Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72389.t1 | KEH31582.1 | 95 | 201 | 9 | 1 | 2 | 202 | 87 | 286 | 1.20E-94 | 355.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72389.t1 | Q9FHE4 | 34.5 | 200 | 125 | 2 | 5 | 202 | 98 | 293 | 1.4e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72389.t1 | A0A072UR88 | 95.0 | 201 | 9 | 1 | 2 | 202 | 132 | 331 | 8.8e-95 | 355.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene72389 | -0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene051973 | MS.gene72389 | 0.802208 | 6.26E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene72389 | 0.81928 | 1.26E-52 | -1.69E-46 |
| MS.gene054344 | MS.gene72389 | -0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene72389 | -0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene72389 | -0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene059303 | MS.gene72389 | -0.807626 | 4.61E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21505 | MS.gene72389 | PPI |
| MS.gene015349 | MS.gene72389 | PPI |
| MS.gene09692 | MS.gene72389 | PPI |
| MS.gene54205 | MS.gene72389 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72389.t1 | MTR_4g099060 | 94.554 | 202 | 10 | 1 | 1 | 202 | 86 | 286 | 5.42e-122 | 347 |
| MS.gene72389.t1 | MTR_4g099060 | 94.554 | 202 | 10 | 1 | 1 | 202 | 131 | 331 | 1.54e-121 | 347 |
| MS.gene72389.t1 | MTR_5g013690 | 64.851 | 202 | 65 | 3 | 5 | 202 | 73 | 272 | 2.10e-87 | 258 |
| MS.gene72389.t1 | MTR_5g013690 | 64.851 | 202 | 65 | 3 | 5 | 202 | 136 | 335 | 6.06e-87 | 259 |
| MS.gene72389.t1 | MTR_1g019250 | 33.673 | 196 | 125 | 2 | 9 | 201 | 147 | 340 | 2.81e-31 | 116 |
| MS.gene72389.t1 | MTR_4g083540 | 31.980 | 197 | 126 | 3 | 8 | 202 | 103 | 293 | 2.69e-30 | 113 |
| MS.gene72389.t1 | MTR_3g117970 | 33.000 | 200 | 111 | 5 | 2 | 201 | 19 | 195 | 2.24e-26 | 100 |
| MS.gene72389.t1 | MTR_4g036485 | 29.064 | 203 | 122 | 4 | 2 | 200 | 26 | 210 | 1.75e-25 | 98.6 |
| MS.gene72389.t1 | MTR_2g069350 | 29.787 | 235 | 126 | 5 | 5 | 202 | 134 | 366 | 2.00e-25 | 101 |
| MS.gene72389.t1 | MTR_2g028830 | 30.348 | 201 | 128 | 3 | 9 | 202 | 124 | 319 | 1.45e-24 | 98.6 |
| MS.gene72389.t1 | MTR_5g034280 | 33.721 | 86 | 56 | 1 | 26 | 111 | 14 | 98 | 9.74e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72389.t1 | AT5G47050 | 52.133 | 211 | 84 | 3 | 1 | 202 | 98 | 300 | 2.22e-64 | 201 |
| MS.gene72389.t1 | AT1G32740 | 48.500 | 200 | 91 | 2 | 9 | 201 | 73 | 267 | 2.15e-58 | 184 |
| MS.gene72389.t1 | AT1G32740 | 48.500 | 200 | 91 | 2 | 9 | 201 | 73 | 267 | 2.15e-58 | 184 |
| MS.gene72389.t1 | AT1G32740 | 48.500 | 200 | 91 | 2 | 9 | 201 | 106 | 300 | 6.48e-58 | 184 |
| MS.gene72389.t1 | AT1G32740 | 48.500 | 200 | 91 | 2 | 9 | 201 | 117 | 311 | 6.77e-58 | 185 |
| MS.gene72389.t1 | AT4G17680 | 48.000 | 200 | 98 | 3 | 5 | 201 | 46 | 242 | 2.87e-56 | 178 |
| MS.gene72389.t1 | AT4G17680 | 48.000 | 200 | 98 | 3 | 5 | 201 | 118 | 314 | 1.47e-55 | 179 |
| MS.gene72389.t1 | AT4G17680 | 47.340 | 188 | 79 | 4 | 24 | 201 | 13 | 190 | 1.53e-47 | 154 |
| MS.gene72389.t1 | AT1G10650 | 32.692 | 208 | 128 | 4 | 3 | 202 | 80 | 283 | 4.90e-37 | 130 |
| MS.gene72389.t1 | AT1G10650 | 32.692 | 208 | 128 | 4 | 3 | 202 | 136 | 339 | 2.11e-36 | 130 |
| MS.gene72389.t1 | AT1G60610 | 30.244 | 205 | 137 | 1 | 3 | 201 | 135 | 339 | 2.87e-33 | 122 |
| MS.gene72389.t1 | AT1G60610 | 30.244 | 205 | 137 | 1 | 3 | 201 | 135 | 339 | 2.87e-33 | 122 |
| MS.gene72389.t1 | AT1G60610 | 30.244 | 205 | 137 | 1 | 3 | 201 | 135 | 339 | 2.87e-33 | 122 |
| MS.gene72389.t1 | AT1G60610 | 30.244 | 205 | 137 | 1 | 3 | 201 | 135 | 339 | 2.87e-33 | 122 |
| MS.gene72389.t1 | AT1G60610 | 30.244 | 205 | 137 | 1 | 3 | 201 | 135 | 339 | 2.87e-33 | 122 |
| MS.gene72389.t1 | AT5G45100 | 35.500 | 200 | 123 | 3 | 5 | 202 | 71 | 266 | 1.17e-30 | 113 |
| MS.gene72389.t1 | AT5G45100 | 35.500 | 200 | 123 | 3 | 5 | 202 | 98 | 293 | 2.64e-30 | 113 |
| MS.gene72389.t1 | AT4G35070 | 33.166 | 199 | 119 | 5 | 9 | 201 | 19 | 209 | 1.08e-29 | 109 |
| MS.gene72389.t1 | AT4G35070 | 33.500 | 200 | 117 | 6 | 9 | 201 | 74 | 264 | 5.45e-29 | 108 |
| MS.gene72389.t1 | AT1G45976 | 30.570 | 193 | 128 | 2 | 9 | 201 | 139 | 325 | 9.51e-29 | 109 |
| MS.gene72389.t1 | AT4G19700 | 34.826 | 201 | 124 | 4 | 5 | 202 | 107 | 303 | 1.17e-28 | 108 |
| MS.gene72389.t1 | AT1G79110 | 29.717 | 212 | 129 | 3 | 9 | 202 | 123 | 332 | 4.56e-27 | 105 |
| MS.gene72389.t1 | AT1G79110 | 29.717 | 212 | 129 | 3 | 9 | 202 | 145 | 354 | 6.97e-27 | 105 |
| MS.gene72389.t1 | AT3G12920 | 27.962 | 211 | 137 | 3 | 5 | 202 | 126 | 334 | 1.97e-26 | 103 |
| MS.gene72389.t1 | AT1G79110 | 29.767 | 215 | 128 | 4 | 9 | 202 | 145 | 357 | 1.61e-25 | 101 |
Find 67 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGCTTCCATGGTTAAC+TGG | 0.184505 | 8.3:-21616994 | None:intergenic |
| GAGAAGCTGCGGCGGCTTCT+TGG | 0.211237 | 8.3:-21617039 | None:intergenic |
| GACTTCAACGGTTGAATTCT+TGG | 0.271030 | 8.3:-21617329 | None:intergenic |
| AGAAGCTGCGGCGGCTTCTT+GGG | 0.312290 | 8.3:-21617038 | None:intergenic |
| CTGCGGCGGCTTCTTGGGCC+CGG | 0.322779 | 8.3:-21617033 | None:intergenic |
| ACATTATTGTTTGTTGCAGC+TGG | 0.354145 | 8.3:-21617069 | None:intergenic |
| GCAACTTCCACCACTCTATC+AGG | 0.376811 | 8.3:-21617178 | None:intergenic |
| TGCGGCGGCTTCTTGGGCCC+GGG | 0.389790 | 8.3:-21617032 | None:intergenic |
| TTACCTGGGTTTGAAGATAT+TGG | 0.390243 | 8.3:-21616697 | None:intergenic |
| CCACTTCTTTCTCTCTTAAC+CGG | 0.391453 | 8.3:-21616922 | None:intergenic |
| CTGCCATACTTGGGCTTCCA+TGG | 0.410747 | 8.3:-21617002 | None:intergenic |
| TAACCATGGAAGCCCAAGTA+TGG | 0.415275 | 8.3:+21616999 | MS.gene72389:CDS |
| GGCGAAGATGCCGGCGGAGG+CGG | 0.418507 | 8.3:+21617100 | MS.gene72389:CDS |
| TTCTTGGGAGTAAAGCAAAC+AGG | 0.420487 | 8.3:-21617313 | None:intergenic |
| GCATGAAACGCCGCCTCCGC+CGG | 0.421324 | 8.3:-21617110 | None:intergenic |
| GTGGAAGTTGCGGCGGCGCG+TGG | 0.427360 | 8.3:+21617190 | MS.gene72389:CDS |
| ACTTCAACGGTTGAATTCTT+GGG | 0.428768 | 8.3:-21617328 | None:intergenic |
| GCCTCCGCCGGCATCTTCGC+CGG | 0.446322 | 8.3:-21617098 | None:intergenic |
| ACAAGCTGAGGATGCTGAAT+CGG | 0.449705 | 8.3:+21617144 | MS.gene72389:CDS |
| CGGAGGAAGCGGTGGCGCAC+CGG | 0.460350 | 8.3:+21616903 | MS.gene72389:CDS |
| CATTATTGTTTGTTGCAGCT+GGG | 0.472699 | 8.3:-21617068 | None:intergenic |
| AAGTATGGCAGGCAAAAGCC+CGG | 0.473882 | 8.3:+21617014 | MS.gene72389:CDS |
| ACCGGCGAAGATGCCGGCGG+AGG | 0.485312 | 8.3:+21617097 | MS.gene72389:CDS |
| CGCGGATTTAGAAGCGCGTA+CGG | 0.500807 | 8.3:+21616970 | MS.gene72389:CDS |
| ACTAAACGCGGCGGAGGAAG+CGG | 0.504819 | 8.3:+21616892 | MS.gene72389:CDS |
| GGCGTTTCATGCGGCGTGGA+AGG | 0.505182 | 8.3:+21617121 | MS.gene72389:CDS |
| TCTCAAACCGGCGAAGATGC+CGG | 0.511840 | 8.3:+21617091 | MS.gene72389:CDS |
| TTGGGCTTCCATGGTTAACT+GGG | 0.521256 | 8.3:-21616993 | None:intergenic |
| GGCGGAGGCGGCGTTTCATG+CGG | 0.524962 | 8.3:+21617112 | MS.gene72389:CDS |
| GCGGCGCGTGGGAAATGTAG+AGG | 0.525683 | 8.3:+21617202 | MS.gene72389:CDS |
| GAATCTACGGCGGACATTGG+CGG | 0.530434 | 8.3:+21616841 | MS.gene72389:CDS |
| GTGTGAGAAGCGCGTGGCAA+CGG | 0.531560 | 8.3:+21617225 | MS.gene72389:CDS |
| CATGGAAGCCCAAGTATGGC+AGG | 0.538619 | 8.3:+21617003 | MS.gene72389:CDS |
| GGCGGACATTGGCGGAGAAG+AGG | 0.541874 | 8.3:+21616849 | MS.gene72389:CDS |
| CAAACAATAATGTCTCAAAC+CGG | 0.545553 | 8.3:+21617079 | MS.gene72389:CDS |
| AGAGAATCTACGGCGGACAT+TGG | 0.549805 | 8.3:+21616838 | MS.gene72389:CDS |
| TGGAAGTTGCGGCGGCGCGT+GGG | 0.555769 | 8.3:+21617191 | MS.gene72389:CDS |
| TAAATCCGCGTTCCTGCGAG+TGG | 0.563827 | 8.3:-21616957 | None:intergenic |
| TGATAGAGTGGTGGAAGTTG+CGG | 0.565112 | 8.3:+21617180 | MS.gene72389:CDS |
| TGAGAAGCGCGTGGCAACGG+TGG | 0.570009 | 8.3:+21617228 | MS.gene72389:CDS |
| TATTTCAGGGAGAGAATCTA+CGG | 0.574428 | 8.3:+21616828 | MS.gene72389:intron |
| GGAGCTACTAAACGCGGCGG+AGG | 0.576161 | 8.3:+21616886 | MS.gene72389:CDS |
| CCGCCGCGTTTAGTAGCTCC+CGG | 0.576958 | 8.3:-21616883 | None:intergenic |
| CTGGGCTTGTAGAGAAGCTG+CGG | 0.587298 | 8.3:-21617050 | None:intergenic |
| AATTCGCAAAAGCCACTCGC+AGG | 0.588745 | 8.3:+21616945 | MS.gene72389:CDS |
| CGGCGCGTGGGAAATGTAGA+GGG | 0.594790 | 8.3:+21617203 | MS.gene72389:CDS |
| CAAACACACAAATGCCGACA+AGG | 0.601757 | 8.3:-21617259 | None:intergenic |
| CTAAGAGAGAAAGACTTCAA+CGG | 0.603304 | 8.3:-21617341 | None:intergenic |
| GGCTTGTAGAGAAGCTGCGG+CGG | 0.603377 | 8.3:-21617047 | None:intergenic |
| AGTATGGCAGGCAAAAGCCC+GGG | 0.608050 | 8.3:+21617015 | MS.gene72389:CDS |
| AAAAGCCACTCGCAGGAACG+CGG | 0.614760 | 8.3:+21616952 | MS.gene72389:CDS |
| AAACGCGGCGGAGGAAGCGG+TGG | 0.615069 | 8.3:+21616895 | MS.gene72389:CDS |
| AGGCGGCGTTTCATGCGGCG+TGG | 0.622888 | 8.3:+21617117 | MS.gene72389:CDS |
| TTATATTGATCCTGATAGAG+TGG | 0.624363 | 8.3:+21617168 | MS.gene72389:CDS |
| CGGCGTGGAAGGACAAGCTG+AGG | 0.634766 | 8.3:+21617132 | MS.gene72389:CDS |
| ATGTCTCAACAACTCACCGC+AGG | 0.640949 | 8.3:+21616362 | MS.gene72389:CDS |
| TAGAGTGGTGGAAGTTGCGG+CGG | 0.650672 | 8.3:+21617183 | MS.gene72389:CDS |
| TATTGATCCTGATAGAGTGG+TGG | 0.652755 | 8.3:+21617171 | MS.gene72389:CDS |
| CCGGTTAAGAGAGAAAGAAG+TGG | 0.657511 | 8.3:+21616922 | MS.gene72389:CDS |
| TCTTGGGAGTAAAGCAAACA+GGG | 0.657653 | 8.3:-21617312 | None:intergenic |
| AGACCAATATCTTCAAACCC+AGG | 0.667723 | 8.3:+21616694 | MS.gene72389:CDS |
| TAGAGGGTGTGAGAAGCGCG+TGG | 0.693712 | 8.3:+21617219 | MS.gene72389:CDS |
| GCGTACGGCCCAGTTAACCA+TGG | 0.703157 | 8.3:+21616985 | MS.gene72389:CDS |
| CAAACCGGCGAAGATGCCGG+CGG | 0.709631 | 8.3:+21617094 | MS.gene72389:CDS |
| TTACCGGGAGCTACTAAACG+CGG | 0.757971 | 8.3:+21616880 | MS.gene72389:CDS |
| TTCAGGGAGAGAATCTACGG+CGG | 0.769377 | 8.3:+21616831 | MS.gene72389:intron |
| CCGGGAGCTACTAAACGCGG+CGG | 0.776946 | 8.3:+21616883 | MS.gene72389:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCGATTTATTAGAAAT+TGG | + | chr8.3:21616767-21616786 | MS.gene72389:intron | 15.0% |
| !! | AGAAATGATTAATAACGTTA+GGG | - | chr8.3:21616424-21616443 | None:intergenic | 20.0% |
| !! | TTATTAGAAATTGGATAGAA+AGG | + | chr8.3:21616776-21616795 | MS.gene72389:intron | 20.0% |
| ! | GAAAGATGAATAATTTGAGA+AGG | - | chr8.3:21616461-21616480 | None:intergenic | 25.0% |
| ! | GAGAAATGATTAATAACGTT+AGG | - | chr8.3:21616425-21616444 | None:intergenic | 25.0% |
| !! | TTTGAATTTTTATGCGTGAT+GGG | + | chr8.3:21616805-21616824 | MS.gene72389:intron | 25.0% |
| !! | TTTTGAATTTTTATGCGTGA+TGG | + | chr8.3:21616804-21616823 | MS.gene72389:intron | 25.0% |
| !!! | TTGTTTTGTTTTGTTTACCT+GGG | - | chr8.3:21616714-21616733 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTTGTTTACC+TGG | - | chr8.3:21616715-21616734 | None:intergenic | 25.0% |
| ATTTGAGAAACAATTCCTTG+TGG | - | chr8.3:21616653-21616672 | None:intergenic | 30.0% | |
| CAAACAATAATGTCTCAAAC+CGG | + | chr8.3:21617079-21617098 | MS.gene72389:CDS | 30.0% | |
| TGAATAATTTGAGAAGGTTG+AGG | - | chr8.3:21616455-21616474 | None:intergenic | 30.0% | |
| TTATATTGATCCTGATAGAG+TGG | + | chr8.3:21617168-21617187 | MS.gene72389:CDS | 30.0% | |
| !! | GTTGTTGATGATGATGATTA+TGG | - | chr8.3:21616490-21616509 | None:intergenic | 30.0% |
| ACTTCAACGGTTGAATTCTT+GGG | - | chr8.3:21617331-21617350 | None:intergenic | 35.0% | |
| AGAAGAGGCAAAAACATTAC+CGG | + | chr8.3:21616864-21616883 | MS.gene72389:CDS | 35.0% | |
| CAACAAAATGTTGTCTCTAC+TGG | + | chr8.3:21616506-21616525 | MS.gene72389:intron | 35.0% | |
| CTAAGAGAGAAAGACTTCAA+CGG | - | chr8.3:21617344-21617363 | None:intergenic | 35.0% | |
| GATCATCGAATGATAAACGA+AGG | - | chr8.3:21616532-21616551 | None:intergenic | 35.0% | |
| TATTTCAGGGAGAGAATCTA+CGG | + | chr8.3:21616828-21616847 | MS.gene72389:intron | 35.0% | |
| TCTCAACAACAACAACAACA+AGG | + | chr8.3:21616596-21616615 | MS.gene72389:intron | 35.0% | |
| TTACCTGGGTTTGAAGATAT+TGG | - | chr8.3:21616700-21616719 | None:intergenic | 35.0% | |
| TTCTCATCTCTATTACCACA+AGG | + | chr8.3:21616635-21616654 | MS.gene72389:intron | 35.0% | |
| ! | ACATTATTGTTTGTTGCAGC+TGG | - | chr8.3:21617072-21617091 | None:intergenic | 35.0% |
| ! | CATTATTGTTTGTTGCAGCT+GGG | - | chr8.3:21617071-21617090 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGTTGAGATTGT+TGG | - | chr8.3:21616592-21616611 | None:intergenic | 35.0% |
| AGACCAATATCTTCAAACCC+AGG | + | chr8.3:21616694-21616713 | MS.gene72389:CDS | 40.0% | |
| CCACTTCTTTCTCTCTTAAC+CGG | - | chr8.3:21616925-21616944 | None:intergenic | 40.0% | |
| GAAGAGGCAAAAACATTACC+GGG | + | chr8.3:21616865-21616884 | MS.gene72389:CDS | 40.0% | |
| GACTTCAACGGTTGAATTCT+TGG | - | chr8.3:21617332-21617351 | None:intergenic | 40.0% | |
| TATTGATCCTGATAGAGTGG+TGG | + | chr8.3:21617171-21617190 | MS.gene72389:CDS | 40.0% | |
| TCTTGGGAGTAAAGCAAACA+GGG | - | chr8.3:21617315-21617334 | None:intergenic | 40.0% | |
| TTCTTGGGAGTAAAGCAAAC+AGG | - | chr8.3:21617316-21617335 | None:intergenic | 40.0% | |
| !! | TATGCGTGATGGGTATTTCA+GGG | + | chr8.3:21616815-21616834 | MS.gene72389:intron | 40.0% |
| !! | TTATGCGTGATGGGTATTTC+AGG | + | chr8.3:21616814-21616833 | MS.gene72389:intron | 40.0% |
| ACAAGCTGAGGATGCTGAAT+CGG | + | chr8.3:21617144-21617163 | MS.gene72389:CDS | 45.0% | |
| CAAACACACAAATGCCGACA+AGG | - | chr8.3:21617262-21617281 | None:intergenic | 45.0% | |
| CCGGTTAAGAGAGAAAGAAG+TGG | + | chr8.3:21616922-21616941 | MS.gene72389:CDS | 45.0% | |
| CTTGCGAGAATTTGTACCTG+CGG | - | chr8.3:21616381-21616400 | None:intergenic | 45.0% | |
| GGTACAAATTCTCGCAAGAG+AGG | + | chr8.3:21616383-21616402 | MS.gene72389:intron | 45.0% | |
| TAACCATGGAAGCCCAAGTA+TGG | + | chr8.3:21616999-21617018 | MS.gene72389:CDS | 45.0% | |
| TTGGGCTTCCATGGTTAACT+GGG | - | chr8.3:21616996-21617015 | None:intergenic | 45.0% | |
| ! | TGATAGAGTGGTGGAAGTTG+CGG | + | chr8.3:21617180-21617199 | MS.gene72389:CDS | 45.0% |
| !! | CGGTGGTTGTTTTACCTTGT+CGG | + | chr8.3:21617245-21617264 | MS.gene72389:CDS | 45.0% |
| AAGTATGGCAGGCAAAAGCC+CGG | + | chr8.3:21617014-21617033 | MS.gene72389:CDS | 50.0% | |
| AATTCGCAAAAGCCACTCGC+AGG | + | chr8.3:21616945-21616964 | MS.gene72389:CDS | 50.0% | |
| AGAGAATCTACGGCGGACAT+TGG | + | chr8.3:21616838-21616857 | MS.gene72389:CDS | 50.0% | |
| ATGTCTCAACAACTCACCGC+AGG | + | chr8.3:21616362-21616381 | MS.gene72389:CDS | 50.0% | |
| CTTGGGCTTCCATGGTTAAC+TGG | - | chr8.3:21616997-21617016 | None:intergenic | 50.0% | |
| GCAACTTCCACCACTCTATC+AGG | - | chr8.3:21617181-21617200 | None:intergenic | 50.0% | |
| TCTCGCAAGAGAGGAAGAGA+AGG | + | chr8.3:21616392-21616411 | MS.gene72389:intron | 50.0% | |
| TTACCGGGAGCTACTAAACG+CGG | + | chr8.3:21616880-21616899 | MS.gene72389:CDS | 50.0% | |
| TTCAGGGAGAGAATCTACGG+CGG | + | chr8.3:21616831-21616850 | MS.gene72389:intron | 50.0% | |
| ! | GGCTTTTGCCTGCCATACTT+GGG | - | chr8.3:21617014-21617033 | None:intergenic | 50.0% |
| AAAAGCCACTCGCAGGAACG+CGG | + | chr8.3:21616952-21616971 | MS.gene72389:CDS | 55.0% | |
| AGTATGGCAGGCAAAAGCCC+GGG | + | chr8.3:21617015-21617034 | MS.gene72389:CDS | 55.0% | |
| CATGGAAGCCCAAGTATGGC+AGG | + | chr8.3:21617003-21617022 | MS.gene72389:CDS | 55.0% | |
| CTGCCATACTTGGGCTTCCA+TGG | - | chr8.3:21617005-21617024 | None:intergenic | 55.0% | |
| CTGGGCTTGTAGAGAAGCTG+CGG | - | chr8.3:21617053-21617072 | None:intergenic | 55.0% | |
| GAATCTACGGCGGACATTGG+CGG | + | chr8.3:21616841-21616860 | MS.gene72389:CDS | 55.0% | |
| TAAATCCGCGTTCCTGCGAG+TGG | - | chr8.3:21616960-21616979 | None:intergenic | 55.0% | |
| TCTCAAACCGGCGAAGATGC+CGG | + | chr8.3:21617091-21617110 | MS.gene72389:CDS | 55.0% | |
| ! | CGCGGATTTAGAAGCGCGTA+CGG | + | chr8.3:21616970-21616989 | MS.gene72389:CDS | 55.0% |
| ! | GGGCTTTTGCCTGCCATACT+TGG | - | chr8.3:21617015-21617034 | None:intergenic | 55.0% |
| ! | TAGAGTGGTGGAAGTTGCGG+CGG | + | chr8.3:21617183-21617202 | MS.gene72389:CDS | 55.0% |
| ACTAAACGCGGCGGAGGAAG+CGG | + | chr8.3:21616892-21616911 | MS.gene72389:CDS | 60.0% | |
| AGAAGCTGCGGCGGCTTCTT+GGG | - | chr8.3:21617041-21617060 | None:intergenic | 60.0% | |
| CGGCGCGTGGGAAATGTAGA+GGG | + | chr8.3:21617203-21617222 | MS.gene72389:CDS | 60.0% | |
| GCGTACGGCCCAGTTAACCA+TGG | + | chr8.3:21616985-21617004 | MS.gene72389:CDS | 60.0% | |
| GGCTTGTAGAGAAGCTGCGG+CGG | - | chr8.3:21617050-21617069 | None:intergenic | 60.0% | |
| ! | GTGTGAGAAGCGCGTGGCAA+CGG | + | chr8.3:21617225-21617244 | MS.gene72389:CDS | 60.0% |
| ! | TAGAGGGTGTGAGAAGCGCG+TGG | + | chr8.3:21617219-21617238 | MS.gene72389:CDS | 60.0% |
| CAAACCGGCGAAGATGCCGG+CGG | + | chr8.3:21617094-21617113 | MS.gene72389:CDS | 65.0% | |
| CCGCCGCGTTTAGTAGCTCC+CGG | - | chr8.3:21616886-21616905 | None:intergenic | 65.0% | |
| CCGGGAGCTACTAAACGCGG+CGG | + | chr8.3:21616883-21616902 | MS.gene72389:CDS | 65.0% | |
| CGGCGTGGAAGGACAAGCTG+AGG | + | chr8.3:21617132-21617151 | MS.gene72389:CDS | 65.0% | |
| GAGAAGCTGCGGCGGCTTCT+TGG | - | chr8.3:21617042-21617061 | None:intergenic | 65.0% | |
| GCGGCGCGTGGGAAATGTAG+AGG | + | chr8.3:21617202-21617221 | MS.gene72389:CDS | 65.0% | |
| GGAGCTACTAAACGCGGCGG+AGG | + | chr8.3:21616886-21616905 | MS.gene72389:CDS | 65.0% | |
| GGCGGACATTGGCGGAGAAG+AGG | + | chr8.3:21616849-21616868 | MS.gene72389:CDS | 65.0% | |
| GGCGTTTCATGCGGCGTGGA+AGG | + | chr8.3:21617121-21617140 | MS.gene72389:CDS | 65.0% | |
| ! | TGAGAAGCGCGTGGCAACGG+TGG | + | chr8.3:21617228-21617247 | MS.gene72389:CDS | 65.0% |
| AAACGCGGCGGAGGAAGCGG+TGG | + | chr8.3:21616895-21616914 | MS.gene72389:CDS | 70.0% | |
| AGGCGGCGTTTCATGCGGCG+TGG | + | chr8.3:21617117-21617136 | MS.gene72389:CDS | 70.0% | |
| GCATGAAACGCCGCCTCCGC+CGG | - | chr8.3:21617113-21617132 | None:intergenic | 70.0% | |
| GGCGGAGGCGGCGTTTCATG+CGG | + | chr8.3:21617112-21617131 | MS.gene72389:CDS | 70.0% | |
| TGGAAGTTGCGGCGGCGCGT+GGG | + | chr8.3:21617191-21617210 | MS.gene72389:CDS | 70.0% | |
| ACCGGCGAAGATGCCGGCGG+AGG | + | chr8.3:21617097-21617116 | MS.gene72389:CDS | 75.0% | |
| CGGAGGAAGCGGTGGCGCAC+CGG | + | chr8.3:21616903-21616922 | MS.gene72389:CDS | 75.0% | |
| CTGCGGCGGCTTCTTGGGCC+CGG | - | chr8.3:21617036-21617055 | None:intergenic | 75.0% | |
| GCCTCCGCCGGCATCTTCGC+CGG | - | chr8.3:21617101-21617120 | None:intergenic | 75.0% | |
| GGCGAAGATGCCGGCGGAGG+CGG | + | chr8.3:21617100-21617119 | MS.gene72389:CDS | 75.0% | |
| GTGGAAGTTGCGGCGGCGCG+TGG | + | chr8.3:21617190-21617209 | MS.gene72389:CDS | 75.0% | |
| TGCGGCGGCTTCTTGGGCCC+GGG | - | chr8.3:21617035-21617054 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 21616362 | 21617363 | 21616362 | ID=MS.gene72389 |
| chr8.3 | mRNA | 21616362 | 21617363 | 21616362 | ID=MS.gene72389.t1;Parent=MS.gene72389 |
| chr8.3 | exon | 21616362 | 21616383 | 21616362 | ID=MS.gene72389.t1.exon1;Parent=MS.gene72389.t1 |
| chr8.3 | CDS | 21616362 | 21616383 | 21616362 | ID=cds.MS.gene72389.t1;Parent=MS.gene72389.t1 |
| chr8.3 | exon | 21616657 | 21616715 | 21616657 | ID=MS.gene72389.t1.exon2;Parent=MS.gene72389.t1 |
| chr8.3 | CDS | 21616657 | 21616715 | 21616657 | ID=cds.MS.gene72389.t1;Parent=MS.gene72389.t1 |
| chr8.3 | exon | 21616836 | 21617363 | 21616836 | ID=MS.gene72389.t1.exon3;Parent=MS.gene72389.t1 |
| chr8.3 | CDS | 21616836 | 21617363 | 21616836 | ID=cds.MS.gene72389.t1;Parent=MS.gene72389.t1 |
| Gene Sequence |
| Protein sequence |
