGTTCGAAAGCCCTAGTACGTTTCGTTTCTTTATCGATTCTTTAATTTTTATTTTTAGTGTTAATTAGGGTTTTGGGCTAATTGTTGAATGATTAGTTTGGTGTTAATTGGGATTAGGGTTTGGTGTGGGGTTGTGTTAATTGATTCAATGTTTTGGTTTCTGTCAGATTTTAAATTGAAATCTCAGGGTTTAGTGTTAATTGATTGAATGCTAATTTCGTGCTATTTAGGGATTAGGGCTTGTGTTCAATGTTAATTCTTTGTGGGATTGTGTTAATTATTGATTGAATCCTTGGTTTCTGTTTGATTTTAGTTTGAAATCTATATGGGTCTTTTTTTAATGGGTTTATTGTTGAAATTTCATGTCTGATATTGGAGTAGTTATTCTTTTTTCTCATTTCTAAAAATGTTTTTGTAATTGTTCTTTCAGATTTTAGAAGCTTGTATGCTGAGCAGGGAACTTATTTTTGCTAAAGAATGGGTTTTTGTTGCATGCTTTACTGATCTATGATTTGAATTTTAGGGTTTATTGTTTAATTCTGTAATATTTGTATGTGCCCTGTTTTGAGATTTTATAATCTTGCATGTAGATTAAAGAACATATGTTCTTTTTACCAACGTTTTCATTTTTGTTGCATGCTTAACTGGTCTAGAGTTTGGTGTTTGATGTTGCATCACTTATGACTTATTAGTTAGCCACTGTAGTTCATATTGTTTGATATAACATTATGGCGTAATTTGATCCATGTAACTGATCCCACTTAGTGGGATAAGACCTGGTTGTTGTTGTAGTTCCATATGTTATCTGGTGCATGCTTAACTGATACATTTGATCAATTTCAGGGTTTTAGTGTTCAATACTGCAGGATTTGTGTGTGCTCTGTTCATGTTTTGGTATCTATTTTGTTGTGGTGTCACTTATGACTTGTGAGCTAGCCTTTGGCCAATTTCAGGGTTACATGTTAACGGTCGCGTGCTTAACTGGTCTATTTGATAAATTTCAGGGTTTTAGAGTTAAATTCTGTATGATTTGGGTATCCTCTGTTCTTGTTTGGGTATCATACTTGTGTCACTTATGAATTAAGAGTTAGCCTTTGTAGTTCAAGTTATTTGTTGTATGCTTAACTGATGTATTTGATAAATTTAAGGGTTTCAATGTTTAATTCTGTAAGATTTATGTCTGCTCTGTTCATGTTACGGTATCATATTTATGGTGGTATCACTTGTGACTTATTGGGTAGCCATTGTGGTTCATATGTTATTATAGTGTAAGATCCTGACTTGTTTTTGTGTGGCTATGTGATGAAGCCCAAGACAAGATTTCTGATTTTGAGATGAAGCTGATGGACATTGATAGTGAGCACCTTGGAATTCCGGAGGCTGAATATGATGCCATTGTTAGGATGCCATCTGCTGAGTTTGCTAGGATTTGTAAAGATCTTAGTAGCATTGGTGACACTGGTAATCACTTTTGTTCATCTGTTATAGGATTTTCTTCTAATGCTTGACTGTTCTTTTGAGTGTAGTGTTGATTAATATTTGTAATTTGCTGTTGTGTTACAGTTGTCATCTCGGTTACTAAGGAGGGTGTGAAGTTTTCAACCAAGGGTGACATTGGAGCTGCAAACATAGTTTGCAGGCAGAACACTACTGTGGACAAGGTGAGATATTGATTCATTTTTTATCACATTTTCCAACCATGGGGACTTTTTATAAGCGTTACAGGCTTGTAGCTAAAATGCTAAATGTGTTTTATTTGTGCTTGATTGTTGAATTTGATTTTAATTGACATTTTTACATGGTTGTTTTTGCTGGTTGATGTTGCAGCCTGATGATGCTACTGTCATAGAGATGAAAGAGCCTGTGTCCTTGCAATTTGCATTAAGATACATGAATTCTTTTACCAAGGCAACTCCTTTGTCCAGCACAGTTACCATCAGTCTGTCAAATGAACTACCAGTTGTTGTTGAGTACAAAATTGCTGAGATGGGTTATGTTAGGTTCTATCTGGCTCCAAAAATAGAGGAAGATGATGAAGAAACCAAGCCCCAAGTTTAG

Protein sequence

>MS.gene08109.t1

MLELRLVQGSLLKKVLESIKELVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLGIPEAEYDAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGAANIVCRQNTTVDKPDDATVIEMKEPVSLQFALRYMNSFTKATPLSSTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDDEETKPQV