Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61244.t1 | XP_013457552.1 | 92.4 | 327 | 7 | 5 | 7 | 332 | 22 | 331 | 2.80E-128 | 468.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61244.t1 | Q9FHE4 | 34.5 | 203 | 127 | 2 | 132 | 332 | 95 | 293 | 8.2e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61244.t1 | A0A072UR88 | 92.4 | 327 | 7 | 5 | 7 | 332 | 22 | 331 | 2.0e-128 | 468.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene61244 | 0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene049281 | MS.gene61244 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene61244 | -0.834441 | 2.99E-56 | -1.69E-46 |
| MS.gene050496 | MS.gene61244 | -0.825727 | 4.00E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene61244 | -0.801332 | 9.46E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene61244 | -0.808618 | 2.83E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene61244 | 0.803576 | 3.26E-49 | -1.69E-46 |
| MS.gene051517 | MS.gene61244 | 0.807419 | 5.10E-50 | -1.69E-46 |
| MS.gene051973 | MS.gene61244 | 0.834894 | 2.30E-56 | -1.69E-46 |
| MS.gene052494 | MS.gene61244 | 0.845758 | 3.33E-59 | -1.69E-46 |
| MS.gene053097 | MS.gene61244 | 0.828546 | 8.47E-55 | -1.69E-46 |
| MS.gene053218 | MS.gene61244 | 0.818807 | 1.62E-52 | -1.69E-46 |
| MS.gene054343 | MS.gene61244 | -0.813596 | 2.36E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene61244 | -0.834211 | 3.42E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene61244 | -0.861043 | 1.35E-63 | -1.69E-46 |
| MS.gene054959 | MS.gene61244 | 0.808528 | 2.96E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene61244 | -0.802245 | 6.15E-49 | -1.69E-46 |
| MS.gene055719 | MS.gene61244 | 0.817048 | 4.04E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene61244 | -0.804261 | 2.35E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene61244 | -0.804539 | 2.06E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene61244 | -0.853398 | 2.45E-61 | -1.69E-46 |
| MS.gene056504 | MS.gene61244 | -0.819361 | 1.21E-52 | -1.69E-46 |
| MS.gene056988 | MS.gene61244 | 0.827472 | 1.54E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene61244 | 0.824822 | 6.55E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene61244 | -0.803366 | 3.61E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene61244 | -0.822966 | 1.78E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene61244 | -0.826264 | 2.98E-54 | -1.69E-46 |
| MS.gene05960 | MS.gene61244 | 0.809195 | 2.13E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene61244 | -0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene61244 | -0.802643 | 5.09E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene61244 | -0.813962 | 1.96E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene61244 | -0.830937 | 2.22E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene61244 | -0.820744 | 5.83E-53 | -1.69E-46 |
| MS.gene061044 | MS.gene61244 | 0.824634 | 7.26E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21505 | MS.gene61244 | PPI |
| MS.gene015349 | MS.gene61244 | PPI |
| MS.gene09692 | MS.gene61244 | PPI |
| MS.gene54205 | MS.gene61244 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61244.t1 | MTR_4g099060 | 90.826 | 327 | 12 | 7 | 7 | 332 | 22 | 331 | 0.0 | 506 |
| MS.gene61244.t1 | MTR_4g099060 | 91.986 | 287 | 14 | 5 | 47 | 332 | 8 | 286 | 3.09e-162 | 454 |
| MS.gene61244.t1 | MTR_5g013690 | 56.725 | 342 | 113 | 8 | 4 | 332 | 16 | 335 | 8.67e-105 | 310 |
| MS.gene61244.t1 | MTR_5g013690 | 60.638 | 282 | 91 | 5 | 58 | 332 | 4 | 272 | 2.55e-97 | 289 |
| MS.gene61244.t1 | MTR_1g019250 | 31.907 | 257 | 151 | 4 | 78 | 331 | 105 | 340 | 1.71e-32 | 124 |
| MS.gene61244.t1 | MTR_4g083540 | 31.193 | 218 | 142 | 3 | 117 | 332 | 82 | 293 | 1.55e-30 | 117 |
| MS.gene61244.t1 | MTR_2g069350 | 31.349 | 252 | 133 | 6 | 118 | 332 | 118 | 366 | 1.55e-29 | 116 |
| MS.gene61244.t1 | MTR_3g117970 | 34.225 | 187 | 100 | 5 | 145 | 331 | 32 | 195 | 3.12e-25 | 100 |
| MS.gene61244.t1 | MTR_4g036485 | 28.205 | 195 | 128 | 2 | 136 | 330 | 28 | 210 | 4.34e-25 | 100 |
| MS.gene61244.t1 | MTR_2g028830 | 30.348 | 201 | 128 | 3 | 139 | 332 | 124 | 319 | 1.77e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61244.t1 | AT1G32740 | 42.183 | 339 | 139 | 9 | 5 | 331 | 18 | 311 | 1.54e-70 | 222 |
| MS.gene61244.t1 | AT1G32740 | 42.059 | 340 | 140 | 9 | 4 | 331 | 6 | 300 | 2.26e-70 | 221 |
| MS.gene61244.t1 | AT5G47050 | 45.079 | 315 | 124 | 9 | 30 | 332 | 23 | 300 | 6.33e-67 | 212 |
| MS.gene61244.t1 | AT1G32740 | 42.568 | 296 | 124 | 5 | 47 | 331 | 7 | 267 | 1.36e-66 | 210 |
| MS.gene61244.t1 | AT1G32740 | 42.568 | 296 | 124 | 5 | 47 | 331 | 7 | 267 | 1.36e-66 | 210 |
| MS.gene61244.t1 | AT4G17680 | 40.179 | 336 | 136 | 8 | 6 | 331 | 34 | 314 | 5.56e-65 | 208 |
| MS.gene61244.t1 | AT4G17680 | 43.223 | 273 | 109 | 6 | 69 | 331 | 6 | 242 | 5.74e-61 | 195 |
| MS.gene61244.t1 | AT4G17680 | 47.340 | 188 | 79 | 4 | 154 | 331 | 13 | 190 | 3.62e-46 | 155 |
| MS.gene61244.t1 | AT1G10650 | 30.743 | 296 | 173 | 7 | 51 | 332 | 6 | 283 | 9.60e-42 | 147 |
| MS.gene61244.t1 | AT1G10650 | 30.743 | 296 | 173 | 7 | 51 | 332 | 62 | 339 | 2.47e-41 | 147 |
| MS.gene61244.t1 | AT1G60610 | 29.482 | 251 | 159 | 2 | 87 | 331 | 101 | 339 | 4.66e-37 | 136 |
| MS.gene61244.t1 | AT1G60610 | 29.482 | 251 | 159 | 2 | 87 | 331 | 101 | 339 | 4.66e-37 | 136 |
| MS.gene61244.t1 | AT1G60610 | 29.482 | 251 | 159 | 2 | 87 | 331 | 101 | 339 | 4.66e-37 | 136 |
| MS.gene61244.t1 | AT1G60610 | 29.482 | 251 | 159 | 2 | 87 | 331 | 101 | 339 | 4.66e-37 | 136 |
| MS.gene61244.t1 | AT1G60610 | 29.482 | 251 | 159 | 2 | 87 | 331 | 101 | 339 | 4.66e-37 | 136 |
| MS.gene61244.t1 | AT5G45100 | 35.610 | 205 | 126 | 3 | 130 | 332 | 66 | 266 | 3.33e-30 | 116 |
| MS.gene61244.t1 | AT5G45100 | 35.610 | 205 | 126 | 3 | 130 | 332 | 93 | 293 | 4.80e-30 | 116 |
| MS.gene61244.t1 | AT1G45976 | 28.740 | 254 | 156 | 3 | 78 | 331 | 97 | 325 | 5.35e-30 | 117 |
| MS.gene61244.t1 | AT4G19700 | 35.407 | 209 | 128 | 4 | 127 | 332 | 99 | 303 | 5.48e-29 | 113 |
| MS.gene61244.t1 | AT4G35070 | 33.166 | 199 | 119 | 5 | 139 | 331 | 74 | 264 | 3.33e-28 | 110 |
| MS.gene61244.t1 | AT4G35070 | 33.166 | 199 | 119 | 5 | 139 | 331 | 19 | 209 | 6.08e-28 | 108 |
| MS.gene61244.t1 | AT3G12920 | 28.302 | 212 | 137 | 3 | 134 | 332 | 125 | 334 | 3.63e-26 | 106 |
| MS.gene61244.t1 | AT1G79110 | 29.717 | 212 | 129 | 3 | 139 | 332 | 123 | 332 | 9.86e-26 | 105 |
| MS.gene61244.t1 | AT1G79110 | 29.717 | 212 | 129 | 3 | 139 | 332 | 145 | 354 | 1.44e-25 | 105 |
| MS.gene61244.t1 | AT1G79110 | 29.767 | 215 | 128 | 4 | 139 | 332 | 145 | 357 | 2.14e-24 | 102 |
Find 86 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGCTTCCATGGTTAAC+TGG | 0.184505 | 8.2:-23095874 | None:intergenic |
| GAGAAGCTGCGGCGGCTTCT+TGG | 0.211237 | 8.2:-23095919 | None:intergenic |
| GACTTCAACGGTTGAATTCT+TGG | 0.271030 | 8.2:-23096209 | None:intergenic |
| AGAAGCTGCGGCGGCTTCTT+GGG | 0.312290 | 8.2:-23095918 | None:intergenic |
| GTGAGGAAAATATGGGAAAA+AGG | 0.313190 | 8.2:+23094239 | None:intergenic |
| CTGCGGCGGCTTCTTGGGCC+CGG | 0.322779 | 8.2:-23095913 | None:intergenic |
| GTTGTTGTTGTTGAGATTGT+TGG | 0.334601 | 8.2:-23095466 | None:intergenic |
| ACATTATTGTTTGTTGCAGC+TGG | 0.354145 | 8.2:-23095949 | None:intergenic |
| GCAACTTCCACCACTCTATC+AGG | 0.376811 | 8.2:-23096058 | None:intergenic |
| CAACAACCATCAGGAGCATT+AGG | 0.380479 | 8.2:+23095080 | MS.gene61244:CDS |
| TGCGGCGGCTTCTTGGGCCC+GGG | 0.389790 | 8.2:-23095912 | None:intergenic |
| TTACCTGGGTTTGAAGATAT+TGG | 0.390243 | 8.2:-23095577 | None:intergenic |
| CCACTTCTTTCTCTCTTAAC+CGG | 0.391453 | 8.2:-23095802 | None:intergenic |
| GTTGTTGATGATGATGATTA+TGG | 0.394349 | 8.2:-23095364 | None:intergenic |
| CTGCCATACTTGGGCTTCCA+TGG | 0.410747 | 8.2:-23095882 | None:intergenic |
| TAACCATGGAAGCCCAAGTA+TGG | 0.415275 | 8.2:+23095879 | MS.gene61244:CDS |
| GAGAAATGATTAATAACGTT+AGG | 0.416596 | 8.2:-23095299 | None:intergenic |
| GGCGAAGATGCCGGCGGAGG+CGG | 0.418507 | 8.2:+23095980 | MS.gene61244:CDS |
| TTCTTGGGAGTAAAGCAAAC+AGG | 0.420487 | 8.2:-23096193 | None:intergenic |
| GCATGAAACGCCGCCTCCGC+CGG | 0.421324 | 8.2:-23095990 | None:intergenic |
| GTGGAAGTTGCGGCGGCGCG+TGG | 0.427360 | 8.2:+23096070 | MS.gene61244:CDS |
| ACTTCAACGGTTGAATTCTT+GGG | 0.428768 | 8.2:-23096208 | None:intergenic |
| AGAAATGATTAATAACGTTA+GGG | 0.438438 | 8.2:-23095298 | None:intergenic |
| GCCTCCGCCGGCATCTTCGC+CGG | 0.446322 | 8.2:-23095978 | None:intergenic |
| ACAAGCTGAGGATGCTGAAT+CGG | 0.449705 | 8.2:+23096024 | MS.gene61244:CDS |
| CGGAGGAAGCGGTGGCGCAC+CGG | 0.460350 | 8.2:+23095783 | MS.gene61244:CDS |
| CAACAAAATGTTGTCTCTAC+TGG | 0.461189 | 8.2:+23095383 | MS.gene61244:CDS |
| CATTATTGTTTGTTGCAGCT+GGG | 0.472699 | 8.2:-23095948 | None:intergenic |
| AAGTATGGCAGGCAAAAGCC+CGG | 0.473882 | 8.2:+23095894 | MS.gene61244:CDS |
| TGAATAATTTGAGAAGGTTG+AGG | 0.479716 | 8.2:-23095329 | None:intergenic |
| ACCGGCGAAGATGCCGGCGG+AGG | 0.485312 | 8.2:+23095977 | MS.gene61244:CDS |
| CGCGGATTTAGAAGCGCGTA+CGG | 0.500807 | 8.2:+23095850 | MS.gene61244:CDS |
| ACTAAACGCGGCGGAGGAAG+CGG | 0.504819 | 8.2:+23095772 | MS.gene61244:CDS |
| GGCGTTTCATGCGGCGTGGA+AGG | 0.505182 | 8.2:+23096001 | MS.gene61244:CDS |
| AACAGCAGAAATGGACAAGA+AGG | 0.511556 | 8.2:+23095035 | MS.gene61244:intron |
| TCTCAAACCGGCGAAGATGC+CGG | 0.511840 | 8.2:+23095971 | MS.gene61244:CDS |
| TTGGGCTTCCATGGTTAACT+GGG | 0.521256 | 8.2:-23095873 | None:intergenic |
| GGCGGAGGCGGCGTTTCATG+CGG | 0.524962 | 8.2:+23095992 | MS.gene61244:CDS |
| GAAAGATGAATAATTTGAGA+AGG | 0.525108 | 8.2:-23095335 | None:intergenic |
| GCGGCGCGTGGGAAATGTAG+AGG | 0.525683 | 8.2:+23096082 | MS.gene61244:CDS |
| TTGTGTTGTTATTGTTGCAT+AGG | 0.525698 | 8.2:-23095142 | None:intergenic |
| GAATCTACGGCGGACATTGG+CGG | 0.530434 | 8.2:+23095721 | MS.gene61244:CDS |
| GTGTGAGAAGCGCGTGGCAA+CGG | 0.531560 | 8.2:+23096105 | MS.gene61244:CDS |
| CATGGAAGCCCAAGTATGGC+AGG | 0.538619 | 8.2:+23095883 | MS.gene61244:CDS |
| GGCGGACATTGGCGGAGAAG+AGG | 0.541874 | 8.2:+23095729 | MS.gene61244:CDS |
| TCTCGCAAGAGAGGAAGAGA+AGG | 0.542174 | 8.2:+23095269 | MS.gene61244:CDS |
| CAAACAATAATGTCTCAAAC+CGG | 0.545553 | 8.2:+23095959 | MS.gene61244:CDS |
| TTACAACAACAACAACCATC+AGG | 0.547918 | 8.2:+23095071 | MS.gene61244:CDS |
| AGAGAATCTACGGCGGACAT+TGG | 0.549805 | 8.2:+23095718 | MS.gene61244:CDS |
| TGGAAGTTGCGGCGGCGCGT+GGG | 0.555769 | 8.2:+23096071 | MS.gene61244:CDS |
| TAAATCCGCGTTCCTGCGAG+TGG | 0.563827 | 8.2:-23095837 | None:intergenic |
| TGATAGAGTGGTGGAAGTTG+CGG | 0.565112 | 8.2:+23096060 | MS.gene61244:CDS |
| TGAGAAGCGCGTGGCAACGG+TGG | 0.570009 | 8.2:+23096108 | MS.gene61244:CDS |
| TATTTCAGGGAGAGAATCTA+CGG | 0.574428 | 8.2:+23095708 | MS.gene61244:intron |
| GGAGCTACTAAACGCGGCGG+AGG | 0.576161 | 8.2:+23095766 | MS.gene61244:CDS |
| CCGCCGCGTTTAGTAGCTCC+CGG | 0.576958 | 8.2:-23095763 | None:intergenic |
| CTGGGCTTGTAGAGAAGCTG+CGG | 0.587298 | 8.2:-23095930 | None:intergenic |
| AATTCGCAAAAGCCACTCGC+AGG | 0.588745 | 8.2:+23095825 | MS.gene61244:CDS |
| CGGCGCGTGGGAAATGTAGA+GGG | 0.594790 | 8.2:+23096083 | MS.gene61244:CDS |
| CAAACACACAAATGCCGACA+AGG | 0.601757 | 8.2:-23096139 | None:intergenic |
| GGCTTGTAGAGAAGCTGCGG+CGG | 0.603377 | 8.2:-23095927 | None:intergenic |
| AGTATGGCAGGCAAAAGCCC+GGG | 0.608050 | 8.2:+23095895 | MS.gene61244:CDS |
| AAAAGCCACTCGCAGGAACG+CGG | 0.614760 | 8.2:+23095832 | MS.gene61244:CDS |
| AAACGCGGCGGAGGAAGCGG+TGG | 0.615069 | 8.2:+23095775 | MS.gene61244:CDS |
| GGTACAAATTCTCGCAAGAG+AGG | 0.618293 | 8.2:+23095260 | MS.gene61244:intron |
| AGGCGGCGTTTCATGCGGCG+TGG | 0.622888 | 8.2:+23095997 | MS.gene61244:CDS |
| TTATATTGATCCTGATAGAG+TGG | 0.624363 | 8.2:+23096048 | MS.gene61244:CDS |
| GATAGTCCTAATGCTCCTGA+TGG | 0.626296 | 8.2:-23095086 | None:intergenic |
| ATTTGAGAAACAATTCCTTG+TGG | 0.628054 | 8.2:-23095530 | None:intergenic |
| CTAAGAGAGAAAGACTTCAA+CGG | 0.634503 | 8.2:-23096221 | None:intergenic |
| CGGCGTGGAAGGACAAGCTG+AGG | 0.634766 | 8.2:+23096012 | MS.gene61244:CDS |
| TTCTCATCTCTATTACCACA+AGG | 0.635335 | 8.2:+23095515 | MS.gene61244:CDS |
| GAAATGATTAATAACGTTAG+GGG | 0.644550 | 8.2:-23095297 | None:intergenic |
| ACAGCAGAAATGGACAAGAA+GGG | 0.646393 | 8.2:+23095036 | MS.gene61244:intron |
| TAGAGTGGTGGAAGTTGCGG+CGG | 0.650672 | 8.2:+23096063 | MS.gene61244:CDS |
| TATTGATCCTGATAGAGTGG+TGG | 0.652755 | 8.2:+23096051 | MS.gene61244:CDS |
| CCGGTTAAGAGAGAAAGAAG+TGG | 0.657511 | 8.2:+23095802 | MS.gene61244:CDS |
| TCTTGGGAGTAAAGCAAACA+GGG | 0.657653 | 8.2:-23096192 | None:intergenic |
| AGACCAATATCTTCAAACCC+AGG | 0.667723 | 8.2:+23095574 | MS.gene61244:CDS |
| GATCATCGAATGATAAACGA+AGG | 0.668352 | 8.2:-23095406 | None:intergenic |
| TAGAGGGTGTGAGAAGCGCG+TGG | 0.693712 | 8.2:+23096099 | MS.gene61244:CDS |
| GCGTACGGCCCAGTTAACCA+TGG | 0.703157 | 8.2:+23095865 | MS.gene61244:CDS |
| CAAACCGGCGAAGATGCCGG+CGG | 0.709631 | 8.2:+23095974 | MS.gene61244:CDS |
| TTACCGGGAGCTACTAAACG+CGG | 0.757971 | 8.2:+23095760 | MS.gene61244:CDS |
| TTCAGGGAGAGAATCTACGG+CGG | 0.769377 | 8.2:+23095711 | MS.gene61244:intron |
| CCGGGAGCTACTAAACGCGG+CGG | 0.776946 | 8.2:+23095763 | MS.gene61244:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATGATAGTAAAAAA+TGG | + | chr8.2:23094542-23094561 | MS.gene61244:intron | 10.0% |
| !!! | ATTTTCGATTTATTAGAAAT+TGG | + | chr8.2:23095647-23095666 | MS.gene61244:intron | 15.0% |
| !! | AGAAATGATTAATAACGTTA+GGG | - | chr8.2:23095301-23095320 | None:intergenic | 20.0% |
| !! | CATTATAAATAAGTGAAAGT+TGG | - | chr8.2:23094519-23094538 | None:intergenic | 20.0% |
| !! | TAATGATAGTAAAAAATGGA+CGG | + | chr8.2:23094546-23094565 | MS.gene61244:intron | 20.0% |
| !! | TCATATAGAATTGTATTTGA+GGG | - | chr8.2:23094972-23094991 | None:intergenic | 20.0% |
| !! | TTATTAGAAATTGGATAGAA+AGG | + | chr8.2:23095656-23095675 | MS.gene61244:intron | 20.0% |
| !! | TTTAGAAGAAGAATATTTGA+TGG | - | chr8.2:23094886-23094905 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGCATGATTAA+TGG | + | chr8.2:23094487-23094506 | MS.gene61244:intron | 20.0% |
| ! | AACAAACTAATATTAAGCGT+TGG | - | chr8.2:23094415-23094434 | None:intergenic | 25.0% |
| ! | CATGCTAAAGAAAAAGAAAA+GGG | - | chr8.2:23094482-23094501 | None:intergenic | 25.0% |
| ! | GAAAGATGAATAATTTGAGA+AGG | - | chr8.2:23095338-23095357 | None:intergenic | 25.0% |
| ! | GAAATGATTAATAACGTTAG+GGG | - | chr8.2:23095300-23095319 | None:intergenic | 25.0% |
| ! | GAGAAATGATTAATAACGTT+AGG | - | chr8.2:23095302-23095321 | None:intergenic | 25.0% |
| ! | GTAGTTGTAAAGAAAAGAAA+AGG | + | chr8.2:23094680-23094699 | MS.gene61244:intron | 25.0% |
| ! | GTCATATAGAATTGTATTTG+AGG | - | chr8.2:23094973-23094992 | None:intergenic | 25.0% |
| ! | TAAACAACAACAACAATAAC+AGG | + | chr8.2:23094902-23094921 | MS.gene61244:intron | 25.0% |
| ! | TCATGCTAAAGAAAAAGAAA+AGG | - | chr8.2:23094483-23094502 | None:intergenic | 25.0% |
| !! | AAAAGAAAGTATGAAGTGAA+GGG | + | chr8.2:23094263-23094282 | MS.gene61244:intron | 25.0% |
| !! | ATTGTTGTAGTTGTTATTGA+TGG | - | chr8.2:23094368-23094387 | None:intergenic | 25.0% |
| !! | TAAAAGAAAGTATGAAGTGA+AGG | + | chr8.2:23094262-23094281 | MS.gene61244:intron | 25.0% |
| !! | TTGTTGTAGTTGTTATTGAT+GGG | - | chr8.2:23094367-23094386 | None:intergenic | 25.0% |
| !! | TTTGAATTTTTATGCGTGAT+GGG | + | chr8.2:23095685-23095704 | MS.gene61244:intron | 25.0% |
| !! | TTTTGAATTTTTATGCGTGA+TGG | + | chr8.2:23095684-23095703 | MS.gene61244:intron | 25.0% |
| !!! | ATTAAGCGTTGGTAAATAAA+TGG | - | chr8.2:23094404-23094423 | None:intergenic | 25.0% |
| !!! | TTAAGCGTTGGTAAATAAAT+GGG | - | chr8.2:23094403-23094422 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTTTGTTTACCT+GGG | - | chr8.2:23095594-23095613 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTTGTTTACC+TGG | - | chr8.2:23095595-23095614 | None:intergenic | 25.0% |
| ATTTGAGAAACAATTCCTTG+TGG | - | chr8.2:23095533-23095552 | None:intergenic | 30.0% | |
| CAAACAATAATGTCTCAAAC+CGG | + | chr8.2:23095959-23095978 | MS.gene61244:CDS | 30.0% | |
| GAACGAGAAAAGAGATTAAT+TGG | - | chr8.2:23095008-23095027 | None:intergenic | 30.0% | |
| GATAGTACAAACAATACCTA+TGG | + | chr8.2:23094322-23094341 | MS.gene61244:intron | 30.0% | |
| GGTATTGTTTGTACTATCTA+TGG | - | chr8.2:23094320-23094339 | None:intergenic | 30.0% | |
| TGAATAATTTGAGAAGGTTG+AGG | - | chr8.2:23095332-23095351 | None:intergenic | 30.0% | |
| TTATATTGATCCTGATAGAG+TGG | + | chr8.2:23096048-23096067 | MS.gene61244:CDS | 30.0% | |
| ! | TGTTGTAGTTGTTATTGATG+GGG | - | chr8.2:23094366-23094385 | None:intergenic | 30.0% |
| ! | TTGTGTTGTTATTGTTGCAT+AGG | - | chr8.2:23095145-23095164 | None:intergenic | 30.0% |
| !! | GTTGTTGATGATGATGATTA+TGG | - | chr8.2:23095367-23095386 | None:intergenic | 30.0% |
| AAAATGGACGGAGATTTGAA+AGG | + | chr8.2:23094558-23094577 | MS.gene61244:intron | 35.0% | |
| AAGTGTGTGTAAGTAAGGTA+AGG | + | chr8.2:23094630-23094649 | MS.gene61244:intron | 35.0% | |
| ACTTCAACGGTTGAATTCTT+GGG | - | chr8.2:23096211-23096230 | None:intergenic | 35.0% | |
| AGAAAAGGAAGAAGAGAAAG+AGG | + | chr8.2:23094695-23094714 | MS.gene61244:intron | 35.0% | |
| AGAAGAGGCAAAAACATTAC+CGG | + | chr8.2:23095744-23095763 | MS.gene61244:CDS | 35.0% | |
| AGAGAGAAGAGAAGAATAAC+AGG | + | chr8.2:23094836-23094855 | MS.gene61244:intron | 35.0% | |
| AGGTAAGGTAGAATAAGAAG+AGG | + | chr8.2:23094645-23094664 | MS.gene61244:intron | 35.0% | |
| CAACAAAATGTTGTCTCTAC+TGG | + | chr8.2:23095383-23095402 | MS.gene61244:CDS | 35.0% | |
| CAACAACAACAACAACAACA+AGG | + | chr8.2:23095476-23095495 | MS.gene61244:CDS | 35.0% | |
| CTAAGAGAGAAAGACTTCAA+CGG | - | chr8.2:23096224-23096243 | None:intergenic | 35.0% | |
| GAAAAGGAAGAAGAGAAAGA+GGG | + | chr8.2:23094696-23094715 | MS.gene61244:intron | 35.0% | |
| GATCATCGAATGATAAACGA+AGG | - | chr8.2:23095409-23095428 | None:intergenic | 35.0% | |
| TATTTCAGGGAGAGAATCTA+CGG | + | chr8.2:23095708-23095727 | MS.gene61244:intron | 35.0% | |
| TCTCTTCTCTCTATTGTTGA+GGG | - | chr8.2:23094828-23094847 | None:intergenic | 35.0% | |
| TTACAACAACAACAACCATC+AGG | + | chr8.2:23095071-23095090 | MS.gene61244:CDS | 35.0% | |
| TTACCTGGGTTTGAAGATAT+TGG | - | chr8.2:23095580-23095599 | None:intergenic | 35.0% | |
| TTCTCATCTCTATTACCACA+AGG | + | chr8.2:23095515-23095534 | MS.gene61244:CDS | 35.0% | |
| TTCTCTTCTCTCTATTGTTG+AGG | - | chr8.2:23094829-23094848 | None:intergenic | 35.0% | |
| ! | ACATTATTGTTTGTTGCAGC+TGG | - | chr8.2:23095952-23095971 | None:intergenic | 35.0% |
| ! | CATTATTGTTTGTTGCAGCT+GGG | - | chr8.2:23095951-23095970 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGTTGAGATTGT+TGG | - | chr8.2:23095469-23095488 | None:intergenic | 35.0% |
| ! | TCTTTTCCTAACAGCAGAAA+TGG | + | chr8.2:23095026-23095045 | MS.gene61244:intron | 35.0% |
| AACAGCAGAAATGGACAAGA+AGG | + | chr8.2:23095035-23095054 | MS.gene61244:intron | 40.0% | |
| AAGGGAAGGAAAGAAAGGTA+GGG | + | chr8.2:23094281-23094300 | MS.gene61244:intron | 40.0% | |
| AAGTGAAGGGAAGGAAAGAA+AGG | + | chr8.2:23094276-23094295 | MS.gene61244:intron | 40.0% | |
| ACAGCAGAAATGGACAAGAA+GGG | + | chr8.2:23095036-23095055 | MS.gene61244:intron | 40.0% | |
| AGACCAATATCTTCAAACCC+AGG | + | chr8.2:23095574-23095593 | MS.gene61244:CDS | 40.0% | |
| CCACTTCTTTCTCTCTTAAC+CGG | - | chr8.2:23095805-23095824 | None:intergenic | 40.0% | |
| GAAGAGGCAAAAACATTACC+GGG | + | chr8.2:23095745-23095764 | MS.gene61244:CDS | 40.0% | |
| GACTTCAACGGTTGAATTCT+TGG | - | chr8.2:23096212-23096231 | None:intergenic | 40.0% | |
| GGTGTAAGTGTGTGTAAGTA+AGG | + | chr8.2:23094625-23094644 | MS.gene61244:intron | 40.0% | |
| TATTGATCCTGATAGAGTGG+TGG | + | chr8.2:23096051-23096070 | MS.gene61244:CDS | 40.0% | |
| TCTTGGGAGTAAAGCAAACA+GGG | - | chr8.2:23096195-23096214 | None:intergenic | 40.0% | |
| TCTTGTCCATTTCTGCTGTT+AGG | - | chr8.2:23095035-23095054 | None:intergenic | 40.0% | |
| TTCTCTCTATTGTTGAGGGA+GGG | - | chr8.2:23094824-23094843 | None:intergenic | 40.0% | |
| TTCTTGGGAGTAAAGCAAAC+AGG | - | chr8.2:23096196-23096215 | None:intergenic | 40.0% | |
| ! | GAAAGTATGAAGTGAAGGGA+AGG | + | chr8.2:23094267-23094286 | MS.gene61244:intron | 40.0% |
| ! | GTAGTTGTTATTGATGGGGT+AGG | - | chr8.2:23094362-23094381 | None:intergenic | 40.0% |
| !! | TATGCGTGATGGGTATTTCA+GGG | + | chr8.2:23095695-23095714 | MS.gene61244:intron | 40.0% |
| !! | TTATGCGTGATGGGTATTTC+AGG | + | chr8.2:23095694-23095713 | MS.gene61244:intron | 40.0% |
| ACAAGCTGAGGATGCTGAAT+CGG | + | chr8.2:23096024-23096043 | MS.gene61244:CDS | 45.0% | |
| AGGGTATGTGTGCAATTGCA+TGG | - | chr8.2:23094463-23094482 | None:intergenic | 45.0% | |
| ATGTCTCAACAATTCACCGC+AGG | + | chr8.2:23095239-23095258 | MS.gene61244:intron | 45.0% | |
| ATGTGTGCAATTGCATGGGA+TGG | - | chr8.2:23094458-23094477 | None:intergenic | 45.0% | |
| CAAACACACAAATGCCGACA+AGG | - | chr8.2:23096142-23096161 | None:intergenic | 45.0% | |
| CCGGTTAAGAGAGAAAGAAG+TGG | + | chr8.2:23095802-23095821 | MS.gene61244:CDS | 45.0% | |
| CTTCTCTCTATTGTTGAGGG+AGG | - | chr8.2:23094825-23094844 | None:intergenic | 45.0% | |
| CTTGCGAGAATTTGTACCTG+CGG | - | chr8.2:23095258-23095277 | None:intergenic | 45.0% | |
| GAAGGGAAGGAAAGAAAGGT+AGG | + | chr8.2:23094280-23094299 | MS.gene61244:intron | 45.0% | |
| GATAGTCCTAATGCTCCTGA+TGG | - | chr8.2:23095089-23095108 | None:intergenic | 45.0% | |
| GGACGGAGATTTGAAAGGAA+AGG | + | chr8.2:23094563-23094582 | MS.gene61244:intron | 45.0% | |
| GGGTATGTGTGCAATTGCAT+GGG | - | chr8.2:23094462-23094481 | None:intergenic | 45.0% | |
| GGTACAAATTCTCGCAAGAG+AGG | + | chr8.2:23095260-23095279 | MS.gene61244:intron | 45.0% | |
| TAACCATGGAAGCCCAAGTA+TGG | + | chr8.2:23095879-23095898 | MS.gene61244:CDS | 45.0% | |
| TGTGTGCAATTGCATGGGAT+GGG | - | chr8.2:23094457-23094476 | None:intergenic | 45.0% | |
| TTATTGATGGGGTAGGATGC+AGG | - | chr8.2:23094355-23094374 | None:intergenic | 45.0% | |
| TTGGGCTTCCATGGTTAACT+GGG | - | chr8.2:23095876-23095895 | None:intergenic | 45.0% | |
| ! | GCAGAATAAGGTGTCTCTCT+TGG | + | chr8.2:23094724-23094743 | MS.gene61244:intron | 45.0% |
| ! | TGATAGAGTGGTGGAAGTTG+CGG | + | chr8.2:23096060-23096079 | MS.gene61244:CDS | 45.0% |
| !! | CAACAACCATCAGGAGCATT+AGG | + | chr8.2:23095080-23095099 | MS.gene61244:CDS | 45.0% |
| !! | CGGTGGTTGTTTTACCTTGT+CGG | + | chr8.2:23096125-23096144 | MS.gene61244:CDS | 45.0% |
| !! | AATAATAATAGTATATTATT+TGG | + | chr8.2:23094604-23094623 | MS.gene61244:intron | 5.0% |
| AAGAGGGAGCGAGCAGAATA+AGG | + | chr8.2:23094712-23094731 | MS.gene61244:intron | 50.0% | |
| AAGTATGGCAGGCAAAAGCC+CGG | + | chr8.2:23095894-23095913 | MS.gene61244:CDS | 50.0% | |
| AATTCGCAAAAGCCACTCGC+AGG | + | chr8.2:23095825-23095844 | MS.gene61244:CDS | 50.0% | |
| AGAGAATCTACGGCGGACAT+TGG | + | chr8.2:23095718-23095737 | MS.gene61244:CDS | 50.0% | |
| CTCTATTGTTGAGGGAGGGA+GGG | - | chr8.2:23094820-23094839 | None:intergenic | 50.0% | |
| CTTGGGCTTCCATGGTTAAC+TGG | - | chr8.2:23095877-23095896 | None:intergenic | 50.0% | |
| GCAACTTCCACCACTCTATC+AGG | - | chr8.2:23096061-23096080 | None:intergenic | 50.0% | |
| GGAAAGAAAGGTAGGGAGAG+AGG | + | chr8.2:23094288-23094307 | MS.gene61244:intron | 50.0% | |
| TCTCGCAAGAGAGGAAGAGA+AGG | + | chr8.2:23095269-23095288 | MS.gene61244:CDS | 50.0% | |
| TCTCTATTGTTGAGGGAGGG+AGG | - | chr8.2:23094821-23094840 | None:intergenic | 50.0% | |
| TTACCGGGAGCTACTAAACG+CGG | + | chr8.2:23095760-23095779 | MS.gene61244:CDS | 50.0% | |
| TTCAGGGAGAGAATCTACGG+CGG | + | chr8.2:23095711-23095730 | MS.gene61244:intron | 50.0% | |
| ! | AAAGGTAGGGAGAGAGGCAT+GGG | + | chr8.2:23094294-23094313 | MS.gene61244:intron | 50.0% |
| ! | GGATGCAGGTTTTCTGCCAT+AGG | - | chr8.2:23094341-23094360 | None:intergenic | 50.0% |
| ! | GGCTTTTGCCTGCCATACTT+GGG | - | chr8.2:23095894-23095913 | None:intergenic | 50.0% |
| AAAAGCCACTCGCAGGAACG+CGG | + | chr8.2:23095832-23095851 | MS.gene61244:CDS | 55.0% | |
| AGTATGGCAGGCAAAAGCCC+GGG | + | chr8.2:23095895-23095914 | MS.gene61244:CDS | 55.0% | |
| CATGGAAGCCCAAGTATGGC+AGG | + | chr8.2:23095883-23095902 | MS.gene61244:CDS | 55.0% | |
| CTGCCATACTTGGGCTTCCA+TGG | - | chr8.2:23095885-23095904 | None:intergenic | 55.0% | |
| CTGGGCTTGTAGAGAAGCTG+CGG | - | chr8.2:23095933-23095952 | None:intergenic | 55.0% | |
| GAAAGGTAGGGAGAGAGGCA+TGG | + | chr8.2:23094293-23094312 | MS.gene61244:intron | 55.0% | |
| GAATCTACGGCGGACATTGG+CGG | + | chr8.2:23095721-23095740 | MS.gene61244:CDS | 55.0% | |
| TAAATCCGCGTTCCTGCGAG+TGG | - | chr8.2:23095840-23095859 | None:intergenic | 55.0% | |
| TCTCAAACCGGCGAAGATGC+CGG | + | chr8.2:23095971-23095990 | MS.gene61244:CDS | 55.0% | |
| ! | CGCGGATTTAGAAGCGCGTA+CGG | + | chr8.2:23095850-23095869 | MS.gene61244:CDS | 55.0% |
| ! | GGGCTTTTGCCTGCCATACT+TGG | - | chr8.2:23095895-23095914 | None:intergenic | 55.0% |
| ! | TAGAGTGGTGGAAGTTGCGG+CGG | + | chr8.2:23096063-23096082 | MS.gene61244:CDS | 55.0% |
| ACTAAACGCGGCGGAGGAAG+CGG | + | chr8.2:23095772-23095791 | MS.gene61244:CDS | 60.0% | |
| AGAAGCTGCGGCGGCTTCTT+GGG | - | chr8.2:23095921-23095940 | None:intergenic | 60.0% | |
| CGGCGCGTGGGAAATGTAGA+GGG | + | chr8.2:23096083-23096102 | MS.gene61244:CDS | 60.0% | |
| GCGTACGGCCCAGTTAACCA+TGG | + | chr8.2:23095865-23095884 | MS.gene61244:CDS | 60.0% | |
| GGCTTGTAGAGAAGCTGCGG+CGG | - | chr8.2:23095930-23095949 | None:intergenic | 60.0% | |
| ! | GTGTGAGAAGCGCGTGGCAA+CGG | + | chr8.2:23096105-23096124 | MS.gene61244:CDS | 60.0% |
| ! | TAGAGGGTGTGAGAAGCGCG+TGG | + | chr8.2:23096099-23096118 | MS.gene61244:CDS | 60.0% |
| CAAACCGGCGAAGATGCCGG+CGG | + | chr8.2:23095974-23095993 | MS.gene61244:CDS | 65.0% | |
| CCGCCGCGTTTAGTAGCTCC+CGG | - | chr8.2:23095766-23095785 | None:intergenic | 65.0% | |
| CCGGGAGCTACTAAACGCGG+CGG | + | chr8.2:23095763-23095782 | MS.gene61244:CDS | 65.0% | |
| CGGCGTGGAAGGACAAGCTG+AGG | + | chr8.2:23096012-23096031 | MS.gene61244:CDS | 65.0% | |
| GAGAAGCTGCGGCGGCTTCT+TGG | - | chr8.2:23095922-23095941 | None:intergenic | 65.0% | |
| GCGGCGCGTGGGAAATGTAG+AGG | + | chr8.2:23096082-23096101 | MS.gene61244:CDS | 65.0% | |
| GGAGCTACTAAACGCGGCGG+AGG | + | chr8.2:23095766-23095785 | MS.gene61244:CDS | 65.0% | |
| GGCGGACATTGGCGGAGAAG+AGG | + | chr8.2:23095729-23095748 | MS.gene61244:CDS | 65.0% | |
| GGCGTTTCATGCGGCGTGGA+AGG | + | chr8.2:23096001-23096020 | MS.gene61244:CDS | 65.0% | |
| ! | TGAGAAGCGCGTGGCAACGG+TGG | + | chr8.2:23096108-23096127 | MS.gene61244:CDS | 65.0% |
| AAACGCGGCGGAGGAAGCGG+TGG | + | chr8.2:23095775-23095794 | MS.gene61244:CDS | 70.0% | |
| AGGCGGCGTTTCATGCGGCG+TGG | + | chr8.2:23095997-23096016 | MS.gene61244:CDS | 70.0% | |
| GCATGAAACGCCGCCTCCGC+CGG | - | chr8.2:23095993-23096012 | None:intergenic | 70.0% | |
| GGCGGAGGCGGCGTTTCATG+CGG | + | chr8.2:23095992-23096011 | MS.gene61244:CDS | 70.0% | |
| TGGAAGTTGCGGCGGCGCGT+GGG | + | chr8.2:23096071-23096090 | MS.gene61244:CDS | 70.0% | |
| ACCGGCGAAGATGCCGGCGG+AGG | + | chr8.2:23095977-23095996 | MS.gene61244:CDS | 75.0% | |
| CGGAGGAAGCGGTGGCGCAC+CGG | + | chr8.2:23095783-23095802 | MS.gene61244:CDS | 75.0% | |
| CTGCGGCGGCTTCTTGGGCC+CGG | - | chr8.2:23095916-23095935 | None:intergenic | 75.0% | |
| GCCTCCGCCGGCATCTTCGC+CGG | - | chr8.2:23095981-23096000 | None:intergenic | 75.0% | |
| GGCGAAGATGCCGGCGGAGG+CGG | + | chr8.2:23095980-23095999 | MS.gene61244:CDS | 75.0% | |
| GTGGAAGTTGCGGCGGCGCG+TGG | + | chr8.2:23096070-23096089 | MS.gene61244:CDS | 75.0% | |
| TGCGGCGGCTTCTTGGGCCC+GGG | - | chr8.2:23095915-23095934 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 23094250 | 23096243 | 23094250 | ID=MS.gene61244 |
| chr8.2 | mRNA | 23094250 | 23096243 | 23094250 | ID=MS.gene61244.t1;Parent=MS.gene61244 |
| chr8.2 | exon | 23094250 | 23094260 | 23094250 | ID=MS.gene61244.t1.exon1;Parent=MS.gene61244.t1 |
| chr8.2 | CDS | 23094250 | 23094260 | 23094250 | ID=cds.MS.gene61244.t1;Parent=MS.gene61244.t1 |
| chr8.2 | exon | 23095040 | 23095164 | 23095040 | ID=MS.gene61244.t1.exon2;Parent=MS.gene61244.t1 |
| chr8.2 | CDS | 23095040 | 23095164 | 23095040 | ID=cds.MS.gene61244.t1;Parent=MS.gene61244.t1 |
| chr8.2 | exon | 23095261 | 23095595 | 23095261 | ID=MS.gene61244.t1.exon3;Parent=MS.gene61244.t1 |
| chr8.2 | CDS | 23095261 | 23095595 | 23095261 | ID=cds.MS.gene61244.t1;Parent=MS.gene61244.t1 |
| chr8.2 | exon | 23095716 | 23096243 | 23095716 | ID=MS.gene61244.t1.exon4;Parent=MS.gene61244.t1 |
| chr8.2 | CDS | 23095716 | 23096243 | 23095716 | ID=cds.MS.gene61244.t1;Parent=MS.gene61244.t1 |
| Gene Sequence |
| Protein sequence |
